Query psy4965
Match_columns 179
No_of_seqs 213 out of 1494
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:24:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 1.8E-43 3.9E-48 314.3 18.0 172 1-179 250-421 (421)
2 PRK14296 chaperone protein Dna 100.0 2.2E-29 4.8E-34 221.2 15.2 111 2-117 250-361 (372)
3 PRK14288 chaperone protein Dna 100.0 3.4E-29 7.5E-34 219.7 15.5 112 1-117 234-345 (369)
4 PRK14278 chaperone protein Dna 100.0 8.6E-28 1.9E-32 211.5 15.0 110 3-117 241-350 (378)
5 PRK14286 chaperone protein Dna 100.0 9.2E-28 2E-32 210.9 15.0 111 3-118 248-358 (372)
6 PRK14277 chaperone protein Dna 100.0 9.6E-28 2.1E-32 211.7 15.2 110 2-117 256-365 (386)
7 COG0484 DnaJ DnaJ-class molecu 100.0 7.1E-28 1.5E-32 209.9 14.0 111 2-118 241-351 (371)
8 PRK14281 chaperone protein Dna 100.0 9.9E-28 2.1E-32 212.3 14.6 110 2-117 263-372 (397)
9 PRK14280 chaperone protein Dna 100.0 1.7E-27 3.8E-32 209.4 15.4 109 3-117 245-353 (376)
10 PRK14295 chaperone protein Dna 100.0 1.8E-27 4E-32 210.1 15.1 110 2-117 263-372 (389)
11 PRK14298 chaperone protein Dna 100.0 2.2E-27 4.8E-32 208.8 15.1 110 2-117 242-351 (377)
12 PRK14287 chaperone protein Dna 99.9 4E-27 8.7E-32 206.8 15.3 110 2-117 239-348 (371)
13 PRK14276 chaperone protein Dna 99.9 6E-27 1.3E-31 206.2 15.2 109 3-117 248-356 (380)
14 PRK14297 chaperone protein Dna 99.9 5.4E-27 1.2E-31 206.5 14.7 111 2-118 249-359 (380)
15 PRK14300 chaperone protein Dna 99.9 7.3E-27 1.6E-31 205.2 15.4 110 2-116 242-351 (372)
16 PRK14284 chaperone protein Dna 99.9 6.9E-27 1.5E-31 206.5 15.1 111 2-117 255-366 (391)
17 PRK14279 chaperone protein Dna 99.9 7.1E-27 1.5E-31 206.5 15.1 109 2-117 270-378 (392)
18 PRK14285 chaperone protein Dna 99.9 1.2E-26 2.7E-31 203.3 15.1 113 3-120 244-356 (365)
19 PRK14301 chaperone protein Dna 99.9 1.3E-26 2.9E-31 203.6 15.2 110 2-117 241-350 (373)
20 PRK14291 chaperone protein Dna 99.9 1.5E-26 3.2E-31 203.9 15.2 116 2-120 252-373 (382)
21 PRK10767 chaperone protein Dna 99.9 1.9E-26 4E-31 202.4 15.2 110 2-117 239-348 (371)
22 PRK14282 chaperone protein Dna 99.9 2E-26 4.3E-31 202.2 15.2 112 2-118 253-364 (369)
23 PRK14294 chaperone protein Dna 99.9 2E-26 4.3E-31 202.0 14.9 110 2-117 241-350 (366)
24 PRK14299 chaperone protein Dna 99.9 2.7E-26 5.8E-31 195.7 15.0 105 5-116 181-285 (291)
25 KOG0712|consensus 99.9 8.6E-27 1.9E-31 200.8 11.6 110 1-115 228-337 (337)
26 TIGR02349 DnaJ_bact chaperone 99.9 4.1E-26 9E-31 199.0 15.2 110 2-117 244-353 (354)
27 PRK14290 chaperone protein Dna 99.9 3.1E-26 6.8E-31 200.7 14.4 114 1-120 246-359 (365)
28 PRK14283 chaperone protein Dna 99.9 7.2E-26 1.6E-30 199.3 15.4 108 3-116 248-355 (378)
29 PRK14293 chaperone protein Dna 99.9 7.5E-26 1.6E-30 198.9 14.4 111 2-117 244-354 (374)
30 PRK10266 curved DNA-binding pr 99.9 2.7E-25 5.9E-30 190.6 14.9 108 2-117 186-293 (306)
31 PRK14289 chaperone protein Dna 99.9 6.8E-25 1.5E-29 193.5 14.5 110 2-117 255-364 (386)
32 PRK14292 chaperone protein Dna 99.9 8.6E-25 1.9E-29 191.9 14.6 106 6-117 243-348 (371)
33 PF01556 CTDII: DnaJ C termina 99.9 9.6E-24 2.1E-28 148.3 8.0 81 26-110 1-81 (81)
34 TIGR03835 termin_org_DnaJ term 99.9 1.5E-22 3.3E-27 187.9 14.2 105 5-114 726-831 (871)
35 PRK14299 chaperone protein Dna 99.2 6.2E-11 1.3E-15 101.3 8.9 70 20-99 125-194 (291)
36 PRK10266 curved DNA-binding pr 99.1 3.7E-10 8.1E-15 97.1 8.8 76 22-101 115-203 (306)
37 PRK14289 chaperone protein Dna 98.9 1.9E-09 4E-14 95.5 7.2 82 23-109 126-279 (386)
38 KOG0713|consensus 98.9 4E-10 8.7E-15 97.2 -0.3 100 3-105 229-328 (336)
39 PRK14293 chaperone protein Dna 98.8 1.7E-08 3.6E-13 89.1 8.7 52 53-109 217-268 (374)
40 PRK14301 chaperone protein Dna 98.8 2.8E-08 6E-13 87.8 10.0 76 22-100 115-258 (373)
41 PRK14286 chaperone protein Dna 98.8 2.9E-08 6.2E-13 87.7 8.7 75 22-100 121-263 (372)
42 PRK14287 chaperone protein Dna 98.7 4.3E-08 9.3E-13 86.5 8.7 73 22-97 109-253 (371)
43 PRK14285 chaperone protein Dna 98.7 5.6E-08 1.2E-12 85.6 9.2 76 22-100 117-260 (365)
44 PRK14283 chaperone protein Dna 98.7 6.5E-08 1.4E-12 85.5 9.4 76 22-100 117-264 (378)
45 PRK14295 chaperone protein Dna 98.7 5.8E-08 1.3E-12 86.2 8.9 76 22-101 137-280 (389)
46 PRK14280 chaperone protein Dna 98.7 5.8E-08 1.2E-12 85.8 8.5 75 22-100 114-260 (376)
47 PRK14277 chaperone protein Dna 98.7 6.4E-08 1.4E-12 85.8 8.8 75 22-100 126-272 (386)
48 PRK14298 chaperone protein Dna 98.7 5.6E-08 1.2E-12 86.0 8.2 75 22-100 112-258 (377)
49 PRK14292 chaperone protein Dna 98.7 5.5E-08 1.2E-12 85.7 8.1 78 22-106 110-260 (371)
50 PRK14276 chaperone protein Dna 98.7 7.8E-08 1.7E-12 85.1 9.0 75 22-100 117-263 (380)
51 PRK14296 chaperone protein Dna 98.7 7.9E-08 1.7E-12 84.9 8.8 93 22-118 120-292 (372)
52 PRK14279 chaperone protein Dna 98.7 8.4E-08 1.8E-12 85.3 8.6 75 22-100 144-286 (392)
53 PRK14297 chaperone protein Dna 98.7 9.6E-08 2.1E-12 84.5 8.9 76 22-100 119-266 (380)
54 PRK10767 chaperone protein Dna 98.7 1.2E-07 2.7E-12 83.5 9.1 75 22-100 113-255 (371)
55 PRK14281 chaperone protein Dna 98.7 1.1E-07 2.5E-12 84.6 8.9 74 23-100 135-279 (397)
56 PRK14282 chaperone protein Dna 98.7 1.1E-07 2.5E-12 83.7 8.9 75 22-100 123-269 (369)
57 TIGR02349 DnaJ_bact chaperone 98.7 1.4E-07 3.1E-12 82.5 9.4 76 22-100 114-261 (354)
58 COG0484 DnaJ DnaJ-class molecu 98.6 1.3E-07 2.7E-12 83.3 8.5 92 21-116 112-280 (371)
59 PRK14294 chaperone protein Dna 98.6 1.7E-07 3.6E-12 82.6 9.4 77 22-102 115-259 (366)
60 PRK14284 chaperone protein Dna 98.5 4.2E-07 9.1E-12 80.7 9.0 75 22-100 129-271 (391)
61 PRK14278 chaperone protein Dna 98.5 4E-07 8.7E-12 80.6 8.8 75 22-100 110-256 (378)
62 PRK14288 chaperone protein Dna 98.5 6E-07 1.3E-11 79.2 9.5 93 22-118 111-276 (369)
63 PRK14291 chaperone protein Dna 98.5 4.8E-07 1E-11 80.1 8.5 74 23-100 128-268 (382)
64 PRK14300 chaperone protein Dna 98.5 5E-07 1.1E-11 79.8 8.4 75 22-100 116-258 (372)
65 PTZ00037 DnaJ_C chaperone prot 98.3 3.1E-06 6.7E-11 76.0 8.8 44 52-100 224-267 (421)
66 PRK14290 chaperone protein Dna 98.3 3E-06 6.4E-11 74.7 8.4 72 23-100 121-263 (365)
67 TIGR03835 termin_org_DnaJ term 98.2 9E-06 2E-10 77.1 9.7 95 17-117 649-763 (871)
68 KOG0714|consensus 97.9 3.4E-05 7.3E-10 63.7 6.4 76 3-79 228-305 (306)
69 PF12991 DUF3875: Domain of un 62.7 9 0.00019 24.9 2.6 27 85-111 26-52 (54)
70 PF02814 UreE_N: UreE urease a 57.0 27 0.00059 22.9 4.4 46 28-74 16-61 (65)
71 PRK13263 ureE urease accessory 52.5 48 0.001 27.3 5.9 47 27-74 21-67 (206)
72 COG2214 CbpA DnaJ-class molecu 52.3 54 0.0012 25.1 6.1 69 26-99 150-218 (237)
73 PRK13261 ureE urease accessory 48.8 65 0.0014 25.1 6.0 46 28-74 21-66 (159)
74 cd00571 UreE UreE urease acces 46.3 78 0.0017 23.9 5.9 46 28-74 20-65 (136)
75 PRK14113 urease accessory prot 38.2 1E+02 0.0023 23.9 5.6 45 28-73 16-60 (152)
76 PRK14112 urease accessory prot 35.9 1.4E+02 0.0031 23.2 6.0 46 28-74 22-67 (149)
77 PRK14051 negative regulator Gr 35.7 1.8E+02 0.0039 21.7 6.1 70 6-79 48-119 (123)
78 COG3128 PiuC Uncharacterized i 35.6 50 0.0011 27.2 3.5 43 18-62 110-152 (229)
79 PRK13262 ureE urease accessory 35.3 1.3E+02 0.0028 25.2 6.0 45 29-74 27-71 (231)
80 KOG0712|consensus 34.2 1E+02 0.0022 27.3 5.4 23 24-46 100-122 (337)
81 PF01333 Apocytochr_F_C: Apocy 33.3 34 0.00073 25.7 2.0 56 40-98 22-81 (118)
82 PF12791 RsgI_N: Anti-sigma fa 33.0 1.3E+02 0.0027 18.8 4.5 33 41-75 5-37 (56)
83 PF02963 EcoRI: Restriction en 32.5 18 0.00039 30.1 0.5 39 43-82 162-200 (257)
84 KOG0715|consensus 32.3 77 0.0017 27.2 4.4 34 53-97 234-267 (288)
85 KOG0315|consensus 30.8 32 0.00069 29.6 1.7 25 29-53 18-43 (311)
86 COG2371 UreE Urease accessory 26.7 1.8E+02 0.0039 22.8 5.2 44 30-74 23-66 (155)
87 smart00276 GLECT Galectin. Gal 26.1 1.2E+02 0.0026 22.3 4.0 43 56-100 3-50 (128)
88 PF02426 MIase: Muconolactone 22.5 1.6E+02 0.0036 20.9 3.9 23 89-113 3-25 (91)
89 cd04015 C2_plant_PLD C2 domain 21.6 3.4E+02 0.0073 20.7 5.9 13 6-18 58-70 (158)
90 PRK14711 ureE urease accessory 21.3 3.4E+02 0.0074 22.0 6.0 43 30-73 27-69 (191)
91 PRK10053 hypothetical protein; 21.1 1E+02 0.0022 23.4 2.8 32 43-75 78-113 (130)
92 PRK12297 obgE GTPase CgtA; Rev 21.0 79 0.0017 28.7 2.5 14 2-15 38-51 (424)
93 PF02736 Myosin_N: Myosin N-te 20.6 1.4E+02 0.0031 17.7 2.9 29 26-57 11-39 (42)
94 PRK14553 hypothetical protein; 20.6 2.3E+02 0.005 20.4 4.5 26 6-31 10-35 (108)
95 COG0536 Obg Predicted GTPase [ 20.5 51 0.0011 29.5 1.1 17 2-18 39-55 (369)
96 TIGR03221 muco_delta muconolac 20.2 2E+02 0.0043 20.6 3.9 22 90-113 3-24 (90)
97 TIGR00156 conserved hypothetic 20.1 1E+02 0.0022 23.4 2.5 32 43-75 74-109 (126)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=314.31 Aligned_cols=172 Identities=41% Similarity=0.715 Sum_probs=147.3
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
|+..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.|.|++|+|+|++||++++|+|+|||..
T Consensus 250 ~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~ 329 (421)
T PTZ00037 250 PNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTY 329 (421)
T ss_pred CCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeecCcccccCCCCCCCCCCCCCCC
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDE 160 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd 160 (179)
++++.+|||||+|+|.||+..+||++++++|++||+.+++.++ .....++|++++++|++++...+ .+++||++|+
T Consensus 330 ~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~ 405 (421)
T PTZ00037 330 KSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDE 405 (421)
T ss_pred CCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhcccc
Confidence 7555789999999999994333999999999999997655322 22346899999999999743222 3478888877
Q ss_pred cccccCCCCCCCCCcccCC
Q psy4965 161 DDEMGGHMHEGQSVRCANQ 179 (179)
Q Consensus 161 ~~~~~~~~~~~~~vqC~~q 179 (179)
|+++. +++++||||||
T Consensus 406 ~~~~~---~~~~~v~c~~q 421 (421)
T PTZ00037 406 DDEHH---QEGERVACRQQ 421 (421)
T ss_pred ccccC---CCCCccccCCC
Confidence 76531 46689999998
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=2.2e-29 Score=221.18 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=104.1
Q ss_pred CCCCccEEEEEEEecCCCCeee-CCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQ-GINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~-g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
+..+|||+|+|++++|+.|+|+ |+||++++.|||.+||+|+++.|+||||+ +.|++|++ +++|++++|+|+|||..
T Consensus 250 ~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~~ri~GkGmP~~ 326 (372)
T PRK14296 250 NGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNELIIINNKGLYKS 326 (372)
T ss_pred CCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcEEEEcCCCCCcC
Confidence 5679999999999999999996 89999999999999999999999999999 99999998 99999999999999966
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
.+++.+|||||+|+|.||+. |+++|+++|++++..
T Consensus 327 ~~~~~~GDL~V~~~V~~P~~--Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 327 INKDKRGDLIIKVNIVVPKN--LSKKEKELIEQIYEQ 361 (372)
T ss_pred CCCCCcCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 54457899999999999999 999999999999864
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=3.4e-29 Score=219.72 Aligned_cols=112 Identities=21% Similarity=0.353 Sum_probs=105.7
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
|+..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.+.|++|++ +++|++++|+|+|||..
T Consensus 234 ~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p~~ 311 (369)
T PRK14288 234 EKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVKHP 311 (369)
T ss_pred CCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCCCC
Confidence 4567999999999999999999999999999999999999999999999999899999998 99999999999999987
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
++ ..+|||||+|+|.||+. |+++|+++|+++++.
T Consensus 312 ~~-~~~GDL~v~~~v~~P~~--ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 312 ES-SYRGSLIVELQVIYPKS--LNKEQQELLEKLHAS 345 (369)
T ss_pred CC-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 63 46899999999999999 999999999999974
No 4
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=8.6e-28 Score=211.48 Aligned_cols=110 Identities=27% Similarity=0.470 Sum_probs=103.8
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+|||++.+.|+||+| +++|++++|+|+|||..++
T Consensus 241 ~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~~~~ 318 (378)
T PRK14278 241 GPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPHLRS 318 (378)
T ss_pred CCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCCCCC
Confidence 46799999999999999999999999999999999999999999999777799999999 9999999999999998654
Q ss_pred CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
..+|||||+|+|.||++ |+++++++|+++++.
T Consensus 319 -~~~GDL~V~~~V~~P~~--Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 319 -GGRGDLHAHVEVVVPTR--LDHEDIELLRELKAL 350 (378)
T ss_pred -CCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHhh
Confidence 47899999999999999 999999999999964
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=9.2e-28 Score=210.90 Aligned_cols=111 Identities=23% Similarity=0.439 Sum_probs=104.8
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|++|+| +++|++++|+|+|||..++
T Consensus 248 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G~G~P~~~~ 325 (372)
T PRK14286 248 GPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKGHGMPYLGA 325 (372)
T ss_pred CCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECCCCCCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999 9999999999999998764
Q ss_pred CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965 83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118 (179)
Q Consensus 83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~ 118 (179)
..+|||||+|+|.||+. |+++|+++|++++...
T Consensus 326 -~~~GDL~V~~~V~~P~~--Ls~~qk~~l~~l~~~~ 358 (372)
T PRK14286 326 -YGKGDQHVIVKIEIPKK--ITRRQRELIEEFARES 358 (372)
T ss_pred -CCCCcEEEEEEEECCCC--CCHHHHHHHHHHHHhc
Confidence 46899999999999999 9999999999999754
No 6
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=9.6e-28 Score=211.67 Aligned_cols=110 Identities=26% Similarity=0.415 Sum_probs=103.6
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 256 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~ri~g~G~p~~~ 332 (386)
T PRK14277 256 GGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTKFRLRGKGIPHLR 332 (386)
T ss_pred CCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCEEEECCCCCCCCC
Confidence 346899999999999999999999999999999999999999999999999 89999999 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+++|+++|++++..
T Consensus 333 ~-~~~GDL~v~~~V~~P~~--Ls~~qk~~l~~l~~~ 365 (386)
T PRK14277 333 G-RGRGDQIVKVYIEVPKK--LTEKQKELLREFEKL 365 (386)
T ss_pred C-CCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHhh
Confidence 4 36899999999999999 999999999999864
No 7
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.1e-28 Score=209.89 Aligned_cols=111 Identities=28% Similarity=0.489 Sum_probs=105.8
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
|+++|||||+|.+++|+.|+|.|+||++++.|++.+|++|+++.|+||||+ ++|+||+| +++|++++|+|+|||..+
T Consensus 241 Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~~~ 317 (371)
T COG0484 241 GGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPKLR 317 (371)
T ss_pred CCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccccC
Confidence 678999999999999999999999999999999999999999999999999 99999999 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~ 118 (179)
+ ..+|||||+|+|++|++ |+.+|+++|++++...
T Consensus 318 ~-~~~GDl~v~v~v~~P~~--ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 318 S-GGRGDLYVRVKVETPKN--LSDEQKELLEEFAKSL 351 (371)
T ss_pred C-CCcCCEEEEEEEEcCCC--CCHHHHHHHHHHHHhh
Confidence 5 46799999999999999 9999999999998744
No 8
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=9.9e-28 Score=212.27 Aligned_cols=110 Identities=26% Similarity=0.522 Sum_probs=103.9
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 263 ~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~G~~~ri~g~G~P~~~ 339 (397)
T PRK14281 263 GGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG--TQPETMLRIPGKGIGHLR 339 (397)
T ss_pred CCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCc--cCCCcEEEEcCCCCCCCC
Confidence 357899999999999999999999999999999999999999999999998 89999999 999999999999999765
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+++|+++|++|+..
T Consensus 340 ~-~~~GDL~V~~~V~~P~~--Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 340 G-SGRGDQYVRVNVFVPKE--VSHQDKELLKELKKS 372 (397)
T ss_pred C-CCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHhh
Confidence 4 47899999999999999 999999999999963
No 9
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.7e-27 Score=209.38 Aligned_cols=109 Identities=22% Similarity=0.413 Sum_probs=103.1
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..++
T Consensus 245 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~~ 321 (376)
T PRK14280 245 GPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVPNVRG 321 (376)
T ss_pred CCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCCCCCC
Confidence 46899999999999999999999999999999999999999999999998 89999999 9999999999999998754
Q ss_pred CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
..+|||||+|+|.||+. |+++++++|++++..
T Consensus 322 -~~~GDL~v~~~v~~P~~--Ls~~q~~~l~~l~~~ 353 (376)
T PRK14280 322 -YGQGDQYVVVRVVTPTK--LTDRQKELLREFAEL 353 (376)
T ss_pred -CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 46899999999999999 999999999999864
No 10
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.8e-27 Score=210.08 Aligned_cols=110 Identities=25% Similarity=0.403 Sum_probs=103.9
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|.+++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.+.|+||+| +++|++++|+|+|||...
T Consensus 263 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g--~~~g~~iri~G~G~p~~~ 340 (389)
T PRK14295 263 GGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG--TPNGRVLRVRGKGAVRKD 340 (389)
T ss_pred CCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc--cCCCcEEEECCCCcCCCC
Confidence 456899999999999999999999999999999999999999999999998899999999 999999999999999743
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+.+|||||+|+|.||++ |+++|+++|++++..
T Consensus 341 --~~~GDL~i~~~v~~P~~--Ls~~qk~~l~~l~~~ 372 (389)
T PRK14295 341 --GTRGDLLVTVEVAVPKD--LSGKAREALEAFREA 372 (389)
T ss_pred --CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 46899999999999999 999999999999864
No 11
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2.2e-27 Score=208.84 Aligned_cols=110 Identities=25% Similarity=0.408 Sum_probs=104.0
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 242 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~~~ 318 (377)
T PRK14298 242 GAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPRLH 318 (377)
T ss_pred CCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCCCC
Confidence 567899999999999999999999999999999999999999999999999 89999999 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+.+++++|++++..
T Consensus 319 ~-~~~GDL~V~~~V~~P~~--ls~~~~~ll~~l~~~ 351 (377)
T PRK14298 319 G-HGKGDQLVKVIVKTPTK--LTQEQKELLREFDEL 351 (377)
T ss_pred C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 4 46899999999999998 999999999999864
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=4e-27 Score=206.78 Aligned_cols=110 Identities=19% Similarity=0.372 Sum_probs=103.7
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~ 315 (371)
T PRK14287 239 GGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPNVH 315 (371)
T ss_pred CCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccCCC
Confidence 347899999999999999999999999999999999999999999999998 89999999 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+.+++++|++++..
T Consensus 316 ~-~~~GDL~V~~~v~~P~~--l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 316 G-RGQGDQHVQVRVVTPKN--LTEKEKELMREFAGM 348 (371)
T ss_pred C-CCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHhh
Confidence 4 46899999999999999 999999999999964
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=6e-27 Score=206.24 Aligned_cols=109 Identities=22% Similarity=0.370 Sum_probs=103.0
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+ +.|+||+| +++|++++|+|+|||..++
T Consensus 248 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~~ 324 (380)
T PRK14276 248 GPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGKGAPKLRG 324 (380)
T ss_pred CCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCCCcCCCCC
Confidence 46799999999999999999999999999999999999999999999999 89999999 9999999999999998754
Q ss_pred CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
..+|||||+|+|.||+. |+++++++|++++..
T Consensus 325 -~~~GDL~V~~~v~~P~~--l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 325 -GGNGDQHVTVNIVTPTK--LNDAQKEALKAFAKA 356 (380)
T ss_pred -CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 46899999999999999 999999999999853
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=5.4e-27 Score=206.50 Aligned_cols=111 Identities=22% Similarity=0.454 Sum_probs=104.2
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 249 ~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~G~p~~~ 325 (380)
T PRK14297 249 GGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGKGVPRVN 325 (380)
T ss_pred CCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCCCcCCCC
Confidence 346899999999999999999999999999999999999999999999998 89999999 999999999999999765
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~ 118 (179)
+ +.+|||||+|+|.||+. |+++++++|+++++..
T Consensus 326 ~-~~~GDL~v~~~v~~P~~--ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 326 S-TGRGNQYVTVIVDIPKK--LNSKQKEALTMFMEAS 359 (380)
T ss_pred C-CCCCcEEEEEEEEcCCC--CCHHHHHHHHHHHHhc
Confidence 4 47899999999999999 9999999999999754
No 15
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=7.3e-27 Score=205.19 Aligned_cols=110 Identities=21% Similarity=0.353 Sum_probs=104.3
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|+||+| +++|++++|+|+|||..+
T Consensus 242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~p~~~ 319 (372)
T PRK14300 242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGMSKMR 319 (372)
T ss_pred CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCCCCCC
Confidence 457899999999999999999999999999999999999999999999998899999999 999999999999999765
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS 116 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~ 116 (179)
+ ..+|||||+|+|.||++ ||++|+++|++++.
T Consensus 320 ~-~~~GDL~V~~~v~~P~~--ls~~qk~~l~~l~~ 351 (372)
T PRK14300 320 S-TIRGDMLTHIHVEVPKN--LSKRQRELLEEFKK 351 (372)
T ss_pred C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHh
Confidence 3 46899999999999999 99999999999985
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=6.9e-27 Score=206.52 Aligned_cols=111 Identities=24% Similarity=0.460 Sum_probs=104.2
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccC-CcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD-DRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ld-Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
+..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||| |+.+.|+||+| +++|++++|+|+|||..
T Consensus 255 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g--~~~g~~~~i~g~G~p~~ 332 (391)
T PRK14284 255 GAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG--IQSGTILKVRGQGFPNV 332 (391)
T ss_pred CCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc--cCCCeEEEECCCCCCCC
Confidence 4578999999999999999999999999999999999999999999999 67799999999 99999999999999987
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
++ ..+|||||+|+|.||+. |+++++++|++++..
T Consensus 333 ~~-~~~GDL~V~~~v~~P~~--l~~~q~~ll~~l~~~ 366 (391)
T PRK14284 333 HG-KGRGDLLVRISVETPQN--LSEEQKELLRQFAAT 366 (391)
T ss_pred CC-CCCCcEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 54 46899999999999999 999999999999853
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=7.1e-27 Score=206.55 Aligned_cols=109 Identities=26% Similarity=0.402 Sum_probs=102.6
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||...
T Consensus 270 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~Ip~g--~~~g~~iri~g~G~p~~~ 346 (392)
T PRK14279 270 GAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVKVPAG--TADGRILRVRGRGVPKRS 346 (392)
T ss_pred CCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-EEEEECCC--CCCCCEEEECCCCCCCCC
Confidence 346799999999999999999999999999999999999999999999998 89999999 999999999999999743
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+.+|||||+|+|.||++ |+++|+++|++++..
T Consensus 347 --~~~GDL~I~~~v~~P~~--Ls~~q~~~l~~~~~~ 378 (392)
T PRK14279 347 --GGAGDLLVTVKVAVPPN--LDGAAAEALEAYAEA 378 (392)
T ss_pred --CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 46899999999999999 999999999999964
No 18
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=1.2e-26 Score=203.31 Aligned_cols=113 Identities=30% Similarity=0.441 Sum_probs=105.6
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.+.|+||+| +++|++++|+|+|||..+.
T Consensus 244 ~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~GkG~p~~~~ 321 (365)
T PRK14285 244 QQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKNEGMPILHT 321 (365)
T ss_pred CCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECCCCccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999 9999999999999998764
Q ss_pred CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCCCC
Q psy4965 83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120 (179)
Q Consensus 83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~~~ 120 (179)
..+|||||+|+|.||+. |+++++++|++++...+.
T Consensus 322 -~~~GDL~V~~~v~~P~~--l~~~q~~~l~~l~~~~~~ 356 (365)
T PRK14285 322 -EKFGNLILIIKIKTPKN--LNSNAIKLLENLSKELKD 356 (365)
T ss_pred -CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHHhcc
Confidence 36799999999999999 999999999999865433
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=1.3e-26 Score=203.65 Aligned_cols=110 Identities=26% Similarity=0.445 Sum_probs=103.8
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 241 ~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~~~ 317 (373)
T PRK14301 241 GGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLPYLG 317 (373)
T ss_pred CCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCCCCC
Confidence 456899999999999999999999999999999999999999999999999 99999999 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+++++++|++++..
T Consensus 318 ~-~~~GDL~I~~~V~~P~~--l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 318 S-SQKGDLLVEVSVVTPTK--LTKRQEELLREFEAL 350 (373)
T ss_pred C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 4 46899999999999998 999999999999864
No 20
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=1.5e-26 Score=203.91 Aligned_cols=116 Identities=31% Similarity=0.477 Sum_probs=106.0
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
|..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+.+.|+||+| +++|++++|+|+|||..+
T Consensus 252 g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G~~i~i~G~G~p~~~ 329 (382)
T PRK14291 252 GGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEGDKIRVPGKGMPRLK 329 (382)
T ss_pred CCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCCEEEECCCCCCCCC
Confidence 578999999999999999999999999999999999999999999999999899999999 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCC------HHHHHHHHHhcCCCCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNN------DAKLKELEALLSPRPS 120 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~------~~~~~~l~~~l~~~~~ 120 (179)
. ..+|||||+|+|.||+...|+ ++++++|++|+....+
T Consensus 330 ~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~ 373 (382)
T PRK14291 330 G-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPE 373 (382)
T ss_pred C-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCC
Confidence 4 368999999999999843489 9999999998765433
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=1.9e-26 Score=202.42 Aligned_cols=110 Identities=24% Similarity=0.367 Sum_probs=103.5
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i~g~G~p~~~ 315 (371)
T PRK10767 239 GGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGR-VKLKIPEG--TQTGKLFRLRGKGVKSVR 315 (371)
T ss_pred CCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCc-EEEEeCCC--CCCCCEEEECCCCcCCCC
Confidence 456899999999999999999999999999999999999999999999995 99999999 999999999999999865
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+.+++++|++++..
T Consensus 316 ~-~~~GDL~v~~~v~~P~~--l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 316 S-GARGDLYCQVVVETPVN--LTKRQKELLEEFEES 348 (371)
T ss_pred C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 4 47899999999999998 999999999999963
No 22
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=2e-26 Score=202.24 Aligned_cols=112 Identities=26% Similarity=0.488 Sum_probs=104.9
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+.+.|+||+| +++|++++|+|+|||..+
T Consensus 253 ~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~iri~GkG~p~~~ 330 (369)
T PRK14282 253 GGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVFRLKGKGLPNMR 330 (369)
T ss_pred CCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEEEECCCCCCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999 999999999999999764
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~ 118 (179)
+ +.+|||||+|+|.+|+. |+.+++++|++++...
T Consensus 331 ~-~~~GDL~V~~~v~~P~~--l~~~~~~ll~~l~~~~ 364 (369)
T PRK14282 331 Y-GRRGDLIVNVHVEIPKR--LSREERKLLKELAKKR 364 (369)
T ss_pred C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHhc
Confidence 3 46899999999999998 9999999999998643
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=2e-26 Score=202.01 Aligned_cols=110 Identities=24% Similarity=0.428 Sum_probs=103.5
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 241 ~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p~~~ 317 (366)
T PRK14294 241 GGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIPSLR 317 (366)
T ss_pred CCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCCCCC
Confidence 456899999999999999999999999999999999999999999999998 79999999 999999999999999775
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+.+++++|++++..
T Consensus 318 ~-~~~GDL~V~~~v~~P~~--l~~~q~~ll~~~~~~ 350 (366)
T PRK14294 318 G-GGRGDQIIEVEVKVPTR--LTKKQEELLTEFARL 350 (366)
T ss_pred C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHh
Confidence 4 36899999999999998 999999999999964
No 24
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=2.7e-26 Score=195.71 Aligned_cols=105 Identities=22% Similarity=0.338 Sum_probs=99.6
Q ss_pred CccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCC
Q psy4965 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPY 84 (179)
Q Consensus 5 ~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~ 84 (179)
.|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|++|++ +++|++++|+|+|||... +
T Consensus 181 ~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~rl~g~G~p~~~--~ 255 (291)
T PRK14299 181 GGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKLRLKGKGWPRGP--A 255 (291)
T ss_pred CCCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEEEECCCCCCCCC--C
Confidence 399999999999999999999999999999999999999999999998 99999998 999999999999999643 4
Q ss_pred CCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965 85 EKGTLYIKFDVQFPESYFNNDAKLKELEALLS 116 (179)
Q Consensus 85 ~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~ 116 (179)
.+|||||+|+|.||+. |+++++++|++++.
T Consensus 256 ~~GDL~v~~~V~~P~~--l~~~~~~~l~~l~~ 285 (291)
T PRK14299 256 GRGDQYAEVRITIPTR--PTPEEERLYKQLAE 285 (291)
T ss_pred CCCCEEEEEEEECCCC--CCHHHHHHHHHHHh
Confidence 7899999999999999 99999999999874
No 25
>KOG0712|consensus
Probab=99.94 E-value=8.6e-27 Score=200.79 Aligned_cols=110 Identities=53% Similarity=0.956 Sum_probs=105.8
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
|+..|||++|+|.+++|+.|.|+|+||+++.+|+|.|||||+.+.+.|||||.+.++++||+|++||++++|.|+|||++
T Consensus 228 ~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~ 307 (337)
T KOG0712|consen 228 PGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIF 307 (337)
T ss_pred CCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhc
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALL 115 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l 115 (179)
+++ +|||||.|+|+||+ ++++++..|+.+|
T Consensus 308 ~~~--~g~lyi~~~v~fp~---~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 308 RNP--KGDLYIKFEVKFPK---LSPSQLKMLEDLL 337 (337)
T ss_pred cCC--CCcEEEEEEEEcCC---CChHHHHHHHhhC
Confidence 985 99999999999999 8999999998876
No 26
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.94 E-value=4.1e-26 Score=198.99 Aligned_cols=110 Identities=25% Similarity=0.460 Sum_probs=103.2
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|.+|+| +++|++++|+|+|||..+
T Consensus 244 ~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i~g~G~p~~~ 320 (354)
T TIGR02349 244 GGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGD-VKLKIPAG--TQSGTVFRLKGKGVPRLR 320 (354)
T ss_pred CCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCce-EEEEECCc--ccCCcEEEECCCCcCCCC
Confidence 456899999999999999999999999999999999999999999999995 99999999 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ ..+|||||+|+|.||+. |+.+++++|+++|..
T Consensus 321 ~-~~~GDL~i~~~v~~P~~--l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 321 G-NGRGDLLVTVKVETPKN--LSKEQKELLEELAEA 353 (354)
T ss_pred C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 4 37899999999999998 999999999999853
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=3.1e-26 Score=200.70 Aligned_cols=114 Identities=21% Similarity=0.376 Sum_probs=106.2
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
++..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|+||+| +++|++++|+|+|||..
T Consensus 246 ~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G~p~~ 322 (365)
T PRK14290 246 YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAGMPHL 322 (365)
T ss_pred CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCCCCCC
Confidence 4678999999999999999999999999999999999999999999999997 99999999 99999999999999976
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCCCC
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~~~ 120 (179)
.+ ..+|||||+|+|.+|+. |+++++++|+++++.+.+
T Consensus 323 ~~-~~~GDL~V~~~V~~P~~--l~~~~~~ll~~~~~~~~~ 359 (365)
T PRK14290 323 NG-HGSGDLLVRINVEVPKR--LTSKQKELIREFFDIKEN 359 (365)
T ss_pred CC-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHhhhc
Confidence 54 36899999999999998 999999999999976544
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=7.2e-26 Score=199.26 Aligned_cols=108 Identities=31% Similarity=0.507 Sum_probs=102.3
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
..+|||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+ +.|+||+| +++|++++|+|+|||....
T Consensus 248 ~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~~~~ 324 (378)
T PRK14283 248 GEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGP-VELKIPAG--TQSGTTFRLKGHGMPSLRW 324 (378)
T ss_pred CCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCce-EEEEeCCC--CCCCCEEEECCCCCCCCCC
Confidence 56899999999999999999999999999999999999999999999995 99999999 9999999999999997654
Q ss_pred CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965 83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS 116 (179)
Q Consensus 83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~ 116 (179)
..+|||||+|+|.||+. |+++++++|++++.
T Consensus 325 -~~~GdL~v~~~v~~P~~--l~~~q~~ll~~~~~ 355 (378)
T PRK14283 325 -SGKGNLYVKVKVVVPKK--LSPKQKELLREFAS 355 (378)
T ss_pred -CCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHh
Confidence 46899999999999999 99999999999985
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=7.5e-26 Score=198.89 Aligned_cols=111 Identities=28% Similarity=0.472 Sum_probs=104.0
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|++|++ +++|++++|+|+|||...
T Consensus 244 ~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~~~ 320 (374)
T PRK14293 244 GGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPRLG 320 (374)
T ss_pred CCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCCCC
Confidence 346899999999999999999999999999999999999999999999998 89999998 999999999999999876
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+.+.+|||||+|+|.||+. |+++++++|++++..
T Consensus 321 ~~~~~GDL~v~~~v~~P~~--l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 321 NPVARGDHLITVKVKIPTR--ISDEERELLEKLAKI 354 (374)
T ss_pred CCCCcCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 5446899999999999998 999999999999964
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.93 E-value=2.7e-25 Score=190.63 Aligned_cols=108 Identities=23% Similarity=0.393 Sum_probs=101.9
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||+|+|++++|+.|+|+|+||++++.|||.+|++|+++.|+|++|+ +.|++|+| +++|++++|+|+|||..+
T Consensus 186 ~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p~~~ 262 (306)
T PRK10266 186 GGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLVSKK 262 (306)
T ss_pred CCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCCCCC
Confidence 356899999999999999999999999999999999999999999999998 89999999 999999999999999753
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
.+|||||+|+|.||+. |+++++++|++|+..
T Consensus 263 ---~~GdL~v~~~v~~P~~--l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 263 ---QTGDLYAVLKIVMPPK--PDEKTAALWQQLADA 293 (306)
T ss_pred ---CCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 5899999999999999 999999999999864
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=6.8e-25 Score=193.48 Aligned_cols=110 Identities=21% Similarity=0.422 Sum_probs=103.9
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
+..+|||+|+|++++|+.|+|+++||++++.|+|.+||+|+++.|+|+||+ +.|+||+| +++|++++|+|+|||..+
T Consensus 255 ~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~ 331 (386)
T PRK14289 255 GGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLRLRNKGLPSVN 331 (386)
T ss_pred CCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEEECCCCcCCCC
Confidence 456899999999999999999999999999999999999999999999998 89999999 999999999999999765
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+ +.+|||||+|+|.||+. |+++|+++|++|+..
T Consensus 332 ~-~~~GDL~v~~~v~~P~~--l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 332 G-YGTGDLLVNVSVYIPET--LSKEEKQTLEKMENS 364 (386)
T ss_pred C-CCCCcEEEEEEEEeCCC--CCHHHHHHHHHHHhh
Confidence 4 47899999999999998 999999999999974
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=8.6e-25 Score=191.91 Aligned_cols=106 Identities=25% Similarity=0.461 Sum_probs=100.5
Q ss_pred ccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCC
Q psy4965 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYE 85 (179)
Q Consensus 6 GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~ 85 (179)
|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|++|+| +++|++++|+|+|||..++ ..
T Consensus 243 GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~~i~g~G~p~~~~-~~ 318 (371)
T PRK14292 243 GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGP-QVIEVKPG--TQHGDLHRLRGQGMPRLQG-AG 318 (371)
T ss_pred CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCC-EEEecCCC--cCCCcEEEECCCCCCCCCC-CC
Confidence 99999999999999999999999999999999999999999999999 58999999 9999999999999998654 36
Q ss_pred CCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 86 KGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 86 ~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
+|||||+|+|.||+. |+++++++|++++..
T Consensus 319 ~GDL~V~~~v~~P~~--l~~~q~~ll~~~~~~ 348 (371)
T PRK14292 319 TGDLIVEYEIAVPKQ--LSPEAREALEAYARA 348 (371)
T ss_pred CCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 899999999999998 999999999999853
No 33
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.90 E-value=9.6e-24 Score=148.29 Aligned_cols=81 Identities=37% Similarity=0.549 Sum_probs=70.0
Q ss_pred cEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCH
Q psy4965 26 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNND 105 (179)
Q Consensus 26 DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~ 105 (179)
||++++.|||++|++|+++.|+|+||+.+.|++|++ +++|+.++|+|+|||...++..+|||||+|+|.||++ ||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~--ls~ 76 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKK--LSP 76 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SS--TSH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCC--CCH
Confidence 899999999999999999999999999999999999 9999999999999999887568999999999999999 999
Q ss_pred HHHHH
Q psy4965 106 AKLKE 110 (179)
Q Consensus 106 ~~~~~ 110 (179)
+|+++
T Consensus 77 ~qk~l 81 (81)
T PF01556_consen 77 EQKEL 81 (81)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88764
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.89 E-value=1.5e-22 Score=187.93 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=91.9
Q ss_pred CccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCC
Q psy4965 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPY 84 (179)
Q Consensus 5 ~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~ 84 (179)
+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..+ +
T Consensus 726 ~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~~--~ 800 (871)
T TIGR03835 726 CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKTK--Y 800 (871)
T ss_pred CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCCC--C
Confidence 499999999999999999999999999999999999999999999998 99999999 999999999999999543 4
Q ss_pred CCCCeEEEEEEe-CCCCCCCCHHHHHHHHHh
Q psy4965 85 EKGTLYIKFDVQ-FPESYFNNDAKLKELEAL 114 (179)
Q Consensus 85 ~~GdL~I~f~V~-fP~~~~l~~~~~~~l~~~ 114 (179)
.+|||||+|.|. +++++.-+.-|.+.+-+|
T Consensus 801 ~RGDLyV~f~V~~~~k~~~~~n~qv~~f~~l 831 (871)
T TIGR03835 801 DKGSLIVHLYYSSVMKKNDRTNVQVQQFNKL 831 (871)
T ss_pred CCCCEEEEEEEeeccccCCcCChHHHHHHHH
Confidence 689999999996 456655555555544443
No 35
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=6.2e-11 Score=101.31 Aligned_cols=70 Identities=27% Similarity=0.438 Sum_probs=63.6
Q ss_pred CeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCC
Q psy4965 20 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99 (179)
Q Consensus 20 F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~ 99 (179)
+.|+|.||++++.|||.||++|+++.| +++|+.+.|+||+| +++|++++++|+|++. |||||+|.|+-+.
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 467899999999999999999999998 58898899999999 9999999999999962 9999999998433
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.09 E-value=3.7e-10 Score=97.09 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=64.2
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEE----eccC--C-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCC
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVI----KHLD--D-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT 88 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i----~~ld--G-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~Gd 88 (179)
|+|.||++++.|||.||++|+.+.| .+++ | +.+.|+||+| +++|++++++|+|||...+ ..+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGENG-GPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCCCC-CCCcc
Confidence 4689999999999999999996554 3444 3 5699999999 9999999999999997543 46899
Q ss_pred eEEEEEEeCCCCC
Q psy4965 89 LYIKFDVQFPESY 101 (179)
Q Consensus 89 L~I~f~V~fP~~~ 101 (179)
|||+|+|. |...
T Consensus 192 l~v~i~v~-ph~~ 203 (306)
T PRK10266 192 LWLVIHIA-PHPL 203 (306)
T ss_pred EEEEEEEc-CCCC
Confidence 99999998 8664
No 37
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=1.9e-09 Score=95.50 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=67.2
Q ss_pred eCCcEEEEeccCHHHHhcCcEEEEecc-----------------------------------------------------
Q psy4965 23 QGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------- 49 (179)
Q Consensus 23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------- 49 (179)
+|.|+.+.+.|||.||+.|+++.|...
T Consensus 126 ~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G 205 (386)
T PRK14289 126 RGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNG 205 (386)
T ss_pred CCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCc
Confidence 588999999999999999988766421
Q ss_pred -------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCHHHHH
Q psy4965 50 -------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 109 (179)
Q Consensus 50 -------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~~~~~ 109 (179)
+.+.+.|+||+| +++|++++|+|+|||...+ ..+|||||+|+|..|+. +..+...
T Consensus 206 ~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~v~v~~~~~--f~r~g~D 279 (386)
T PRK14289 206 EGKIIKKKCKKCGGEGIVYGEEVITVKIPAG--VAEGMQLSMNGKGNAGKHG-GVNGDLLVVIEEEPHPE--LIRDEND 279 (386)
T ss_pred cccccCcCCCCCCCCcEEeeeEEEEEEeCCC--CCCCCEEEEeccccCCCCC-CCCccEEEEEEEecCCc--ccccccc
Confidence 113689999999 9999999999999997543 46899999999999987 5554433
No 38
>KOG0713|consensus
Probab=98.85 E-value=4e-10 Score=97.18 Aligned_cols=100 Identities=41% Similarity=0.629 Sum_probs=89.2
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
+.|||+.|.+..-.|+.|.|+++++++++.+++..++.|+...+.|+|+..+.++.... ..|+..++..++|||..++
T Consensus 229 ~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~--~~p~~~~~~~~~~~~~l~~ 306 (336)
T KOG0713|consen 229 GVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKI--TWPGARTRKKGEGMPLLKN 306 (336)
T ss_pred cccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhc--cccchhhhhhhccchhhhc
Confidence 46999999999999999999999999999999999999999999999998766665444 8899999999999997766
Q ss_pred CCCCCCeEEEEEEeCCCCCCCCH
Q psy4965 83 PYEKGTLYIKFDVQFPESYFNND 105 (179)
Q Consensus 83 ~~~~GdL~I~f~V~fP~~~~l~~ 105 (179)
....|++|+.|.+.||.+ .++.
T Consensus 307 ~~~~~~~~~t~~~~~~~~-~~~~ 328 (336)
T KOG0713|consen 307 RNEKGNLYVTFDVEFPKS-SLSD 328 (336)
T ss_pred cchhcceeEEecccCccc-ccch
Confidence 678999999999999965 2454
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=1.7e-08 Score=89.12 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=43.8
Q ss_pred EEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCHHHHH
Q psy4965 53 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 109 (179)
Q Consensus 53 ~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~~~~~ 109 (179)
.+.|+||+| +++|++++|+|+|+|...+ ..+|||||+|.|..|.. ++.+...
T Consensus 217 ~~~V~IppG--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~v~v~~~~~--f~r~g~D 268 (374)
T PRK14293 217 KLKINIPAG--VDTGTRLRVSGEGDAGLRG-GPPGDLYVYLFVKNDPE--FRRDGIN 268 (374)
T ss_pred EEEEEeCCC--CCCCCEEEEccCccCCCCC-CCCcCEEEEEEEeCCCc--cChhhhc
Confidence 578999999 9999999999999987543 46799999999999887 6665543
No 40
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=2.8e-08 Score=87.78 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=64.4
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+++.|||.||+.|.++.|..-
T Consensus 115 ~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 194 (373)
T PRK14301 115 QAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGR 194 (373)
T ss_pred CCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceee
Confidence 4689999999999999999998876431
Q ss_pred ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
..+.+.|.||+| +++|++++++|+|+|...+ +..|||||+|.|.-+..
T Consensus 195 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDLiv~i~v~~h~~ 258 (373)
T PRK14301 195 VITHPCPKCKGSGIVQQTRELKVRIPAG--VDTGSRLRLRGEGEPGVHG-GPPGDLYVVITVEDDKI 258 (373)
T ss_pred ecCCCCCCCCCCceeccceEEEEEeCCC--CcCCCEEEEeccccCCCCC-CCCcCEEEEEEEEECCC
Confidence 114699999999 9999999999999987643 46899999999997765
No 41
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.77 E-value=2.9e-08 Score=87.65 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=63.2
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------D------------------------------------------- 50 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d------------------------------------------- 50 (179)
++|.|+.+.+.|||.||+.|.++.|... +
T Consensus 121 ~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 200 (372)
T PRK14286 121 QRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGT 200 (372)
T ss_pred CCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceee
Confidence 4688999999999999999998776431 1
Q ss_pred -----------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 51 -----------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 51 -----------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
-+.+.|+||+| +++|++++++|+|+|...+ ..+|||||.|+|. |..
T Consensus 201 ~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~-~h~ 263 (372)
T PRK14286 201 VISNPCKTCGGQGLQEKRRTINIKIPPG--VETGSRLKVSGEGEAGPNG-GPHGDLYVVTHIK-KHE 263 (372)
T ss_pred EecccCCCCCCCcEEecceEEEEEECCC--CCCCCEEEECCccccCCCC-CCCceEEEEEEEc-cCC
Confidence 15799999999 9999999999999998754 4679999999997 654
No 42
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.74 E-value=4.3e-08 Score=86.52 Aligned_cols=73 Identities=27% Similarity=0.399 Sum_probs=61.4
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|.++.|..-
T Consensus 109 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 188 (371)
T PRK14287 109 RQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCE 188 (371)
T ss_pred CCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCC
Confidence 4689999999999999999987765320
Q ss_pred --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeC
Q psy4965 50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQF 97 (179)
Q Consensus 50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~f 97 (179)
+.+.+.|.||+| +++|++++++|+|+|...+ +..|||||+|+|.-
T Consensus 189 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~G~G~~~~~~-~~~GDL~v~i~v~~ 253 (371)
T PRK14287 189 GTGKIIKQKCATCGGKGKVRKRKKINVKVPAG--IDHGQQLRVSGQGEAGVNG-GPPGDLYVVFNVKP 253 (371)
T ss_pred CCCccccccCCCCCCeeEEeeeEEEEEEECCc--CCCCCEEEEccCCcCCCCC-CCCccEEEEEEEec
Confidence 125689999999 9999999999999997654 47899999999974
No 43
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.73 E-value=5.6e-08 Score=85.60 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=63.8
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+++.|||.||+.|.++.|..-
T Consensus 117 ~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 196 (365)
T PRK14285 117 EKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGK 196 (365)
T ss_pred CCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCccc
Confidence 4688999999999999999988766430
Q ss_pred ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
..+.+.|+||+| +++|++++++|+|++..++ ...|||||+|.|.-+..
T Consensus 197 ~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~~h~~ 260 (365)
T PRK14285 197 IISNPCKSCKGKGSLKKKETIELKIPAG--IDDNQQIKMRGKGSVNPDN-QQYGDLYIKILIKPHKI 260 (365)
T ss_pred ccCCCCCCCCCCCEEeccEEEEEEECCC--CCCCCEEEEeeccccCCCC-CCCCCEEEEEEEecCCC
Confidence 014689999999 9999999999999987653 35799999999997665
No 44
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=6.5e-08 Score=85.53 Aligned_cols=76 Identities=28% Similarity=0.389 Sum_probs=63.7
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+++.|||.+|+.|+++.|...
T Consensus 117 ~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 196 (378)
T PRK14283 117 QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQ 196 (378)
T ss_pred cCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCC
Confidence 4688999999999999999988765321
Q ss_pred --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
+.+.+.|.||+| +++|++++++|+|||...+ +.+|||||+|+|.-+..
T Consensus 197 G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG--~~~G~~i~l~g~G~~~~~~-~~~GDLiv~i~v~~~~~ 264 (378)
T PRK14283 197 GEGKIVEKPCSNCHGKGVVRETKTISVKIPAG--VETGSRLRVSGEGEMGDRG-GEPGDLYVVIKVKPHKI 264 (378)
T ss_pred ccceecCCCCCCCCCceeeccceeEEEEECCC--CCCCcEEEEeccccCCCCC-CCCccEEEEEEEEcCCC
Confidence 114688999999 9999999999999997754 57899999999986654
No 45
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.71 E-value=5.8e-08 Score=86.23 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=63.4
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|+++.|..-
T Consensus 137 ~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 216 (389)
T PRK14295 137 RRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGL 216 (389)
T ss_pred CCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeE
Confidence 4688999999999999999998776431
Q ss_pred ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCC
Q psy4965 50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESY 101 (179)
Q Consensus 50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~ 101 (179)
..+.+.|.||+| +++|++++++|+|++...+ ..+|||||+|.|. |...
T Consensus 217 ~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~-~h~~ 280 (389)
T PRK14295 217 IADDPCLVCKGSGRAKSSRTMQVRIPAG--VSDGQRIRLRGKGAPGERG-GPAGDLYVVVHVD-PHPV 280 (389)
T ss_pred EeccCCCCCCCCceEeeeeEEEEEeCCC--CCCCCEEEEcccccCCCCC-CCCccEEEEEEEe-cCCC
Confidence 114699999999 9999999999999997654 4689999999997 6543
No 46
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=5.8e-08 Score=85.83 Aligned_cols=75 Identities=32% Similarity=0.492 Sum_probs=62.8
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------D------------------------------------------- 50 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d------------------------------------------- 50 (179)
++|.|+.+.+.|||.||+.|.++.|..- +
T Consensus 114 ~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 193 (376)
T PRK14280 114 RQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCN 193 (376)
T ss_pred ccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCC
Confidence 4688999999999999999988766430 0
Q ss_pred ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
.+.+.|.||+| +++|++++++|+|+|...+ ..+|||||+|.|. |..
T Consensus 194 G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G--~~~G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~-~h~ 260 (376)
T PRK14280 194 GTGQEIKEKCPTCHGKGKVRKRKKINVKIPAG--VDNGQQIRVSGEGEPGVNG-GPAGDLYVVFRVR-PHE 260 (376)
T ss_pred CCCceecCCCCCCCCceEEEEEEEEEEEeCCC--CcCCcEEEEcccccCCCCC-CCCcCEEEEEEEe-cCC
Confidence 14689999999 9999999999999997654 4789999999998 544
No 47
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=6.4e-08 Score=85.79 Aligned_cols=75 Identities=29% Similarity=0.462 Sum_probs=62.1
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------D------------------------------------------- 50 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d------------------------------------------- 50 (179)
++|.|+.+.+.|||.|++.|.++.|..- +
T Consensus 126 ~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 205 (386)
T PRK14277 126 QKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCH 205 (386)
T ss_pred CCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCC
Confidence 3688999999999999999988766431 1
Q ss_pred ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
.+.+.|+||+| +++|++++|+|+|||...+ ..+|||||+|+|+ |..
T Consensus 206 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~-~h~ 272 (386)
T PRK14277 206 GEGKIITDPCNKCGGTGRIRRRRKIKVNIPAG--IDDGQMITLRGEGEPGIKG-GPNGDLYIVIKVK-PHP 272 (386)
T ss_pred cceeeccCCCCCCCCCcEEeeeeEEEEecCCC--ccCCcEEEEccccccCCCC-CCCccEEEEEEEe-cCC
Confidence 14689999999 9999999999999996543 4689999999998 544
No 48
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=5.6e-08 Score=85.97 Aligned_cols=75 Identities=29% Similarity=0.357 Sum_probs=62.8
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------D------------------------------------------- 50 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d------------------------------------------- 50 (179)
++|.|+.+.+.|||.||+.|.++.|..- +
T Consensus 112 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 191 (377)
T PRK14298 112 RRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCH 191 (377)
T ss_pred CCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCC
Confidence 4688999999999999999988776431 1
Q ss_pred ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
.+.+.|.|||| +++|++++++|+|++...+ +..|||||+|.|. |..
T Consensus 192 G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~-~h~ 258 (377)
T PRK14298 192 GRGQVIESPCPVCSGTGKVRKTRKITVNVPAG--ADSGLRLKLSGEGEAGSPG-APSGDLYIVLHVK-EHD 258 (377)
T ss_pred CCCcccCCCCCCCCCccEEEEEEEEEecCCCC--CCCCCEEEEecccCCCCCC-CCCcCEEEEEEEe-cCC
Confidence 14689999999 9999999999999996544 5789999999988 654
No 49
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.69 E-value=5.5e-08 Score=85.69 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=63.7
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|+++.|...
T Consensus 110 ~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 189 (371)
T PRK14292 110 ARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTC 189 (371)
T ss_pred cCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCC
Confidence 3688999999999999999988765431
Q ss_pred ---------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCHH
Q psy4965 50 ---------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDA 106 (179)
Q Consensus 50 ---------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~~ 106 (179)
+.+.+.|.||+| +++|++++++|+|++...+ .|||||+|+|..+.. ++.+
T Consensus 190 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~G~G~~~~~~---~GDL~v~i~v~~h~~--f~r~ 260 (371)
T PRK14292 190 RGEGQIITDPCTVCRGRGRTLKAETVKVKLPRG--IDEGYRIRVAGMGNEGPGG---NGDLYVHIEMEPHPE--LRRE 260 (371)
T ss_pred cccceecCCCCCCCCCceEEeecceEEEEECCC--CCCCcEEEEecCcCCCCCC---CCCEEEEEEEecCCc--cccc
Confidence 124588999999 9999999999999996432 399999999998776 5543
No 50
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.69 E-value=7.8e-08 Score=85.11 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=62.6
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|+++.|..-
T Consensus 117 ~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 196 (380)
T PRK14276 117 RQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCH 196 (380)
T ss_pred CCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCC
Confidence 4689999999999999999988766421
Q ss_pred -------------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 -------------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 -------------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
. .+.+.|.||+| +++|++++++|+|+|...+ ..+|||||+|+|. |..
T Consensus 197 G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~-~h~ 263 (380)
T PRK14276 197 GTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAG--VETGQQIRLQGQGEAGFNG-GPYGDLYVVFRVE-PSK 263 (380)
T ss_pred CCCccccCCCCCCCCceEEEEEEEEEEEeCCC--ccCCcEEEEeccccCCCCC-CCCcCEEEEEEEE-ECc
Confidence 0 14689999999 9999999999999998654 4689999999998 443
No 51
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.68 E-value=7.9e-08 Score=84.89 Aligned_cols=93 Identities=22% Similarity=0.359 Sum_probs=70.2
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|.++.|..-
T Consensus 120 ~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~ 199 (372)
T PRK14296 120 TKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCN 199 (372)
T ss_pred CCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcC
Confidence 3688999999999999999988766421
Q ss_pred --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCC------
Q psy4965 50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFN------ 103 (179)
Q Consensus 50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l------ 103 (179)
..+.+.|+||+| +++|++++++|+|++...+ +..|||||+|+|. |...|-
T Consensus 200 G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~v~v~-~h~~F~R~~G~D 275 (372)
T PRK14296 200 GAGKIIKNKCKNCKGKGKYLERKKIEVNIPKG--IRPNQQIKLSQKGHASLNN-GVNGDLIIDIYLK-ESKVFEIINNND 275 (372)
T ss_pred CcceeecccccCCCCceEEEEEEEEEEEECCC--CCCCCEEEEeccccCCCCC-CCCccEEEEEEEe-CCCCEEEeCCCc
Confidence 014689999999 9999999999999987543 4689999999998 543221
Q ss_pred --CHHHHHHHHHhcCCC
Q psy4965 104 --NDAKLKELEALLSPR 118 (179)
Q Consensus 104 --~~~~~~~l~~~l~~~ 118 (179)
....+.+.+.||-..
T Consensus 276 L~~~~~Isl~eAllG~~ 292 (372)
T PRK14296 276 ILMTYNISYLDAILGNE 292 (372)
T ss_pred EEEEEecCHHHHhCCCE
Confidence 222355566666543
No 52
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.67 E-value=8.4e-08 Score=85.28 Aligned_cols=75 Identities=27% Similarity=0.487 Sum_probs=62.9
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+++.|||.||+.|.++.|..-
T Consensus 144 ~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 223 (392)
T PRK14279 144 RRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGS 223 (392)
T ss_pred CCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeE
Confidence 4688999999999999999998776431
Q ss_pred ---------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 ---------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 ---------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
. .+.+.|.||+| +++|++++++|+|++...+ ...|||||+|.|. |..
T Consensus 224 ~i~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~-~h~ 286 (392)
T PRK14279 224 IIEDPCEECKGTGVTTRTRTINVRIPPG--VEDGQRIRLAGQGEAGLRG-APSGDLYVTVHVR-PDK 286 (392)
T ss_pred EeCCcCCCCCCCeEEEEeeeeEEEeCCC--CCCCcEEEEeCCccCCCCC-CCCCCEEEEEEEe-cCC
Confidence 1 14699999999 9999999999999987653 4679999999997 544
No 53
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.67 E-value=9.6e-08 Score=84.51 Aligned_cols=76 Identities=24% Similarity=0.401 Sum_probs=62.9
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|+++.|..-
T Consensus 119 ~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 198 (380)
T PRK14297 119 QRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCG 198 (380)
T ss_pred CCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCC
Confidence 3688999999999999999988766430
Q ss_pred --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
..+.+.|.||+| +++|++++++|+|++...+ ...|||||+|.|..++.
T Consensus 199 G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G--~~~G~~I~l~g~G~~~~~~-~~~GDL~v~v~v~~h~~ 266 (380)
T PRK14297 199 GSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAG--VDTGNVIPLRGQGEHGKNG-GPTGDLYINIRVAPHKT 266 (380)
T ss_pred CCceEcCCCCCCCCCCeEEEeEeEEEEEeCCC--CCCCcEEEEecCccCCCCC-CCCccEEEEEEEcCCCC
Confidence 114689999999 9999999999999986543 46799999999986654
No 54
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=1.2e-07 Score=83.50 Aligned_cols=75 Identities=31% Similarity=0.464 Sum_probs=62.7
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------D------------------------------------------- 50 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d------------------------------------------- 50 (179)
++|.|+.+.+.|||.||+.|.++.|... +
T Consensus 113 ~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 192 (371)
T PRK10767 113 RRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGK 192 (371)
T ss_pred CCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCcee
Confidence 4689999999999999999988776431 1
Q ss_pred -----------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 51 -----------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 51 -----------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
.+.+.|.||+| +++|++++++|+|++...+ ..+|||||.|+|. |..
T Consensus 193 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~-~h~ 255 (371)
T PRK10767 193 IIKDPCKKCHGQGRVEKEKTLSVKIPAG--VDTGDRIRLSGEGEAGERG-GPAGDLYVQIHVK-EHP 255 (371)
T ss_pred ECCCCCCCCCCCceEeeeeeEEEecCCC--CCCCcEEEEecCccCCCCC-CCCcCEEEEEEEe-eCC
Confidence 14689999999 9999999999999997654 4789999999987 554
No 55
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=1.1e-07 Score=84.55 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=62.0
Q ss_pred eCCcEEEEeccCHHHHhcCcEEEEecc-----------------------------------------------------
Q psy4965 23 QGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------- 49 (179)
Q Consensus 23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------- 49 (179)
+|.|+.+.+.|||.||+.|+++.|..-
T Consensus 135 ~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 214 (397)
T PRK14281 135 PGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGE 214 (397)
T ss_pred CCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcce
Confidence 588999999999999999998776430
Q ss_pred ------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 ------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 ------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
+.+.+.|+||+| +++|++++++|+|++...+ +..|||||+|.+. |..
T Consensus 215 G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~~~-~h~ 279 (397)
T PRK14281 215 GRVVKDRCPACYGEGIKQGEVTVKVTVPAG--VQDGNYLTLRGQGNAGPRG-GAPGDLIVVIEEK-PHE 279 (397)
T ss_pred eeeeCCCCCCCCCCccEecceEEEEecCCC--CCCCCEEEEecccccCCCC-CCCCcEEEEEEEc-CCC
Confidence 114689999999 9999999999999997654 4689999999976 654
No 56
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=1.1e-07 Score=83.75 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=62.8
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------D------------------------------------------- 50 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d------------------------------------------- 50 (179)
++|.|+.+.+.|||.||+.|.++.|... +
T Consensus 123 ~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 202 (369)
T PRK14282 123 RRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCG 202 (369)
T ss_pred CCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCC
Confidence 4689999999999999999998876431 1
Q ss_pred --------------C-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 51 --------------D-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 51 --------------G-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
| +.+.|.||+| +.+|++++++|+|++...+ +..|||||+|.|. |..
T Consensus 203 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~i~i~v~-~h~ 269 (369)
T PRK14282 203 GTGKIPGEYCHECGGSGRIRRRVRTTVKIPAG--VEDGTVLRITGGGNAGYYG-GPYGDLYVIVRVR-PDP 269 (369)
T ss_pred CcceeCCCCCCCCCCceeEEEEEEEEEEeCCC--CCCCCEEEEecccCCCCCC-CCCCCEEEEEEEe-cCC
Confidence 1 4689999999 9999999999999986644 4689999999998 544
No 57
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.65 E-value=1.4e-07 Score=82.50 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=63.6
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------D------------------------------------------- 50 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d------------------------------------------- 50 (179)
++|.|+.+++.|||.||+.|.++.|..- +
T Consensus 114 ~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 193 (354)
T TIGR02349 114 RRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCG 193 (354)
T ss_pred CCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCC
Confidence 4688999999999999999988776431 1
Q ss_pred ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
.+.+.|+||+| +++|++++++|+|++...+ ...|||||+|+|..+..
T Consensus 194 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~v~i~v~~h~~ 261 (354)
T TIGR02349 194 GEGKIIKEPCSTCKGKGRVKERKTITVKIPAG--VDTGQRLRVSGKGNAGENG-GPNGDLYVVIRVKPHKI 261 (354)
T ss_pred CcceecCCCCCCCCCCcEecccceEEEEECCC--CCCCCEEEEecCccCCCCC-CCCCCEEEEEEEecCcc
Confidence 14699999999 9999999999999986543 46799999999996654
No 58
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.3e-07 Score=83.34 Aligned_cols=92 Identities=28% Similarity=0.422 Sum_probs=72.2
Q ss_pred eeeCCcEEEEeccCHHHHhcCcEEEEe--cc-------------------------------------------------
Q psy4965 21 QRQGINLVTTETITLTEALCGFTKVIK--HL------------------------------------------------- 49 (179)
Q Consensus 21 ~R~g~DL~~~~~Isl~eAl~G~~~~i~--~l------------------------------------------------- 49 (179)
.|+|.||.+.++|||.||+.|.++.|. +.
T Consensus 112 ~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G 191 (371)
T COG0484 112 PRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNG 191 (371)
T ss_pred cccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCcc
Confidence 568999999999999999999987764 21
Q ss_pred -------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCC-------
Q psy4965 50 -------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFN------- 103 (179)
Q Consensus 50 -------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l------- 103 (179)
..+.|.|+||+| +..|+.++++|+|-+...+ +..|||||.|.|+ |...|.
T Consensus 192 ~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaG--v~~g~~ir~~g~G~~g~~G-gp~GDLyv~i~v~-~h~~F~R~g~dL~ 267 (371)
T COG0484 192 TGKIIKDPCGKCKGKGRVKKKKSISVNIPAG--VDDGDRIRLSGEGEAGPNG-GPAGDLYVFVHVK-PHPIFERDGDDLY 267 (371)
T ss_pred ceeECCCCCCCCCCCCeEeeeeEEEEECCCC--CccCCEEEEecCcccCCCC-CCCccEEEEEEee-cCCCeEECCCceE
Confidence 125799999999 9999999999999998754 5789999999998 554331
Q ss_pred CHHHHHHHHHhcC
Q psy4965 104 NDAKLKELEALLS 116 (179)
Q Consensus 104 ~~~~~~~l~~~l~ 116 (179)
.+.-+..+..+|-
T Consensus 268 ~~~~Is~~~AalG 280 (371)
T COG0484 268 CEVPISFTEAALG 280 (371)
T ss_pred eccccCHHHHhcC
Confidence 2233445555654
No 59
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.63 E-value=1.7e-07 Score=82.59 Aligned_cols=77 Identities=26% Similarity=0.432 Sum_probs=63.6
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|.++.|...
T Consensus 115 ~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 194 (366)
T PRK14294 115 RAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGK 194 (366)
T ss_pred CCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCe
Confidence 3688999999999999999998776431
Q ss_pred ---------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCC
Q psy4965 50 ---------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF 102 (179)
Q Consensus 50 ---------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~ 102 (179)
. .+.+.|.||+| +++|++++++|+|.+...+ +..|||||+|.|. |...|
T Consensus 195 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~v~i~v~-~h~~F 259 (366)
T PRK14294 195 VIVSPCKTCHGQGRVRVSKTVQVKIPAG--VDTGSRLRLRGEGEAGVRG-GPPGDLYVFLTVE-PHEFF 259 (366)
T ss_pred ecCcCCCCCCCceEeecceeEEEecCCC--CcCCcEEEEccCccCCCCC-CCCCcEEEEEEEc-cCCcc
Confidence 0 14689999999 9999999999999986543 4689999999998 65533
No 60
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.53 E-value=4.2e-07 Score=80.74 Aligned_cols=75 Identities=27% Similarity=0.356 Sum_probs=62.6
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|+++.|..-
T Consensus 129 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 208 (391)
T PRK14284 129 RQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGR 208 (391)
T ss_pred CCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCc
Confidence 4688999999999999999998766431
Q ss_pred ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
..+.|.|.||+| ++.|++++++|+|-....+ +..|||||+|+|. |..
T Consensus 209 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~-~h~ 271 (391)
T PRK14284 209 VITDPCSVCRGQGRIKDKRSVHVHIPAG--VDSGMRLKMEGYGDAGQNG-APAGDLYVFIDVE-PHP 271 (391)
T ss_pred ccCCcCCCCCCcceecceEEEEEEECCC--CCCCCEEEEeccccCCCCC-CCCCCEEEEEEEe-cCC
Confidence 115789999999 9999999999999876643 4679999999998 554
No 61
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.52 E-value=4e-07 Score=80.57 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=62.1
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|.++.|..-
T Consensus 110 ~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 189 (378)
T PRK14278 110 RPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCR 189 (378)
T ss_pred CCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCC
Confidence 4689999999999999999988766421
Q ss_pred --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
..+.+.|.|||| +++|+.++++|+|.+...+ +..|||||+|+|. |..
T Consensus 190 G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~~~-~h~ 256 (378)
T PRK14278 190 GVGEVIPDPCHECAGDGRVRARREITVKIPAG--VGDGMRIRLAAQGEVGPGG-GPAGDLYVEVHEQ-PHD 256 (378)
T ss_pred ccceeeCCCCCCCCCceeEecceEEEEEECCC--CCCCcEEEEccCcCCCCCC-CCCCCEEEEEEEC-cCC
Confidence 014689999999 9999999999999987653 4579999999987 654
No 62
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.51 E-value=6e-07 Score=79.22 Aligned_cols=93 Identities=22% Similarity=0.231 Sum_probs=70.7
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc--------CC------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL--------DD------------------------------------------ 51 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------dG------------------------------------------ 51 (179)
++|.|+.+.+.|||.||+.|.++.|..- +|
T Consensus 111 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 190 (369)
T PRK14288 111 SIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI 190 (369)
T ss_pred CCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE
Confidence 4689999999999999999988766431 11
Q ss_pred -----------------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC------CCCCHHHH
Q psy4965 52 -----------------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES------YFNNDAKL 108 (179)
Q Consensus 52 -----------------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~------~~l~~~~~ 108 (179)
+.+.|.||+| +++|+.++++|+|.+... +..|||||+|.|.-+.. +......+
T Consensus 191 ~~~~C~~C~G~g~v~~~~~l~V~IP~G--~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I 266 (369)
T PRK14288 191 IKTPCQACKGKTYILKDEEIDAIIPEG--IDDQNRMVLKNKGNEYEK--GKRGDLYLEARVKEDEHFKREGCDLFIEAPV 266 (369)
T ss_pred ccccCccCCCcceEEEEEEEEEecCCC--CCCCCEEEEccCccCCCC--CCCCCEEEEEEEEECCCcEEeCCEEEEEEec
Confidence 4689999999 999999999999998654 46899999999985543 11223335
Q ss_pred HHHHHhcCCC
Q psy4965 109 KELEALLSPR 118 (179)
Q Consensus 109 ~~l~~~l~~~ 118 (179)
.+.+.||-..
T Consensus 267 sl~eAllG~~ 276 (369)
T PRK14288 267 FFTTIALGHT 276 (369)
T ss_pred CHHHHhcCCE
Confidence 5566666543
No 63
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.50 E-value=4.8e-07 Score=80.13 Aligned_cols=74 Identities=26% Similarity=0.380 Sum_probs=61.2
Q ss_pred eCCcEEEEeccCHHHHhcCcEEEEecc--------CC-------------------------------------------
Q psy4965 23 QGINLVTTETITLTEALCGFTKVIKHL--------DD------------------------------------------- 51 (179)
Q Consensus 23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l--------dG------------------------------------------- 51 (179)
+|.|+.+.+.|||.||+.|.++.|... +|
T Consensus 128 ~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 128 KGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL 207 (382)
T ss_pred CCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence 689999999999999999998776431 11
Q ss_pred ----------------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 52 ----------------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 52 ----------------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
+.+.|.||+| +..|++++++|+|-....+ +..|||||+|++. |..
T Consensus 208 ~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~g-~~~GDL~v~i~~~-~h~ 268 (382)
T PRK14291 208 REPCSKCNGRGLVIKKETIKVRIPPG--VDNGSKLRVPGKGHAGRFG-GPPGDLYIIVKVK-PHP 268 (382)
T ss_pred ccCCCCCCCCceEEeeeEEEEEeCCC--CCCCCEEEEecCcCCCCCC-CCCccEEEEEEEc-cCC
Confidence 4689999999 9999999999999865433 4689999999987 544
No 64
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.49 E-value=5e-07 Score=79.79 Aligned_cols=75 Identities=28% Similarity=0.436 Sum_probs=61.9
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------- 49 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------- 49 (179)
++|.|+.+.+.|||.||+.|+++.|...
T Consensus 116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 195 (372)
T PRK14300 116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQ 195 (372)
T ss_pred CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccce
Confidence 4688999999999999999988766421
Q ss_pred ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
+.+.+.|+||+| +++|++++++|+|.+...+ ...|||||+|.|. |..
T Consensus 196 ~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~-~h~ 258 (372)
T PRK14300 196 IIKNPCKKCHGMGRYHKQRNLSVNIPAG--VENGTRIRHTGEGEAGIRG-GNSGDLYVDIAIK-PHD 258 (372)
T ss_pred EeCCCCCCCCCceEEEeeEEEEEEECCC--CCCCcEEEEeccccCCCCC-CCCCCEEEEEEEC-CCC
Confidence 114678999999 9999999999999986543 4679999999986 654
No 65
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.30 E-value=3.1e-06 Score=76.02 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=37.7
Q ss_pred cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 52 RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 52 r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
+.+.|.||+| +..|+.++++|+|-...+ +..|||||.|.++ |..
T Consensus 224 ~~l~V~Ip~G--~~dG~~I~~~G~Gd~~~~--~~pGDLiv~I~~~-ph~ 267 (421)
T PTZ00037 224 KILEVNIDKG--VPNQHKITFHGEADEKPN--EIPGNVVFILNEK-PHD 267 (421)
T ss_pred eEEEEeeCCC--CCCCcEEEEecccCCCCC--CCCCcEEEEEEec-CCC
Confidence 4689999999 999999999999987654 4689999999886 654
No 66
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.29 E-value=3e-06 Score=74.69 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=58.7
Q ss_pred eCCcEEEEeccCHHHHhcCcEEEEecc-----------------------------------------------------
Q psy4965 23 QGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------- 49 (179)
Q Consensus 23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------- 49 (179)
++.|+.+.+.|||.||+.|+++.|..-
T Consensus 121 ~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~ 200 (365)
T PRK14290 121 IDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGR 200 (365)
T ss_pred CCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCc
Confidence 478999999999999999988766431
Q ss_pred ------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965 50 ------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 50 ------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~ 100 (179)
.-+.+.|.||+| +..|+.++++|+|-. . .+..|||||.|+|. |..
T Consensus 201 G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~-~--~~~~GDL~v~v~v~-~h~ 263 (365)
T PRK14290 201 GRIPEEKCPRCNGTGTVVVNEDISVKIPKG--ATDNLRLRVKGKGQS-Y--GGRTGDLYVVLRVN-NDP 263 (365)
T ss_pred eeEccCCCCCCCCceeEEEeeEEEEEECCC--CCCCcEEEEccccCC-C--CCCCCCEEEEEEEc-CCC
Confidence 013589999999 999999999999964 2 25789999999987 443
No 67
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.19 E-value=9e-06 Score=77.14 Aligned_cols=95 Identities=22% Similarity=0.203 Sum_probs=71.0
Q ss_pred CCCCeeeCCcEEEEeccCHHHHhcCcEEEEec----c--CC-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCC
Q psy4965 17 HDRFQRQGINLVTTETITLTEALCGFTKVIKH----L--DD-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNP 83 (179)
Q Consensus 17 h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~----l--dG-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~ 83 (179)
.+.|--..-||.+.+.|+|.+++.|+++.|+. + +| +.|.|+||+| ++.|++++++|+|-...+
T Consensus 649 ~~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpG--VkdGqkIRf~GeGDegpg-- 724 (871)
T TIGR03835 649 EPNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPIT--SQLNISAIFKGFGHDFGN-- 724 (871)
T ss_pred CCCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCC--CCCCCEEEeccccCCCCC--
Confidence 35566667899999999999999999988742 2 22 3699999999 999999999999987533
Q ss_pred CCCCCeEEEEEEeCCCCCC-------CCHHHHHHHHHhcCC
Q psy4965 84 YEKGTLYIKFDVQFPESYF-------NNDAKLKELEALLSP 117 (179)
Q Consensus 84 ~~~GdL~I~f~V~fP~~~~-------l~~~~~~~l~~~l~~ 117 (179)
..|||||.|.+. |...| .....+.+.+.++..
T Consensus 725 -g~GDLyVvIkVK-PHp~FrRdGdDL~~~v~ISL~EALLGg 763 (871)
T TIGR03835 725 -GCGDLKVVFKVI-PSNFFQIKNDGLHVAALVDPLVAYNGG 763 (871)
T ss_pred -CCCCEEEEEEEc-CCCCeEEECCeEEEEEecCHHHHhcCC
Confidence 349999999987 54433 122234556666654
No 68
>KOG0714|consensus
Probab=97.87 E-value=3.4e-05 Score=63.71 Aligned_cols=76 Identities=36% Similarity=0.587 Sum_probs=67.6
Q ss_pred CCCccEEEEEEEecCCCCeeeCCcEEEE--eccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCC
Q psy4965 3 QEPGDVIIVLEQKPHDRFQRQGINLVTT--ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79 (179)
Q Consensus 3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~--~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~ 79 (179)
..|-++++++..++|..|.|.+.+|.+. ..|++.+|++|+...+.+++++.+.+.+.. .++.++...+++++|||.
T Consensus 228 ~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 228 ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINK-DLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccc-cccCCCceeeecCCCCCC
Confidence 4678999999999999999999999999 999999999999999999999865554432 679999999999999985
No 69
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=62.71 E-value=9 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.575 Sum_probs=21.6
Q ss_pred CCCCeEEEEEEeCCCCCCCCHHHHHHH
Q psy4965 85 EKGTLYIKFDVQFPESYFNNDAKLKEL 111 (179)
Q Consensus 85 ~~GdL~I~f~V~fP~~~~l~~~~~~~l 111 (179)
..||+-|.|+|.+|+--.+|..+.+.+
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 569999999999999755677766554
No 70
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=57.01 E-value=27 Score=22.85 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=29.8
Q ss_pred EEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 28 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 28 ~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
.-.+.++..++... ...+.+-+|+.+-|.+|.+..+++|+++...+
T Consensus 16 ~~~v~L~~~~r~k~-r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 16 IDTVTLDWDERQKR-RLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp EEEEEE-GGGCTSS-EEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred ceEEEECHHHhcce-EEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 34455666655553 45678889999999999999999999997764
No 71
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=52.53 E-value=48 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=37.7
Q ss_pred EEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 27 LVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 27 L~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
..-++.|++.++... .+.+.+-+|+.+-|.+|.|.+++.|+++....
T Consensus 21 ~~~~V~L~~ddr~Kr-R~R~~td~G~evgl~LpRg~~L~dGDvL~~dd 67 (206)
T PRK13263 21 RAPTLTLAFDARCKS-RLAATLDTGREVAVVLPRGTVLRDGDVLVAED 67 (206)
T ss_pred eeeEEEECHHHhhcc-eEEEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 345678888776664 56778889999999999999999999997653
No 72
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=52.26 E-value=54 Score=25.06 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=56.9
Q ss_pred cEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCC
Q psy4965 26 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99 (179)
Q Consensus 26 DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~ 99 (179)
++.....+++..++.+....+.-.......+.++.+ ...+..+++.+.+.... +..++++.++.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 218 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLLGKALKSTIKAG--ALEGKALRLKGLLKSAR---GALGKARLKELSKRHP 218 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccccccccccCCcc--cccCceeeecccCCcCC---CCcccceeeeeccCCC
Confidence 678899999999999988888877776555788888 89999999999988765 4678999988877544
No 73
>PRK13261 ureE urease accessory protein UreE; Provisional
Probab=48.80 E-value=65 Score=25.06 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 28 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 28 ~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
.-.+.|+..++-.. ...+.+-+|+.+-|.+|.|..+++|+++...+
T Consensus 21 ~~~v~L~~~~r~k~-r~r~~t~~G~e~~i~L~r~~~L~dGDvL~~d~ 66 (159)
T PRK13261 21 VETVTLEADERVKR-RLRVTTDHGEEIGLRLPRGTVLRDGDVLFLDD 66 (159)
T ss_pred ceEEEECHHHhhce-eEEEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 33467777777664 45677889999999999999999999998764
No 74
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=46.31 E-value=78 Score=23.93 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=37.4
Q ss_pred EEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 28 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 28 ~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
+-++.++..++... .....+-+|+.+-|..|.|..+++|+++...+
T Consensus 20 ~d~v~L~~~~r~k~-r~r~~t~~G~ei~i~L~r~~~L~dGdvL~~d~ 65 (136)
T cd00571 20 IDTVVLTWDDRQKR-RLRLKSDHGEELGIRLPRGQVLRDGDVLFLDD 65 (136)
T ss_pred eeEEEEcHHHhhce-EEEEECCCCCEEEEECCCCCcCCCCCEEEeCC
Confidence 55677888777664 45677889999999999999999999998764
No 75
>PRK14113 urease accessory protein UreE; Provisional
Probab=38.17 E-value=1e+02 Score=23.94 Aligned_cols=45 Identities=7% Similarity=-0.121 Sum_probs=35.5
Q ss_pred EEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEc
Q psy4965 28 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV 73 (179)
Q Consensus 28 ~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~ 73 (179)
.-++.+++.+... ....+.+-.|+.+-|.+|.|.++.+|+++...
T Consensus 16 ~~~v~L~~~~r~r-~R~R~~t~~G~e~~l~L~r~~~L~dGD~L~~d 60 (152)
T PRK14113 16 YDSITLDHDTRKK-GRIKSVTDNGEEIGVFLERGHPLLVGEILKTE 60 (152)
T ss_pred ccEEEECHHHhhh-ceEEEEcCCCcEEEEECCCCcccCCCCEEEcC
Confidence 3457777755554 46678888999999999999999999999654
No 76
>PRK14112 urease accessory protein UreE; Provisional
Probab=35.86 E-value=1.4e+02 Score=23.17 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=37.6
Q ss_pred EEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 28 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 28 ~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
+=++.++..++... ...+.+-.|+.+-|.+|.|..+.+|+++....
T Consensus 22 ~d~v~L~~~dr~kr-r~R~~t~~G~ei~l~L~r~~~L~dGDvL~~dd 67 (149)
T PRK14112 22 IENIHLTSDDVLKR-VIIISSDQNVEYGIRLEEDKKLMDGDILYKDD 67 (149)
T ss_pred eEEEEeCHHHhhhc-eEEEEcCCCcEEEEECCCCCccCCCCEEEeCC
Confidence 55677888887764 55678889999999999999999999997753
No 77
>PRK14051 negative regulator GrlR; Provisional
Probab=35.74 E-value=1.8e+02 Score=21.70 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=37.9
Q ss_pred ccEEEEEEEecCCCCeeeCCcEEEEeccC--HHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCC
Q psy4965 6 GDVIIVLEQKPHDRFQRQGINLVTTETIT--LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79 (179)
Q Consensus 6 GDliv~i~~k~h~~F~R~g~DL~~~~~Is--l~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~ 79 (179)
-||++.++-..|+.-.-=+-+--+.+.|+ +.+.=.|++..-.--+..+|.|.+-+ +-=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~a----kFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYA----KFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEee----eeeeeeEEccCCCcc
Confidence 35666666666655444344444556666 44444444433222345566666543 222357899999984
No 78
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=35.61 E-value=50 Score=27.16 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCC
Q psy4965 18 DRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGE 62 (179)
Q Consensus 18 ~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~ 62 (179)
..| |--.||.+++-++=.|-.-|++..|...-|. ..|+.|+|+
T Consensus 110 ~~~-~lrtdls~tlfl~DPedYdGGeLVv~dtYg~-h~VklPAGd 152 (229)
T COG3128 110 SGF-RLRTDLSCTLFLSDPEDYDGGELVVNDTYGN-HRVKLPAGD 152 (229)
T ss_pred CCc-eeEeeeeeeeecCCccccCCceEEEeccccc-eEEeccCCC
Confidence 346 6678999999999999999999999988885 899999986
No 79
>PRK13262 ureE urease accessory protein UreE; Provisional
Probab=35.26 E-value=1.3e+02 Score=25.16 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=36.5
Q ss_pred EEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 29 TTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 29 ~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
-.+.|+..++... ...+.+-+|+.+-|.+|.|..+++|+++....
T Consensus 27 D~l~L~~~er~Ks-RlR~~Td~G~eigI~L~Rg~~L~dGDVL~~Dd 71 (231)
T PRK13262 27 DLLILDQREAQKS-RCRKSSTQGLDLGISLDRNVVLADGDVLAWDE 71 (231)
T ss_pred eEEEeCHHHhhcc-eeeEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 3477888888775 45677789999999999999999999997653
No 80
>KOG0712|consensus
Probab=34.16 E-value=1e+02 Score=27.30 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.9
Q ss_pred CCcEEEEeccCHHHHhcCcEEEE
Q psy4965 24 GINLVTTETITLTEALCGFTKVI 46 (179)
Q Consensus 24 g~DL~~~~~Isl~eAl~G~~~~i 46 (179)
|.|+...++|+|.+++.|.+..+
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl 122 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKL 122 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccce
Confidence 89999999999999999965443
No 81
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=33.25 E-value=34 Score=25.70 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=31.2
Q ss_pred cCcEEEEeccCCcEEEEEcCCCC--ccCCCcEEEEcCCccCCCCCC--CCCCCeEEEEEEeCC
Q psy4965 40 CGFTKVIKHLDDRQLLITHPPGE--VIKPEDIKGIVGEGMPIYKNP--YEKGTLYIKFDVQFP 98 (179)
Q Consensus 40 ~G~~~~i~~ldGr~i~i~ip~G~--vi~~g~~~~i~geGmP~~~~~--~~~GdL~I~f~V~fP 98 (179)
-|..+.|.+.||+.+.-+||+|= +++.|+.+. .|-|...+| +.+|-.=..+-..-|
T Consensus 22 gg~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~---~dqpLT~nPNVGGFGQ~e~EIVLQ~p 81 (118)
T PF01333_consen 22 GGYEVTIETSDGETVVETIPAGPELIVSEGQSVK---ADQPLTNNPNVGGFGQGETEIVLQNP 81 (118)
T ss_dssp SEEEEEEETTTSEEEEEEEESSS-BS--TT-EET---TT-BSB------EEEEEEEEEEE--S
T ss_pred CCEEEEEECCCCCEEEEecCCCCeEEEcCCCEEe---cCCcccCCCCcCccCcCceEEEeecc
Confidence 34678899999999999999983 345565543 244555444 345555555555544
No 82
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=32.99 E-value=1.3e+02 Score=18.83 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=24.6
Q ss_pred CcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCC
Q psy4965 41 GFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGE 75 (179)
Q Consensus 41 G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~ge 75 (179)
+-...|-|.||..++|+.+++ .+-|+.+.+.-.
T Consensus 5 ~~~aiVlT~dGeF~~ik~~~~--~~vG~eI~~~~~ 37 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKIKRKPG--MEVGQEIEFDEK 37 (56)
T ss_pred CCEEEEEcCCCcEEEEeCCCC--CcccCEEEEech
Confidence 345667788888888888777 777887777654
No 83
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=32.50 E-value=18 Score=30.10 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=22.1
Q ss_pred EEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965 43 TKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 82 (179)
Q Consensus 43 ~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~ 82 (179)
++.|+.+|||.+++....|- +.-=+++.-.+.|||+..+
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~-lnrldrltaanygmpintn 200 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGM-LNRLDRLTAANYGMPINTN 200 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TT-T--GGGTGGGGTT--SSS-
T ss_pred ceeeeCCCCcEEEEEeccch-hhHHHHHhhhhcCCccchh
Confidence 46778889998888766662 3333456667899998653
No 84
>KOG0715|consensus
Probab=32.34 E-value=77 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=28.4
Q ss_pred EEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeC
Q psy4965 53 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQF 97 (179)
Q Consensus 53 ~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~f 97 (179)
.+.|.+|+| +..+.++++.+.|- .+|+|.+.|..
T Consensus 234 ~i~i~~~~g--~~~~~~l~~~~~~~---------~~l~v~~~v~~ 267 (288)
T KOG0715|consen 234 DIMIVLPAG--VRSADTLRFAGHGN---------DDLFVRLIVAK 267 (288)
T ss_pred eEEeecCcc--cccccEEEEecCCc---------ceEEEEEEecc
Confidence 588899999 99999999998642 29999999873
No 85
>KOG0315|consensus
Probab=30.76 E-value=32 Score=29.58 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEeccCHHHHhcC-cEEEEeccCCcE
Q psy4965 29 TTETITLTEALCG-FTKVIKHLDDRQ 53 (179)
Q Consensus 29 ~~~~Isl~eAl~G-~~~~i~~ldGr~ 53 (179)
|..+|-|++|++| +..+|.|.|+..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqV 43 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQV 43 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccce
Confidence 3578999999999 678999998753
No 86
>COG2371 UreE Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones]
Probab=26.65 E-value=1.8e+02 Score=22.82 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=32.8
Q ss_pred EeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 30 TETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 30 ~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
.+.++..|+-. -...+.+-+|+.+-|..|.|.+..+|+++..++
T Consensus 23 ~v~L~~~er~k-~r~R~~t~~G~ev~l~L~~~~~L~~GD~L~~~d 66 (155)
T COG2371 23 KVVLTWDERHK-RRLRKTTDDGREVGLRLPRGVLLRDGDVLLAED 66 (155)
T ss_pred EEeccHHHhhh-eEEEEeCCCCcEEEEEcCCCccccCCCEEEeCC
Confidence 34455555443 234577889999999999998899999998764
No 87
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=26.06 E-value=1.2e+02 Score=22.29 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=28.2
Q ss_pred EEcCCCCccCCCcEEEEcCCccCCCCC-----CCCCCCeEEEEEEeCCCC
Q psy4965 56 ITHPPGEVIKPEDIKGIVGEGMPIYKN-----PYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 56 i~ip~G~vi~~g~~~~i~geGmP~~~~-----~~~~GdL~I~f~V~fP~~ 100 (179)
..+|.+ +++|+.+.|.|.=.+..++ ....+|+.++|++.|++.
T Consensus 3 ~~lp~~--l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~~~ 50 (128)
T smart00276 3 LPIPGG--LKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFNEN 50 (128)
T ss_pred ccCCCC--CCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCCCC
Confidence 346666 8899999888653222111 012379999999999864
No 88
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=22.54 E-value=1.6e+02 Score=20.92 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=18.4
Q ss_pred eEEEEEEeCCCCCCCCHHHHHHHHH
Q psy4965 89 LYIKFDVQFPESYFNNDAKLKELEA 113 (179)
Q Consensus 89 L~I~f~V~fP~~~~l~~~~~~~l~~ 113 (179)
.+|++.|.+|.. +++++.+.++.
T Consensus 3 flv~m~v~~P~~--~~~~~~~~~~a 25 (91)
T PF02426_consen 3 FLVRMTVNVPPD--MPPEEVDRLKA 25 (91)
T ss_pred EEEEEEeeCCCC--CCHHHHHHHHH
Confidence 468999999999 99887666543
No 89
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=21.55 E-value=3.4e+02 Score=20.67 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=8.4
Q ss_pred ccEEEEEEEecCC
Q psy4965 6 GDVIIVLEQKPHD 18 (179)
Q Consensus 6 GDliv~i~~k~h~ 18 (179)
-|.|++|.+....
T Consensus 58 sDPYv~V~l~~~~ 70 (158)
T cd04015 58 SDPYATVDLAGAR 70 (158)
T ss_pred cCeEEEEEECCeE
Confidence 4778887765433
No 90
>PRK14711 ureE urease accessory protein UreE; Provisional
Probab=21.27 E-value=3.4e+02 Score=22.00 Aligned_cols=43 Identities=14% Similarity=-0.069 Sum_probs=34.3
Q ss_pred EeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEc
Q psy4965 30 TETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV 73 (179)
Q Consensus 30 ~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~ 73 (179)
.+.++..++... ...+.|-+|+.+-|..|.+..+++|+++...
T Consensus 27 ~l~L~~~er~Kr-RlR~~Td~G~eigI~L~r~~~L~dGDVL~~~ 69 (191)
T PRK14711 27 WLVLDQWEAQKS-RLRKATSGDVELALSLDRNTHLHDGDILLWN 69 (191)
T ss_pred EEEeCHHHhhhe-EEEEEcCCCeEEEEECCCCCcCCCCCEEEec
Confidence 467777777664 3456778999999999999889999999764
No 91
>PRK10053 hypothetical protein; Provisional
Probab=21.10 E-value=1e+02 Score=23.44 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=23.4
Q ss_pred EEEEeccCCcEEEEEcC----CCCccCCCcEEEEcCC
Q psy4965 43 TKVIKHLDDRQLLITHP----PGEVIKPEDIKGIVGE 75 (179)
Q Consensus 43 ~~~i~~ldGr~i~i~ip----~G~vi~~g~~~~i~ge 75 (179)
.+.++.-.|. |.|.|+ .|..+.|.+.++|.||
T Consensus 78 ~Y~F~D~tG~-I~VeID~~~w~G~~v~p~~kV~I~Ge 113 (130)
T PRK10053 78 RYVFRDKSGE-INVIIPAAVFDGREVQPDQMININGS 113 (130)
T ss_pred eEEEECCCCc-EEEEeCHHHcCCCcCCCCCEEEEEEE
Confidence 3444444555 888887 4677899999999987
No 92
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=20.97 E-value=79 Score=28.65 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=8.2
Q ss_pred CCCCccEEEEEEEe
Q psy4965 2 DQEPGDVIIVLEQK 15 (179)
Q Consensus 2 g~~~GDliv~i~~k 15 (179)
|+.=|||||+....
T Consensus 38 GG~GG~v~~~~~~~ 51 (424)
T PRK12297 38 GGKGGSVIFVADEG 51 (424)
T ss_pred CCCCCEEEEEECCC
Confidence 34557777766543
No 93
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=20.65 E-value=1.4e+02 Score=17.74 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=17.8
Q ss_pred cEEEEeccCHHHHhcCcEEEEeccCCcEEEEE
Q psy4965 26 NLVTTETITLTEALCGFTKVIKHLDDRQLLIT 57 (179)
Q Consensus 26 DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ 57 (179)
.-|....|. ...|.++.|.+.+|+.++|+
T Consensus 11 egfv~g~I~---~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 11 EGFVKGEII---EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp SSEEEEEEE---EEESSEEEEEETTTEEEEEE
T ss_pred ccEEEEEEE---EEcCCEEEEEECCCCEEEeC
Confidence 344444444 45677778888887766654
No 94
>PRK14553 hypothetical protein; Provisional
Probab=20.58 E-value=2.3e+02 Score=20.43 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.2
Q ss_pred ccEEEEEEEecCCCCeeeCCcEEEEe
Q psy4965 6 GDVIIVLEQKPHDRFQRQGINLVTTE 31 (179)
Q Consensus 6 GDliv~i~~k~h~~F~R~g~DL~~~~ 31 (179)
.+.+.-+.++=|..|.-.|.|+++-.
T Consensus 10 ~~~i~~~~i~GHA~~~~~G~DIVCAa 35 (108)
T PRK14553 10 NGQIISFTMSGHAGSGEHGQDIVCAS 35 (108)
T ss_pred CCEEEEEEEEeCCCCCCCCCcEEEhh
Confidence 45677899999999999999998864
No 95
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=20.51 E-value=51 Score=29.46 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=10.9
Q ss_pred CCCCccEEEEEEEecCC
Q psy4965 2 DQEPGDVIIVLEQKPHD 18 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~ 18 (179)
|+.-|||||+....-+.
T Consensus 39 GG~GGsV~~~ad~~l~T 55 (369)
T COG0536 39 GGRGGSVIFEADENLNT 55 (369)
T ss_pred CCCCceEEEEEcCCccc
Confidence 45567888887655443
No 96
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=20.22 E-value=2e+02 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.7
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHH
Q psy4965 90 YIKFDVQFPESYFNNDAKLKELEA 113 (179)
Q Consensus 90 ~I~f~V~fP~~~~l~~~~~~~l~~ 113 (179)
.|.+.|.+|.. ++.++...++.
T Consensus 3 lV~m~V~~P~~--~~~~~~~~i~a 24 (90)
T TIGR03221 3 HVRMDVNLPVD--MPAEKAAAIKA 24 (90)
T ss_pred EEEEEeeCCCC--CCHHHHHHHHH
Confidence 58999999999 98877666543
No 97
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=20.08 E-value=1e+02 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=23.9
Q ss_pred EEEEeccCCcEEEEEcCC----CCccCCCcEEEEcCC
Q psy4965 43 TKVIKHLDDRQLLITHPP----GEVIKPEDIKGIVGE 75 (179)
Q Consensus 43 ~~~i~~ldGr~i~i~ip~----G~vi~~g~~~~i~ge 75 (179)
.+.+..-.|. |.|.|+. |..+.|++.++|.|+
T Consensus 74 ~Y~F~D~TG~-I~VeId~~~w~G~~v~p~d~V~I~Ge 109 (126)
T TIGR00156 74 RYVFRDKSGE-INVVIPAAVWNGREVQPKDMVNISGS 109 (126)
T ss_pred eEEEECCCCC-EEEEECHHHcCCCcCCCCCEEEEEEE
Confidence 3444544565 8888884 667899999999987
Done!