Query psy4965
Match_columns 179
No_of_seqs 213 out of 1494
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q2g_A HSP40 protein, heat sho 100.0 1.4E-34 4.7E-39 230.1 15.2 112 1-116 69-180 (180)
2 3agx_A DNAJ homolog subfamily 100.0 3.4E-34 1.2E-38 228.1 15.4 113 1-117 69-181 (181)
3 1nlt_A Protein YDJ1, mitochond 100.0 3.2E-34 1.1E-38 238.3 11.4 111 1-112 138-248 (248)
4 1xao_A YDJ1, mitochondrial pro 100.0 3.1E-33 1.1E-37 209.5 15.3 120 19-141 1-120 (121)
5 1c3g_A Heat shock protein 40; 100.0 3.4E-33 1.2E-37 220.2 10.6 107 1-111 63-169 (170)
6 3lz8_A Putative chaperone DNAJ 100.0 4.9E-30 1.7E-34 220.9 13.0 107 2-116 209-315 (329)
7 3i38_A Putative chaperone DNAJ 100.0 4.7E-29 1.6E-33 183.7 11.9 95 15-117 2-96 (109)
8 1c3g_A Heat shock protein 40; 99.0 4.6E-10 1.6E-14 87.8 8.0 72 25-100 1-80 (170)
9 2q2g_A HSP40 protein, heat sho 99.0 4.6E-10 1.6E-14 88.6 8.0 76 23-102 2-88 (180)
10 3lz8_A Putative chaperone DNAJ 99.0 4.9E-10 1.7E-14 96.1 6.7 75 22-100 138-225 (329)
11 3agx_A DNAJ homolog subfamily 98.9 2.1E-09 7.3E-14 84.8 8.3 73 24-101 2-87 (181)
12 1nlt_A Protein YDJ1, mitochond 98.8 1.3E-08 4.4E-13 84.0 8.2 77 21-102 8-157 (248)
13 2ctt_A DNAJ homolog subfamily 53.1 0.48 1.6E-05 33.1 -4.1 24 24-47 1-24 (104)
14 3jt0_A Lamin-B1; structural ge 51.3 27 0.00094 25.9 5.2 51 38-91 51-101 (144)
15 2lll_A Lamin-B2; immunoglobuli 42.7 52 0.0018 24.2 5.6 51 38-91 47-98 (139)
16 1gmu_A UREE; metallochaperone; 41.7 63 0.0022 23.6 5.9 46 28-74 15-60 (143)
17 1ifr_A Lamin A/C; immunoglobul 40.2 60 0.002 23.2 5.4 51 38-91 32-83 (121)
18 3hn9_A Lamin-B1; structural ge 38.2 62 0.0021 23.1 5.3 50 38-90 38-87 (123)
19 1ear_A Urease accessory protei 36.8 69 0.0024 23.5 5.5 46 28-74 20-65 (147)
20 1sif_A Ubiquitin; hydrophobic 36.3 33 0.0011 22.4 3.3 25 38-62 6-30 (88)
21 1ufg_A Lamin A, nuclear lamin; 32.1 1E+02 0.0035 22.9 5.8 51 38-91 63-114 (151)
22 3zxf_A Galectin-7; sugar bindi 29.3 1.1E+02 0.0039 21.7 5.5 45 54-100 8-60 (138)
23 3vdz_A Ubiquitin-40S ribosomal 25.5 48 0.0016 22.8 2.8 38 24-61 15-55 (111)
24 3tj8_A Urease accessory protei 24.2 1.3E+02 0.0043 22.7 5.1 45 29-74 21-67 (170)
25 1mli_A Muconolactone isomerase 23.0 99 0.0034 21.3 3.9 23 89-113 3-25 (96)
26 1z6h_A Biotin/lipoyl attachmen 22.3 1.4E+02 0.0047 18.0 5.0 23 48-70 42-64 (72)
No 1
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.4e-34 Score=230.09 Aligned_cols=112 Identities=37% Similarity=0.632 Sum_probs=106.2
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
||+.+|||||+|++++|+.|+|+|+||++++.|||++|+||+++.|+||||+.+.|++|++ +++|++++|+|+|||..
T Consensus 69 ~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~~ 146 (180)
T 2q2g_A 69 PGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPIK 146 (180)
T ss_dssp TTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBCS
T ss_pred CCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCcC
Confidence 5778999999999999999999999999999999999999999999999999899999998 99999999999999987
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS 116 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~ 116 (179)
++++.+|||||+|+|.||++ ||++|+++|+++||
T Consensus 147 ~~~~~~GDL~V~~~V~~P~~--Ls~~q~~~l~~~~p 180 (180)
T 2q2g_A 147 NQPGQKGDLILEFDICFPKS--LTPEQKKLIKEALD 180 (180)
T ss_dssp SSTTCBCCEEEEEEEECCSC--CCHHHHHHHHHHC-
T ss_pred CCCCCcCCEEEEEEEECCCC--CCHHHHHHHHHhcC
Confidence 66567899999999999998 99999999999985
No 2
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=3.4e-34 Score=228.06 Aligned_cols=113 Identities=35% Similarity=0.650 Sum_probs=107.0
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
||+.+|||||+|++++|+.|+|+|+||++++.|||++|++|+++.|+||||+.+.|++|++ +++|++++|+|+|||..
T Consensus 69 ~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~~ 146 (181)
T 3agx_A 69 SNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPLP 146 (181)
T ss_dssp SSSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBCS
T ss_pred CCCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCcC
Confidence 4678999999999999999999999999999999999999999999999999899999988 99999999999999987
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
++++.+|||||+|+|.||++ ||++|+++|+++||.
T Consensus 147 ~~~~~~GDL~V~~~V~~P~~--ls~~q~~~l~~~~~~ 181 (181)
T 3agx_A 147 KTPEKRGDLIIEFEVIFPER--IPQTSRTVLEQVLPI 181 (181)
T ss_dssp SSTTSBCCEEEEEEEECCSC--CCHHHHHHHHHHSCC
T ss_pred CCCCCcCCEEEEEEEECCCC--CCHHHHHHHHHhccC
Confidence 65567899999999999998 999999999999963
No 3
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=3.2e-34 Score=238.25 Aligned_cols=111 Identities=41% Similarity=0.653 Sum_probs=94.0
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
||+.||||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+.+.|++|+|+|+++|++++|+|+|||..
T Consensus 138 ~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~ 217 (248)
T 1nlt_A 138 PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP 217 (248)
T ss_dssp TTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCS
T ss_pred CCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccC
Confidence 46789999999999999999999999999999999999999999999999998999999999999999999999999987
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHH
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~ 112 (179)
+++ .+|||||+|+|.||+++|||++|+++|+
T Consensus 218 ~~~-~~GDL~V~~~V~~P~~~~Ls~~q~~~l~ 248 (248)
T 1nlt_A 218 KYG-GYGNLIIKFTIKDPENHFTSEENLKKLE 248 (248)
T ss_dssp SSC-SBCCEEEEEEEECCC-------------
T ss_pred CCC-CcCCEEEEEEEECCCCCCCCHHHHHhhC
Confidence 654 6899999999999999999999988874
No 4
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=209.53 Aligned_cols=120 Identities=38% Similarity=0.570 Sum_probs=104.5
Q ss_pred CCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCC
Q psy4965 19 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 98 (179)
Q Consensus 19 ~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP 98 (179)
.|+|+|+||++++.|+|.+||||+++.|+||||+.+.|++|+|+|+++|++++|+|+|||..+++ .+|||||+|+|.||
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 49999999999999999999999999999999999999999999999999999999999987764 78999999999999
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeecCc
Q psy4965 99 ESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIA 141 (179)
Q Consensus 99 ~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (179)
+++||+++++++|+++++.+... . ...+.++|+|.+.+|++
T Consensus 80 ~~~~ls~~q~~~l~~l~~~~~~~-~-~~~~~~~ee~~~~~~~~ 120 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPPRIVP-A-IPKKATVDECVLADFDP 120 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCCCCCC-C-CCTTSCEEEEECEECCC
T ss_pred CCCCCCHHHHHHHHHHccccccc-C-CCCCCCceEEEeeccCC
Confidence 99999999999999999876420 0 23357889999999886
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=3.4e-33 Score=220.24 Aligned_cols=107 Identities=32% Similarity=0.606 Sum_probs=101.2
Q ss_pred CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 80 (179)
Q Consensus 1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~ 80 (179)
||+.+|||||+|++++|+.|+|+|+||++++.|||++|+||+++.|+||||+.+.|++|++ +++|++++|+|+|||..
T Consensus 63 ~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~~ 140 (170)
T 1c3g_A 63 QTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTP 140 (170)
T ss_dssp SSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCS
T ss_pred CCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCcC
Confidence 4678999999999999999999999999999999999999999999999999899999998 99999999999999987
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHH
Q psy4965 81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKEL 111 (179)
Q Consensus 81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l 111 (179)
++++.+|||||+|+|.||++ ||++|+++|
T Consensus 141 ~~~~~~GDL~V~~~V~~P~~--Ls~~q~~~l 169 (170)
T 1c3g_A 141 KNPSQRGNLIVKYKVDYPIS--LNDAQKRAI 169 (170)
T ss_dssp SCTTSBCCEEEEECCBCCSS--CCTTHHHHT
T ss_pred CCCCCCCCEEEEEEEECCCC--CCHHHHHhh
Confidence 66567899999999999998 999998776
No 6
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.96 E-value=4.9e-30 Score=220.86 Aligned_cols=107 Identities=23% Similarity=0.372 Sum_probs=101.7
Q ss_pred CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965 2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK 81 (179)
Q Consensus 2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~ 81 (179)
|+.+|||||+|++++|+.|+|+|+||++++.|+|++||||+++.|+||||+ +.|+||+| +++|++++|+|+|||..
T Consensus 209 gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~~rl~G~GmP~~- 284 (329)
T 3lz8_A 209 GGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVSK- 284 (329)
T ss_dssp -CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBCS-
T ss_pred CCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCEEEEcCCCCCCC-
Confidence 467999999999999999999999999999999999999999999999998 79999999 99999999999999976
Q ss_pred CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965 82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS 116 (179)
Q Consensus 82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~ 116 (179)
..+|||||+|+|.||++ |+++|+++|+++..
T Consensus 285 --~~rGDL~v~~~V~~P~~--l~~~q~~~l~~~~~ 315 (329)
T 3lz8_A 285 --THTGDLFAVIKIVMPTK--PDEKARELWQQLAA 315 (329)
T ss_dssp --SCBCCEEEEEEECCCSS--CCHHHHHHHHHHHH
T ss_pred --CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHh
Confidence 36999999999999999 99999999999876
No 7
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.96 E-value=4.7e-29 Score=183.74 Aligned_cols=95 Identities=23% Similarity=0.368 Sum_probs=88.8
Q ss_pred ecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEE
Q psy4965 15 KPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 94 (179)
Q Consensus 15 k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~ 94 (179)
++|+.|+|+|+||++++.|||.+|++|+++.|+||||+ +.|+||+| +++|++++|+|+|||. .+ .+|||||+|+
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g--~~~G~~~rl~G~G~p~-~~--~~GDL~v~~~ 75 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVS-KT--HTGDLFAVIK 75 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBC-SS--CBCCEEEEEE
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCC--cCcCeEEEECCccCCC-CC--CCcCEEEEEE
Confidence 79999999999999999999999999999999999996 99999999 9999999999999998 32 7999999999
Q ss_pred EeCCCCCCCCHHHHHHHHHhcCC
Q psy4965 95 VQFPESYFNNDAKLKELEALLSP 117 (179)
Q Consensus 95 V~fP~~~~l~~~~~~~l~~~l~~ 117 (179)
|.||++ |+++|+++|++++..
T Consensus 76 V~~P~~--Ls~~q~~~l~~l~~~ 96 (109)
T 3i38_A 76 IVMPTK--PDEKARELWQQLAAA 96 (109)
T ss_dssp ECCCSS--CCHHHHHHHHHHHHH
T ss_pred EECCCC--CCHHHHHHHHHHHhh
Confidence 999999 999999999999864
No 8
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.05 E-value=4.6e-10 Score=87.81 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=61.3
Q ss_pred CcEEEEeccCHHHHhcCcEEEEecc----CC----cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEe
Q psy4965 25 INLVTTETITLTEALCGFTKVIKHL----DD----RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ 96 (179)
Q Consensus 25 ~DL~~~~~Isl~eAl~G~~~~i~~l----dG----r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~ 96 (179)
.|+.+++.|||.||+.|+++.|..- .| +.+.|+||+| ++.|+.++++|+|-+...+ +..|||||.|++.
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~ 77 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK 77 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCC--ccCCCEEEEeccccCCCCC-CccccEEEEEEEc
Confidence 3899999999999999999887632 23 7899999999 9999999999999876543 5789999999997
Q ss_pred CCCC
Q psy4965 97 FPES 100 (179)
Q Consensus 97 fP~~ 100 (179)
|..
T Consensus 78 -~h~ 80 (170)
T 1c3g_A 78 -SHP 80 (170)
T ss_dssp -CCS
T ss_pred -cCC
Confidence 554
No 9
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.05 E-value=4.6e-10 Score=88.58 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=62.2
Q ss_pred eCCcEEEEeccCHHHHhcCcEEEEecc-----------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEE
Q psy4965 23 QGINLVTTETITLTEALCGFTKVIKHL-----------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI 91 (179)
Q Consensus 23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I 91 (179)
+|.|+.+++.|||.||+.|+++.|..- ..+.+.|+||+| ++.|+.++++|+|-+...+ +..|||||
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~g~~g-g~~GDl~v 78 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPG--WKDGTKLTYSGEGDQESPG-TSPGDLVL 78 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTT--CCTTCEEEETTCSCCSSTT-SCCCEEEE
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCC--CcCCcEEEEeeccCCCCCC-CccccEEE
Confidence 378999999999999999999877632 246799999999 9999999999999883333 57899999
Q ss_pred EEEEeCCCCCC
Q psy4965 92 KFDVQFPESYF 102 (179)
Q Consensus 92 ~f~V~fP~~~~ 102 (179)
.|++. |...|
T Consensus 79 ~i~~~-~h~~F 88 (180)
T 2q2g_A 79 IIQTK-THPRF 88 (180)
T ss_dssp EEEEC-CCSSC
T ss_pred EEEEE-ecccE
Confidence 99997 65433
No 10
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.99 E-value=4.9e-10 Score=96.14 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=61.8
Q ss_pred eeCCcEEEEeccCHHHHhcCcEEEEecc------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCC
Q psy4965 22 RQGINLVTTETITLTEALCGFTKVIKHL------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT 88 (179)
Q Consensus 22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~Gd 88 (179)
++|.||.+++.|+|.||+.|+++.|..- . .+.+.|+||+| +++|++++++|+|.|...+ +..||
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~G--v~~G~~Irl~G~G~~g~~g-g~~GD 214 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAG--VVDGQRIRLKGQGTPGENG-GPNGD 214 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTT--CCTTCEEEESSCSCCC----CCCCC
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCC--CCCCCEEEEcccccCCCCC-CCCCc
Confidence 5789999999999999999988766521 2 35789999999 9999999999999997643 47899
Q ss_pred eEEEEEEeCCCC
Q psy4965 89 LYIKFDVQFPES 100 (179)
Q Consensus 89 L~I~f~V~fP~~ 100 (179)
|||.|+|. |..
T Consensus 215 L~v~I~v~-~h~ 225 (329)
T 3lz8_A 215 LWLVIHIA-PHP 225 (329)
T ss_dssp EEEEECCC-CCS
T ss_pred EEEEEEEe-cCC
Confidence 99999987 544
No 11
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.95 E-value=2.1e-09 Score=84.81 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCcEEEEeccCHHHHhcCcEEEEec------cCC-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeE
Q psy4965 24 GINLVTTETITLTEALCGFTKVIKH------LDD-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY 90 (179)
Q Consensus 24 g~DL~~~~~Isl~eAl~G~~~~i~~------ldG-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~ 90 (179)
+.|+.+++.|||.||+.|+++.|.. -.| +.+.|+||+| ++.|+.++++|+|-+..+ +..||||
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~G~G~~~~~--g~~GDl~ 77 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG--WKEGTKITFPKEGDQTSN--NIPADIV 77 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCSS--SCCCCEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCC--ccCCcEEEEeeccccCCC--CCcccEE
Confidence 5689999999999999999877652 234 6799999999 999999999999998764 4789999
Q ss_pred EEEEEeCCCCC
Q psy4965 91 IKFDVQFPESY 101 (179)
Q Consensus 91 I~f~V~fP~~~ 101 (179)
|.|++. |...
T Consensus 78 v~i~~~-~h~~ 87 (181)
T 3agx_A 78 FVLKDK-PHNI 87 (181)
T ss_dssp EEEEEC-CCSS
T ss_pred EEEEEe-cccc
Confidence 999997 5543
No 12
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.79 E-value=1.3e-08 Score=84.01 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=63.5
Q ss_pred eeeCCcEEEEeccCHHHHhcCcEEEEecc---------------------------------------------------
Q psy4965 21 QRQGINLVTTETITLTEALCGFTKVIKHL--------------------------------------------------- 49 (179)
Q Consensus 21 ~R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------------------------------------------------- 49 (179)
.++|.|+.+++.|||.||+.|.++.|..-
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~ 87 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH 87 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCC
Confidence 35799999999999999999988766411
Q ss_pred ----------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCC
Q psy4965 50 ----------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF 102 (179)
Q Consensus 50 ----------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~ 102 (179)
..+.|.|+||+| ++.|+.++++|+|-+..+ +..|||||.|+|. |...|
T Consensus 88 G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~~--g~~GDl~v~i~v~-~h~~F 157 (248)
T 1nlt_A 88 GTGDIIDPKDRCKSCNGKKVENERKILEVHVEPG--MKDGQRIVFKGEADQAPD--VIPGDVVFIVSER-PHKSF 157 (248)
T ss_dssp SSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCTT--CBCCCEEEEEEEC-CCSSC
T ss_pred CcCEEeccCCCCcccCCCceEeeeEEEEEEECCC--ccCCCEEEEeeeecCCCC--CCcceEEEEEEEe-cCccc
Confidence 015789999999 999999999999998654 4789999999987 65533
No 13
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.15 E-value=0.48 Score=33.13 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.7
Q ss_pred CCcEEEEeccCHHHHhcCcEEEEe
Q psy4965 24 GINLVTTETITLTEALCGFTKVIK 47 (179)
Q Consensus 24 g~DL~~~~~Isl~eAl~G~~~~i~ 47 (179)
|.|+.+.+.|+|.||+.|.++.|.
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~ 24 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFT 24 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCC
T ss_pred CCceEEEEEEEHHHHcCCCEEEEE
Confidence 568889999999999999887664
No 14
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=51.33 E-value=27 Score=25.87 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=35.1
Q ss_pred HhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEE
Q psy4965 38 ALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI 91 (179)
Q Consensus 38 Al~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I 91 (179)
.|-|+++. ...+|+.+..+.|++-+++||..+.|-..|.-.... ...||+-
T Consensus 51 ~LgGW~L~-r~v~g~~~~y~FP~~~~L~pg~~VtVwa~g~g~~~~--pp~dlv~ 101 (144)
T 3jt0_A 51 PMGGWEMI-RKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTAS--PPTDLIW 101 (144)
T ss_dssp ECTTCEEE-EEETTEEEEEECCTTCEECTTCEEEEEETTSCCCCB--TTTEEEE
T ss_pred ecCCcEEE-EEeCCCceEEEcCCCcEECCCCEEEEEECCCCCCCC--CChhhee
Confidence 44555544 445777777999999999999999998877532222 3456653
No 15
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=42.72 E-value=52 Score=24.16 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=35.2
Q ss_pred HhcCcEEEEeccCCc-EEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEE
Q psy4965 38 ALCGFTKVIKHLDDR-QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI 91 (179)
Q Consensus 38 Al~G~~~~i~~ldGr-~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I 91 (179)
.|-|+++.= ..+|+ .+..+.|++-+++||..++|-..|.-.... ...||+-
T Consensus 47 ~L~GW~L~r-~v~g~~~~~y~Fp~~~~L~pg~~VtIws~~~g~~~~--pp~dlv~ 98 (139)
T 2lll_A 47 SLGNWRIKR-QVLEGEEIAYKFTPKYILRAGQMVTVWAAGAGVAHS--PPSTLVW 98 (139)
T ss_dssp ECSSCEEEE-EETTSCEEEEECCTTCEECTTCEEEEEEGGGTCCCB--TTTEEEE
T ss_pred ccCCCEEEE-ecCCCccEEEEECCCcEECCCCEEEEEeCCCCCCCC--CchhEEE
Confidence 455666443 34554 488999999999999999999887633332 3466654
No 16
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=41.69 E-value=63 Score=23.64 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=37.7
Q ss_pred EEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 28 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 28 ~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
.-++.++..++... ...+.+-+|+.+-|..|.|.++++|+++....
T Consensus 15 ~~~v~L~~~~r~k~-R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~dd 60 (143)
T 1gmu_A 15 TASVTLPIDVRVKS-RVKVTLNDGRDAGLLLPRGLLLRGGDVLSNEE 60 (143)
T ss_dssp SEEEEECHHHHTCS-EEEEECTTSCEEEEECCSSCCCCTTCEEECTT
T ss_pred ceEEEeCHHHHhcc-eEEEECCCCCEEEEECCCCcccCCCCEEEECC
Confidence 34578888888543 66788899999999999999999999997653
No 17
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=40.18 E-value=60 Score=23.17 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=35.1
Q ss_pred HhcCcEEEEeccCCc-EEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEE
Q psy4965 38 ALCGFTKVIKHLDDR-QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI 91 (179)
Q Consensus 38 Al~G~~~~i~~ldGr-~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I 91 (179)
.|.|+++.=. .+|+ .+..+.|++-+++||..++|-..|.-..+. ...||+-
T Consensus 32 ~L~gW~l~r~-v~~~~~~~y~Fp~~~~L~pg~~vtIws~~~g~~~~--pp~dlv~ 83 (121)
T 1ifr_A 32 SMGNWQIKRQ-NGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHS--PPTDLVW 83 (121)
T ss_dssp ECTTCEEEEE-ETTSCCEEEECCSSCEECTTCEEEEEETTSSCCCB--TTTEEEE
T ss_pred ccCCCEEEEE-cCCCccEEEEeCCCcEECCCCEEEEEeCCCCCCCC--CchhEEE
Confidence 5566665433 4554 488999999999999999999887533332 2356654
No 18
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=38.20 E-value=62 Score=23.11 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=33.8
Q ss_pred HhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeE
Q psy4965 38 ALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY 90 (179)
Q Consensus 38 Al~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~ 90 (179)
.|.|+++. ...+|.....+.|++-+++||..+.|-..|.-..+. ...||+
T Consensus 38 ~L~gW~l~-r~v~~~~~~y~Fp~~~~L~pg~~vtVwa~g~g~~~~--pp~dlv 87 (123)
T 3hn9_A 38 PMGGWEMI-RKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTAS--PPTDLI 87 (123)
T ss_dssp ECTTCEEE-EEETTEEEEEECCTTCEECTTCEEEEEETTSSCCCB--TTTEEE
T ss_pred ecCCcEEE-EEeCCCceEEEcCCCcEECCCCEEEEEECCCCCcCC--Cchhhe
Confidence 45566654 335676566899999999999999998877632222 235554
No 19
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=36.84 E-value=69 Score=23.50 Aligned_cols=46 Identities=7% Similarity=-0.070 Sum_probs=37.8
Q ss_pred EEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcC
Q psy4965 28 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 74 (179)
Q Consensus 28 ~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~g 74 (179)
.-++.++..++... ...+.+-+|+.+-|..|.|..+++|+++....
T Consensus 20 ~d~v~L~~~~r~k~-R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~dd 65 (147)
T 1ear_A 20 VDWLEVEWEDLNKR-ILRKETENGTDIAIKLENSGTLRYGDVLYESD 65 (147)
T ss_dssp EEEEEECGGGGGCS-EEEEECTTCCEEEEECSSCCCCCTTEEEEECS
T ss_pred ceEEEeCHHHHhcc-eeEEECCCCCEEEEECCCCcccCCCCEEEECC
Confidence 34577888877554 66788899999999999999999999998763
No 20
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=36.27 E-value=33 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.6
Q ss_pred HhcCcEEEEeccCCcEEEEEcCCCC
Q psy4965 38 ALCGFTKVIKHLDDRQLLITHPPGE 62 (179)
Q Consensus 38 Al~G~~~~i~~ldGr~i~i~ip~G~ 62 (179)
.|.|..+.|.+++|+.+.+.+++..
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v~~~~ 30 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEMEPSD 30 (88)
T ss_dssp ----CEEEEEETTSCEEEEECCTTS
T ss_pred cccceEEEEEeCCCCEEEEEECCCC
Confidence 3678899999999998888887663
No 21
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=32.14 E-value=1e+02 Score=22.87 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=35.0
Q ss_pred HhcCcEEEEeccCCc-EEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEE
Q psy4965 38 ALCGFTKVIKHLDDR-QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI 91 (179)
Q Consensus 38 Al~G~~~~i~~ldGr-~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I 91 (179)
.|-|+++.= ..||. .+..+.|++-+++||..++|-..|.-..+. ...||+-
T Consensus 63 ~L~GW~L~r-~vdg~~~~~y~Fp~~~~L~pg~tVtIws~~~g~~~~--pp~dlv~ 114 (151)
T 1ufg_A 63 SMGNWQIRR-QNGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHS--PPTDLVW 114 (151)
T ss_dssp ECSSCEEEE-EETTSCCEEEECCTTCEECTTCEEEEEESSSSCCCC--TTTEEEE
T ss_pred ccCCCEEEE-ecCCCccEEEEECCCcEECCCCEEEEEeCCCCCCCC--CchhEEE
Confidence 555666543 24554 488999999999999999999887533332 3467764
No 22
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=29.30 E-value=1.1e+02 Score=21.74 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=30.3
Q ss_pred EEEEcCCCCccCCCcEEEEcCCccCCCCC--------CCCCCCeEEEEEEeCCCC
Q psy4965 54 LLITHPPGEVIKPEDIKGIVGEGMPIYKN--------PYEKGTLYIKFDVQFPES 100 (179)
Q Consensus 54 i~i~ip~G~vi~~g~~~~i~geGmP~~~~--------~~~~GdL~I~f~V~fP~~ 100 (179)
..-.+|.| +++|+.+.|.|.=.+..++ .....|+-++|++.|.+.
T Consensus 8 ~~~~i~~g--l~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~~ 60 (138)
T 3zxf_A 8 HKSSLPEG--IRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTS 60 (138)
T ss_dssp EEEECTTC--CCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTTT
T ss_pred EEeecCCC--CCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCCC
Confidence 34567777 8999999998753222211 113569999999999764
No 23
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=25.52 E-value=48 Score=22.76 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCcEEEEeccC---HHHHhcCcEEEEeccCCcEEEEEcCCC
Q psy4965 24 GINLVTTETIT---LTEALCGFTKVIKHLDDRQLLITHPPG 61 (179)
Q Consensus 24 g~DL~~~~~Is---l~eAl~G~~~~i~~ldGr~i~i~ip~G 61 (179)
+.++++....+ ..+.....++.|++++|+.+.|.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~G~~~~l~v~~~ 55 (111)
T 3vdz_A 15 GDELYIDTDNDGSIDGDELLAMQIFVKTLTGKTITLEVEPS 55 (111)
T ss_dssp GGGEEECTTCSSCCCTGGGGCEEEEEECSSSCEEEEEECTT
T ss_pred CceeccccccccccCcCCCccEEEEEEeCCCCEEEEEeCCC
Confidence 45555554443 223333455666666666666655544
No 24
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A {Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A 3nxz_A 3ny0_A
Probab=24.17 E-value=1.3e+02 Score=22.72 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=35.3
Q ss_pred EEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCc--cCCCcEEEEcC
Q psy4965 29 TTETITLTEALCGFTKVIKHLDDRQLLITHPPGEV--IKPEDIKGIVG 74 (179)
Q Consensus 29 ~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~v--i~~g~~~~i~g 74 (179)
-++.++..++... ...+.+-+|+.+-|..|.|.+ +++|+++....
T Consensus 21 d~v~L~~~~r~kr-R~r~~t~~G~ev~l~L~r~~~~~L~dGDvL~~dd 67 (170)
T 3tj8_A 21 DYVDLEWFETRKK-IARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEE 67 (170)
T ss_dssp EEEEECGGGTTCS-EEEEECTTCCEEEEECSSCCTTCCCTTEEEEEET
T ss_pred eEEEECHHHhhcc-eEEEECCCCCEEEEECCCCCcCCcCCCCEEEECC
Confidence 3566777766664 456778899999999999876 89999998863
No 25
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=23.00 E-value=99 Score=21.35 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.0
Q ss_pred eEEEEEEeCCCCCCCCHHHHHHHHH
Q psy4965 89 LYIKFDVQFPESYFNNDAKLKELEA 113 (179)
Q Consensus 89 L~I~f~V~fP~~~~l~~~~~~~l~~ 113 (179)
..|++.|.+|.. ++.++...|+.
T Consensus 3 FlV~m~V~~P~~--~~~~~~~~~~a 25 (96)
T 1mli_A 3 FHVKMTVKLPVD--MDPAKATQLKA 25 (96)
T ss_pred EEEEEEeeCCCC--CCHHHHHHHHH
Confidence 358999999999 99887665543
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=22.32 E-value=1.4e+02 Score=18.02 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=14.8
Q ss_pred ccCCcEEEEEcCCCCccCCCcEE
Q psy4965 48 HLDDRQLLITHPPGEVIKPEDIK 70 (179)
Q Consensus 48 ~ldGr~i~i~ip~G~vi~~g~~~ 70 (179)
..+|....+.+..|+.+.+|+.+
T Consensus 42 p~~G~v~~~~v~~G~~V~~G~~l 64 (72)
T 1z6h_A 42 DRSGIVKEVKKKEGDFVNEGDVL 64 (72)
T ss_dssp SSCEEEEEESSCTTCEECTTCEE
T ss_pred CCCcEEEEEecCCCCEECCCCEE
Confidence 45677555666677767666654
Done!