RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4965
(179 letters)
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 149 bits (378), Expect = 1e-43
Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 7/179 (3%)
Query: 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
P++ PG+V+ +L +KPHD F+R+G +L T+ I+L EAL GF I HLD R+LL+ PP
Sbjct: 250 PNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPP 309
Query: 61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
GEV+KP DIK I EGMP YK+P++KG LY+ F+V FP + + + L++L P
Sbjct: 310 GEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPE 369
Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
+E +E V + E + Y DEDD H EG+ V C Q
Sbjct: 370 EKKDLEDTE-IEVVTAQNVDPEEVKD---RDQKQQYQEDEDD---EHHQEGERVACRQQ 421
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 107 bits (271), Expect = 2e-30
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
PGD+ +V+ KPH F+R G +L I+LTEAL G + ++ + PP
Sbjct: 62 NGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPT-LGGKVKLKIPP 120
Query: 61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100
G +P + + G+GMP +G LY++ V+FP+
Sbjct: 121 GT--QPGTVLRLKGKGMPRL-RGGGRGDLYVEVKVEFPKK 157
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 87.2 bits (217), Expect = 4e-23
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 26 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYE 85
+L T I+L EAL G T + LD R++ I P G +P D I G+GMPI K
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAG--TQPGDKLRIKGKGMPINKGGNG 58
Query: 86 KGTLYIKFDVQFPESYFNNDAKL 108
+G L + +V+ P+ + +L
Sbjct: 59 RGDLIVTLNVKIPKKLSSEQKEL 81
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 81.5 bits (202), Expect = 1e-18
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
GD+ + + KPH F+R G +L I+ TEA G + LD R + + P
Sbjct: 240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPA 298
Query: 61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
G + ++ + G+GMP ++ +G LY++ V+ P++ +D + + LE
Sbjct: 299 GT--QTGEVFRLRGKGMPKLRSGG-RGDLYVRVKVETPKNL--SDEQKELLEEFAKSLGE 353
Query: 121 VDMPPPH 127
P
Sbjct: 354 GPEQSPG 360
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 63.4 bits (155), Expect = 2e-12
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 4 EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD-DRQLLITHPPGE 62
GD+ +V+ KPH F+R G +L I+ T+A+ G + LD D +L I P G
Sbjct: 246 PNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKI--PAG- 302
Query: 63 VIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118
+ + + G+G+P +G L + V+ P++ + + + LE L
Sbjct: 303 -TQSGTVFRLKGKGVP-RLRGNGRGDLLVTVKVETPKNL--SKEQKELLEELAEAS 354
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 53.6 bits (129), Expect = 7e-09
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
PGD+ I+++ KPH F+R+G NL IT+ EA+ G + LD ++ + PPG
Sbjct: 255 PGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--T 312
Query: 65 KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE----SYFNNDAK-----LKELEALL 115
K D + G+GMP K G L ++ + P+ S D K LKEL+ LL
Sbjct: 313 KEGDKIRVPGKGMPRLKGS-GYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371
Query: 116 SPRPS 120
P P
Sbjct: 372 -PEPE 375
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 49.4 bits (118), Expect = 2e-07
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKV-IKHLDDRQLLITHPPGEV 63
PGD+I+V+E+KPH+ F R G +++ ++ + + G TKV + LD L T P G
Sbjct: 266 PGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLG-TKVEVPTLDGAVKL-TIPAG-- 321
Query: 64 IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAK-LKELEALLSPRPSVD 122
+PE + I G+G+ + +G Y++ +V P+ + D + LKEL + S
Sbjct: 322 TQPETMLRIPGKGIGHLRGS-GRGDQYVRVNVFVPKEVSHQDKELLKEL------KKSSH 374
Query: 123 MPPPHSEHVEE 133
+ P EE
Sbjct: 375 ISPNAHNDKEE 385
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 46.5 bits (110), Expect = 2e-06
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 PD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 59
PD Q+ GD+ I + KPH F+R G +L T I+ T+A G I+ + +++ I P
Sbjct: 241 PDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIP 300
Query: 60 PGEVIKPEDIKGIVGEGMPIYKNPYEK-GTLYIKFDVQFPESYFNNDAKLKE 110
G + ++ I EGMPI EK G L + ++ P++ +N KL E
Sbjct: 301 KG--TENDEQIIIKNEGMPILHT--EKFGNLILIIKIKTPKNLNSNAIKLLE 348
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 46.3 bits (110), Expect = 2e-06
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 65
GD+ +++ +P RF+R G +L+ TI +A+ G T + + ++ PPG +
Sbjct: 257 GDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQ 314
Query: 66 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAK-LKEL 111
PE + + G+G+P + +G L + V+ P+ + K LKEL
Sbjct: 315 PETVFRLKGKGLPNMRYG-RRGDLIVNVHVEIPKRLSREERKLLKEL 360
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 44.7 bits (106), Expect = 8e-06
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
GD+ + + ++PHD F R G +L T ++ + +A G T ++ + D IT PPG
Sbjct: 243 AGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--T 300
Query: 65 KPEDIKGIVGEGMP 78
+P + + G GMP
Sbjct: 301 QPGSVITLRGRGMP 314
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 43.8 bits (104), Expect = 1e-05
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
PGD+ + L K F+R GIN+++ I+ +A+ G T + +D L T P G
Sbjct: 247 PGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVEL-TIPAG--T 303
Query: 65 KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 98
+P + + +G+P NP +G I V+ P
Sbjct: 304 QPNTVLTLENKGVPRLGNPVARGDHLITVKVKIP 337
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 42.8 bits (101), Expect = 3e-05
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
PGD+ + L +PH+ F+R G ++ I+ +A G + L+ + L P
Sbjct: 240 RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGEREL-KIPK 298
Query: 61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 98
G +P DI G+G+P + +G I+ +V+ P
Sbjct: 299 G--TQPGDIFRFKGKGIPSLRG-GGRGDQIIEVEVKVP 333
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 42.8 bits (101), Expect = 3e-05
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDR-QLLITH--PPG 61
PGD+ +V+ + FQRQG +LV T+ I+ +A G + LDD L I G
Sbjct: 244 PGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSG 303
Query: 62 EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAK-LKELEALLSPRP 119
EV + + G+G+P Y +KG L ++ V P + L+E EAL +P
Sbjct: 304 EVFR------LRGKGLP-YLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEALEEEKP 355
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 42.5 bits (100), Expect = 4e-05
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 4 EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEV 63
EPGD+ +V++ KPH F+R+G NL + I+ +A G T + + D + + P G
Sbjct: 249 EPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTI-DGPVELKIPAG-- 305
Query: 64 IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKEL 111
+ + G GMP + KG LY+K V P+ K KEL
Sbjct: 306 TQSGTTFRLKGHGMPSLRWS-GKGNLYVKVKVVVPKKL---SPKQKEL 349
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 41.5 bits (97), Expect = 9e-05
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 65
GD+ +V K H+ F+RQG +L+ I+L +A+ G + +D ++ + P G +
Sbjct: 251 GDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TE 308
Query: 66 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKE 110
+ + G GMP Y Y KG ++ ++ P+ +L E
Sbjct: 309 SGQVFRLKGHGMP-YLGAYGKGDQHVIVKIEIPKKITRRQRELIE 352
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 41.3 bits (97), Expect = 9e-05
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 65
GD+ IV++ KPH F+R+G N+ IT T+A G I LD + + T P G +
Sbjct: 260 GDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQ 316
Query: 66 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
+ G+G+P + +G +K ++ P+
Sbjct: 317 TGTKFRLRGKGIP-HLRGRGRGDQIVKVYIEVPK 349
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 38.3 bits (89), Expect = 0.001
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP---PG 61
GD+++V+E++PH R +L+ +++ A G + +D + + PG
Sbjct: 258 NGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG 317
Query: 62 EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100
+V++ + +G+P N Y G L + V PE+
Sbjct: 318 KVLR------LRNKGLPSV-NGYGTGDLLVNVSVYIPET 349
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 37.5 bits (87), Expect = 0.002
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL-DDRQLLITHPPGEV 63
GD+ + ++ +PH F+R+G +L+ I +A G K I L + +T P G
Sbjct: 258 AGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG-- 315
Query: 64 IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
I+ I + G+G P +G L ++ V+ P+
Sbjct: 316 IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQ 350
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 37.5 bits (87), Expect = 0.002
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 41
P GD+ IVL K HD F+R G ++++ I+ T+A G
Sbjct: 241 PGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALG 281
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 36.0 bits (83), Expect = 0.006
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 65
GD+ + +E +PH +R+ +L+ I +A G + LD Q +I PG +
Sbjct: 243 GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQ 299
Query: 66 PEDIKGIVGEGMP 78
D+ + G+GMP
Sbjct: 300 HGDLHRLRGQGMP 312
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 35.2 bits (81), Expect = 0.012
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG 61
GD+ +V+ PH F R G NL T +T EA G + L + + PPG
Sbjct: 267 GDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG 322
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 33.8 bits (77), Expect = 0.031
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLIT---HPPGE 62
GD+ +VL QR +L + I +A G IK ++ L PGE
Sbjct: 251 GDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGE 310
Query: 63 VIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKEL 111
V+K I G GMP + N + G L ++ +V+ P+ +K KEL
Sbjct: 311 VLK------IKGAGMP-HLNGHGSGDLLVRINVEVPKRL---TSKQKEL 349
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
domain. This is part of the ubiquitin-mediated protein
degradation pathway in which a thiol-ester linkage forms
between a conserved cysteine and the C-terminus of
ubiquitin and complexes with ubiquitin protein ligase
enzymes, E3. This pathway regulates many fundamental
cellular processes. There are also other E2s which form
thiol-ester linkages without the use of E3s as well as
several UBC homologs (TSG101, Mms2, Croc-1 and similar
proteins) which lack the active site cysteine essential
for ubiquitination and appear to function in DNA repair
pathways which were omitted from the scope of this CD.
Length = 141
Score = 31.0 bits (71), Expect = 0.14
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 50 DDRQLLITHPPGEVIKP--EDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESY 101
+ + L P G +P E++ G PYE G K D++FPE Y
Sbjct: 7 ELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGG--IFKLDIEFPEDY 58
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 31.7 bits (73), Expect = 0.19
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEA 38
GD+ + + K H F+R G +L I+ T A
Sbjct: 242 AGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTA 275
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 30.4 bits (69), Expect = 0.44
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 80 YKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
YK+P + + +F V+ PE Y+ L EL + S P
Sbjct: 115 YKDPISSFSEFQRFSVENPEVYW--SIVLDELSLVFSVPPR 153
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 29.8 bits (67), Expect = 0.78
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
GD+ I + PH F+R+G ++ + I+ +A G + +D ++ P G
Sbjct: 252 TGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDG-EVKYEVPAG--T 308
Query: 65 KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100
+P + + G+G+P N +G Y+ V P+
Sbjct: 309 QPGTVFRLKGKGVP-RVNSTGRGNQYVTVIVDIPKK 343
>gnl|CDD|216378 pfam01231, IDO, Indoleamine 2,3-dioxygenase.
Length = 397
Score = 29.1 bits (66), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 123 MPPPHS---EHVEEV-ELREYIASER 144
MP PH EH+E V +REY+ S +
Sbjct: 295 MPGPHRRFLEHLESVPNIREYVLSHK 320
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 28.8 bits (64), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 41
PGD+ +V KPH+ F+R G ++ +T + G
Sbjct: 242 PGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALG 278
>gnl|CDD|217894 pfam04102, SlyX, SlyX. The SlyX protein has no known function. It
is short less than 80 amino acids and is found close to
the slyD gene. The SlyX protein has a conserved PPH(Y/W)
motif at its C-terminus. The protein may be a
coiled-coil structure.
Length = 68
Score = 26.7 bits (60), Expect = 1.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 107 KLKELEALLSPRPSVDMPPPH 127
+LKE+E+ + + PPPH
Sbjct: 47 RLKEVESSNIASQAEETPPPH 67
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 28.1 bits (63), Expect = 2.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 41
GD+ +V +P +F+R G + T I+ +A G
Sbjct: 251 GDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALG 286
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 27.8 bits (62), Expect = 3.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 41
GD+ +V +PH+ F+R G ++ +T +A G
Sbjct: 247 AGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALG 283
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Proteins destined
for proteasome-mediated degradation may be
ubiquitinated. Ubiquitination follows conjugation of
ubiquitin to a conserved cysteine residue of UBC
homologues. TSG101 is one of several UBC homologues that
lacks this active site cysteine.
Length = 139
Score = 27.2 bits (61), Expect = 3.6
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 83 PYEKGTLYIKFDVQFPESY 101
PYE G K D++FPE Y
Sbjct: 40 PYEGG--VFKLDIEFPEDY 56
>gnl|CDD|215143 PLN02255, PLN02255, H(+) -translocating inorganic pyrophosphatase.
Length = 765
Score = 27.9 bits (62), Expect = 3.7
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 131 VEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCA 177
V V++ + GGGG G Y +E++ + H +CA
Sbjct: 31 VSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDH---NVVAKCA 74
>gnl|CDD|236571 PRK09565, PRK09565, hypothetical protein; Reviewed.
Length = 533
Score = 27.9 bits (62), Expect = 3.7
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 110 ELEALLS--PRPSVDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGH 167
+L A L+ P+ E GG G + H ++ GGH
Sbjct: 251 DLGAFLAGERVPTATPEDAADGGTGGTHDAEEFGEHGHHGGHPGGEDGEHPHGHEDSGGH 310
Query: 168 MHEG 171
G
Sbjct: 311 HGSG 314
>gnl|CDD|223004 PHA03173, PHA03173, UL37 tegument protein; Provisional.
Length = 1028
Score = 27.7 bits (62), Expect = 3.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 106 AKLKELEALLSPRPSVDMPPPHSEHVEEVE--LREYIASERGA 146
KL L ALL P P P + H E +E L E + R A
Sbjct: 642 TKLTALIALLEPFADAAAPVPTTAHAENIEALLGELHSVVRAA 684
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 27.4 bits (61), Expect = 4.0
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDR---QLLITHPPGE 62
GD+ + + +P F R G +L T ++ TE G T + LD ++ G
Sbjct: 274 GDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGR 333
Query: 63 VIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEA 113
+++ + G G+P K G L + V P + + A + LEA
Sbjct: 334 ILR------VRGRGVP--KRSGGAGDLLVTVKVAVPPNL--DGAAAEALEA 374
>gnl|CDD|240607 cd12869, MqsR, Motility quorum-sensing regulator (MqsR). This
family includes domains similar to the motility
quorum-sensing regulator MqsR, a toxin that is highly
upregulated in persisters (dormant cells found in
biofilms that are a source of antibiotic resistance).
MqsR pairs with its antitoxin MqsA, forming a unique
family of toxin:antitoxin (TA) systems. MqsR has been
found to be structurally homologous to the bacterial
ribonuclease (RelE) toxins; however, its sequence is
not similar to any other known toxins and therefore its
molecular function is as yet unknown.
Length = 98
Score = 26.4 bits (59), Expect = 4.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 80 YKNPYEKGTLYIKFDVQ 96
Y PY G LYIKF V
Sbjct: 71 YHAPYPGGELYIKFTVD 87
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain
of the beta subunits of the E1 components of human
pyruvate dehydrogenase complex (E1- PDHc) and related
proteins. Thiamine pyrophosphate (TPP) family,
pyrimidine (PYR) binding domain of the beta subunits of
the E1 components of: human pyruvate dehydrogenase
complex (E1- PDHc), the acetoin dehydrogenase complex
(ADC), and the branched chain alpha-keto acid
dehydrogenase/2-oxoisovalerate dehydrogenase complex
(BCADC), subfamily. The PYR domain is found in many key
metabolic enzymes which use TPP (also known as thiamine
diphosphate) as a cofactor. TPP binds in the cleft
formed by a PYR domain and a PP domain. The PYR domain,
binds the aminopyrimidine ring of TPP, the PP domain
binds the diphosphate residue. A polar interaction
between the conserved glutamate of the PYR domain and
the N1' of the TPP aminopyrimidine ring is shared by
most TPP-dependent enzymes, and participates in the
activation of TPP. The PYR and PP domains have a common
fold, but do not share strong sequence conservation. The
PP domain is not included in this sub-family. E1-PDHc is
an alpha2beta2 dimer-of-heterodimers having two active
sites lying between PYR and PP domains of separate
subunits, the PYR domains are arranged on the beta
subunit, the PP domains on the alpha subunits. PDHc
catalyzes the irreversible oxidative decarboxylation of
pyruvate to produce acetyl-CoA in the bridging step
between glycolysis and the citric acid cycle. ADC
participates in the breakdown of acetoin. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate during the breakdown of branched
chain amino acids.
Length = 167
Score = 26.7 bits (60), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 144 RGAGGGGMGGEAYHSD 159
RG GGG+GG A HS
Sbjct: 109 RGPNGGGIGGGAQHSQ 124
>gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH)
catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme.
Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC
1.1.1.261) plays an important role in the formation of
the enantiomeric configuration of the glycerophosphate
backbone (sn-glycerol-1-phosphate) of archaeal ether
lipids. It catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme. The activity
is zinc-dependent. One characteristic feature of archaea
is that their cellular membrane has an ether linkage
between the glycerol backbone and the hydrocarbon
residues. The polar lipids of the members of Archaea
consist of di- and tetraethers of glycerol with
isoprenoid alcohols bound at the sn-2 and sn-3 positions
of the glycerol moiety. The archaeal polar lipids have
the enantiomeric configuration of a glycerophosphate
backbone [sn- glycerol-1-phosphate (G-1-P)] that is the
mirror image structure of the bacterial or eukaryal
counterpart [sn-glycerol- 3-phosphate (G-3-P)]. The
absolute stereochemistry of the glycerol moiety in all
archaeal polar lipids is opposite to that of glycerol
ester lipids in bacteria and eukarya. This protein
family is only found in Archaea.
Length = 339
Score = 26.9 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 109 KELEALLSPRPSVDMPPPHSEHVEEVELREYIASERGAG-----GGG 150
K++EALL VD+ EEVE E A + GA GGG
Sbjct: 42 KKVEALLEDEGEVDVVIVEDATYEEVEKVESSARDIGADFVIGVGGG 88
>gnl|CDD|184146 PRK13565, PRK13565, anthranilate synthase component I; Provisional.
Length = 490
Score = 26.8 bits (60), Expect = 6.8
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 57 THPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS 116
T P + P DI ++ E + + N K L + D PE+Y +L+EL A L
Sbjct: 138 TAKPDPLGTP-DILLLLSEELAVIDNLSGKLYLIVYADPAQPEAYERAKQRLRELRARL- 195
Query: 117 PRPSVDMPP-PHSEHVEEV 134
R V P S E V
Sbjct: 196 -RQPVAPPVTSASSRTEFV 213
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 26.2 bits (59), Expect = 7.8
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 102 FNNDAKLKELEALLSP 117
F++ K+LEA+L P
Sbjct: 75 FSDPEARKKLEAILHP 90
>gnl|CDD|225453 COG2900, SlyX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 72
Score = 25.1 bits (55), Expect = 9.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 107 KLKELEALLSPRPSVDMPPPH 127
KLK+L+ P+ + PPPH
Sbjct: 51 KLKDLQPSAIASPAEETPPPH 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.138 0.408
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,726,635
Number of extensions: 937494
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 54
Length of query: 179
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 88
Effective length of database: 6,901,388
Effective search space: 607322144
Effective search space used: 607322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.2 bits)