RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4965
         (179 letters)



>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
          mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 81.9 bits (202), Expect = 1e-21
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 20 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79
          F+R G +LV    I L  A+ G    ++H+    L +   PGEVI P   K I G+GMPI
Sbjct: 2  FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 80 YKNPYEKGTLYIKFDVQFPE 99
           K     G L IKF ++ PE
Sbjct: 62 PKYG-GYGNLIIKFTIKDPE 80


>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 90

 Score = 76.5 bits (188), Expect = 1e-19
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 20  FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79
           F+R G +L+ T  ++  E+L GF+K I+ +D R L ++      ++P       G+GMP 
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQ--PVQPSQTSTYPGQGMPT 59

Query: 80  YKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
            KNP ++G L +K+ V +P S   NDA+ + ++
Sbjct: 60  PKNPSQRGNLIVKYKVDYPISL--NDAQKRAID 90


>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein
          import protein mas5 (Hsp40, Ydj1), C-terminal domain
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 74

 Score = 27.8 bits (61), Expect = 0.22
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 1  PDQEPGDVIIVLEQKPH 17
          PD  PGDV+ ++ ++PH
Sbjct: 57 PDVIPGDVVFIVSERPH 73


>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 141

 Score = 27.6 bits (61), Expect = 0.59
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 83  PYEKGTLYIKFDVQFPESY 101
           PY   T  I   +   ++Y
Sbjct: 60  PYRGNTYNIPICLWLLDTY 78


>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 186

 Score = 26.4 bits (57), Expect = 1.9
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 6/38 (15%)

Query: 103 NNDAKLKELEALLSPRP------SVDMPPPHSEHVEEV 134
           +N  K++E+   L            + P   +E +E+V
Sbjct: 8   SNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDV 45


>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 24.9 bits (54), Expect = 2.7
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 2  DQEPGDVIIVLEQKPH 17
                +  V+++K H
Sbjct: 64 TGRRKTLQFVIQEKSH 79


>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
           ITPase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 194

 Score = 25.6 bits (55), Expect = 3.3
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 103 NNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASER 144
            N  KL+E+  +L  +    +     +  E     + I+ ++
Sbjct: 15  GNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQK 56


>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 124

 Score = 24.5 bits (53), Expect = 5.2
 Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 2/35 (5%)

Query: 7   DVIIVLE--QKPHDRFQRQGINLVTTETITLTEAL 39
             +I         +     GI +      ++ E L
Sbjct: 67  KAVIASSPGPNAFEVLNELGIKIYRATGTSVEENL 101


>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 184

 Score = 24.9 bits (53), Expect = 5.6
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 103 NNDAKLKELEALLSPRPSVDMPPPHSEHVEE 133
            N  K+KE   +L     V++      + E 
Sbjct: 7   GNPNKIKEANIILKDLKDVEIEQIKISYPEI 37


>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 116

 Score = 24.1 bits (52), Expect = 7.1
 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 7  DVIIVLE--QKPHDRFQRQGINLVTTETITLTEAL 39
          + +I     +   +  +  G+ +   E  T+ EA+
Sbjct: 64 EYLIASNVGRNAFETLKAAGVKVYRFEGGTVQEAI 98


>d1o13a_ c.55.5.1 (A:) Hypothetical protein TM1816 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 107

 Score = 23.7 bits (51), Expect = 8.1
 Identities = 6/35 (17%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 7   DVIIV--LEQKPHDRFQRQGINLVTTETITLTEAL 39
           +++IV  + ++    F+  G+ ++   + T+ E +
Sbjct: 66  ELVIVRGIGRRAIAAFEAMGVKVIKGASGTVEEVV 100


>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
           [TaxId: 562]}
          Length = 209

 Score = 24.4 bits (52), Expect = 8.6
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 103 NNDAKLKELEALLSPRPSVDMPPPHSEHVEEVE 135
            N  K++EL +LLS    +D+       V+  E
Sbjct: 21  GNVGKVRELASLLSDFG-LDIVAQTDLGVDSAE 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 732,319
Number of extensions: 35390
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 12
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.7 bits)