BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4966
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
+ KI+D T L + GELC+KG + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 405 SAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKD 464
Query: 86 GTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
G FI+ P ELESI QHP + D V GIP GELPAAVVV +
Sbjct: 465 GYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEE 524
Query: 132 NSSVTAEEVKQFV 144
++T +EV +V
Sbjct: 525 GKTMTEQEVMDYV 537
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K+ID T L + GE+C+KG + + GY N EATKE++D++GWLHTGD+ Y +
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 88 HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI+ P ELES+ QHP + D V G+P V GELP AVVV +
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 134 SVTAEEVKQFV 144
++T +EV +V
Sbjct: 494 NMTEKEVMDYV 504
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K+ID T L + GE+C+KG + + GY N EATKE++D++GWLHTGD+ Y +
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 88 HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI+ P ELES+ QHP + D V G+P V GELP AVVV +
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 134 SVTAEEVKQFV 144
++T +EV +V
Sbjct: 494 NMTEKEVMDYV 504
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K+ID T L + GE+C+KG + + GY N EATKE++D++GWLHTGD+ Y +
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 88 HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI+ P ELES+ QHP + D V G+P V GELP AVVV +
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 134 SVTAEEVKQFV 144
++T +EV +V
Sbjct: 494 NMTEKEVMDYV 504
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 15/131 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K++D T L + GELC++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 431
Query: 88 HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI+ +P ELESI QHP++ D V G+P D GELPAAVVV +
Sbjct: 432 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491
Query: 134 SVTAEEVKQFV 144
++T +E+ +V
Sbjct: 492 TMTEKEIVDYV 502
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 15/131 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K++D T L + GELC++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 377 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 436
Query: 88 HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI+ +P ELESI QHP++ D V G+P D GELPAAVVV +
Sbjct: 437 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 496
Query: 134 SVTAEEVKQFV 144
++T +E+ +V
Sbjct: 497 TMTEKEIVDYV 507
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 15/131 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K++D T L + GELC++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 431
Query: 88 HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI+ +P ELESI QHP++ D V G+P D GELPAAVVV +
Sbjct: 432 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491
Query: 134 SVTAEEVKQFV 144
++T +E+ +V
Sbjct: 492 TMTEKEIVDYV 502
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K++D T L + GEL ++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 377 KVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 436
Query: 88 HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI+ +P ELESI QHP++ D V G+P D GELPAAVVV +
Sbjct: 437 FFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 496
Query: 134 SVTAEEVKQFV 144
++T +E+ +V
Sbjct: 497 TMTEKEIVDYV 507
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTG--------- 77
+KI+DP T LP + GE+C++GD + GY N EAT +D +GWLHTG
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425
Query: 78 -----DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
D L F ++P ELE++ HP++ D AV+G+ + GE+P A VV
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK 485
Query: 133 SSVTAEEVKQFV 144
S T +E+KQ++
Sbjct: 486 SQATEDEIKQYI 497
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG--------- 77
+KI+DP T L + GE+C++G + GY N AT E +D DGWLHTG
Sbjct: 413 MKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472
Query: 78 -----DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
D L F ++P ELE++ HPD+ DVAV+ + + GE+P A VV +
Sbjct: 473 ELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD 532
Query: 133 SSVTAEEVKQFVE 145
S ++ ++VKQFV
Sbjct: 533 SELSEDDVKQFVS 545
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 39 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
LP G+ GE+ L+G VF GY N AT+ + GW HTGD+ DG F
Sbjct: 342 LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRFDADGYLFYAGRAPEK 400
Query: 91 ---------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
+ P E+E +QHP + D VIG+P + E AV V KP S+ A+ +
Sbjct: 401 ELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALA 460
Query: 142 QFV 144
+FV
Sbjct: 461 EFV 463
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA----- 80
+ ++ DP T +LP G G + +KG +VF GY E TK DDG+ TGDL
Sbjct: 330 SARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDER 389
Query: 81 ---YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
+ L G +I+ P E+ES P V + AVIG+PH FGE AVVV
Sbjct: 390 GYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDK 449
Query: 132 NSSVTAEEV 140
+++ +V
Sbjct: 450 GATIDEAQV 458
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA------- 80
++ DP T +LP G G + + G +VF GY E T DDG+ TGDL
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 81 -YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
+ L G +I+ P E+ES P V + AVIG+PH FGE AVVV +
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGA 451
Query: 134 SVTAEEV 140
++ +V
Sbjct: 452 TIDEAQV 458
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA------- 80
++ DP T +LP G G + + G +VF GY E T DDG+ TGDL
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 81 -YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN- 132
+ L G +I+ P E+ES P V + AVIG+PH FGE A VV
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREF 451
Query: 133 --SSVTAEEVKQFV 144
S + AEE+ FV
Sbjct: 452 APSEILAEELXAFV 465
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 45 GELCLKGDVFLG-YRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------------- 90
GE+ +K D+ L Y N+ EAT++ D+ GW TGD+ +G +I
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 421
Query: 91 -ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
+ P E+ES+ P V +VAVIG+P + +GE+ AA+VV N V+ +++ ++
Sbjct: 422 NVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEY 474
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 61.2 bits (147), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
F E ++I V + + +G+ GEL + F+GY N+ EAT E L D GW T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPEATAEKLQD-GWYRTSDV 386
Query: 80 AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
A P+GT I I P E+E + P V +V VIG+ +G+ A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
VVP+ +++A+ + F
Sbjct: 447 CVVPRLGETLSADALDTF 464
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
F E ++I V + + +G+ GEL + F+GY N+ +AT E L D GW T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80 AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
A P+GT I I P E+E + P V +V VIG+ +G+ A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
VVP+ +++A+ + F
Sbjct: 447 CVVPRLGETLSADALDTF 464
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
F E ++I V + + +G+ GEL + F+GY N+ +AT E L D GW T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80 AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
A P+GT I I P E+E + P V +V VIG+ +G+ A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
VVP+ +++A+ + F
Sbjct: 447 CVVPRLGETLSADALDTF 464
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
F E ++I V + + +G+ GEL + F+GY N+ +AT E L D GW T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80 AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
A P+GT I I P E+E + P V +V VIG+ +G+ A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
VVP+ +++A+ + F
Sbjct: 447 CVVPRLGETLSADALDTF 464
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 60.1 bits (144), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
F E ++I V + + +G+ GEL + F+GY N+ +AT E L D GW T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80 AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
A P+GT I I P E+E + P V +V VIG+ +G+ A
Sbjct: 387 AVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
VVP+ +++A+ + F
Sbjct: 447 CVVPRLGETLSADALDTF 464
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
F E ++I V + + +G+ GEL + F+GY N+ +AT E L D GW T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80 AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
A P+GT I I P E+E + P V +V VIG+ +G+ A
Sbjct: 387 AVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
VVP+ +++A+ + F
Sbjct: 447 CVVPRLGETLSADALDTF 464
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 12 KQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDD 70
+Q T G+ + IKI+D ++P+G+ G L +G F GY E ++ D+
Sbjct: 356 EQIFTTQGRPISSDDEIKIVDEQYR-EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDE 414
Query: 71 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 116
D + ++GDL R PDG + I+ E+E + HP+V A++ I
Sbjct: 415 DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVD 474
Query: 117 DVFGELPAAVVVPK 130
+ FGE A +V +
Sbjct: 475 EQFGEKSCAFIVSR 488
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 21/138 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKE------------------ML 68
+K+I +L G++GE+ ++G ++F GY + + +E +
Sbjct: 367 LKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426
Query: 69 DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
D++G+LH D + + I+P ELE++ +H V DVAVIG P + GE+P A +V
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIV 486
Query: 129 PKP--NSSVTAEEVKQFV 144
KP V E++ ++V
Sbjct: 487 LKPEYRGKVDEEDIIEWV 504
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA------- 80
++ DP T +LP G G + + G +VF GY E T DDG+ TGDL
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 81 -YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
+ L G +I+ P E+ES P V + AVIG+PH FGE A VV
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVV 446
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 19/119 (15%)
Query: 41 DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAY-----------RLPD-- 85
DGK GE+ LKG + GY EAT+ L DG+ TGD+A RL D
Sbjct: 379 DGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLI 438
Query: 86 --GTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
G +I S +LE+ HP V++ AV+ IPH + E P AVVVP+ T EE+ +
Sbjct: 439 KSGGEWI-SSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPEELNE 495
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 39 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
+PDG+ G+L +KG + Y N E ++ + W+ +GD RLP+G +
Sbjct: 373 VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDM 431
Query: 91 -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK--PNSSVTAEEVK 141
+SP E+E + QH V + AV+G+ H + A VV+ + S + AEE+K
Sbjct: 432 LKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELK 491
Query: 142 QFVE 145
FV+
Sbjct: 492 AFVK 495
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 35 TSVQLPDGKT-GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG------ 86
T + DG++ GE+ ++G ++F Y N+ +AT +DG+ TGD+A R PDG
Sbjct: 343 TPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG 402
Query: 87 ---THFI------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
T I I E+E+ +HP+V + AV G P GE A +V
Sbjct: 403 RKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIV 453
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 53 VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG--------------THFIISPCELES 98
+F+ Y E T+E D G+ HTGD+A+ DG + + + P E+ES
Sbjct: 434 LFVHYGKDPERTEETWHD-GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVES 492
Query: 99 IFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
QHP V + A+ G+P V G++ A +V
Sbjct: 493 ALIQHPAVLECAITGVPDPVRGQVIKATIV 522
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 24/136 (17%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGW------LHTGDL 79
++ I++ + +Q P G GELC+ G V GY N+ + TKE ++ + TGDL
Sbjct: 787 SVYILNEQSQLQ-PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDL 845
Query: 80 AYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
A LPDGT I E+E +++P V+D V+ H+ A
Sbjct: 846 ARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINA 905
Query: 126 VVVPKPNSSVTAEEVK 141
+V + + ++AE+VK
Sbjct: 906 YLVNR--TQLSAEDVK 919
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 42 GKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
G+TG L +G + GY E +DG+ TGD+ DG +
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435
Query: 91 ----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
++ E+E+ HP V D A++ +P GE ++P+ + + A E+K F+
Sbjct: 436 GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR-DEAPKAAELKAFLR 493
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 45 GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------------- 90
GEL +KG +V GY + T ++G+ +TGD+A +G I
Sbjct: 349 GELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGE 406
Query: 91 -ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134
I P ++E++ +Q P + D +G P D +G++P V + + S
Sbjct: 407 NIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDIS 451
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 42 GKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
G+TG L +G + GY E +DG+ TGD+ DG +
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435
Query: 91 ----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
++ E+E+ HP V D A + P GE ++P+ + + A E+K F+
Sbjct: 436 GGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPR-DEAPKAAELKAFLR 493
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
++IID +V LP G G++ ++ +F GY + + T + D WL GD
Sbjct: 385 VQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 82 RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
+ DG + + I P E+E+ +HP V + AVI P V GE+ A V
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFV 502
Query: 128 V 128
V
Sbjct: 503 V 503
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
++IID +V LP G G++ ++ +F GY + + T + D WL GD
Sbjct: 385 VQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 82 RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
+ DG + + I P E+E+ +HP V + AVI P V GE+ A V
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFV 502
Query: 128 V 128
V
Sbjct: 503 V 503
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 38.9 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
LP G+ G L +G F GY + D +G+ +GDL P+G +
Sbjct: 377 LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQ 436
Query: 91 -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
I+ E+E++ +HP V A++ + ++ GE A +V K + A +V++F
Sbjct: 437 INRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK--EPLRAVQVRRF 494
Query: 144 V 144
+
Sbjct: 495 L 495
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 122 LPAAVVV----PKPNSSVTAEEVKQFVE 145
A V +P+ + A EV+ +VE
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVE 584
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 36.6 bits (83), Expect = 0.006, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLD-----------DDGWLH 75
++I+D T ++ PDG GE+ + GD V GY K + ++ + WL
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 76 TGDLAYRLPDGTHFII 91
TGD + + DG FII
Sbjct: 464 TGDSGF-VTDGKMFII 478
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 36.2 bits (82), Expect = 0.006, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLD-----------DDGWLH 75
++I+D T ++ PDG GE+ + GD V GY K + ++ + WL
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 76 TGDLAYRLPDGTHFII 91
TGD + + DG FII
Sbjct: 464 TGDSGF-VTDGKXFII 478
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 122 LPAAVVV----PKPNSSVTAEEVKQFVE 145
A V +P+ + A EV+ +V
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVR 584
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 122 LPAAVVV----PKPNSSVTAEEVKQFVE 145
A V +P+ + A EV+ +V
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVR 584
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 122 LPAAVVV----PKPNSSVTAEEVKQFVE 145
A V +P+ + A EV+ +V
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVR 584
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 122 LPAAVVVPKPNSSVTAEEVKQFVEFPRK 149
A V + E + + RK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRK 585
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 122 LPAAVVV----PKPNSSVTAEEVKQFVE 145
A V +P+ + A EV+ +V
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVR 584
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 122 LPAAVVV----PKPNSSVTAEEVKQFV 144
A V +P+ + A EV+ +V
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWV 583
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 45 GELCLKGDVFLG-YRNKVEATKEMLDDDGWLHTGDL 79
GE+ +K D+ L Y N+ EAT++ D+ GW TGD+
Sbjct: 349 GEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDI 383
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 72 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHD 117
G+ TGD A + DG +I+ S E+E+ + P V + AV+G D
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 118 VFGELPAAVVVPKPNSS 134
+ G+ AA VV K SS
Sbjct: 563 LTGQAVAAFVVLKNKSS 579
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCL 49
+++H +IIDPVT LPDG GEL
Sbjct: 268 WEDHFYPEIIDPVTGEVLPDGSQGELVF 295
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 30.4 bits (67), Expect = 0.37, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 45 GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI-------------- 90
G +C+ G + +++ + GWL TGDL Y L DG ++
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLYVTGRIKDLIIIRGRN 469
Query: 91 ISPCELESIFRQHPDV 106
I P ++E I Q P++
Sbjct: 470 IWPQDIEYIAEQEPEI 485
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 2 FLVVGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNK 60
+ VG+ K + L F+ A++ D V S L + + +V+ G R++
Sbjct: 4 LVSVGITHKEAEVEELEKARFESDEAVR--DIVESFGLSGSVLLQTSNRVEVYASGARDR 61
Query: 61 VEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIF 100
E +++ DD W+ G A R H LES+
Sbjct: 62 AEELGDLIHDDAWVKRGSEAVR-----HLFRVASGLESMM 96
>pdb|3PSQ|A Chain A, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
Class B Sortase Involved In Pilus Biogenesis
pdb|3PSQ|B Chain B, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
Class B Sortase Involved In Pilus Biogenesis
Length = 206
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 45 GELCLKGDVFLGYRNKV 61
GE L G VFL YRNKV
Sbjct: 67 GEYSLSGSVFLDYRNKV 83
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCL 49
+++H +IIDP T LPDG+ GEL
Sbjct: 266 WEDHFYPEIIDPETGEVLPDGELGELVF 293
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 22 FQEHNAIKIIDPVTSVQLPDGKTGELCL 49
+++H +IIDP T LPDG+ GEL
Sbjct: 266 WEDHFYPEIIDPETGEVLPDGELGELVF 293
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 99 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
I R+ PD E++ I P D+FGEL P+ +S+ T EV+
Sbjct: 82 IGRRAPDGRENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVR 125
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 18 TGKHFQEH-NAIKIIDPVTSVQLPDGKTGELCL 49
G HF E ++IIDP T +P+G+ GEL L
Sbjct: 256 NGXHFWEDCYLVEIIDPETGEPVPEGEIGELVL 288
>pdb|2D9R|A Chain A, Structure Of Conserved Protein Of Unknown Function Pg0164
From Porphyromonas Gingivalis [w83]
Length = 104
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 92 SPCELESIFRQHPDVEDVAVIGIPHDV 118
SP E ++I RQ PD D A + IP DV
Sbjct: 20 SPIEFDAIIRQVPD-XDAAYVEIPFDV 45
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 99 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
I R+ PD E++ I P D+FGEL P+ +S+ T EV+
Sbjct: 82 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVR 125
>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
E.Coli
Length = 731
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLH 75
L +Q+ A K++D +QL +GK L F+GYR A +L + LH
Sbjct: 180 LENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQ-FVGYRGDAAAPTCILLKNNGLH 237
>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
Refinement Against Nmr And Saxs Data
Length = 723
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLH 75
L +Q+ A K++D +QL +GK L F+GYR A +L + LH
Sbjct: 180 LENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQ-FVGYRGDAAAPTCILLKNNGLH 237
>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLH 75
L +Q+ A K++D +QL +GK L F+GYR A +L + LH
Sbjct: 180 LENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQ-FVGYRGDAAAPTCILLKNNGLH 237
>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLH 75
L +Q+ A K++D +QL +GK L F+GYR A +L + LH
Sbjct: 180 LENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQ-FVGYRGDAAAPTCILLKNNGLH 237
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 99 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
I R+ PD E++ I P D+FGEL P+ +S+ T EV+
Sbjct: 57 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVR 100
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 99 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
I R+ PD E++ I P D+FGEL P+ +S+ T EV+
Sbjct: 60 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVR 103
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 99 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
I R+ PD E++ I P D+FGEL P+ +S+ T EV+
Sbjct: 58 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVR 101
>pdb|1D8C|A Chain A, Malate Synthase G Complexed With Magnesium And Glyoxylate
Length = 723
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLH 75
L +Q+ A K++D +QL +GK L F+GYR A +L + LH
Sbjct: 180 LENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQ-FVGYRGDAAAPTCILLKNNGLH 237
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 42 GKTGELCLKG-DVFLGYRNKVEATKEML---------DDDGWLHTGDLAYRLPDG 86
G+TGEL L G + GY + E T E + + TGDL LPDG
Sbjct: 375 GETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDG 429
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 24/128 (18%)
Query: 41 DGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGW--------LHTGDLAYRLPDGT---- 87
+G GEL + G + GY ++ T E D + TGDLA R DG
Sbjct: 406 NGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYV 465
Query: 88 ----------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFG-ELPAAVVVPKPNSSVT 136
F + P E+E+ HP V AV+ + +L A VV + ++
Sbjct: 466 GRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPD 525
Query: 137 AEEVKQFV 144
A E+++ V
Sbjct: 526 AAELRRHV 533
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 196
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 175 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 209
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 196
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 175 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 209
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 196
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 196
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 196
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 196
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR 148
IP D++G+LP + + +S+ ++++F E R
Sbjct: 158 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLR 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,834,795
Number of Sequences: 62578
Number of extensions: 207411
Number of successful extensions: 595
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 77
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)