Query psy4966
Match_columns 149
No_of_seqs 123 out of 1976
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 22:25:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 6.7E-32 2.3E-36 215.1 16.6 147 1-148 326-501 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 9.3E-32 3.2E-36 212.9 15.6 147 1-148 296-466 (503)
3 2d1s_A Luciferase, luciferin 4 100.0 4.2E-31 1.4E-35 211.1 16.6 146 1-147 338-507 (548)
4 3g7s_A Long-chain-fatty-acid-- 100.0 9.1E-31 3.1E-35 209.1 15.2 146 2-148 332-508 (549)
5 3nyq_A Malonyl-COA ligase; A/B 100.0 2.3E-30 7.9E-35 205.1 15.1 145 1-147 300-473 (505)
6 3rix_A Luciferase, luciferin 4 100.0 2E-31 7E-36 212.8 8.5 146 1-147 336-505 (550)
7 3etc_A AMP-binding protein; ad 100.0 6.5E-30 2.2E-34 205.6 16.2 144 1-147 369-544 (580)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 7.3E-30 2.5E-34 203.5 15.6 144 1-147 326-495 (539)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.3E-29 7.7E-34 199.1 16.2 142 2-146 301-467 (504)
10 1amu_A GRSA, gramicidin synthe 100.0 1.4E-29 4.9E-34 203.0 15.1 143 1-147 319-494 (563)
11 4gr5_A Non-ribosomal peptide s 100.0 2.4E-30 8.2E-35 207.5 8.1 145 1-147 355-536 (570)
12 3tsy_A Fusion protein 4-coumar 100.0 4.4E-30 1.5E-34 216.7 8.8 146 1-147 373-547 (979)
13 3r44_A Fatty acyl COA syntheta 100.0 3.5E-29 1.2E-33 198.8 13.4 142 1-147 311-478 (517)
14 1v25_A Long-chain-fatty-acid-C 100.0 8.7E-30 3E-34 203.2 9.3 143 1-146 320-499 (541)
15 3l8c_A D-alanine--poly(phospho 100.0 4.6E-29 1.6E-33 197.8 13.4 145 1-147 293-477 (521)
16 3ivr_A Putative long-chain-fat 100.0 4.7E-30 1.6E-34 203.1 7.6 144 1-147 298-466 (509)
17 1pg4_A Acetyl-COA synthetase; 100.0 6.1E-29 2.1E-33 202.3 14.0 145 1-147 409-586 (652)
18 3o83_A Peptide arylation enzym 100.0 9.1E-30 3.1E-34 203.2 8.7 143 1-146 335-503 (544)
19 3c5e_A Acyl-coenzyme A synthet 100.0 6E-29 2E-33 199.6 12.6 144 1-147 350-527 (570)
20 3fce_A D-alanine--poly(phospho 100.0 3E-28 1E-32 192.9 14.6 144 1-147 290-469 (512)
21 3e7w_A D-alanine--poly(phospho 100.0 4.5E-28 1.5E-32 192.0 15.4 143 1-146 289-467 (511)
22 2v7b_A Benzoate-coenzyme A lig 100.0 6.6E-28 2.2E-32 191.6 15.6 143 1-147 328-497 (529)
23 3rg2_A Enterobactin synthase c 100.0 5.2E-28 1.8E-32 195.6 14.9 142 1-146 330-497 (617)
24 1ry2_A Acetyl-coenzyme A synth 99.9 1.1E-27 3.7E-32 195.4 12.7 145 2-147 416-602 (663)
25 2vsq_A Surfactin synthetase su 99.9 5E-27 1.7E-31 202.8 15.3 143 1-147 749-925 (1304)
26 3ipl_A 2-succinylbenzoate--COA 99.9 2.2E-26 7.6E-31 181.7 13.6 136 1-147 301-462 (501)
27 3ite_A SIDN siderophore synthe 99.9 3.5E-27 1.2E-31 188.6 8.0 145 1-147 322-507 (562)
28 4dg8_A PA1221; ANL superfamily 99.9 1.5E-26 5E-31 187.5 11.4 140 1-145 305-480 (620)
29 3kxw_A Saframycin MX1 syntheta 99.9 1.4E-26 4.9E-31 185.7 10.7 126 16-146 374-527 (590)
30 3gqw_A Fatty acid AMP ligase; 99.9 5.3E-26 1.8E-30 181.7 10.1 124 17-146 386-524 (576)
31 3qov_A Phenylacetate-coenzyme 99.8 6.6E-21 2.3E-25 148.1 10.1 132 1-146 234-399 (436)
32 3t5a_A Long-chain-fatty-acid-- 99.8 7.2E-21 2.5E-25 149.0 7.2 73 16-91 394-478 (480)
33 2y27_A Phenylacetate-coenzyme 99.8 1.8E-20 6.1E-25 145.7 7.5 134 1-146 238-401 (437)
34 2y4o_A Phenylacetate-coenzyme 99.8 3.2E-20 1.1E-24 144.5 7.7 134 1-146 240-405 (443)
35 4gs5_A Acyl-COA synthetase (AM 99.7 2.3E-17 7.9E-22 125.7 5.8 118 1-147 175-319 (358)
36 3hgu_A EHPF; phenazine, antibi 98.6 4.4E-08 1.5E-12 74.2 4.9 70 1-84 261-340 (369)
37 3lax_A Phenylacetate-coenzyme 98.5 1.4E-07 4.8E-12 59.7 5.4 49 92-140 15-63 (109)
38 3gxs_A Phenylacetate-coenzyme 98.1 5.2E-06 1.8E-10 52.5 5.4 41 92-133 15-55 (109)
39 4eql_A 4-substituted benzoates 90.4 1 3.5E-05 36.3 7.5 51 37-103 379-447 (581)
40 4b2g_A GH3-1 auxin conjugating 90.2 2.1 7.2E-05 34.7 9.2 50 37-102 391-458 (609)
41 4epl_A Jasmonic acid-amido syn 82.6 6.6 0.00022 31.7 8.2 50 37-102 386-453 (581)
42 3zxw_B Ribulose bisphosphate c 69.5 13 0.00044 23.4 5.2 40 92-133 69-108 (118)
43 1wdd_S Ribulose bisphosphate c 66.2 20 0.00067 22.9 5.6 40 92-133 82-121 (128)
44 2cvi_A 75AA long hypothetical 65.6 16 0.00056 20.7 5.6 44 92-145 14-57 (83)
45 2zbc_A 83AA long hypothetical 60.1 20 0.0007 20.0 4.9 44 92-145 14-57 (83)
46 1gk8_I Ribulose bisphosphate c 58.8 26 0.00088 22.7 5.2 40 92-133 89-128 (140)
47 1rbl_M Ribulose 1,5 bisphospha 58.3 30 0.001 21.4 5.5 39 92-132 70-108 (109)
48 2djw_A Probable transcriptiona 57.7 19 0.00065 20.9 4.3 44 92-145 14-57 (92)
49 1uwd_A Hypothetical protein TM 56.3 30 0.001 20.7 5.2 29 92-120 61-89 (103)
50 1svd_M Ribulose bisphosphate c 55.2 35 0.0012 21.1 5.3 38 92-131 72-109 (110)
51 3lno_A Putative uncharacterize 47.4 45 0.0015 20.2 5.0 29 92-120 63-92 (108)
52 3hhe_A Ribose-5-phosphate isom 47.2 20 0.00067 25.7 3.6 42 72-113 183-232 (255)
53 4f0h_B Ribulose bisphosphate c 42.9 65 0.0022 20.8 6.6 41 92-133 64-105 (138)
54 2zzt_A Putative uncharacterize 40.5 58 0.002 19.5 5.1 39 94-132 13-51 (107)
55 1bwv_S Rubisco, protein (ribul 37.1 83 0.0028 20.3 6.2 39 92-132 64-104 (138)
56 3dxs_X Copper-transporting ATP 37.0 49 0.0017 17.6 4.5 47 92-146 16-62 (74)
57 3zzp_A TS9, ribosomal protein 35.5 63 0.0022 18.4 6.4 58 84-146 3-67 (77)
58 1m0s_A Ribose-5-phosphate isom 33.3 34 0.0011 23.8 3.0 37 74-113 157-200 (219)
59 1o8b_A Ribose 5-phosphate isom 32.9 34 0.0012 23.8 3.0 37 74-113 156-199 (219)
60 2cg4_A Regulatory protein ASNC 31.6 98 0.0033 19.4 6.3 43 93-145 82-124 (152)
61 3cq1_A Putative uncharacterize 31.4 51 0.0018 19.6 3.3 29 92-120 60-88 (103)
62 3i4p_A Transcriptional regulat 31.4 92 0.0031 20.0 4.8 44 93-146 79-122 (162)
63 2cyy_A Putative HTH-type trans 31.3 98 0.0034 19.4 4.9 22 92-113 79-100 (151)
64 2dbb_A Putative HTH-type trans 29.9 1E+02 0.0036 19.2 5.4 22 92-113 81-102 (151)
65 2xsu_A Catechol 1,2 dioxygenas 28.8 1.6E+02 0.0054 21.7 6.0 57 25-91 138-194 (312)
66 2boy_A 3-chlorocatechol 1,2-di 28.6 1.6E+02 0.0055 20.9 6.1 56 26-91 105-160 (254)
67 3kwm_A Ribose-5-phosphate isom 28.0 47 0.0016 23.2 3.0 37 74-113 162-205 (224)
68 4a4j_A Pacszia, cation-transpo 28.0 43 0.0015 17.4 2.4 46 92-146 16-61 (69)
69 3l7o_A Ribose-5-phosphate isom 27.1 60 0.002 22.7 3.4 40 74-113 157-204 (225)
70 2cfx_A HTH-type transcriptiona 25.8 1.2E+02 0.0042 18.8 5.9 45 92-146 77-121 (144)
71 3ixq_A Ribose-5-phosphate isom 25.8 49 0.0017 23.2 2.7 41 73-113 159-208 (226)
72 3th1_A Chlorocatechol 1,2-diox 25.6 1.9E+02 0.0063 20.7 5.9 56 26-91 102-157 (260)
73 1yj7_A ESCJ; mixed alpha/beta, 25.5 82 0.0028 20.9 3.7 46 92-138 91-139 (171)
74 3byp_A CZRB protein; membrane 25.4 61 0.0021 18.6 2.8 40 93-132 12-53 (94)
75 2e1c_A Putative HTH-type trans 25.1 1E+02 0.0034 20.1 4.1 43 92-144 99-141 (171)
76 1uj6_A Ribose 5-phosphate isom 24.3 73 0.0025 22.2 3.4 41 73-113 160-208 (227)
77 1xkn_A Putative peptidyl-argin 24.2 2.3E+02 0.0077 21.2 6.8 33 81-113 161-206 (355)
78 2jer_A Agmatine deiminase; hyd 23.9 2.4E+02 0.0082 21.4 6.4 33 81-113 162-207 (389)
79 1bxn_I Rubisco, protein (ribul 23.5 87 0.003 20.2 3.4 38 92-131 64-103 (139)
80 2kt2_A Mercuric reductase; nme 23.1 56 0.0019 16.7 2.2 46 92-146 14-59 (69)
81 1cc8_A Protein (metallochapero 22.3 63 0.0022 17.1 2.4 44 92-146 18-62 (73)
82 2azq_A Catechol 1,2-dioxygenas 22.1 2.4E+02 0.0081 20.7 6.1 70 26-105 135-217 (311)
83 1cpz_A Protein (COPZ); copper 21.7 67 0.0023 16.1 2.4 47 92-146 14-60 (68)
84 2xmw_A PACS-N, cation-transpor 21.5 68 0.0023 16.3 2.4 45 92-145 17-61 (71)
85 4dcz_A DNAJ-like protein Mg200 21.4 92 0.0031 18.1 2.8 17 71-90 62-78 (92)
86 1yg0_A COP associated protein; 21.4 64 0.0022 16.1 2.2 46 92-146 15-60 (66)
87 2ewo_A Putative agmatine deimi 21.4 2.3E+02 0.008 21.3 5.9 33 81-113 166-211 (377)
88 3fn5_A Sortase A; sortase-fold 21.2 1.9E+02 0.0066 19.3 8.0 86 40-129 68-161 (187)
89 2crl_A Copper chaperone for su 21.2 1.3E+02 0.0044 17.3 4.3 44 92-146 32-75 (98)
90 2f8m_A Ribose 5-phosphate isom 21.2 93 0.0032 22.0 3.5 40 74-113 173-221 (244)
91 2jz2_A SSL0352 protein; SH3-li 21.1 73 0.0025 17.6 2.2 14 22-35 2-15 (66)
92 2l3m_A Copper-ION-binding prot 21.0 70 0.0024 16.3 2.4 47 92-146 19-65 (71)
93 1aw0_A Menkes copper-transport 20.7 77 0.0026 16.2 2.5 46 92-145 17-62 (72)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=6.7e-32 Score=215.06 Aligned_cols=147 Identities=37% Similarity=0.679 Sum_probs=135.3
Q ss_pred CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~ 65 (149)
++..||+||++.. ..+++|+ |+++++++|+|+++++++|+|+.|||+++|+. +.|||++|+.|.
T Consensus 326 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~ 404 (536)
T 3ni2_A 326 LGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATS 404 (536)
T ss_dssp EEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred ccccccccccchhhhcccccCCccccCCCCCeeE-eCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHH
Confidence 3578999998732 3456788 99999999999888999999999999999999 999999999999
Q ss_pred cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966 66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131 (149)
Q Consensus 66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~ 131 (149)
..|..++||+|||+|++|+||+++|+ +|.|||++|.+||+|.+++|++++++.+|+.++|+|+..+
T Consensus 405 ~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~ 484 (536)
T 3ni2_A 405 RTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSE 484 (536)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred hhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecC
Confidence 99988999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHhhccc
Q psy4966 132 NSSVTAEEVKQFVEFPR 148 (149)
Q Consensus 132 ~~~~~~~~l~~~l~~~~ 148 (149)
+...+.++|+++|++..
T Consensus 485 ~~~~~~~~l~~~l~~~l 501 (536)
T 3ni2_A 485 KSQATEDEIKQYISKQV 501 (536)
T ss_dssp TCCCCHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 88889999999998753
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.98 E-value=9.3e-32 Score=212.92 Aligned_cols=147 Identities=31% Similarity=0.431 Sum_probs=134.8
Q ss_pred CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966 1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD 70 (149)
Q Consensus 1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~ 70 (149)
++..||+||++.. ...++|+ |+|+++++|+|+++|+++|+|+.|||+|+|+. +.|||++|+.|...|..
T Consensus 296 ~~~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 374 (503)
T 4fuq_A 296 VLERYGMTETNMNTSNPYDGDRVPGAVGP-ALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRD 374 (503)
T ss_dssp EEECCEETTTEECBCCCSSSCCCTTEEEE-BCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCT
T ss_pred ccceEcccccCcccccCCCCCCcCCcccc-CCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCC
Confidence 3678999998642 2345788 99999999999888999999999999999999 99999999999999988
Q ss_pred CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966 71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136 (149)
Q Consensus 71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~ 136 (149)
++||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++++++.+|+.++++|+..++...+
T Consensus 375 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 454 (503)
T 4fuq_A 375 DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATID 454 (503)
T ss_dssp TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCC
Confidence 999999999999999999996 999999999999999999999999999999999999999888889
Q ss_pred HHHHHHHhhccc
Q psy4966 137 AEEVKQFVEFPR 148 (149)
Q Consensus 137 ~~~l~~~l~~~~ 148 (149)
.++++++|++..
T Consensus 455 ~~~l~~~l~~~L 466 (503)
T 4fuq_A 455 EAQVLHGLDGQL 466 (503)
T ss_dssp HHHHHHHHBTTB
T ss_pred HHHHHHHHHhhc
Confidence 999999988753
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.97 E-value=4.2e-31 Score=211.15 Aligned_cols=146 Identities=40% Similarity=0.662 Sum_probs=133.9
Q ss_pred CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966 1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD 70 (149)
Q Consensus 1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~ 70 (149)
++..||+||++.. ...++|+ |+|+++++|+|+++++++++|+.|||+++|+. +.|||++++.|+..|..
T Consensus 338 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 416 (548)
T 2d1s_A 338 VRQGYGLTETTSAIIITPEGDDKPGASGK-VVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416 (548)
T ss_dssp CEEEEECGGGSSEEEECCTTCCCTTCCBE-ECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred eeeccccccccceeeecCcccCCCCCCCc-cCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccC
Confidence 4688999998642 3356788 99999999999878999999999999999999 99999999999999977
Q ss_pred CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966 71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136 (149)
Q Consensus 71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~ 136 (149)
++||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.++...+
T Consensus 417 ~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~ 496 (548)
T 2d1s_A 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496 (548)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC
Confidence 999999999999999999997 999999999999999999999999999999999999998877788
Q ss_pred HHHHHHHhhcc
Q psy4966 137 AEEVKQFVEFP 147 (149)
Q Consensus 137 ~~~l~~~l~~~ 147 (149)
.++|+++|++.
T Consensus 497 ~~~l~~~~~~~ 507 (548)
T 2d1s_A 497 EKEVMDYVASQ 507 (548)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 89999999865
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.97 E-value=9.1e-31 Score=209.07 Aligned_cols=146 Identities=29% Similarity=0.487 Sum_probs=125.8
Q ss_pred eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC-
Q psy4966 2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD- 69 (149)
Q Consensus 2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~- 69 (149)
+..||+||++. ....++|+ |+++++++|+|+++|+++++|+.|||+|+|+. +.|||++++.++..|.
T Consensus 332 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 410 (549)
T 3g7s_A 332 NQIWGMTEACPMVTTNPPLRLDKSTTQGV-PMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWY 410 (549)
T ss_dssp EEEEECGGGSSEEEECCGGGGGGTTSCCE-ECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEE
T ss_pred cceEeccccchhhhcCCccccCcCCCccc-cCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhc
Confidence 56899999874 23466788 99999999999888999999999999999999 9999999999999883
Q ss_pred -CCC--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966 70 -DDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132 (149)
Q Consensus 70 -~~~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~ 132 (149)
.+| ||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.++
T Consensus 411 ~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 490 (549)
T 3g7s_A 411 DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPE 490 (549)
T ss_dssp CTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECST
T ss_pred cCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCC
Confidence 456 9999999999999999997 99999999999999999999999999999999999999876
Q ss_pred --CCCCHHHHHHHhhccc
Q psy4966 133 --SSVTAEEVKQFVEFPR 148 (149)
Q Consensus 133 --~~~~~~~l~~~l~~~~ 148 (149)
...+.++|+++|++..
T Consensus 491 ~~~~~~~~~l~~~l~~~L 508 (549)
T 3g7s_A 491 YRGKVDEEDIIEWVRERI 508 (549)
T ss_dssp TTTSCCHHHHHHHHHTTC
T ss_pred ccCcCCHHHHHHHHHHhc
Confidence 5678899999998753
No 5
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.97 E-value=2.3e-30 Score=205.07 Aligned_cols=145 Identities=26% Similarity=0.419 Sum_probs=126.4
Q ss_pred CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCC---CCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966 1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPD---GKTGELCLKGDV-FLGYRNKVEATKEM 67 (149)
Q Consensus 1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~---g~~Gel~v~~~~-~~gY~~~~~~~~~~ 67 (149)
++..||+||++. ....++|+ |+|+++++|+| ++|++++. |+.|||+++|+. +.|||++|+.|+..
T Consensus 300 ~~~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~ 377 (505)
T 3nyq_A 300 VIERYGMTETLMNTSVRADGEPRAGTVGV-PLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAA 377 (505)
T ss_dssp CEEEEEETTTEEEEECCTTSCCCTTCCCE-ECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHT
T ss_pred eecccchhhcccccccCCCCCCCCCCccc-CCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhh
Confidence 468899999863 23456788 99999999999 88888876 899999999999 99999999999999
Q ss_pred cCCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC-
Q psy4966 68 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131 (149)
Q Consensus 68 ~~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~- 131 (149)
|..++||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.+
T Consensus 378 f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~ 457 (505)
T 3nyq_A 378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP 457 (505)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST
T ss_pred hcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC
Confidence 988999999999999999999997 9999999999999999999999999999999999999875
Q ss_pred CCCCCHHHHHHHhhcc
Q psy4966 132 NSSVTAEEVKQFVEFP 147 (149)
Q Consensus 132 ~~~~~~~~l~~~l~~~ 147 (149)
....+.++|+++|++.
T Consensus 458 ~~~~~~~~l~~~l~~~ 473 (505)
T 3nyq_A 458 AAPPALGTLADHVAAR 473 (505)
T ss_dssp TSCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh
Confidence 4567788899988764
No 6
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.97 E-value=2e-31 Score=212.84 Aligned_cols=146 Identities=40% Similarity=0.662 Sum_probs=82.1
Q ss_pred CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966 1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD 70 (149)
Q Consensus 1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~ 70 (149)
++..||+||++. ....++|+ |+|+++++|+|+++++++++|+.|||+|+|+. +.|||++++.|...|..
T Consensus 336 v~~~YG~TE~~~~~~~~~~~~~~~~~vG~-~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~ 414 (550)
T 3rix_A 336 IRQGYGLTETTSAILITPEGDDKPGAVGK-VVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDK 414 (550)
T ss_dssp CEEEEECGGGSSEEEECCTTCCCTTEEEE-ECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred cccccCcCccccceecCCCCCCCCCCccc-ccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCC
Confidence 367899999874 23466788 99999999999888999999999999999999 99999999999999988
Q ss_pred CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966 71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136 (149)
Q Consensus 71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~ 136 (149)
+|||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++++++.+|+.++++|++.++...+
T Consensus 415 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~ 494 (550)
T 3rix_A 415 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 494 (550)
T ss_dssp TSCEEEEEEEEECTTCCEEEC-----------------------------------------------------------
T ss_pred CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCC
Confidence 999999999999999999996 999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHhhcc
Q psy4966 137 AEEVKQFVEFP 147 (149)
Q Consensus 137 ~~~l~~~l~~~ 147 (149)
.++|+++|++.
T Consensus 495 ~~~l~~~~~~~ 505 (550)
T 3rix_A 495 EKEIVDYVASQ 505 (550)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 78888887654
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.97 E-value=6.5e-30 Score=205.64 Aligned_cols=144 Identities=28% Similarity=0.422 Sum_probs=128.7
Q ss_pred CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc-----CC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-----DV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~-----~~-~~gY~~~~~~~~ 65 (149)
++..||+||++. ...+++|+ |+|+++++|+| ++|+++|+|+.|||+++| +. +.|||++|+.|+
T Consensus 369 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~ 446 (580)
T 3etc_A 369 LMEGFGQTETVVTIATFPWMEPKPGSIGK-PTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTE 446 (580)
T ss_dssp CEEEECCTTSSCCEECCTTSCCCTTCCBE-ECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHH
T ss_pred EecccccccccceeecCCCCCCCCCcccc-CCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHH
Confidence 468999999864 23467888 99999999999 789999999999999997 66 999999999999
Q ss_pred cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966 66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131 (149)
Q Consensus 66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~ 131 (149)
+.| .+|||+|||+|++|+||+++|+ +|.|||++|.+||+|.+|+|++++++.+|+.++|+|++.+
T Consensus 447 ~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~ 525 (580)
T 3etc_A 447 ETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTK 525 (580)
T ss_dssp HHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred hhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECC
Confidence 999 5899999999999999999997 9999999999999999999999999999999999999988
Q ss_pred CCCCCH---HHHHHHhhcc
Q psy4966 132 NSSVTA---EEVKQFVEFP 147 (149)
Q Consensus 132 ~~~~~~---~~l~~~l~~~ 147 (149)
+...+. ++|+++|++.
T Consensus 526 ~~~~~~~~~~~l~~~l~~~ 544 (580)
T 3etc_A 526 DYTPSDSLKNELQDHVKNV 544 (580)
T ss_dssp TCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 765543 5777777654
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.97 E-value=7.3e-30 Score=203.51 Aligned_cols=144 Identities=24% Similarity=0.413 Sum_probs=128.3
Q ss_pred CeeeeccCCcccc----------cccCcCccccCC-ceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966 1 MFLVVGLVGKSKQ----------KATLTGKHFQEH-NAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML 68 (149)
Q Consensus 1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~-~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~ 68 (149)
++..||+||.+.. ...++|+ |+++ .+++|+| ++++++|+|+.|||+++|+. +.|||++|+.|+..|
T Consensus 326 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 403 (539)
T 1mdb_A 326 LQQVFGMAEGLVNYTRLDDPEEIIVNTQGK-PMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF 403 (539)
T ss_dssp EEEEEECTTSCEEECCTTSCHHHHHHCCCE-ESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHB
T ss_pred EEEEEcCCCCcccccCCCCcHHhcCCCCCc-ccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhc
Confidence 3678999996531 1246788 8875 5899999 88999999999999999999 999999999999999
Q ss_pred CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966 69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134 (149)
Q Consensus 69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 134 (149)
..++||+|||+|++|+||+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.. ..
T Consensus 404 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~ 482 (539)
T 1mdb_A 404 TEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EA 482 (539)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SC
T ss_pred cCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CC
Confidence 88999999999999999999997 9999999999999999999999999999999999999873 45
Q ss_pred CCHHHHHHHhhcc
Q psy4966 135 VTAEEVKQFVEFP 147 (149)
Q Consensus 135 ~~~~~l~~~l~~~ 147 (149)
.+.++|+++|++.
T Consensus 483 ~~~~~l~~~l~~~ 495 (539)
T 1mdb_A 483 PKAAELKAFLRER 495 (539)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhC
Confidence 7788999998764
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.97 E-value=2.3e-29 Score=199.11 Aligned_cols=142 Identities=30% Similarity=0.526 Sum_probs=129.2
Q ss_pred eeeeccCCccc------ccccCcCccccCCceEEEEcCCCC---ccCCCCCeeEEEEE-cCC-CccccCCchhhhcccCC
Q psy4966 2 FLVVGLVGKSK------QKATLTGKHFQEHNAIKIIDPVTS---VQLPDGKTGELCLK-GDV-FLGYRNKVEATKEMLDD 70 (149)
Q Consensus 2 ~~~~g~~e~~~------~~~~~~g~~p~~~~~~~i~d~~~g---~~~~~g~~Gel~v~-~~~-~~gY~~~~~~~~~~~~~ 70 (149)
+..||+||+.. ....++|. |+++++++++| +++ +++++|+.|||+++ |+. +.|||++|+.|.+.| .
T Consensus 301 ~~~YG~TE~~~~~~~~~~~~~~~g~-p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~ 377 (504)
T 1t5h_X 301 VNIYGTTEAMNSLYMRQPKTGTEMA-PGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-Q 377 (504)
T ss_dssp EEEEEETTTEEEEEEESCSSSSEEB-CCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-E
T ss_pred eeeeccccccccccccCCCCCcccc-CCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-c
Confidence 57899999732 23456788 99999999999 666 89999999999999 888 999999999999999 6
Q ss_pred CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966 71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136 (149)
Q Consensus 71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~ 136 (149)
+|||+|||+|++|+||+++|+ +|.|||++|.+||+|.+|+|++.+++.+|+.++|+|+++++...+
T Consensus 378 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 457 (504)
T 1t5h_X 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS 457 (504)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC
T ss_pred CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC
Confidence 899999999999999999997 999999999999999999999999999999999999998877788
Q ss_pred HHHHHHHhhc
Q psy4966 137 AEEVKQFVEF 146 (149)
Q Consensus 137 ~~~l~~~l~~ 146 (149)
.++|+++|++
T Consensus 458 ~~~l~~~~~~ 467 (504)
T 1t5h_X 458 ADALDTFCRS 467 (504)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999999986
No 10
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.96 E-value=1.4e-29 Score=202.96 Aligned_cols=143 Identities=24% Similarity=0.277 Sum_probs=126.9
Q ss_pred CeeeeccCCcccc------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966 1 MFLVVGLVGKSKQ------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEM 67 (149)
Q Consensus 1 ~~~~~g~~e~~~~------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~ 67 (149)
++..||+||++.. ...++|+ |+|+++++|+| ++++++++|+.|||+++|+. |.|||++|+.|++.
T Consensus 319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~ 396 (563)
T 1amu_A 319 YINAYGPTETTICATTWVATKETIGHSVPIGA-PIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK 396 (563)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBE-ECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHH
T ss_pred EEEEECcCHHhHhheeeecccccCCCCCcccc-eeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhh
Confidence 3678999998632 2236788 99999999999 88999999999999999999 99999999999998
Q ss_pred cCC------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEE
Q psy4966 68 LDD------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127 (149)
Q Consensus 68 ~~~------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v 127 (149)
|.. ++||+|||+|++|+||+++|+ +|.|||++|.+||+|.+++|++.+++.+++.++|++
T Consensus 397 f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~v 476 (563)
T 1amu_A 397 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYF 476 (563)
T ss_dssp EEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEE
T ss_pred cccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEE
Confidence 843 359999999999999999997 999999999999999999999999998899999999
Q ss_pred EeCCCCCCCHHHHHHHhhcc
Q psy4966 128 VPKPNSSVTAEEVKQFVEFP 147 (149)
Q Consensus 128 ~~~~~~~~~~~~l~~~l~~~ 147 (149)
+... ..+.++|+++|++.
T Consensus 477 v~~~--~~~~~~l~~~l~~~ 494 (563)
T 1amu_A 477 VSEK--HIPLEQLRQFSSEE 494 (563)
T ss_dssp EESS--CCCHHHHHHHHHHH
T ss_pred EeCC--CCCHHHHHHHHHhh
Confidence 9764 46788899988764
No 11
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.96 E-value=2.4e-30 Score=207.49 Aligned_cols=145 Identities=24% Similarity=0.239 Sum_probs=78.5
Q ss_pred CeeeeccCCcccc-------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966 1 MFLVVGLVGKSKQ-------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE 66 (149)
Q Consensus 1 ~~~~~g~~e~~~~-------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~ 66 (149)
++..||+||++.. ...++|+ |+++++++|+| ++++++++|+.|||+|+|+. |.|||++++.|++
T Consensus 355 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~ 432 (570)
T 4gr5_A 355 LGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV-PLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAE 432 (570)
T ss_dssp EEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE-ECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHH
T ss_pred EEEeechhhheeeeeeeeecccccCCCccccce-eeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhc
Confidence 3678999997532 2234788 99999999999 88999999999999999999 9999999999999
Q ss_pred ccCC--------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966 67 MLDD--------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA 124 (149)
Q Consensus 67 ~~~~--------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~ 124 (149)
.|.. ++||+|||+|++|+||+++|+ +|.|||++|.+||+|.+++|++.+++.+++.++
T Consensus 433 ~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 512 (570)
T 4gr5_A 433 RFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLV 512 (570)
T ss_dssp HEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------------------
T ss_pred ccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEE
Confidence 8853 379999999999999999997 999999999999999999999999998899999
Q ss_pred EEEEeCCC-CCCCHHHHHHHhhcc
Q psy4966 125 AVVVPKPN-SSVTAEEVKQFVEFP 147 (149)
Q Consensus 125 a~v~~~~~-~~~~~~~l~~~l~~~ 147 (149)
|+|++..+ ...+.++|+++|++.
T Consensus 513 a~vv~~~~~~~~~~~~l~~~l~~~ 536 (570)
T 4gr5_A 513 AYVVAERADAPPDAAELRRHVAEA 536 (570)
T ss_dssp ------------------------
T ss_pred EEEEecCCCCCcCHHHHHHHHHhh
Confidence 99987643 356677888888764
No 12
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.96 E-value=4.4e-30 Score=216.65 Aligned_cols=146 Identities=37% Similarity=0.650 Sum_probs=81.9
Q ss_pred CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~ 65 (149)
++..||+||++.. ...++|+ |+|+++++|+|+++++++++|+.|||+|+|+. +.|||++|+.|+
T Consensus 373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~ 451 (979)
T 3tsy_A 373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATA 451 (979)
T ss_dssp EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred EEeeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhh
Confidence 3678999998632 3456788 99999999999888999999999999999999 999999999999
Q ss_pred cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966 66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131 (149)
Q Consensus 66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~ 131 (149)
+.|..++||+|||++++|++|+++|+ +|.|||++|.+||+|.+++|++++++.+|+.++++|+..+
T Consensus 452 ~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~ 531 (979)
T 3tsy_A 452 ETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSK 531 (979)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------------------------
T ss_pred hhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECC
Confidence 99988999999999999999999997 9999999999999999999999999999999999999887
Q ss_pred CCCCCHHHHHHHhhcc
Q psy4966 132 NSSVTAEEVKQFVEFP 147 (149)
Q Consensus 132 ~~~~~~~~l~~~l~~~ 147 (149)
+...+.++|+++|++.
T Consensus 532 ~~~~~~~~l~~~l~~~ 547 (979)
T 3tsy_A 532 DSELSEDDVKQFVSKQ 547 (979)
T ss_dssp ----------------
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7777788888888765
No 13
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.96 E-value=3.5e-29 Score=198.76 Aligned_cols=142 Identities=29% Similarity=0.514 Sum_probs=127.8
Q ss_pred CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966 1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML 68 (149)
Q Consensus 1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~ 68 (149)
++..||+||++. ....++|+ |+++++++++| +++.+++.| .|||+++|+. +.|||++|+.|...|
T Consensus 311 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f 387 (517)
T 3r44_A 311 VVQGYALTESCGGGTLLLSEDALRKAGSAGR-ATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 387 (517)
T ss_dssp EEEEEECGGGTTCEEEECGGGTTTTTTCCBE-ECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE
T ss_pred EEEeecccccccceeecCCccccccCCCCCc-CCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh
Confidence 367899999853 23466788 99999999999 889999998 8999999999 999999999999999
Q ss_pred CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966 69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134 (149)
Q Consensus 69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 134 (149)
.++||+|||+|++|+||+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.+++++ +.++..
T Consensus 388 -~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~ 465 (517)
T 3r44_A 388 -DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNE 465 (517)
T ss_dssp -ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTT
T ss_pred -cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCC
Confidence 6899999999999999999997 999999999999999999999999999999888888 555667
Q ss_pred CCHHHHHHHhhcc
Q psy4966 135 VTAEEVKQFVEFP 147 (149)
Q Consensus 135 ~~~~~l~~~l~~~ 147 (149)
.+.++|+++|++.
T Consensus 466 ~~~~~l~~~l~~~ 478 (517)
T 3r44_A 466 VSEQQIVEYCGTR 478 (517)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 8889999998764
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.96 E-value=8.7e-30 Score=203.16 Aligned_cols=143 Identities=33% Similarity=0.427 Sum_probs=103.7
Q ss_pred CeeeeccCCcccc--------------------cccCcCccccCCceEEEEcCCCCccCCC--CCeeEEEEEcCC-Cccc
Q psy4966 1 MFLVVGLVGKSKQ--------------------KATLTGKHFQEHNAIKIIDPVTSVQLPD--GKTGELCLKGDV-FLGY 57 (149)
Q Consensus 1 ~~~~~g~~e~~~~--------------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~--g~~Gel~v~~~~-~~gY 57 (149)
++..||+||++.. ...++|+ |+|+++++|+| ++|++++. ++.|||+++|+. +.||
T Consensus 320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY 397 (541)
T 1v25_A 320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGY 397 (541)
T ss_dssp EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBE-ECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSC
T ss_pred eeecccccccccceecccccccccccCccccccccCCCCC-cCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccc
Confidence 3678999998632 1356788 99999999999 88998885 368999999999 9999
Q ss_pred cCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeE
Q psy4966 58 RNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123 (149)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~ 123 (149)
|++|+.|++.|..+|||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++++++.+|+.+
T Consensus 398 ~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~ 477 (541)
T 1v25_A 398 YGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP 477 (541)
T ss_dssp BTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEE
T ss_pred cCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceE
Confidence 9999999999977999999999999999999997 99999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 124 AAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 124 ~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
+|+|++. +...+.++++++|++
T Consensus 478 ~a~vv~~-~~~~~~~~l~~~~~~ 499 (541)
T 1v25_A 478 LAVVVPR-GEKPTPEELNEHLLK 499 (541)
T ss_dssp EECC-------------------
T ss_pred EEEEEEC-CCCCCHHHHHHHHHh
Confidence 9999876 445566778877765
No 15
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.96 E-value=4.6e-29 Score=197.80 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=122.7
Q ss_pred CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~ 65 (149)
++..||+||++.. ...++|+ |+|+++++|+| ++|+++++|+.|||+++|+. +.|||++++.++
T Consensus 293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 370 (521)
T 3l8c_A 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTA 370 (521)
T ss_dssp EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHH
T ss_pred EEeCcCccHHhhhhceeecccccccCCCcccccc-ccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhh
Confidence 3678999998753 2345788 99999999999 88999999999999999999 999999999999
Q ss_pred ccc---CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCC-CCCeEEEEE
Q psy4966 66 EML---DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDV-FGELPAAVV 127 (149)
Q Consensus 66 ~~~---~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~-~g~~~~a~v 127 (149)
+.| +.++||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++.++.. .++.++|+|
T Consensus 371 ~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~v 450 (521)
T 3l8c_A 371 EAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYI 450 (521)
T ss_dssp HHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEE
T ss_pred ccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEE
Confidence 988 45689999999999999999997 999999999999999999999987654 468899999
Q ss_pred EeCCCCCCC-------HHHHHHHhhcc
Q psy4966 128 VPKPNSSVT-------AEEVKQFVEFP 147 (149)
Q Consensus 128 ~~~~~~~~~-------~~~l~~~l~~~ 147 (149)
++.++...+ .++|+++|++.
T Consensus 451 v~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 451 VVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred EecCccccccccchhhHHHHHHHHHhh
Confidence 998764321 46788877764
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.96 E-value=4.7e-30 Score=203.14 Aligned_cols=144 Identities=33% Similarity=0.580 Sum_probs=79.0
Q ss_pred CeeeeccCCcccc--------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCC
Q psy4966 1 MFLVVGLVGKSKQ--------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD 71 (149)
Q Consensus 1 ~~~~~g~~e~~~~--------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~ 71 (149)
++..||+||++.. ...++|+ |+++++++|+| ++++++++|+.|||+++|+. +.|||++++.+...| .+
T Consensus 298 ~~~~YG~TE~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~ 374 (509)
T 3ivr_A 298 FWATFGQSETSGLSTFAPYRDRPKSAGR-PLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RN 374 (509)
T ss_dssp EEEEEEEGGGTEEEEEEEGGGSTTSCCE-ECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GG
T ss_pred EEcccCccccccccccCccccCCCcccc-cCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hc
Confidence 3678999998742 2244788 99999999999 78999999999999999999 999999999999999 48
Q ss_pred CeEEcCceEEEcCCCeEEEE----------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966 72 GWLHTGDLAYRLPDGTHFII----------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 135 (149)
Q Consensus 72 ~~~~TGD~~~~~~~G~~~i~----------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~ 135 (149)
+||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.+++++++.++...
T Consensus 375 g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~ 454 (509)
T 3ivr_A 375 GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI 454 (509)
T ss_dssp GSEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC
Confidence 99999999999999999986 89999999999999999999999999999999999999887777
Q ss_pred CHHHHHHHhhcc
Q psy4966 136 TAEEVKQFVEFP 147 (149)
Q Consensus 136 ~~~~l~~~l~~~ 147 (149)
+.++|+++|++.
T Consensus 455 ~~~~l~~~l~~~ 466 (509)
T 3ivr_A 455 AADALAEFVASL 466 (509)
T ss_dssp ------------
T ss_pred CHHHHHHHHHhh
Confidence 888888888764
No 17
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.96 E-value=6.1e-29 Score=202.32 Aligned_cols=145 Identities=21% Similarity=0.182 Sum_probs=126.7
Q ss_pred CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc--CC-CccccCCchhhhc
Q psy4966 1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKE 66 (149)
Q Consensus 1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~~-~~gY~~~~~~~~~ 66 (149)
++..||+||++. ...+++|+ |+++++++|+| ++|++++.|+.|||+|+| |. +.|||++++.+..
T Consensus 409 i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~-p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~ 486 (652)
T 1pg4_A 409 VVDTWWQTETGGFMITPLPGAIELKAGSATR-PFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486 (652)
T ss_dssp EEEEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHH
T ss_pred EEccccCcccccceecCCCCCcCccCCcccc-CcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHh
Confidence 357899999863 23456788 99999999999 889999999999999999 67 9999999998877
Q ss_pred ccC--CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966 67 MLD--DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130 (149)
Q Consensus 67 ~~~--~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~ 130 (149)
.|. .+|||+|||+|++|+||+++|+ +|.|||++|.+||+|.+|+|++++++..|+.++|+|+++
T Consensus 487 ~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~ 566 (652)
T 1pg4_A 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN 566 (652)
T ss_dssp HHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred hhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEEC
Confidence 663 3789999999999999999997 999999999999999999999999999999999999998
Q ss_pred CCCCCC---HHHHHHHhhcc
Q psy4966 131 PNSSVT---AEEVKQFVEFP 147 (149)
Q Consensus 131 ~~~~~~---~~~l~~~l~~~ 147 (149)
++...+ .++|+++|++.
T Consensus 567 ~~~~~~~~~~~~l~~~l~~~ 586 (652)
T 1pg4_A 567 HGEEPSPELYAEVRNWVRKE 586 (652)
T ss_dssp TTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 776555 46777777654
No 18
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.96 E-value=9.1e-30 Score=203.16 Aligned_cols=143 Identities=27% Similarity=0.484 Sum_probs=80.1
Q ss_pred CeeeeccCCcccc----------cccCcCcccc-CCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966 1 MFLVVGLVGKSKQ----------KATLTGKHFQ-EHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML 68 (149)
Q Consensus 1 ~~~~~g~~e~~~~----------~~~~~g~~p~-~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~ 68 (149)
++..||+||++.. ...++|+ |+ ++++++|+| ++++++|+|+.|||+++|+. +.|||++|+.++..|
T Consensus 335 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 412 (544)
T 3o83_A 335 LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR-PISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVF 412 (544)
T ss_dssp EEEEEECTTSCEEECCTTSCHHHHHHCCCE-ESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHB
T ss_pred EEeeeccccccceeecCCCchhhccCCCce-ecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhC
Confidence 3678999997632 2356788 75 899999999 99999999999999999999 999999999999999
Q ss_pred CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966 69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134 (149)
Q Consensus 69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 134 (149)
..++||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++++++.+|+.++|+++..+ ..
T Consensus 413 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~ 491 (544)
T 3o83_A 413 DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PE 491 (544)
T ss_dssp CTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------------
T ss_pred CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CC
Confidence 88999999999999999999997 9999999999999999999999999999999999999875 34
Q ss_pred CCHHHHHHHhhc
Q psy4966 135 VTAEEVKQFVEF 146 (149)
Q Consensus 135 ~~~~~l~~~l~~ 146 (149)
.+.+.++++|++
T Consensus 492 ~~~~~l~~~~~~ 503 (544)
T 3o83_A 492 LKAVVLRRHLME 503 (544)
T ss_dssp ------------
T ss_pred CCHHHHHHHHHh
Confidence 566677777765
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.96 E-value=6e-29 Score=199.62 Aligned_cols=144 Identities=26% Similarity=0.346 Sum_probs=125.8
Q ss_pred CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEE-----cCC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLK-----GDV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~-----~~~-~~gY~~~~~~~~ 65 (149)
++..||+||++. ....++|+ |+|+++++|+| ++|+++|+|+.|||+++ |+. +.|||++++.|.
T Consensus 350 i~~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~ 427 (570)
T 3c5e_A 350 IRESYGQTETGLTCMVSKTMKIKPGYMGT-AASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427 (570)
T ss_dssp CEEEEEETTTEEEEECCTTSCCCTTCCCE-ECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHH
T ss_pred hhhccchhhcccceecCcccccCCCcccc-cCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhh
Confidence 468999999863 23456788 99999999999 88999999999999999 888 999999999999
Q ss_pred cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966 66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131 (149)
Q Consensus 66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~ 131 (149)
..| .++||+|||++++|++|+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.+
T Consensus 428 ~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~ 506 (570)
T 3c5e_A 428 ANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS 506 (570)
T ss_dssp HTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECG
T ss_pred hhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECC
Confidence 999 4899999999999999999997 9999999999999999999999999999999999999876
Q ss_pred CCC-CC----HHHHHHHhhcc
Q psy4966 132 NSS-VT----AEEVKQFVEFP 147 (149)
Q Consensus 132 ~~~-~~----~~~l~~~l~~~ 147 (149)
+.. .+ .++|+++|++.
T Consensus 507 ~~~~~~~~~~~~~l~~~l~~~ 527 (570)
T 3c5e_A 507 QFLSHDPEQLTKELQQHVKSV 527 (570)
T ss_dssp GGTTSCHHHHHHHHHHHHHHH
T ss_pred cccCcchHHHHHHHHHHHHhh
Confidence 531 12 45677776543
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.96 E-value=3e-28 Score=192.92 Aligned_cols=144 Identities=24% Similarity=0.301 Sum_probs=125.4
Q ss_pred CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~ 65 (149)
++..||+||++.. ...++|+ |+++++++++| ++|+++++|+.|||+++|+. +.|||++|+.++
T Consensus 290 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 367 (512)
T 3fce_A 290 IMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTE 367 (512)
T ss_dssp EEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHH
T ss_pred EEeCcccChhhhheeeEEeccccccccCCCcccc-ccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhh
Confidence 3678999998742 2345788 99999999999 89999999999999999999 999999999999
Q ss_pred ccc---CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966 66 EML---DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128 (149)
Q Consensus 66 ~~~---~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~ 128 (149)
..| ++++||+|||+|++ ++|+++|+ +|.|||++|.+||+|.+++|+++++...++.++|+|+
T Consensus 368 ~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv 446 (512)
T 3fce_A 368 KAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVV 446 (512)
T ss_dssp HHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred hccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEe
Confidence 988 34679999999999 79999997 9999999999999999999999999988899999999
Q ss_pred eCCCCCCCH----HHHHHHhhcc
Q psy4966 129 PKPNSSVTA----EEVKQFVEFP 147 (149)
Q Consensus 129 ~~~~~~~~~----~~l~~~l~~~ 147 (149)
+.++...+. ++|+++|++.
T Consensus 447 ~~~~~~~~~~~~~~~l~~~l~~~ 469 (512)
T 3fce_A 447 PGEHSFEKEFKLTSAIKKELNER 469 (512)
T ss_dssp ECSCCCSSHHHHHHHHHHHHHTT
T ss_pred cCCccccchhhhHHHHHHHHHhh
Confidence 887654443 4577777654
No 21
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.96 E-value=4.5e-28 Score=191.97 Aligned_cols=143 Identities=24% Similarity=0.301 Sum_probs=123.1
Q ss_pred CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~ 65 (149)
++..||+||++.. ...++|+ |+|+++++|+| ++|+++|+|+.|||+++|+. +.|||++|+.|+
T Consensus 289 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 366 (511)
T 3e7w_A 289 IFNTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTE 366 (511)
T ss_dssp EEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHH
T ss_pred EEeCcccchheeeeeEEeccccccccCCcCCCcc-eeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccch
Confidence 3678999998642 2234788 99999999999 88999999999999999999 999999999999
Q ss_pred cccCC-CC--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966 66 EMLDD-DG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128 (149)
Q Consensus 66 ~~~~~-~~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~ 128 (149)
..|.. ++ ||+|||+|++ +||+++|+ +|.|||++|.+||+|.+++|++.+++..++.++++++
T Consensus 367 ~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv 445 (511)
T 3e7w_A 367 KAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIV 445 (511)
T ss_dssp HHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEE
T ss_pred hhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEE
Confidence 98842 23 7999999999 59999997 9999999999999999999999999989999999999
Q ss_pred eCCCCCCCH----HHHHHHhhc
Q psy4966 129 PKPNSSVTA----EEVKQFVEF 146 (149)
Q Consensus 129 ~~~~~~~~~----~~l~~~l~~ 146 (149)
..++...+. ++|+++|++
T Consensus 446 ~~~~~~~~~~~~~~~l~~~l~~ 467 (511)
T 3e7w_A 446 PEEHEFEKEFQLTSAIKKELAA 467 (511)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHH
T ss_pred eccccccchhhHHHHHHHHHHh
Confidence 987655553 556666654
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.96 E-value=6.6e-28 Score=191.60 Aligned_cols=143 Identities=29% Similarity=0.398 Sum_probs=125.0
Q ss_pred CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966 1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD 70 (149)
Q Consensus 1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~ 70 (149)
++..||+||++. ....++|+ |+|+++++|+| ++|+++|+|+.|||+++|+. +.|||++++.+...| .
T Consensus 328 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~ 404 (529)
T 2v7b_A 328 ILDGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-L 404 (529)
T ss_dssp EEEEEECTTTSSEEEECCTTCCCTTSCCE-ECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-E
T ss_pred eeeeEchhhcCceeeccccCCCccCCccc-CCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-h
Confidence 367899999843 23457888 99999999999 88999999999999999999 999999999999998 4
Q ss_pred CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966 71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136 (149)
Q Consensus 71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~ 136 (149)
++||+|||+++++++|+++|+ +|.|||++|.+||+|.+++|++. +..+++.+++++++.++...+
T Consensus 405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~ 483 (529)
T 2v7b_A 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS 483 (529)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC
T ss_pred cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc
Confidence 899999999999999999997 99999999999999999999999 666788899999987654322
Q ss_pred ---HHHHHHHhhcc
Q psy4966 137 ---AEEVKQFVEFP 147 (149)
Q Consensus 137 ---~~~l~~~l~~~ 147 (149)
.++|+++|++.
T Consensus 484 ~~~~~~l~~~l~~~ 497 (529)
T 2v7b_A 484 EILAEELKAFVKDR 497 (529)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhh
Confidence 35788888764
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.95 E-value=5.2e-28 Score=195.59 Aligned_cols=142 Identities=24% Similarity=0.408 Sum_probs=127.8
Q ss_pred CeeeeccCCccccc----------ccCcCcccc-CCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966 1 MFLVVGLVGKSKQK----------ATLTGKHFQ-EHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML 68 (149)
Q Consensus 1 ~~~~~g~~e~~~~~----------~~~~g~~p~-~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~ 68 (149)
++..||+||++... ..++|+ |+ ++++++|+| ++++++|.|+.|||+|+|+. +.|||++|+.|+..|
T Consensus 330 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f 407 (617)
T 3rg2_A 330 LQQVFGMAEGLVNYTRLDDSAEKIIHTQGY-PMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF 407 (617)
T ss_dssp EEEEEEETTEEEEECCTTSCHHHHHHCCCE-ESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHB
T ss_pred EEEEeccCcceeecccCCCcccccccCCCc-cCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhcc
Confidence 36789999976321 235677 76 788999999 89999999999999999999 999999999999999
Q ss_pred CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966 69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134 (149)
Q Consensus 69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 134 (149)
..++||+|||++++++||+++|+ +|.|||++|.+||+|.+++|++.+++..|+.++++++..+ .
T Consensus 408 ~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~ 485 (617)
T 3rg2_A 408 DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--P 485 (617)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--C
T ss_pred CCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--C
Confidence 88999999999999999999997 9999999999999999999999999998999999999876 4
Q ss_pred CCHHHHHHHhhc
Q psy4966 135 VTAEEVKQFVEF 146 (149)
Q Consensus 135 ~~~~~l~~~l~~ 146 (149)
.+.+++++++++
T Consensus 486 ~~~~~l~~~l~~ 497 (617)
T 3rg2_A 486 LRAVQVRRFLRE 497 (617)
T ss_dssp CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHh
Confidence 678889998876
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.95 E-value=1.1e-27 Score=195.38 Aligned_cols=145 Identities=23% Similarity=0.208 Sum_probs=121.8
Q ss_pred eeeeccCCccc------------ccccCcCccccCCceEEEEcCCCCccCCC-CCeeEEEEEc--CC-CccccCCchhhh
Q psy4966 2 FLVVGLVGKSK------------QKATLTGKHFQEHNAIKIIDPVTSVQLPD-GKTGELCLKG--DV-FLGYRNKVEATK 65 (149)
Q Consensus 2 ~~~~g~~e~~~------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~-g~~Gel~v~~--~~-~~gY~~~~~~~~ 65 (149)
+..||+||++. ...+++|+ |+++++++|+|+++|++++. |+.|||+++| |. +.|||++++.+.
T Consensus 416 ~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~ 494 (663)
T 1ry2_A 416 VDTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL 494 (663)
T ss_dssp EECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHH
T ss_pred EEeECCccccCeeeccCCCCCcccCCCcccc-CcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHH
Confidence 57899999863 23456788 99999999999438999988 9999999999 46 999999999988
Q ss_pred cccCC--CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEe
Q psy4966 66 EMLDD--DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129 (149)
Q Consensus 66 ~~~~~--~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~ 129 (149)
..|.. +|||+|||+|++|+||+++|+ +|.|||++|.+||+|.+|+|++.+++..|+.++|+|++
T Consensus 495 ~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~ 574 (663)
T 1ry2_A 495 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL 574 (663)
T ss_dssp HHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEE
T ss_pred HhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEE
Confidence 87643 789999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCC---C-C------HHHHHHHhhcc
Q psy4966 130 KPNSS---V-T------AEEVKQFVEFP 147 (149)
Q Consensus 130 ~~~~~---~-~------~~~l~~~l~~~ 147 (149)
+++.. . + .++|+++|++.
T Consensus 575 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 602 (663)
T 1ry2_A 575 KNKSSWSTATDDELQDIKKHLVFTVRKD 602 (663)
T ss_dssp C------------CCSHHHHHHHHHHHH
T ss_pred cCCCccccccchhHHHHHHHHHHHHHHh
Confidence 87643 2 2 46777777653
No 25
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.95 E-value=5e-27 Score=202.77 Aligned_cols=143 Identities=29% Similarity=0.366 Sum_probs=126.7
Q ss_pred CeeeeccCCcccc-------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966 1 MFLVVGLVGKSKQ-------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE 66 (149)
Q Consensus 1 ~~~~~g~~e~~~~-------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~ 66 (149)
++..||+||++.. ...++|+ |+++++++|+| ++++++|.|..|||+|+|+. +.|||++|+.|++
T Consensus 749 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~ 826 (1304)
T 2vsq_A 749 LINCYGPTEGTVFATAHVVHDLPDSISSLPIGK-PISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKE 826 (1304)
T ss_dssp EEEEECCGGGSSCSEEEECCCCCSSCSSCCCBE-ECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHH
T ss_pred EEEeEChhHHhHHheeeeccCccccCCCCCCce-eeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchh
Confidence 3678999998642 1235788 99999999999 88999999999999999999 9999999999999
Q ss_pred ccCC------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEE
Q psy4966 67 MLDD------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 126 (149)
Q Consensus 67 ~~~~------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~ 126 (149)
.|.. ++||+|||+|++++||+|+|+ +|.|||++|.+||+|.+|+|++.++...++.++|+
T Consensus 827 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~ 906 (1304)
T 2vsq_A 827 KFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAY 906 (1304)
T ss_dssp HEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEE
T ss_pred hhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEE
Confidence 9842 459999999999999999997 99999999999999999999999888888999999
Q ss_pred EEeCCCCCCCHHHHHHHhhcc
Q psy4966 127 VVPKPNSSVTAEEVKQFVEFP 147 (149)
Q Consensus 127 v~~~~~~~~~~~~l~~~l~~~ 147 (149)
++... ..+.++|+++|++.
T Consensus 907 vv~~~--~~~~~~l~~~l~~~ 925 (1304)
T 2vsq_A 907 LVNRT--QLSAEDVKAHLKKQ 925 (1304)
T ss_dssp EECSS--SSCHHHHHHHHHHH
T ss_pred EeCCC--CCCHHHHHHHHHHh
Confidence 98765 46778899988764
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.94 E-value=2.2e-26 Score=181.66 Aligned_cols=136 Identities=23% Similarity=0.481 Sum_probs=119.7
Q ss_pred CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966 1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML 68 (149)
Q Consensus 1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~ 68 (149)
++..||+||++. ....++|+ |+++++++++|+ + ++..|||+++|+. +.|||++++.+.. |
T Consensus 301 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~-~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~ 372 (501)
T 3ipl_A 301 IYNSFGMTETCSQFLTATPEMLHARPDTVGM-PSANVDVKIKNP-N-----KEGHGELMIKGANVMNGYLYPTDLTGT-F 372 (501)
T ss_dssp EEEEEEEGGGTEEEEEECHHHHHHCTTCCBE-ECTTCEEEEESC-C-----SSCCEEEEEESTTSCSCCSBSTTCCCS-E
T ss_pred EeccccccccccceeecCccccccCCCCCCC-CCCCcEEEEecC-C-----CCCccEEEEeccchhhhhCcChhhcch-h
Confidence 367899999864 23467888 999999999994 3 4677999999999 9999999999887 5
Q ss_pred CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966 69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134 (149)
Q Consensus 69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 134 (149)
.+|||+|||+|++|++|+++|+ +|.|||++|.+||+|.+++|++.+++.+|+.++++++... .
T Consensus 373 -~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~--~ 449 (501)
T 3ipl_A 373 -ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES--D 449 (501)
T ss_dssp -ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--C
T ss_pred -cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC--C
Confidence 5899999999999999999997 9999999999999999999999999999999999998743 5
Q ss_pred CCHHHHHHHhhcc
Q psy4966 135 VTAEEVKQFVEFP 147 (149)
Q Consensus 135 ~~~~~l~~~l~~~ 147 (149)
.+.++|+++|++.
T Consensus 450 ~~~~~l~~~l~~~ 462 (501)
T 3ipl_A 450 ISKAQLIAYLSKH 462 (501)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh
Confidence 6788999988765
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.94 E-value=3.5e-27 Score=188.62 Aligned_cols=145 Identities=19% Similarity=0.259 Sum_probs=77.5
Q ss_pred CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966 1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD 69 (149)
Q Consensus 1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~ 69 (149)
++..||+||++. ....++|+ |+++++++++|++++.++++|+.|||+++|+. +.|||++|+.+...+
T Consensus 322 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~- 399 (562)
T 3ite_A 322 LVNVYGPTEVTIGCSAGRILPDSDTRCIGH-PLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD- 399 (562)
T ss_dssp EEEEECCGGGCSCSEEEECCTTSCTTEEEE-ECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-
T ss_pred EEEeeccchheeeeeeeeecCCCCCccccc-cCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-
Confidence 367899999863 22345777 99999999999777899999999999999999 999999999888765
Q ss_pred CCC--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcC-CCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966 70 DDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQH-PDVEDVAVIGIPHDVFGELPAAVVVPKPN 132 (149)
Q Consensus 70 ~~~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~-~~V~~~~v~~~~~~~~g~~~~a~v~~~~~ 132 (149)
.+| ||+|||+|++|+||+++|+ +|.|||++|.++ +.+.+++|++.+++..++..+++++...+
T Consensus 400 ~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~ 479 (562)
T 3ite_A 400 INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG 479 (562)
T ss_dssp ETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------------------------
T ss_pred CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccc
Confidence 344 9999999999999999997 999999999998 77889999999998888776666555433
Q ss_pred CCCC-------------HHHHHHHhhcc
Q psy4966 133 SSVT-------------AEEVKQFVEFP 147 (149)
Q Consensus 133 ~~~~-------------~~~l~~~l~~~ 147 (149)
.... .++|+++|++.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 507 (562)
T 3ite_A 480 AAVRGELRWINENYKEINNSLRQACEQT 507 (562)
T ss_dssp ----------------------------
T ss_pred ccccccccccccchhhHHHHHHHHHHhh
Confidence 2222 23677777654
No 28
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.94 E-value=1.5e-26 Score=187.49 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=114.4
Q ss_pred CeeeeccCCcccc-------------cccCcCccccCCceEEEEcCCCCcc-CCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966 1 MFLVVGLVGKSKQ-------------KATLTGKHFQEHNAIKIIDPVTSVQ-LPDGKTGELCLKGDV-FLGYRNKVEATK 65 (149)
Q Consensus 1 ~~~~~g~~e~~~~-------------~~~~~g~~p~~~~~~~i~d~~~g~~-~~~g~~Gel~v~~~~-~~gY~~~~~~~~ 65 (149)
++..||+||++.. ...++|+ |+++++++|+| +++++ +|+|+.|||+|+|+. +.|||++|+.|+
T Consensus 305 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~ 382 (620)
T 4dg8_A 305 LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK-AIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTR 382 (620)
T ss_dssp EEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE-ECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHH
T ss_pred EEeeEchhhhhhheEEEeccccccCCCCCCcee-cccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhh
Confidence 3678999998642 2346788 99999999999 77766 799999999999999 999999999999
Q ss_pred cccCCC-------CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966 66 EMLDDD-------GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA 124 (149)
Q Consensus 66 ~~~~~~-------~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~ 124 (149)
..|..+ +||+|||++++++||+++|+ +|.|||++|.+||+|.+|+|++.++...++.++
T Consensus 383 ~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~ 462 (620)
T 4dg8_A 383 ASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLC 462 (620)
T ss_dssp HHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEE
T ss_pred hhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEE
Confidence 999643 79999999999999999997 999999999999999999999998886555554
Q ss_pred EEEEeCCCCCCCHHHHHHHhh
Q psy4966 125 AVVVPKPNSSVTAEEVKQFVE 145 (149)
Q Consensus 125 a~v~~~~~~~~~~~~l~~~l~ 145 (149)
+++ ... ....+.+.+.|.
T Consensus 463 ~~~-~~~--~~~~~~l~~~Lp 480 (620)
T 4dg8_A 463 AWT-GKA--DASPQALLRQLP 480 (620)
T ss_dssp EEE-ECT--TCCCHHHHHHSC
T ss_pred EEe-cCh--HHHHHHHHHhCh
Confidence 444 332 223355555443
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.94 E-value=1.4e-26 Score=185.69 Aligned_cols=126 Identities=20% Similarity=0.264 Sum_probs=106.1
Q ss_pred cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC------CC--eEEcCceEEEcCCC
Q psy4966 16 TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DG--WLHTGDLAYRLPDG 86 (149)
Q Consensus 16 ~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~G 86 (149)
.++|+ |+++ ++|+|+++++++++|+.|||+|+|+. +.|||++|+.|++.|.. +| ||+|||+|++| +|
T Consensus 374 ~~~G~-p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG 449 (590)
T 3kxw_A 374 VSSGN-PIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-EN 449 (590)
T ss_dssp ECCCE-ESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TT
T ss_pred eccCC-CCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CC
Confidence 45677 8888 88999666999999999999999999 99999999999999853 24 99999999999 99
Q ss_pred eEEEE--------------ChHHHHHHH-hcCCCcc--cEEEEeeecCCCCCeEEEEEEeCCCC--CCCHHHHHHHhhc
Q psy4966 87 THFII--------------SPCELESIF-RQHPDVE--DVAVIGIPHDVFGELPAAVVVPKPNS--SVTAEEVKQFVEF 146 (149)
Q Consensus 87 ~~~i~--------------~~~eIE~~l-~~~~~V~--~~~v~~~~~~~~g~~~~a~v~~~~~~--~~~~~~l~~~l~~ 146 (149)
+++|+ +|.|||++| ..+|.|. +|+|++++++. ++.+++++++.++. ..+.+++.++|++
T Consensus 450 ~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~ 527 (590)
T 3kxw_A 450 ELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFE 527 (590)
T ss_dssp EEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHH
Confidence 99997 899999999 8899998 89999998876 67888888887653 3445666666654
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.93 E-value=5.3e-26 Score=181.68 Aligned_cols=124 Identities=22% Similarity=0.377 Sum_probs=103.6
Q ss_pred CcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE----
Q psy4966 17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII---- 91 (149)
Q Consensus 17 ~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~---- 91 (149)
++|+ |+|+++++|+| ++|+++++|+.|||+++|+. +.|||++++.+...+ .+|||+|||+|++ +||+++|+
T Consensus 386 ~~G~-p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~d 461 (576)
T 3gqw_A 386 NCGK-ALPEHGIEIRN-EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIK 461 (576)
T ss_dssp BCCE-ECTTCEEEEEC-TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETT
T ss_pred ecCC-cCCCCeEEEEC-CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCc
Confidence 6788 99999999999 99999999999999999999 999999999887766 6899999999999 69999997
Q ss_pred ----------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 ----------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ----------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
+|.|||++|.+||+|.+++|++..++. +.+.++++.........+++.++|++
T Consensus 462 d~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~ 524 (576)
T 3gqw_A 462 DLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAA 524 (576)
T ss_dssp TCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHH
Confidence 999999999999999999888887764 34555555554433334455555543
No 31
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.84 E-value=6.6e-21 Score=148.13 Aligned_cols=132 Identities=22% Similarity=0.242 Sum_probs=104.6
Q ss_pred CeeeeccCCcccc-c----c--cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966 1 MFLVVGLVGKSKQ-K----A--TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW 73 (149)
Q Consensus 1 ~~~~~g~~e~~~~-~----~--~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~ 73 (149)
++..||+||++.. . . ...+. |.+++.++++||++|+++++|+.|||+++|.. ...+ ..+|
T Consensus 234 v~~~YG~TE~~~~~~~~~~~~~~g~~~-~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~-----------~~~~-~~~~ 300 (436)
T 3qov_A 234 AYNSFGMTEMNGPGVAFECQEQNGMHF-WEDCYLVEIIDPETGEPVPEGEIGELVLTTLD-----------REMM-PLIR 300 (436)
T ss_dssp EEEEEEEGGGTEEEEEEECTTCSSEEE-CTTTEEEEEECTTTCSBCSTTCCEEEEEEESS-----------CCSS-CCCS
T ss_pred EEecCcchhhcCCeeEEecCCCCeeEE-ccCceEEEEEECCCCCCCCCCCceEEEEeccC-----------cCCc-eEEE
Confidence 3678999998421 1 1 11233 55799999999889999999999999999854 1223 4789
Q ss_pred EEcCceEEEcCCC------e---EEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966 74 LHTGDLAYRLPDG------T---HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130 (149)
Q Consensus 74 ~~TGD~~~~~~~G------~---~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~ 130 (149)
|+|||+++++++| + ++|+ +|.|||++|.+||+|.+++|++.+++..++.++++|++.
T Consensus 301 y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~ 380 (436)
T 3qov_A 301 YRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS 380 (436)
T ss_dssp EEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc
Confidence 9999999999998 5 4554 999999999999999999999999888889999999998
Q ss_pred CCCCCC----HHHHHHHhhc
Q psy4966 131 PNSSVT----AEEVKQFVEF 146 (149)
Q Consensus 131 ~~~~~~----~~~l~~~l~~ 146 (149)
+...+ .+++.++|++
T Consensus 381 -~~~~~~~~~~~~l~~~l~~ 399 (436)
T 3qov_A 381 -DLSTDNYIELEKIRRDIIR 399 (436)
T ss_dssp -TTCCCCHHHHHHHHHHHHH
T ss_pred -CccccchhhHHHHHHHHHH
Confidence 65554 4566666554
No 32
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.83 E-value=7.2e-21 Score=149.01 Aligned_cols=73 Identities=32% Similarity=0.574 Sum_probs=66.6
Q ss_pred cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC-----------CCCeEEcCceEEEc
Q psy4966 16 TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-----------DDGWLHTGDLAYRL 83 (149)
Q Consensus 16 ~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~-----------~~~~~~TGD~~~~~ 83 (149)
.++|+ |++ ++++|+|+++++++|+|++|||+|+|+. |.|||++|+.|++.|. .++||+|||+|+++
T Consensus 394 ~~~G~-p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 394 ISYML-PRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp ECEEC-CSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred eecCc-ccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 46788 999 9999999666899999999999999999 9999999999999985 46799999999997
Q ss_pred CCCeEEEE
Q psy4966 84 PDGTHFII 91 (149)
Q Consensus 84 ~~G~~~i~ 91 (149)
||+|+|+
T Consensus 472 -dG~l~~~ 478 (480)
T 3t5a_A 472 -DGKMFII 478 (480)
T ss_dssp -TTEEEEC
T ss_pred -CCEEEEe
Confidence 9999984
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.82 E-value=1.8e-20 Score=145.72 Aligned_cols=134 Identities=25% Similarity=0.292 Sum_probs=102.5
Q ss_pred CeeeeccCCc-cc-ccc----cCcCc-cccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966 1 MFLVVGLVGK-SK-QKA----TLTGK-HFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW 73 (149)
Q Consensus 1 ~~~~~g~~e~-~~-~~~----~~~g~-~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~ 73 (149)
++..||+||+ +. ... ...|. .|.+++.++|+|+++|+++|+|+.|||+++|.. ...| .++|
T Consensus 238 v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t-----------~~~~-~~~~ 305 (437)
T 2y27_A 238 AVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT-----------KEAL-PIIR 305 (437)
T ss_dssp EEEEEEETTTTEEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS-----------CSSS-CCCS
T ss_pred EEecCCchhhcCCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC-----------cCCc-hhhe
Confidence 3678999997 32 111 11122 145789999999777999999999999998843 2223 4689
Q ss_pred EEcCceEEEcC-CCeE-----EEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966 74 LHTGDLAYRLP-DGTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133 (149)
Q Consensus 74 ~~TGD~~~~~~-~G~~-----~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~ 133 (149)
|+|||++++++ +|++ +|+ +|.|||++|.+||+|.++++++++++..++.++++|++.++.
T Consensus 306 y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~ 385 (437)
T 2y27_A 306 YRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385 (437)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT
T ss_pred eecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc
Confidence 99999999998 6985 554 999999999999999999999998887788999999987654
Q ss_pred C---CCHHHHHHHhhc
Q psy4966 134 S---VTAEEVKQFVEF 146 (149)
Q Consensus 134 ~---~~~~~l~~~l~~ 146 (149)
. .+.++++++|++
T Consensus 386 ~~~~~~~~~l~~~l~~ 401 (437)
T 2y27_A 386 APDTAAIQVAKQALAY 401 (437)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHH
Confidence 3 234556666654
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.81 E-value=3.2e-20 Score=144.54 Aligned_cols=134 Identities=25% Similarity=0.268 Sum_probs=101.9
Q ss_pred CeeeeccCCcc-c-ccc----cCcCc-cccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966 1 MFLVVGLVGKS-K-QKA----TLTGK-HFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW 73 (149)
Q Consensus 1 ~~~~~g~~e~~-~-~~~----~~~g~-~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~ 73 (149)
++..||+||++ . ... ...|. .|.+++.++++|+++|+++|+|+.|||+++|.. ...| ..+|
T Consensus 240 v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t-----------~~~~-p~~~ 307 (443)
T 2y4o_A 240 ALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT-----------KEAM-PVIR 307 (443)
T ss_dssp EEEEEEETTTTEEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS-----------CSSS-CCSS
T ss_pred EEeccCchhhcCCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC-----------cccC-hhhe
Confidence 36789999973 2 111 11132 145789999999777999999999999999843 1223 4689
Q ss_pred EEcCceEEEcCC-CeE-----EEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC--
Q psy4966 74 LHTGDLAYRLPD-GTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP-- 131 (149)
Q Consensus 74 ~~TGD~~~~~~~-G~~-----~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~-- 131 (149)
|+|||+++++++ |++ +|+ +|.|||++|.+||+|.++++++++++..++.++++|++.+
T Consensus 308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~ 387 (443)
T 2y4o_A 308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387 (443)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHH
T ss_pred eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcc
Confidence 999999999999 986 554 9999999999999999999999988777888999999875
Q ss_pred CC---CCCHHHHHHHhhc
Q psy4966 132 NS---SVTAEEVKQFVEF 146 (149)
Q Consensus 132 ~~---~~~~~~l~~~l~~ 146 (149)
+. ..+.++++++|++
T Consensus 388 ~~~~~~~~~~~l~~~l~~ 405 (443)
T 2y4o_A 388 AASVTDGERAALARELQH 405 (443)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHH
Confidence 21 2334566666654
No 35
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.68 E-value=2.3e-17 Score=125.66 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=84.8
Q ss_pred CeeeeccCCccccc---------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCC
Q psy4966 1 MFLVVGLVGKSKQK---------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDD 71 (149)
Q Consensus 1 ~~~~~g~~e~~~~~---------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~ 71 (149)
++..||+||++... .+.+|. ++|++.+.+ +..|||+++|+. ..+
T Consensus 175 ~~~~YG~TEt~~~~~~~~~~~~~~g~~~~-~~pgv~~~~-----------~~~Gel~~~g~~---------------~~~ 227 (358)
T 4gs5_A 175 VYQSYGMTETVSHVALKALNGPEASELYV-FLPGIQYGV-----------DERGCLHISGAV---------------TNG 227 (358)
T ss_dssp EEEEEECGGGSSEEEEEECSSTTCCSCEE-ECTTCEEEE-----------CTTSEEEEESGG---------------GTT
T ss_pred EEeccccccccceeecccccccccceeec-cCCCeEEEe-----------cCcCceEEeccc---------------ccC
Confidence 46899999986522 122333 444444443 445888887654 247
Q ss_pred CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHH---hcCCCcccEEEE-eeecCCCCCeEEEEEEeCCCC
Q psy4966 72 GWLHTGDLAYRLPDGTHFII--------------SPCELESIF---RQHPDVEDVAVI-GIPHDVFGELPAAVVVPKPNS 133 (149)
Q Consensus 72 ~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l---~~~~~V~~~~v~-~~~~~~~g~~~~a~v~~~~~~ 133 (149)
+||+|||++++|++|+ +|+ +|.|||++| ..||+|.+++|+ +.+++.+|+.++|+|+....
T Consensus 228 g~~~TGDlg~~d~~g~-~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~- 305 (358)
T 4gs5_A 228 QTVQTNDLVEIHGNAF-QWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP- 305 (358)
T ss_dssp CCEEEEEEEEECSSEE-EEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-
T ss_pred cceecCCccccccCce-EEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-
Confidence 8999999999999884 444 999999877 458999998876 67889999999998876543
Q ss_pred CCCHHHHHHHhhcc
Q psy4966 134 SVTAEEVKQFVEFP 147 (149)
Q Consensus 134 ~~~~~~l~~~l~~~ 147 (149)
..+.++|+++|++.
T Consensus 306 ~~~~~~l~~~l~~~ 319 (358)
T 4gs5_A 306 EALTERLTAEIRSR 319 (358)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhh
Confidence 34557788888764
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=98.59 E-value=4.4e-08 Score=74.21 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=51.4
Q ss_pred CeeeeccCCccccc---cc-CcCccc------cCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCC
Q psy4966 1 MFLVVGLVGKSKQK---AT-LTGKHF------QEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDD 70 (149)
Q Consensus 1 ~~~~~g~~e~~~~~---~~-~~g~~p------~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~ 70 (149)
++..||+||.+... .. ++|+ | +|++.++|+|+++|+++|+|+.|||+|++.. ...+
T Consensus 261 v~~~YG~TE~~~~~~~~~~~~~G~-~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~-----------~~~~-- 326 (369)
T 3hgu_A 261 FSASYGSTSALGVSRSLLITSESQ-QVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLS-----------PWAF-- 326 (369)
T ss_dssp EEEEEEEGGGTEEEEECCBCTTCS-SCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEE-----------TTEE--
T ss_pred EEcccCchhhhcceeccccccCCC-cccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcC-----------cccc--
Confidence 36789999986432 22 3677 8 9999999999658999999999999998743 0111
Q ss_pred CCeEEcCceEEEcC
Q psy4966 71 DGWLHTGDLAYRLP 84 (149)
Q Consensus 71 ~~~~~TGD~~~~~~ 84 (149)
--.|+|||++.+.+
T Consensus 327 l~ry~tgD~~~~~~ 340 (369)
T 3hgu_A 327 YPRVAERDTAIRLP 340 (369)
T ss_dssp EEEEEEEEEEEEEC
T ss_pred cccccCCceEEEec
Confidence 12477888877753
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.53 E-value=1.4e-07 Score=59.74 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=43.4
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHH
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV 140 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l 140 (149)
+|.|||++|.+||+|.++++++++++.+++.+.++|++.++...+...+
T Consensus 15 ~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~ 63 (109)
T 3lax_A 15 FPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRL 63 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHH
T ss_pred CHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchh
Confidence 9999999999999999999999999999999999999988766665433
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.11 E-value=5.2e-06 Score=52.50 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=36.8
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~ 133 (149)
+|.|||++|.+||+|.++++++++++.+++.+++++++ ++.
T Consensus 15 ~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~ 55 (109)
T 3gxs_A 15 FPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL 55 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT
T ss_pred CHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc
Confidence 89999999999999999999988888778999999998 553
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=90.36 E-value=1 Score=36.31 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=36.8
Q ss_pred ccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcC--C--CeEEEE--------------ChHHHHH
Q psy4966 37 VQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP--D--GTHFII--------------SPCELES 98 (149)
Q Consensus 37 ~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~--~--G~~~i~--------------~~~eIE~ 98 (149)
.++..|+.++|++.... |.| -|++||+.++.. + ..+.|. +..+||+
T Consensus 379 ~eVe~G~~YelViTt~~--GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~ 442 (581)
T 4eql_A 379 EDVKLGCTYEPVVTNFA--GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFK 442 (581)
T ss_dssp GGCCTTCEEEEEEECSS--SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHH
T ss_pred HHcCCCceEEEEEeecc--cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHH
Confidence 46678999999996553 111 289999999975 3 345554 8999999
Q ss_pred HHhcC
Q psy4966 99 IFRQH 103 (149)
Q Consensus 99 ~l~~~ 103 (149)
+|.+.
T Consensus 443 al~~a 447 (581)
T 4eql_A 443 AVSQA 447 (581)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99754
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=90.24 E-value=2.1 Score=34.72 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=36.7
Q ss_pred ccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcC----CCeEEEE--------------ChHHHHH
Q psy4966 37 VQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP----DGTHFII--------------SPCELES 98 (149)
Q Consensus 37 ~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~----~G~~~i~--------------~~~eIE~ 98 (149)
.+++.|+.+||++.... |.| -|++||+.++.. ...|.|. +..+||+
T Consensus 391 ~eVe~G~~YelViTt~~--GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~ 454 (609)
T 4b2g_A 391 AHVEVGKEYELVITTYA--GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQK 454 (609)
T ss_dssp GGCCTTCEEEEEEECTT--SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred hHcCCCCeEEEehhhhh--hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHH
Confidence 46789999999995443 322 189999999974 2455554 8999999
Q ss_pred HHhc
Q psy4966 99 IFRQ 102 (149)
Q Consensus 99 ~l~~ 102 (149)
+|..
T Consensus 455 av~~ 458 (609)
T 4b2g_A 455 AVDN 458 (609)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9863
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=82.64 E-value=6.6 Score=31.67 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=35.8
Q ss_pred ccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcCC----CeEEEE--------------ChHHHHH
Q psy4966 37 VQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD----GTHFII--------------SPCELES 98 (149)
Q Consensus 37 ~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~----G~~~i~--------------~~~eIE~ 98 (149)
.+++.|+.++|++.... |.| -|++||+.++..- ..+.|. +..+||+
T Consensus 386 ~eve~G~~YelviTt~~--GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~ 449 (581)
T 4epl_A 386 TQVKIGEEYEVVITNYA--GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQL 449 (581)
T ss_dssp GGCCTTCEEEEEEESTT--SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred HHcCCCCeEEEEEeecc--cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHH
Confidence 57788999999996543 111 2899999999742 234454 8899999
Q ss_pred HHhc
Q psy4966 99 IFRQ 102 (149)
Q Consensus 99 ~l~~ 102 (149)
++..
T Consensus 450 al~~ 453 (581)
T 4epl_A 450 SVES 453 (581)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 42
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=69.54 E-value=13 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~ 133 (149)
-+.|||+.+.+||+ .-+-++|. |+....+++.|++-+++.
T Consensus 69 Vl~Ele~C~k~~p~-~yVRliGf-D~~~q~q~~sfIv~RP~~ 108 (118)
T 3zxw_B 69 VLNEVQQCRSEYPN-CFIRVVAF-DNIKQCQVMSFIVYKPNQ 108 (118)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEE-ETTTTEEEEEEEEECC--
T ss_pred HHHHHHHHHHHCCC-ceEEEEEE-eCCcCEEEEEEEEECCCC
Confidence 46899999999998 66777877 455567788999988754
No 43
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=66.23 E-value=20 Score=22.92 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=31.3
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~ 133 (149)
-+.|||+.+.++|+ .-+-+++. |+..+.+.+.||+-++..
T Consensus 82 Vl~El~~C~k~~P~-~YVRligf-Dn~~q~q~~sfIv~RP~~ 121 (128)
T 1wdd_S 82 VLKELEEAKKAYPD-AFVRIIGF-DNVRQVQLISFIAYKPPG 121 (128)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEE-ETTTTEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHCCC-CeEEEEEE-eCCCCEEEEEEEEECCCC
Confidence 47899999999997 56667776 555567888999988764
No 44
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=65.58 E-value=16 Score=20.71 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=30.4
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~ 145 (149)
...++++.|.++|.|.+|..+..... ..+-+..+ |.+++.+++.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~~-----d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVETD-----TLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEES-----SHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEEC-----CHHHHHHHHH
Confidence 45789999999999999988654221 34444443 5577777765
No 45
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=60.10 E-value=20 Score=20.02 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=29.1
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~ 145 (149)
...++.+.|.++|.|.+|..+..... +.+-+.. .+.+++.+++.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~-----~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA-----DSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC-----SSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE-----CCHHHHHHHHH
Confidence 45789999999999999987653221 3444443 35566666664
No 46
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=58.81 E-value=26 Score=22.73 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=29.9
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~ 133 (149)
-+.|||+.+.++|+ .-+-++|. |+....+.+.|++-++..
T Consensus 89 Vl~El~~C~k~~P~-~YVRligf-Dn~~q~q~~sfIV~RP~~ 128 (140)
T 1gk8_I 89 VLREIVACTKAFPD-AYVRLVAF-DNQKQVQIMGFLVQRPKT 128 (140)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEE-ETTTTEEEEEEEEECC--
T ss_pred HHHHHHHHHHHCCC-CeEEEEEE-eCCCCEEEEEEEeECCCC
Confidence 57899999999997 56667776 555567888999988754
No 47
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=58.32 E-value=30 Score=21.38 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=29.1
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~ 132 (149)
-+.|||+.+.++|+ .-+-++|... ..-.+.+.+++-+++
T Consensus 70 Vl~Ele~C~k~~p~-~yVRligfD~-~~q~q~~sfIv~RP~ 108 (109)
T 1rbl_M 70 VLDEVRECRSEYGD-CYIRVAGFDN-IKECQTSSFIVHRPG 108 (109)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEEET-TTTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHCCC-CeEEEEEEeC-CCcEEEEEEEeeCCC
Confidence 57899999999997 5666777744 445667788887764
No 48
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=57.69 E-value=19 Score=20.85 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=29.4
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~ 145 (149)
...++++.|.++|.|.+|..+..... ..+.+..+ |.+++.+++.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~~-----d~~~l~~~l~ 57 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSVTGPYD-----LVALVRLK-----DVEELDDVVT 57 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEES-----SGGGHHHHCC
T ss_pred CHHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEEC-----CHHHHHHHHH
Confidence 45789999999999999988754222 44444443 3455666653
No 49
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=56.27 E-value=30 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=22.1
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFG 120 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g 120 (149)
-..+|+++|.++++|.++-|--..++.|.
T Consensus 61 l~~~i~~al~~l~gv~~v~V~l~~~p~W~ 89 (103)
T 1uwd_A 61 ILSDAEEAIKKIEGVNNVEVELTFDPPWT 89 (103)
T ss_dssp HHHHHHHHHHTSSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhCCCcceEEEEEecCCCCC
Confidence 45688999999999998877655566654
No 50
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=55.16 E-value=35 Score=21.13 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=28.1
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~ 131 (149)
-+.|||+.+.++|+ .-+-++|... ..-.+.+.+++-++
T Consensus 72 Vl~El~~C~k~~p~-~yVRligfD~-~~q~q~~sfIv~RP 109 (110)
T 1svd_M 72 VLAEIEACRSAYPT-HQVKLVAYDN-YAQSLGLAFVVYRG 109 (110)
T ss_dssp HHHHHHHHHHHSTT-SEEEEEEEET-TTTEEEEEEEEECC
T ss_pred HHHHHHHHHHHCCC-CeEEEEEEeC-CCCEEEEEEEeeCC
Confidence 57899999999997 5666777744 44556778888765
No 51
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=47.38 E-value=45 Score=20.15 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=22.9
Q ss_pred ChHHHHHHH-hcCCCcccEEEEeeecCCCC
Q psy4966 92 SPCELESIF-RQHPDVEDVAVIGIPHDVFG 120 (149)
Q Consensus 92 ~~~eIE~~l-~~~~~V~~~~v~~~~~~~~g 120 (149)
-..+|+++| .++++|..+-|--.-++.|.
T Consensus 63 i~~~i~~al~~~l~Gv~~V~V~l~~~p~W~ 92 (108)
T 3lno_A 63 IVSDVKKVLSTNVPEVNEIEVNVVWNPPWS 92 (108)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECCSSCCC
T ss_pred HHHHHHHHHHHhCCCCceEEEEEEecCCCC
Confidence 356899999 89999999887766676664
No 52
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=47.23 E-value=20 Score=25.75 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=32.4
Q ss_pred CeEEc-CceEEEcCCCeEEEE-------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 72 GWLHT-GDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 72 ~~~~T-GD~~~~~~~G~~~i~-------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
.|+|. +|-..+.++|++.+- .|.+++..|..+|+|-+.-++.
T Consensus 183 ~~lR~~~~gp~vTDnGN~IlD~~f~~i~dp~~l~~~l~~i~GVVe~GLF~ 232 (255)
T 3hhe_A 183 ITLRMNGDDPFKTDGGHFIFDAFWGRILQPKLLSEALLAIPGVVEHGLFL 232 (255)
T ss_dssp EEECEETTEECCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEEeeCCCCcEEcCCCCEEEEeeCCCcCCHHHHHHHHhcCCCEeeecccc
Confidence 46776 555566677877764 8999999999999998877664
No 53
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=42.93 E-value=65 Score=20.76 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCC-eEEEEEEeCCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGE-LPAAVVVPKPNS 133 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~-~~~a~v~~~~~~ 133 (149)
-+.|||+.+.++|+ .-+-+++......-+ +.+.||+-++..
T Consensus 64 Vl~Ele~C~k~~p~-~YVRliGfDn~~~~qs~~~sfIV~RP~~ 105 (138)
T 4f0h_B 64 VLFEINACRKAKSN-FYIKVVGFSSERGIESTIISFIVNRPKH 105 (138)
T ss_dssp HHHHHHHHHHHTTT-SEEEEEEEECCTTTCEEEEEEEEECCSC
T ss_pred HHHHHHHHHHHCCC-CeEEEEEEeCCCceEEEEEEEEEeCCCC
Confidence 47899999999998 566677775444323 688999988754
No 54
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=40.51 E-value=58 Score=19.48 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966 94 CELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132 (149)
Q Consensus 94 ~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~ 132 (149)
.+|++.+.+.|+|.++-=+-+........+-+-+++.+.
T Consensus 13 ~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~ 51 (107)
T 2zzt_A 13 DDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGK 51 (107)
T ss_dssp HHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTT
T ss_pred HHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCC
Confidence 568889999999988775555443222334455666544
No 55
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=37.05 E-value=83 Score=20.26 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=28.4
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCC--CeEEEEEEeCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFG--ELPAAVVVPKPN 132 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g--~~~~a~v~~~~~ 132 (149)
-+.|||+.+.++|+ .-+-++|... ..+ .+++.|++-++.
T Consensus 64 Vl~Ele~C~k~~p~-~YVRliGfD~-~~~~qs~~~sfIV~RP~ 104 (138)
T 1bwv_S 64 VLFEINACRKARSN-FYIKVVGFSS-VRGIESTIISFIVNRPK 104 (138)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEEEC-CTTTCEEEEEEEEECCS
T ss_pred HHHHHHHHHHHCCC-CeEEEEEEeC-CCceEEEEEEEEEECCC
Confidence 57899999999997 5666777744 444 347888888764
No 56
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=36.96 E-value=49 Score=17.56 Aligned_cols=47 Identities=26% Similarity=0.241 Sum_probs=30.5
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|.++++|..+.+-.... .+.|..++. ..+.+.|.+.+++
T Consensus 16 C~~~ie~~l~~~~gv~~~~v~~~~~-------~~~v~~~~~-~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 16 CSNSVEAALMNVNGVFKASVALLQN-------RADVVFDPN-LVKEEDIKEEIED 62 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEGGGT-------EEEEEECTT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEEecCC-------EEEEEECCC-CCCHHHHHHHHHH
Confidence 4678999999999998876632211 224444432 4577778777654
No 57
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=35.47 E-value=63 Score=18.41 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCeEEEE-------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 84 PDGTHFII-------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 84 ~~G~~~i~-------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
.+|++++. ...|+|..+.-.+.|-...++....+.. -.+ .+++++ .++.+++.+.+.+
T Consensus 3 ~~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~-YE~--m~Il~P--~l~ee~~~~~vek 67 (77)
T 3zzp_A 3 PQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGR-YEV--NIVLNP--NLDQSQLQNEKEI 67 (77)
T ss_dssp -CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTE-EEE--EEEECT--TCCHHHHHHHHHH
T ss_pred ceEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCc-eEE--EEEECC--CCCHHHHHHHHHH
Confidence 45666555 6789999999999998888876544432 122 334454 3566665555443
No 58
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=33.26 E-value=34 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=29.5
Q ss_pred EEcCceEEEcCCCeEEEE-------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 74 LHTGDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 74 ~~TGD~~~~~~~G~~~i~-------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
+|.| .+.++|++.+- .|.++|+.|.++|+|-+.-++.
T Consensus 157 ~R~g---~vTdnGn~IlD~~~~~i~~p~~l~~~l~~i~GVve~GlF~ 200 (219)
T 1m0s_A 157 YREG---VVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGIFA 200 (219)
T ss_dssp ECTT---CCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eeCc---eEcCCCCEEEEecCCCCCCHHHHHHHHhcCCCeeeeccEe
Confidence 5654 66677877664 7999999999999998887775
No 59
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=32.86 E-value=34 Score=23.77 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=29.4
Q ss_pred EEcCceEEEcCCCeEEEE-------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 74 LHTGDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 74 ~~TGD~~~~~~~G~~~i~-------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
+|.| .+.++|++.+- .|.++|+.|.++|+|-+.-++.
T Consensus 156 ~R~g---~vTdnGn~IlD~~~~~i~~p~~l~~~l~~i~GVve~GlF~ 199 (219)
T 1o8b_A 156 YRQG---VVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFA 199 (219)
T ss_dssp ECTT---CCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eeCc---eEeCCCCEEEEeeCCCCCCHHHHHHHHhcCCCcceeeeEe
Confidence 5554 66677877654 7999999999999998887775
No 60
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=31.60 E-value=98 Score=19.44 Aligned_cols=43 Identities=5% Similarity=-0.100 Sum_probs=29.0
Q ss_pred hHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966 93 PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145 (149)
Q Consensus 93 ~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~ 145 (149)
..++.+.|.++|.|.+|..+..+ .-+.+.+..+ +.+++.+++.
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~-----~d~~~~v~~~-----d~~~l~~~l~ 124 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGH-----YSIFIKVMCR-----SIDALQHVLI 124 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSS-----CSEEEEEEES-----CHHHHHHHHH
T ss_pred HHHHHHHHhCCcCeEEEEEEecc-----cCEEEEEEEC-----CHHHHHHHHH
Confidence 46889999999999999987431 1244444443 5567777663
No 61
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=31.43 E-value=51 Score=19.60 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=22.7
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFG 120 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g 120 (149)
-..+|+++|.++++|.++-|--..++.|.
T Consensus 60 l~~~i~~al~~l~gv~~V~V~l~~~p~W~ 88 (103)
T 3cq1_A 60 LGEAVRQALSRLPGVEEVEVEVTFEPPWT 88 (103)
T ss_dssp HHHHHHHHHHTSTTCCEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhCCCceeEEEEEecCCCCC
Confidence 45789999999999998877666666664
No 62
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.43 E-value=92 Score=19.97 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=28.2
Q ss_pred hHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 93 PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 93 ~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
..++.+.|.++|.|.+|..+.. . .-+.+.+..+ +.+++.+++.+
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG---~--~D~~l~v~~~-----d~~~l~~~l~~ 122 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSG---D--VDYLLRVVVP-----DIAAYDAFYKR 122 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCS---S--CSEEEEEEES-----SHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeeecCC---C--CCEEEEEEEC-----CHHHHHHHHHH
Confidence 4688889999999999987532 1 1244455443 45666665543
No 63
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=31.32 E-value=98 Score=19.44 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.8
Q ss_pred ChHHHHHHHhcCCCcccEEEEe
Q psy4966 92 SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
...++.+.|.++|.|.+|..+.
T Consensus 79 ~~~~~~~~l~~~p~V~~~~~~t 100 (151)
T 2cyy_A 79 KYSEVASNLAKYPEIVEVYETT 100 (151)
T ss_dssp CHHHHHHHHHTCTTEEEEEECS
T ss_pred cHHHHHHHHhcCCCeeEeeEec
Confidence 5688999999999999998764
No 64
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.91 E-value=1e+02 Score=19.24 Aligned_cols=22 Identities=14% Similarity=-0.109 Sum_probs=18.2
Q ss_pred ChHHHHHHHhcCCCcccEEEEe
Q psy4966 92 SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
...++.+.|.++|.|.+|..+.
T Consensus 81 ~~~~~~~~l~~~peV~~~~~vt 102 (151)
T 2dbb_A 81 DADKVISEISDIEYVKSVEKGV 102 (151)
T ss_dssp HHHHHHHHHTTCTTEEEEEEEE
T ss_pred CHHHHHHHHHcCCCeEEEeEec
Confidence 4567888999999999998774
No 65
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=28.84 E-value=1.6e+02 Score=21.72 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE
Q psy4966 25 HNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII 91 (149)
Q Consensus 25 ~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~ 91 (149)
.+..+|+| .+|++++ |..=+||-.. ..|.|.........|..-|.+.| |++|.++|.
T Consensus 138 ~v~G~V~D-~~G~Pv~-gA~VeiWqad--a~G~Y~~~~~~~~~~~~rGr~~T------D~~G~y~F~ 194 (312)
T 2xsu_A 138 IIEGTVTD-TEGNIIE-GAKVEVWHAN--SLGNYSFFDKSQSDFNLRRTILT------DVNGKYVAL 194 (312)
T ss_dssp EEEEEEEE-TTSCBCT-TCEEEEECCC--TTSCCBTTBTTSCTTTTEEEEEC------CTTSEEEEE
T ss_pred EEEEEEEC-CCCCCCC-CCEEEEEecC--CCCcccCCCCCCCCCCCeeEEEe------CCCceEEEE
Confidence 34566777 6677765 3333444322 34444332222222211223333 678888876
No 66
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=28.57 E-value=1.6e+02 Score=20.95 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE
Q psy4966 26 NAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII 91 (149)
Q Consensus 26 ~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~ 91 (149)
+..+|+| .+|++++ |..=|||-.. ..|.|+........|..-|.+.| |++|.+.|.
T Consensus 105 l~G~V~D-~~G~Pv~-~A~VeiWqad--a~G~Y~~~~~~~~~~~~rGr~~T------d~~G~y~F~ 160 (254)
T 2boy_A 105 FRGEVVD-QEGAPLA-DVLLDMWQAD--AAGEYSFINPTLPDYLFRGKIRT------DENGRFTLR 160 (254)
T ss_dssp EEEEEEC-TTSCBCC-SCEEEEECCC--TTSCCBTTBTTSCTTTTEEEEEC------CTTSEEEEE
T ss_pred EEEEEEC-CCCCCCC-CCEEEEEcCC--CCCccCCcCCCCCCCCCeeEEEe------CCCceEEEE
Confidence 4556777 6677765 3333555422 33444332222222212223333 778888887
No 67
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=28.03 E-value=47 Score=23.24 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.9
Q ss_pred EEcCceEEEcCCCeEEEE-------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 74 LHTGDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 74 ~~TGD~~~~~~~G~~~i~-------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
+|.+ .+.++|++.+- .|.+++..|.++|+|-+.-++.
T Consensus 162 lR~~---~vTDnGn~IlD~~~~~i~dp~~l~~~l~~i~GVVe~GlF~ 205 (224)
T 3kwm_A 162 YREQ---TITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFA 205 (224)
T ss_dssp ECTT---CCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EecC---cCccCCCEEEEcCCCCCCCHHHHHHHHcCCCCEeeeCccc
Confidence 5554 55667777664 8999999999999998887764
No 68
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=27.96 E-value=43 Score=17.43 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=30.2
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|..+++|.++.+-. ..+ . +.|.. + ...+.+.|.+.+++
T Consensus 16 C~~~i~~~l~~~~gv~~~~v~~----~~~-~--~~v~~-~-~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 16 CASSIERAIAKVPGVQSCQVNF----ALE-Q--AVVSY-H-GETTPQILTDAVER 61 (69)
T ss_dssp HHHHHHHHHHTSTTEEEEEEET----TTT-E--EEEEE-C-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEEe----cCC-E--EEEEE-C-CCCCHHHHHHHHHH
Confidence 4678999999999998876632 111 1 23333 2 35677888877764
No 69
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=27.06 E-value=60 Score=22.70 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=30.4
Q ss_pred EEc-CceEEEcCCCeEEEE-------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 74 LHT-GDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 74 ~~T-GD~~~~~~~G~~~i~-------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
+|. +|-..+.++|++.+- .|.+++..|.++|+|-+.-++.
T Consensus 157 lR~~~~~p~vTDnGn~IlD~~f~~i~~p~~l~~~l~~i~GVVe~GlF~ 204 (225)
T 3l7o_A 157 FREYDGVRFVTDMKNFIIDLDLGSIPDPIAFGNMLDHQVGVVEHGLFN 204 (225)
T ss_dssp ECEETTEECCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEEcCCCcEEcCCCCEEEEecCCCCCCHHHHHHHHhcCCCeeeeeeec
Confidence 444 444566677877664 8999999999999998887764
No 70
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=25.83 E-value=1.2e+02 Score=18.78 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=29.0
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
...++.+.+.++|.|.+|..+..+ .-..+.+..+ +.+++.+++.+
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~tG~-----~d~~~~v~~~-----~~~~l~~~~~~ 121 (144)
T 2cfx_A 77 DYERFKSYIQTLPNIEFCYRIAGA-----ACYMLKINAE-----SLEAVEDFINK 121 (144)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEESS-----SSEEEEEEES-----SHHHHHHHHHH
T ss_pred cHHHHHHHHhcChhhheeeeeeCC-----CCEEEEEEEC-----CHHHHHHHHHH
Confidence 467888999999999999876521 1244444443 44556655543
No 71
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=25.75 E-value=49 Score=23.23 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=31.0
Q ss_pred eEEcCce---EEEcCCCeEEEE------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 73 WLHTGDL---AYRLPDGTHFII------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 73 ~~~TGD~---~~~~~~G~~~i~------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
.+|.|+- -.+..+|++.+- .|.++|+.|.++|+|-+.-++.
T Consensus 159 ~~R~~~~~~gp~vTDnGN~IlD~~~~i~dp~~l~~~L~~ipGVVe~GlF~ 208 (226)
T 3ixq_A 159 VIRLGDRKRGPVITDNGNMIIDVFMNIDDAIELEKEINNIPGVVENGIFT 208 (226)
T ss_dssp EECBCSSSSSBCBCTTSCEEEEEECCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eEEeeccCCCceEecCCCEEEEecCCCCCHHHHHHHHhCCCCEEeeCccc
Confidence 5666643 245567776553 8999999999999999888875
No 72
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=25.61 E-value=1.9e+02 Score=20.71 Aligned_cols=56 Identities=14% Similarity=-0.037 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE
Q psy4966 26 NAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII 91 (149)
Q Consensus 26 ~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~ 91 (149)
+..+|+| .+|++++ |..=|||-.. ..|.|+........+..-|.+.| |++|.+.|.
T Consensus 102 v~G~V~D-~~G~Pv~-gA~VeiWqad--~~G~Y~~~~~~~~~~~~RG~~~T------D~~G~y~F~ 157 (260)
T 3th1_A 102 IRGTVRS-DTGELLA-GAVIDVWHST--PDGLYSGIHDNIPVDYYRGKLVT------DSQGNYRVR 157 (260)
T ss_dssp EEEEEEE-TTSCBCS-SCEEEEEECC--TTSCCTTTSTTCCTTBTEEEEEC------CTTSEEEEE
T ss_pred EEEEEEC-CCCCCcC-CcEEEEEecC--CCCcccCcCCCCCCCCCceEEEe------CCCCEEEEE
Confidence 4557788 7787775 3444666533 33444332222222211233444 678888887
No 73
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=25.48 E-value=82 Score=20.92 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=27.6
Q ss_pred ChHHHHHHHhcCCCcccEEEEee-ecCCCCCeEE--EEEEeCCCCCCCHH
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGI-PHDVFGELPA--AVVVPKPNSSVTAE 138 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~-~~~~~g~~~~--a~v~~~~~~~~~~~ 138 (149)
--.|+++.|.++++|..|-|.-. |... .+.+- .++.++++..++..
T Consensus 91 legELartI~~i~~V~~ARVhl~lP~~~-~~~~sASV~l~~~~g~~l~~~ 139 (171)
T 1yj7_A 91 KEQDIERLLSKIPGVIDCSVSLNVNNNE-SQPSSAAVLVISSPEVNLAPS 139 (171)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEEEC--------CEEEEEEEECTTCCCGGG
T ss_pred HHHHHHHHHHcCCCeeEEEEEEECCCCC-CCCceEEEEEEeCCCCCCcHh
Confidence 35689999999999999987544 3322 22233 34445667666654
No 74
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=25.37 E-value=61 Score=18.58 Aligned_cols=40 Identities=5% Similarity=-0.004 Sum_probs=24.0
Q ss_pred hHHHHHHHhcC--CCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966 93 PCELESIFRQH--PDVEDVAVIGIPHDVFGELPAAVVVPKPN 132 (149)
Q Consensus 93 ~~eIE~~l~~~--~~V~~~~v~~~~~~~~g~~~~a~v~~~~~ 132 (149)
..+|++.+.++ |+|.++.=+-...-.....+-+-++..+.
T Consensus 12 ~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~ 53 (94)
T 3byp_A 12 VERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGD 53 (94)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred HHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCC
Confidence 46788899888 99987765544332211233455566544
No 75
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.14 E-value=1e+02 Score=20.14 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=28.1
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHh
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l 144 (149)
...++.+.|.++|.|.+|..+.. ..-+.+.+..+ +.+++.+++
T Consensus 99 ~~~~v~~~l~~~peV~~~~~vtG-----~~d~l~~v~~~-----d~~~l~~~l 141 (171)
T 2e1c_A 99 KYSEVASNLAKYPEIVEVYETTG-----DYDMVVKIRTK-----NSEELNNFL 141 (171)
T ss_dssp CHHHHHHHHHTSTTEEEEEECSS-----SSSEEEEEEES-----SHHHHHHHH
T ss_pred hHHHHHHHHhcCcCeEEEEEeeC-----CCCEEEEEEEC-----CHHHHHHHH
Confidence 56889999999999999987642 11244444443 445555554
No 76
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=24.32 E-value=73 Score=22.16 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=30.3
Q ss_pred eEEc-CceEEEcCCCeEEEE-------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 73 WLHT-GDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 73 ~~~T-GD~~~~~~~G~~~i~-------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
-+|. ++-..+.++|++.+- .|.+++..|.++|+|-+.-++.
T Consensus 160 ~~R~~~~~~~vTdnGn~ilD~~~~~i~~~~~l~~~l~~i~GVve~GlF~ 208 (227)
T 1uj6_A 160 ELRMDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFV 208 (227)
T ss_dssp EECEETTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEEecCCCCEEcCCCCEEEEeeCCCCCCHHHHHHHHhCCCCcceeccEe
Confidence 3554 333366677877664 7999999999999998887764
No 77
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Probab=24.17 E-value=2.3e+02 Score=21.21 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=26.4
Q ss_pred EEcCCCeEEEE-------------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 81 YRLPDGTHFII-------------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 81 ~~~~~G~~~i~-------------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
..|.+|.+... +-.+||+.|...-++..++.+.
T Consensus 161 ~~dG~GTlltT~~clLn~nRNp~ls~~~ie~~L~~~LG~~~viwL~ 206 (355)
T 1xkn_A 161 DVNGAGLLLTTTACLLNPNRNPSLGKAEIEAQLRRYLGIEKVLWLG 206 (355)
T ss_dssp EECSSSEEEEEHHHHTCTTTCTTCCHHHHHHHHHHHHCCSEEEEEC
T ss_pred EECCCceEEEEeeeecCCCCCCCCCHHHHHHHHHHHcCCcEEEEeC
Confidence 45666766665 6889999999877999998887
No 78
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=23.91 E-value=2.4e+02 Score=21.41 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=26.3
Q ss_pred EEcCCCeEEEE-------------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 81 YRLPDGTHFII-------------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 81 ~~~~~G~~~i~-------------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
..|.+|.+... +-.+||+.|...-++..++.+.
T Consensus 162 ~~DG~GTlltTe~clLn~nRNP~lsk~eiE~~Lk~~LGv~kvIWL~ 207 (389)
T 2jer_A 162 HVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLG 207 (389)
T ss_dssp EECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEEC
T ss_pred EECCCceEEEEeeeecCCCCCCCcCHHHHHHHHHHHcCCCEEEEcC
Confidence 45666766665 6889999999877999998886
No 79
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=23.47 E-value=87 Score=20.20 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=26.4
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCC--eEEEEEEeCC
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKP 131 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~--~~~a~v~~~~ 131 (149)
-+.|||+.+.++|+ .-+-+++. |+..+- +++.|++-++
T Consensus 64 Vl~Ele~C~k~~p~-~YVRliGf-D~~~~~qs~~~sfIV~RP 103 (139)
T 1bxn_I 64 ILMEINNARNTFPN-HYIRVTAF-DSTHTVESVVMSFIVNRP 103 (139)
T ss_dssp HHHHHHHHHHHCSS-SEEEEEEE-CTTTCCEEEEEECCCCGG
T ss_pred HHHHHHHHHHHCCC-CeEEEEEE-eCCCceEEEEEEEEEECC
Confidence 57899999999997 55667766 444442 3677777654
No 80
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=23.12 E-value=56 Score=16.68 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=28.7
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|..+++|.++.+-. .. .. +.+...+. .+.+.|.+.+.+
T Consensus 14 C~~~i~~~l~~~~gv~~~~v~~----~~-~~--~~v~~~~~--~~~~~i~~~i~~ 59 (69)
T 2kt2_A 14 CAAHVKEALEKVPGVQSALVSY----PK-GT--AQLAIVPG--TSPDALTAAVAG 59 (69)
T ss_dssp HHHHHHHHHHHSTTEEEEEEET----TT-TE--EEEEECTT--SCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCeeEEEEEc----cC-CE--EEEEECCC--CCHHHHHHHHHH
Confidence 4567999999999998776531 11 11 23344433 466777777654
No 81
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=22.34 E-value=63 Score=17.09 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=27.8
Q ss_pred ChHHHHHHHhcCC-CcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHP-DVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~-~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|.+++ +|.++.+-. ..+. + .|.. ..+.+.+.+.+++
T Consensus 18 C~~~ie~~l~~~~~GV~~~~v~~----~~~~-~--~v~~----~~~~~~i~~~i~~ 62 (73)
T 1cc8_A 18 CSGAVNKVLTKLEPDVSKIDISL----EKQL-V--DVYT----TLPYDFILEKIKK 62 (73)
T ss_dssp HHHHHHHHHHTTTTSEEEEEEET----TTTE-E--EEEE----SSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCceEEEEEC----CCCE-E--EEEE----eCCHHHHHHHHHH
Confidence 3567999999999 998876631 1111 1 2222 3567778777764
No 82
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=22.13 E-value=2.4e+02 Score=20.73 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=34.0
Q ss_pred ceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE-------------C
Q psy4966 26 NAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII-------------S 92 (149)
Q Consensus 26 ~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~-------------~ 92 (149)
+..+|+| .+|++++ |..=|||-.. ..|.|.........|..-|.+.| |++|.+.|. .
T Consensus 135 v~G~V~D-~~G~Pv~-gA~VeiWqad--a~G~Y~~~~~~~~~f~~rGr~~T------D~~G~y~F~TI~Pg~Y~~p~dGp 204 (311)
T 2azq_A 135 LQGQVFD-ANGKPLA-GATVDLWHAN--TQGTYSYFDSTQSEFNLRRRIIT------DAEGRYRARSIVPSGYGCDPQGP 204 (311)
T ss_dssp EEEEEEC-SSSCBCT-TCEEEEECCC--TTSCCBTTBTTSCTTTTEEEEEC------CTTCEEEEEEECCCCEECCTTSH
T ss_pred EEEEEEc-CCCCCCC-CceeEEEecC--CCCccCCCCCCCCCCCCeeEEEe------CCCceEEEEEEcCCCcCCCCCCc
Confidence 4455667 6666665 3333555432 33433322111122222233334 678888887 1
Q ss_pred hHHHHHHHhcCCC
Q psy4966 93 PCELESIFRQHPD 105 (149)
Q Consensus 93 ~~eIE~~l~~~~~ 105 (149)
..++=+.+-.|++
T Consensus 205 ~g~lL~~~grh~~ 217 (311)
T 2azq_A 205 TQECLDLLGRHGQ 217 (311)
T ss_dssp HHHHHHHHTCCCE
T ss_pred HHHHHHhhhccCC
Confidence 2445556666664
No 83
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=21.74 E-value=67 Score=16.13 Aligned_cols=47 Identities=23% Similarity=0.146 Sum_probs=28.7
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|..+++|..+.+-. ..+. +.+...+ ...+.+.+.+.+.+
T Consensus 14 C~~~i~~~l~~~~gv~~~~v~~----~~~~---~~v~~~~-~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 14 CVARIEEAVGRISGVKKVKVQL----KKEK---AVVKFDE-ANVQATEICQAINE 60 (68)
T ss_dssp HHHHHHHHHHTSTTEEEEEEET----TTTE---EEEEECT-TTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCeEEEEEEe----cCCE---EEEEECC-CCCCHHHHHHHHHH
Confidence 3567999999999998776531 1111 2333443 24566777776654
No 84
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=21.46 E-value=68 Score=16.29 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=26.4
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~ 145 (149)
....||+.|..+++|..+.+-. ..+. +.+...+. .+.+.+.+.+.
T Consensus 17 C~~~i~~~l~~~~gv~~~~v~~----~~~~---~~v~~~~~--~~~~~i~~~i~ 61 (71)
T 2xmw_A 17 CASSIERAIAKVPGVQSCQVNF----ALEQ---AVVSYHGE--TTPQILTDAVE 61 (71)
T ss_dssp HHHHHHHHHHTSTTEEEEEEET----TTTE---EEEEEC-----CHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEEc----cCCE---EEEEECCC--CCHHHHHHHHH
Confidence 4567999999999998776532 1111 23333432 56666766654
No 85
>4dcz_A DNAJ-like protein Mg200; dimer, intra-domain symmetry AXIS, unknown function; 2.90A {Mycoplasma genitalium}
Probab=21.42 E-value=92 Score=18.07 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=11.8
Q ss_pred CCeEEcCceEEEcCCCeEEE
Q psy4966 71 DGWLHTGDLAYRLPDGTHFI 90 (149)
Q Consensus 71 ~~~~~TGD~~~~~~~G~~~i 90 (149)
+.|..+ |++|++|...-
T Consensus 62 GEWVW~---GYFDE~g~WV~ 78 (92)
T 4dcz_A 62 GDWSWK---GYFDEQGKWVW 78 (92)
T ss_dssp SCEEES---EEECTTSBEEE
T ss_pred CCEEEE---eEecCCCCEee
Confidence 347766 78988886554
No 86
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=21.42 E-value=64 Score=16.11 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=27.7
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|..+++|..+.+- -..+. +.+...+. .+.+.|.+.+.+
T Consensus 15 C~~~i~~~l~~~~gv~~~~v~----~~~~~---~~v~~~~~--~~~~~i~~~i~~ 60 (66)
T 1yg0_A 15 CVDKIEKFVGEIEGVSFIDVS----VEKKS---VVVEFDAP--ATQDLIKEALLD 60 (66)
T ss_dssp HHHHHHHHHTTSSSEEEEEEE----TTTTE---EEEEECTT--CCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEE----cCCCE---EEEEECCC--CCHHHHHHHHHH
Confidence 356799999999999876552 11111 23334433 366777766543
No 87
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=21.35 E-value=2.3e+02 Score=21.34 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=25.7
Q ss_pred EEcCCCeEEEE-------------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 81 YRLPDGTHFII-------------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 81 ~~~~~G~~~i~-------------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
..|.+|.+... +-.+||+.|...-++..++.+.
T Consensus 166 ~~dG~GTlltTe~clLn~nRNp~lsk~eie~~Lk~~LG~~kvIWL~ 211 (377)
T 2ewo_A 166 HVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVK 211 (377)
T ss_dssp EEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEEC
T ss_pred EECCCceEEEEcccccCCCCCCccCHHHHHHHHHHHcCCCEEEEcC
Confidence 44566666655 6789999999877999998886
No 88
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=21.20 E-value=1.9e+02 Score=19.33 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=48.0
Q ss_pred CCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcCCC-eEEEE-------ChHHHHHHHhcCCCcccEEE
Q psy4966 40 PDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG-THFII-------SPCELESIFRQHPDVEDVAV 111 (149)
Q Consensus 40 ~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G-~~~i~-------~~~eIE~~l~~~~~V~~~~v 111 (149)
++|+.|...|-|..+.||.+... ..|..=.-++.||..++...+ .+.+. .+.+++ +|...++-...-+
T Consensus 68 ~pG~~Gn~vIaGH~~~G~~g~~~---~~F~~L~~lk~GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~-vl~~~~g~~~LTL 143 (187)
T 3fn5_A 68 VMGGENNYSLASHHIFGITGSSQ---MLFSPLERAQNGMSIYLTDKEKIYEYIIKDVFTVAPERVD-VIDDTAGLKEVTL 143 (187)
T ss_dssp CTTSSSEEEEECCCCCSSTTGGG---STTGGGGGCCTTCEEEEECSSEEEEEEEEEEEEECTTCGG-GGSCCTTCCEEEE
T ss_pred CCCCCCcEEEEEecccCCcCCCC---ccccCHhHCcCCCEEEEEECCeEEEEEEeeEEEECcccce-eeccCCCCCEEEE
Confidence 56777888888877667653222 223211236789988885443 33332 666663 3444444445555
Q ss_pred EeeecCCCCCeEEEEEEe
Q psy4966 112 IGIPHDVFGELPAAVVVP 129 (149)
Q Consensus 112 ~~~~~~~~g~~~~a~v~~ 129 (149)
+.+..-...++++....+
T Consensus 144 iTC~p~~~~~RliV~a~l 161 (187)
T 3fn5_A 144 VTCTDIEATERIIVKGEL 161 (187)
T ss_dssp EEESSTTCCSEEEEEEEE
T ss_pred EeCCCCCCCcEEEEEEEE
Confidence 555432344777766655
No 89
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.19 E-value=1.3e+02 Score=17.31 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=28.5
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|..+++|.++.+- -..+. + .|.. ..+.+.|.+.+++
T Consensus 32 C~~~Ie~aL~~l~GV~~v~vd----l~~~~-~--~V~~----~~~~~~i~~~i~~ 75 (98)
T 2crl_A 32 CVDAVRKSLQGVAGVQDVEVH----LEDQM-V--LVHT----TLPSQEVQALLEG 75 (98)
T ss_dssp HHHHHHHTTTTCTTCCEEEEE----TTTTE-E--EEEE----SSCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCceEEEEE----CCCCE-E--EEEE----eCCHHHHHHHHHH
Confidence 567899999999999987663 11111 1 2222 2566777777764
No 90
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=21.19 E-value=93 Score=21.99 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=29.7
Q ss_pred EEc-CceEEEcCCCeEEEE--------ChHHHHHHHhcCCCcccEEEEe
Q psy4966 74 LHT-GDLAYRLPDGTHFII--------SPCELESIFRQHPDVEDVAVIG 113 (149)
Q Consensus 74 ~~T-GD~~~~~~~G~~~i~--------~~~eIE~~l~~~~~V~~~~v~~ 113 (149)
+|+ ++-.++.++|++.+- .|.+++..|.++|+|-+.-++.
T Consensus 173 lR~~~~~p~vTDnGn~IlD~~f~~~i~dp~~l~~~l~~i~GVVe~GlF~ 221 (244)
T 2f8m_A 173 IRKRNGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFV 221 (244)
T ss_dssp ECEETTEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEESEEC
T ss_pred EEEcCCCcEEcCCCCEEEEecCCCCCCCHHHHHHHHhcCCCcceeeeEe
Confidence 554 344466677877553 6899999999999998877764
No 91
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=21.09 E-value=73 Score=17.57 Aligned_cols=14 Identities=0% Similarity=0.064 Sum_probs=10.5
Q ss_pred ccCCceEEEEcCCC
Q psy4966 22 FQEHNAIKIIDPVT 35 (149)
Q Consensus 22 p~~~~~~~i~d~~~ 35 (149)
.+||+.+++.+|.+
T Consensus 2 ilPG~~V~V~np~~ 15 (66)
T 2jz2_A 2 IFPGATVRVTNVDD 15 (66)
T ss_dssp CCTTCEEEECCTTS
T ss_pred ccCCCEEEEeCCCC
Confidence 47899998888543
No 92
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=21.04 E-value=70 Score=16.33 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=28.2
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~ 146 (149)
....||+.|..+++|.++.+- ...+. +.+...+ ...+.+.|.+.+.+
T Consensus 19 C~~~i~~~l~~~~gv~~~~v~----~~~~~---~~v~~~~-~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 19 CVNAIESSVKELNGVEQVKVQ----LAEGT---VEVTIDS-SVVTLKDIVAVIED 65 (71)
T ss_dssp HHHHHHHHHHTSTTEEEEEEE----TTTTE---EEEEEET-TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEE----ecCCE---EEEEECC-CCCCHHHHHHHHHH
Confidence 456799999999999877653 11111 2333333 23566777766543
No 93
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=20.69 E-value=77 Score=16.17 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=27.9
Q ss_pred ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145 (149)
Q Consensus 92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~ 145 (149)
....||+.|..+++|..+.+-. ..+ .+.+...+. ..+.+.+.+.+.
T Consensus 17 C~~~i~~~l~~~~gv~~~~v~~----~~~---~~~v~~~~~-~~~~~~i~~~i~ 62 (72)
T 1aw0_A 17 CVQSIEGVISKKPGVKSIRVSL----ANS---NGTVEYDPL-LTSPETLRGAIE 62 (72)
T ss_dssp HHHHHHHHHHTSTTCCCEEEET----TTT---EEEEEECTT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEEc----cCC---EEEEEECCC-cCCHHHHHHHHH
Confidence 4567999999999998876632 111 123334432 355666666554
Done!