RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4966
(149 letters)
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 148 bits (377), Expect = 1e-43
Identities = 61/133 (45%), Positives = 77/133 (57%), Gaps = 15/133 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
KI+D L + GELC+KG + GY N EATKE +D+DGWLHTGD+ Y DG
Sbjct: 327 AKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDG 386
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+I + P ELE++ +HP V D AVIGIP +V GELP A VV KP
Sbjct: 387 NFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPG 446
Query: 133 SSVTAEEVKQFVE 145
S +T +EVK +V
Sbjct: 447 SKLTEQEVKDYVA 459
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 138 bits (351), Expect = 8e-41
Identities = 55/136 (40%), Positives = 74/136 (54%), Gaps = 16/136 (11%)
Query: 24 EHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
+KI+DP ++P G+ GE+C++G V GY N EAT E +D DGWLHTGDL Y
Sbjct: 180 PGVEVKIVDPDGG-EVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYM 238
Query: 83 LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
DG I I P E+E HP V + AV+G+P + GE+ AA VV
Sbjct: 239 DEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVV 298
Query: 129 PKPNSSVTAEEVKQFV 144
KP +++T EE+ F
Sbjct: 299 LKPGATLTEEELIAFC 314
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 135 bits (342), Expect = 2e-38
Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 15/132 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
KI+DP T LP + GEL ++G V GY N EAT E +D DGWLHTGDL Y DG
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDG 400
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
FI ++P ELE++ HP++ D AVI P + GE+P A VV +P
Sbjct: 401 YLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPG 460
Query: 133 SSVTAEEVKQFV 144
S ++ +EV QFV
Sbjct: 461 SELSEDEVMQFV 472
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 130 bits (329), Expect = 2e-36
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 18/135 (13%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++I+DP LP G+ GE+ ++G V GY N+ EAT E D+DGWL TGDL Y DG
Sbjct: 357 VRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDG 415
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131
+I I P E+E++ +HP V + AV+G+P + +GE AVVV KP
Sbjct: 416 YLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPG 475
Query: 132 -NSSVTAEEVKQFVE 145
++ +TAEE++ F+
Sbjct: 476 GDAELTAEELRAFLR 490
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 128 bits (325), Expect = 5e-36
Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 17/131 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+KI+D + LP G+ GEL ++G V GY N+ E T E+L D GWL TGD+ Y DG
Sbjct: 306 VKIVDDEGNE-LPPGEVGELVVRGPQVMKGYWNRPEETAEVLTD-GWLRTGDIGYMDEDG 363
Query: 87 --------THFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
II P E+E + HP V + AV+G+P GE A VV K
Sbjct: 364 YFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEG 423
Query: 133 SSVTAEEVKQF 143
+S+T EE+ F
Sbjct: 424 ASLTEEELIAF 434
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 124 bits (315), Expect = 2e-35
Identities = 56/132 (42%), Positives = 77/132 (58%), Gaps = 17/132 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++I+D +LP G+ GE+ ++G V GY N+ EAT E L D GWLHTGDL Y DG
Sbjct: 180 VRIVDEDGR-ELPPGEVGEIVVRGPAVMAGYWNRPEATAEALRD-GWLHTGDLGYLDEDG 237
Query: 87 THF--------IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+ IIS P E+E++ HP V DVAVIG+P + +GE AVVV +P
Sbjct: 238 YLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPG 297
Query: 133 SSVTAEEVKQFV 144
+++ AEE+ F
Sbjct: 298 ATLDAEELIAFC 309
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 124 bits (314), Expect = 3e-34
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 15/136 (11%)
Query: 23 QEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
H +KI+DP T +P G+ GELC +G V GY N E T E +D DGW+HTGDLA
Sbjct: 377 LPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAV 436
Query: 82 RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
+G I I P E+E HP ++DV V+G+P + +GE A +
Sbjct: 437 MDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWI 496
Query: 128 VPKPNSSVTAEEVKQF 143
+ +P +++T E+V+ F
Sbjct: 497 ILRPGATLTEEDVRDF 512
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 122 bits (309), Expect = 2e-33
Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 17/134 (12%)
Query: 28 IKIIDPVTSVQLPDGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
+I+D PDG GE+ ++G + GY N+ EAT E +D GWLHTGD+ Y D
Sbjct: 350 ARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG-GWLHTGDVGYIDED 408
Query: 86 GTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
G +I I P ELE HP V +VAVIG+P + +GE P AVVV KP
Sbjct: 409 GYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKP 468
Query: 132 NSSVTAEEVKQFVE 145
+++ A+E++ F+
Sbjct: 469 GATLDAKELRAFLR 482
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 120 bits (304), Expect = 3e-33
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 16/131 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++I+D L G+ GE+ ++G VF Y NK EAT E +DGW TGD+ DG
Sbjct: 269 VRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDG 328
Query: 87 THFI---------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
+ I +S E+E +HP V +VAVIG+P +GE AVVVP+
Sbjct: 329 YYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEA 388
Query: 132 NSSVTAEEVKQ 142
+++T E++
Sbjct: 389 GAALTLAELRA 399
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 118 bits (297), Expect = 7e-33
Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 26 NAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
+ I+D LP G+ GE+ ++G V GY N EA +E D GW TGDL Y
Sbjct: 180 VEVAILDDDGRP-LPPGQEGEIVIRGPNVTAGYLNNPEANREAFRD-GWFRTGDLGYLDE 237
Query: 85 DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
DG F+ ISP E+E + +HP V + V G+P +++GE AA VV +
Sbjct: 238 DGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLR 297
Query: 131 PNSSVTAEEVKQFV 144
+S VT EE++ F
Sbjct: 298 ADSKVTIEELRDFA 311
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 117 bits (294), Expect = 2e-31
Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 16/135 (11%)
Query: 26 NA-IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
NA +KI+DP T LP + GE+C++G + GY N EAT +D DGWLHTGD+ Y
Sbjct: 364 NAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYID 423
Query: 84 PDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
D FI+ +P ELE++ HP + D AV+ + +V GE+P A VV
Sbjct: 424 DDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVR 483
Query: 130 KPNSSVTAEEVKQFV 144
S +T +E+KQFV
Sbjct: 484 SNGSEITEDEIKQFV 498
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 113 bits (286), Expect = 2e-31
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 25 HNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
++++D LP G+ GEL ++G V GY N T +DGW TGDL Y
Sbjct: 177 GVEVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLD 235
Query: 84 PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
+G +I + P E+ES+ QHP V + AV+G+P + GE A VV
Sbjct: 236 EEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVL 295
Query: 130 KPNSSVTAEEVKQFV 144
+P + AEE+K +
Sbjct: 296 RPGADALAEELKAHL 310
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 108 bits (271), Expect = 1e-28
Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKE---MLDDDGWLHTGDLAYRL 83
++IDP T +LP G+ GE+ ++G VF GY N+ EAT E LD + TGDL Y
Sbjct: 262 ARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYID 321
Query: 84 PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
+G F + P E+E++ QHP V +V VIG P GE+ A VV
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381
Query: 130 KPN--SSVTAEEV 140
KP+ VT E++
Sbjct: 382 KPDYRGKVTEEDI 394
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 106 bits (268), Expect = 5e-28
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 24 EHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
+ I+I+D +P G+ GEL +G GY E DDG+ TGDL
Sbjct: 316 PADEIRIVDDQGEP-VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRI 374
Query: 83 LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
DG + + ISP E+E++ HP V D AV+G+P +V GE A VV
Sbjct: 375 DADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVV 434
Query: 129 PKPNSSVTAEEVKQF 143
P+ ++ T E++ F
Sbjct: 435 PRGGAAPTLAELRAF 449
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 106 bits (265), Expect = 2e-27
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 16/136 (11%)
Query: 23 QEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
Q H +K++DP + +P G+ GELC +G V GY N EAT E +D+DGW+HTGDLA
Sbjct: 379 QPHLEVKVVDPDGAT-VPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLAT 437
Query: 82 RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
G I I P E+E HP V DV V G+P + +GE A V
Sbjct: 438 MDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWV 497
Query: 128 VPKPNSSVTAEEVKQF 143
P + + EE+++F
Sbjct: 498 RLHPGHAASEEELREF 513
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 104 bits (263), Expect = 3e-27
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 16/128 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
KI++ + ++P G+ GEL ++G +V GY + EAT +D DGWLHTGDL +G
Sbjct: 348 NKIVNELGE-EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEG 406
Query: 87 THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+I+ P E+E + +HP V + AVIG+P + GE+ A VV KP
Sbjct: 407 YLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG 466
Query: 133 SSVTAEEV 140
+ +T EE+
Sbjct: 467 AELTEEEL 474
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 104 bits (261), Expect = 3e-27
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGDV----FLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
++I+D ++P G+ GEL ++ F GY EAT + + GW HTGD R
Sbjct: 256 VRIVDEDGR-EVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAWRN-GWFHTGDRGRRD 313
Query: 84 PDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
DG +F+ IS E+E+ HP V + AV+ +P ++ + AVVV
Sbjct: 314 EDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVL 373
Query: 130 KPNSSVTAEEVKQF 143
+P ++ E + +F
Sbjct: 374 RPGETLDPEALLEF 387
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 104 bits (261), Expect = 4e-27
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 26 NAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
++I+D +P G+ GEL ++G +FLGY + + T E DDGW TGDL
Sbjct: 271 VEVRIVDD-DGNDVPPGEEGELQVRGPQLFLGYLDPPDNT-EAFTDDGWFRTGDLGRLDA 328
Query: 85 DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
DG I IS E+E + +HP V +VAV+ +P + GE AVVVP
Sbjct: 329 DGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPA 388
Query: 131 PNSSVTAEEVKQF 143
P +S+T E+ +
Sbjct: 389 PGASLTLAELTEH 401
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 104 bits (261), Expect = 6e-27
Identities = 51/131 (38%), Positives = 67/131 (51%), Gaps = 16/131 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
K+ID +LP G+ GELC+KG V GY + EAT E+LD DGWL TGD+A DG
Sbjct: 389 CKVIDDD-GNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDG 447
Query: 87 --------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+ F + P ELE + P V A IG+P + GE VV KP
Sbjct: 448 YMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG 507
Query: 133 SSVTAEEVKQF 143
++T E+V +
Sbjct: 508 ETLTKEQVMEH 518
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 103 bits (259), Expect = 8e-27
Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+K IDP T LP GELC++ V GY N E T +D+DGWLHTGD+ Y DG
Sbjct: 372 VKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDG 431
Query: 87 THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
FI+ +P ELE+I HP VED AV+ +P + GE+PAA VV P
Sbjct: 432 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK 491
Query: 133 SSVTAEEVKQFV 144
+ + E++ FV
Sbjct: 492 AKESEEDILNFV 503
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 103 bits (258), Expect = 2e-26
Identities = 54/135 (40%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 28 IKIIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
++I+D +LP DGKT GEL ++G V Y E T+E L DGW TGD+A
Sbjct: 352 LRIVDDEG-NELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE-LTRDGWFRTGDVAVIDE 409
Query: 85 DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
DG I IS ELE+ HP V + AV+G+PH+ +GE P AVVV K
Sbjct: 410 DGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLK 469
Query: 131 PNSSVTAEEVKQFVE 145
P + VT EE+ + +
Sbjct: 470 PGAKVTEEELLEHLA 484
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 102 bits (256), Expect = 3e-26
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 22/137 (16%)
Query: 26 NAIKIIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
+ ++DP T +P DGKT GE+ ++G+ V GY EAT+E GW H+GDLA
Sbjct: 353 EEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAG-GWFHSGDLAVV 411
Query: 83 LPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 126
PDG +I IS E+E + +HP V + AV+ P + +GE P A
Sbjct: 412 HPDG--YIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469
Query: 127 VVPKPNSSVTAEEVKQF 143
VV KP +SVT EE+ ++
Sbjct: 470 VVLKPGASVTEEELIEY 486
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 100 bits (250), Expect = 2e-25
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 16/120 (13%)
Query: 40 PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI-------- 90
G+ GE+C++G V GY N+ E T E D GWLHTGD+A DG ++I
Sbjct: 361 AQGEVGEICVRGPLVMDGYWNRPEETAEAFRD-GWLHTGDVAREDEDGFYYIVDRKKDMI 419
Query: 91 ------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
+ P E+E + +HP V VAVIG+P + +GE AVVV +P ++V A E++ V
Sbjct: 420 VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHV 479
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 98.8 bits (247), Expect = 3e-25
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 17/127 (13%)
Query: 33 PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
P +++ + + GE+ ++G +FLGY + T LD+DGW HTGDL Y +G ++
Sbjct: 249 PGRELRIVNPQDGEILVRGPSLFLGYLPQGGLTPP-LDEDGWFHTGDLGYLDAEGYLYVL 307
Query: 91 -------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA 137
I P E+E++ QHP VE+ AV+G+P D +G+ P A VVP + V+
Sbjct: 308 GRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPN-DDPVSV 366
Query: 138 EEVKQFV 144
EE++ F+
Sbjct: 367 EELQAFL 373
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 96.5 bits (240), Expect = 4e-24
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
Query: 26 NAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
++ID + ++ G+ GEL ++G +V Y N+ +AT+E + D GWL TGDLA
Sbjct: 326 CDYELIDENKN-KVEVGEVGELLIRGPNVMKEYWNRPDATEETIQD-GWLCTGDLARVDE 383
Query: 85 DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
DG +I I P E+E + + DV +VAV+G H +GE+P A +V K
Sbjct: 384 DGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKK 443
Query: 131 PNSSVTAEEVKQ 142
+S + ++V +
Sbjct: 444 SSSVLIEKDVIE 455
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 96.3 bits (240), Expect = 5e-24
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 19/135 (14%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKG----DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
+I D + LP G+ GE+C+KG +F Y +AT ++L+ DGWLHTGD Y
Sbjct: 352 EIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE 410
Query: 85 DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
+G + +S ELE+I HP ++D+ V+GI + E A VV
Sbjct: 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLN 470
Query: 131 PNSSVTAEEVKQFVE 145
+++ EE F E
Sbjct: 471 EGETLSEEEFFAFCE 485
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 94.5 bits (235), Expect = 2e-23
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
K++D T LP G GEL ++G V GY N +AT+ +D DGWL TGD+AY DG
Sbjct: 386 KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGY 445
Query: 88 HFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
+I I+P +LE++ HP++ D AV +P GE+P A VV + S
Sbjct: 446 LYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS 505
Query: 134 SVTAEEVKQFVE 145
+++ E V +V
Sbjct: 506 TLSQEAVINYVA 517
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 92.8 bits (231), Expect = 8e-23
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 18/131 (13%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
IK++D + +P G+ GEL +KG V LGY + EAT E++ D GWL TGD+A +G
Sbjct: 389 IKLVDDDGNE-VPPGEPGELWVKGPQVMLGYWQRPEATDEVIKD-GWLATGDIAVMDEEG 446
Query: 87 THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
I+ P E+E + HP V +VA +G+P +V GE VV K +
Sbjct: 447 FLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK-D 505
Query: 133 SSVTAEEVKQF 143
S+T EE+
Sbjct: 506 PSLTEEELITH 516
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 90.5 bits (225), Expect = 5e-22
Identities = 48/127 (37%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
KI D T LP G GE+ ++ L GY NK EAT E L D GWLHTGD+ G
Sbjct: 398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRD-GWLHTGDIGKIDEQG 456
Query: 87 -THFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
H++ + P E+E++ QHP V AV+G P G++P A V KP
Sbjct: 457 FLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG 516
Query: 133 SSVTAEE 139
+ +TA
Sbjct: 517 ADLTAAA 523
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 90.3 bits (224), Expect = 6e-22
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 17/132 (12%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
A+K+ID +LP G+ GELC+KG V GY + EAT E LD +GW TGD+A PD
Sbjct: 396 ALKVIDD-DGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD 454
Query: 86 G--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
G + F + P E+E + HP V + A IG+P + GE VV +
Sbjct: 455 GFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVAR- 513
Query: 132 NSSVTAEEVKQF 143
+ ++ EE+K +
Sbjct: 514 DPGLSVEELKAY 525
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 89.3 bits (222), Expect = 1e-21
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
LP G+TGE+C+ G VF GY N EA + D GW TGDL + G +I
Sbjct: 361 LPPGETGEICVIGPAVFAGYYNNPEANAKAFRD-GWFRTGDLGHLDARGFLYITGRASDM 419
Query: 91 -IS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
IS P E+E HP V +VAV+G+P V+GE+ AV V + + V E+ +
Sbjct: 420 YISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAW 479
Query: 144 VE 145
++
Sbjct: 480 LD 481
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 87.0 bits (216), Expect = 5e-21
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 25 HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWL--HTGDLAY 81
+K++D +P G+ GELC++G V GY N E T E +DGW TGDL
Sbjct: 310 GVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGR 368
Query: 82 RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAV 111
DG I I P E+E++ +HP V + AV
Sbjct: 369 WDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 86.1 bits (214), Expect = 7e-21
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 42 GKTGELCLKGD-VFLGYRNKVEATKEMLD-----DDGWLHTGDLAYRLPDGTHFI----- 90
G+ GEL +G V GY N EAT E L + L+TGDL +G +
Sbjct: 195 GEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKD 254
Query: 91 ---------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
+SP E+E + HP V + AVIG+P + G+ AVVV S+ +E+
Sbjct: 255 DMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELL 314
Query: 142 QF 143
+
Sbjct: 315 KH 316
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 85.8 bits (213), Expect = 3e-20
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 21/134 (15%)
Query: 28 IKIIDPVT-SVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
++I+DP +PDG+ GEL ++G VF GY N+ E T + D GW TGD+ D
Sbjct: 400 VRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLD-GWFRTGDVVVMEED 458
Query: 86 GTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
G FI + P E+E + R+HP VED AV+G+P + E A VV
Sbjct: 459 G--FIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVL 516
Query: 130 KPNSSVTAEEVKQF 143
+P +++ E ++ +
Sbjct: 517 EPGAALDPEGLRAY 530
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 85.3 bits (212), Expect = 3e-20
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+++ DP T +LP G+ G + +KG +VF GY E T E DG+ TGDL G
Sbjct: 332 LRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERG 391
Query: 87 --------THFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
IIS P E+E + P V + AVIG+PH FGE AVVVPKP
Sbjct: 392 YVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPG 451
Query: 133 SSVTAEEV 140
+++ +
Sbjct: 452 AALDEAAI 459
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 85.1 bits (211), Expect = 4e-20
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++++D LP G+ G L ++G F GY + + D DGW TGDLA DG
Sbjct: 377 VRVVDA-DGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLARIDADG 433
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
I I E+E++ +HP + VA++ P + GE A VVP+P
Sbjct: 434 YIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG 493
Query: 133 SSVTAEEVKQFVE 145
S+ EE+ +F++
Sbjct: 494 QSLDFEEMVEFLK 506
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 84.1 bits (208), Expect = 9e-20
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 40 PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIIS------ 92
P G GEL L+G + GY + +AT DGW TGD+A R DG +++
Sbjct: 328 PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMF 387
Query: 93 --------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
P E+E++ HP + + AV+G+ +GE+ +VP + + E ++ +
Sbjct: 388 ISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHL 447
Query: 145 E 145
Sbjct: 448 S 448
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 83.5 bits (207), Expect = 1e-19
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 33 PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
P V++ D GE+ ++G V GY EAT E +DGW TGDL DG I
Sbjct: 411 PGIEVKIAD--DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVIT 468
Query: 91 --------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
I+P +ES + P +E + V+G A++VP ++
Sbjct: 469 GRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKK----FLVALIVPDFDA 521
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 82.3 bits (204), Expect = 4e-19
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEM---LDDDGWLHTGDLAYRLP 84
++IDP T +LP G+ GE+ + G VF GY N+ EAT E +D + TGDL
Sbjct: 369 RVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE 428
Query: 85 DGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
+G FI P E+E++ +HP +++ VI P GE AVVV +
Sbjct: 429 EGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLR 488
Query: 131 PNS--SVTAEEV 140
P + T EE+
Sbjct: 489 PEARGKTTEEEI 500
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 82.3 bits (204), Expect = 4e-19
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 20/133 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+KI V +P + GE+ +KG +V GY N+ +AT+E D GW TGD+ Y +G
Sbjct: 318 LKIEK--DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQD-GWFKTGDIGYLDEEG 374
Query: 87 THF--------IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+ IIS P E+E + HP V + V+G+P D +G++P A VV +
Sbjct: 375 FLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVV--KS 432
Query: 133 SSVTAEEVKQFVE 145
VT EE++ F E
Sbjct: 433 GEVTEEELRHFCE 445
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 81.7 bits (202), Expect = 5e-19
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++ DP LPDG++GE+ ++ + GY + +AT L DDG+ TGDL Y DG
Sbjct: 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420
Query: 87 TH--------------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
F+++P E+E P V V+G D P A V+P
Sbjct: 421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTV-PVAFVIPTDG 479
Query: 133 SSVTAEEVK 141
+S +
Sbjct: 480 ASPDEAGLM 488
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 81.9 bits (203), Expect = 6e-19
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 39 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
+ G+ GE+ + + LGY + E T E GW H+GDL +G +
Sbjct: 362 VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRG-GWFHSGDLGVMDEEGYITVVDRKKDM 420
Query: 91 -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV 140
++ E+E HP V +VAVIG+P + E AVVVPK ++VT +E+
Sbjct: 421 IKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDEL 477
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 81.6 bits (202), Expect = 6e-19
Identities = 45/121 (37%), Positives = 60/121 (49%), Gaps = 19/121 (15%)
Query: 41 DGKT-GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI-------- 90
DG+T GEL ++G +F GY N+ +AT DGW TGD+A PDG H I
Sbjct: 317 DGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDL 376
Query: 91 -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
I E+E+ HP V + AV+G+P D G+ A VV V A+E+ F
Sbjct: 377 IKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVV--GADDVAADELIDF 434
Query: 144 V 144
V
Sbjct: 435 V 435
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 81.6 bits (202), Expect = 6e-19
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+K++D ++ DG+ GEL ++GD GY N+ E T+E W TGD YR DG
Sbjct: 341 VKLVDEDGE-EVADGEIGELWVRGDSSAAGYWNRREKTRETFVG-EWTRTGDKYYRDEDG 398
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
++ +SP E+E QHP V + AV+G + P A VV K
Sbjct: 399 YYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDG 458
Query: 133 ---SSVTAEEVKQFV 144
S E+K FV
Sbjct: 459 YQPSPELETELKDFV 473
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 81.1 bits (201), Expect = 9e-19
Identities = 50/140 (35%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 21 HFQEHNAIKIIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTG 77
QE + ++DP T +P DG+T GE+ +G+ V GY +AT+E GW HTG
Sbjct: 365 PLQE--GVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAG-GWFHTG 421
Query: 78 DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
DLA PDG I IS E+E + +HP V AV+ P +GE+P
Sbjct: 422 DLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVP 481
Query: 124 AAVVVPKPNSSVTAEEVKQF 143
A V K +S T EE+
Sbjct: 482 CAFVELKDGASATEEEIIAH 501
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 80.5 bits (199), Expect = 1e-18
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD---VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
+ ++D +P G+ GE+ +K +FLGY N EAT D WL TGDL R
Sbjct: 271 VAVVDD-AGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-WLLTGDLGRRDA 328
Query: 85 DG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
DG + + I P E+E +HP V + AV+G+P GE+ A VV
Sbjct: 329 DGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLA 388
Query: 131 PN---SSVTAEEVKQFV-------EFPR 148
S A E+++ V E+PR
Sbjct: 389 EGVEPSDELATELQELVKSRLAAHEYPR 416
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 80.2 bits (198), Expect = 2e-18
Identities = 47/134 (35%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
IK++D LP G GE +G +VF+GY ++ E T LD++GW ++GDL G
Sbjct: 366 IKVVDEARK-TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAG 424
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
I IS E+E I QHP + D V+ +P + GE A VV K
Sbjct: 425 YIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAP 484
Query: 133 -SSVTAEEVKQFVE 145
S+T EEV F
Sbjct: 485 HHSLTLEEVVAFFS 498
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 78.9 bits (195), Expect = 4e-18
Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 42 GKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
G+ G L ++G VF GY N +DGWL+TGDL DG ++
Sbjct: 204 GEVGVLAIRGPNVFPGYLNDAHN-AGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIR 262
Query: 91 ----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
I P +E +HP V A +G P GELP A V KP ++VT E+ FV
Sbjct: 263 GGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFV 320
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 79.2 bits (195), Expect = 4e-18
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 16/118 (13%)
Query: 39 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIIS----- 92
L G+ GELC+KG V GY + E T +++D DGWLHTGD+A G +I+
Sbjct: 403 LAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDM 462
Query: 93 ---------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
P E+E + P V +VA +G+P + GE+ V+V K + ++TAE+VK
Sbjct: 463 ILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIV-KKDPALTAEDVK 519
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 78.7 bits (195), Expect = 6e-18
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 33 PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
P+ V++ + GE+ ++G V GY EAT E LD+DGWLHTGD+ DG I
Sbjct: 271 PLPGVEVRIAEDGEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVIT 330
Query: 91 --------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
I+P +E+ + P + V+G A++V P +
Sbjct: 331 DRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDR----PYLTALIVLDPEA 383
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 77.3 bits (191), Expect = 2e-17
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 42 GKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
+ G LC+ G +VF GY K + +DGWL+TGDL DG ++
Sbjct: 415 DEVGVLCIAGPNVFSGYLE-AAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIR 473
Query: 91 ----ISPCELESIFRQHPDVEDVAVIGIPHDVF-GELPAAVVVPKPNSSVTAEEVKQFV 144
I P +E +HP V A +G P D GELP A V KP +S T E+ F
Sbjct: 474 GGHNIDPAAIEEALLRHPAVALAAAVGRP-DAHAGELPVAYVQLKPGASATEAELLAFA 531
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 76.8 bits (190), Expect = 3e-17
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 19/104 (18%)
Query: 45 GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII------------ 91
GE+C++G +VF GY E T E D+DGW HTGD+ LPDGT II
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQG 410
Query: 92 ---SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+ +LE+I++ P V+ + V G F A+VVP +
Sbjct: 411 EYVALEKLENIYKSSPLVDQICVYGDSLKSF---LVAIVVPDED 451
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 76.2 bits (188), Expect = 5e-17
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 30/140 (21%)
Query: 39 LPDGKTGELCLKGD-----VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG------- 86
LP G+ G++ ++ +F GY E T+ + D W TGD A + DG
Sbjct: 270 LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-WYLTGDRAIKDEDGYFWFVGR 328
Query: 87 -------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---SSVT 136
+ + I P E+ES +HP V + AV+G P V GE+ A VV P S
Sbjct: 329 ADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEEL 388
Query: 137 AEEVKQFV-------EFPRK 149
A+E+++ V ++PR+
Sbjct: 389 AKELQEHVKKRTAPYKYPRE 408
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 75.7 bits (186), Expect = 7e-17
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 36 SVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT------ 87
LP+G+ GEL + F GY N+ +AT E L D GW T D+A P GT
Sbjct: 339 DEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQD-GWYRTSDVAVVDPSGTVRILGR 397
Query: 88 --HFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEE 139
IIS P E+E + + P V +V VIG+P + +G+ A VVP+ +++A+
Sbjct: 398 VDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSADA 457
Query: 140 VKQF 143
+ F
Sbjct: 458 LDTF 461
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 74.6 bits (184), Expect = 2e-16
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGDVF-LGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++I+D +LP G+ G + + D + Y N E T + GW+ GD+ Y DG
Sbjct: 325 VRILDE-DGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDG 383
Query: 87 --------THFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+ IIS P E+E++ HP V DVAV G+P + GE AVV P
Sbjct: 384 YLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADG 443
Query: 133 ---SSVTAEEVKQFVE 145
A E+ ++
Sbjct: 444 ADAGDALAAELIAWLR 459
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 74.1 bits (182), Expect = 2e-16
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 23/136 (16%)
Query: 30 IIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++D T +P DGKT GE+ ++G+ V GY +A +E + GW H+GDL + PDG
Sbjct: 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFAN-GWFHSGDLGVKHPDG 444
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131
I IS E+E++ HP V + +V+ P + +GE P A V KP
Sbjct: 445 YIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPG 504
Query: 132 ----NSSVTAEEVKQF 143
+ + AE++ +F
Sbjct: 505 VDKSDEAALAEDIMKF 520
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 73.9 bits (182), Expect = 3e-16
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKGD---VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
A++ +D + GEL ++ + L Y N E KE + GD A R
Sbjct: 351 AVRRVDDEGNP--VPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRT-GDWAERD 407
Query: 84 PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
DG ++ I P E+ES+ HP V + AV+G+P G++ A VV
Sbjct: 408 EDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVL 467
Query: 130 KPNSSVT--AEEVKQFVE 145
AEE+++ V
Sbjct: 468 AAGVEPNELAEEIRRHVA 485
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 74.0 bits (182), Expect = 3e-16
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 28 IKIIDPVTSVQLPDGKT-GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+KI D DGKT G L ++G +V+ E+LDDDG+ TGD+A G
Sbjct: 367 MKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDG--EILDDDGFFDTGDVATIDAYG 424
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
I IS +LE++ HP V + AVIG+ H + E P +V KP
Sbjct: 425 YMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPG 484
Query: 133 SSVTAEEVKQFVE 145
+ T EE+ ++++
Sbjct: 485 ETATREEILKYMD 497
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 73.5 bits (181), Expect = 4e-16
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+++D +P G G+L ++G + GY N E T+ L D GWL TGD R DG
Sbjct: 271 ARLVDESGRE-VPAGTVGDLWVRGPSLAPGYWNLPEKTQRTLRD-GWLRTGDRFSRDADG 328
Query: 87 THF--------------IISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131
+ +SP E+E+ +HP V + AV+ +P + A VVP+P
Sbjct: 329 WYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPG 388
Query: 132 --NSSVTAEEVKQFV 144
+ ++ +F+
Sbjct: 389 EAIQQLLERDLHRFL 403
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 73.8 bits (181), Expect = 4e-16
Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 29/154 (18%)
Query: 5 VGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEA 63
GLVG+S TG + I+ + LP G GE+ L+G V GY
Sbjct: 354 TGLVGRS------TGAQIR------IVGS-DGLPLPAGAVGEVWLRGTTVVRGYLGDPTI 400
Query: 64 TKEMLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDV 109
T D GWL TGDL G I ISP +E + HP+V +
Sbjct: 401 TAANFTD-GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEA 459
Query: 110 AVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
AV G+P ++GE AAV+VP+ ++ TAEE+ QF
Sbjct: 460 AVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQF 493
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 73.2 bits (180), Expect = 5e-16
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 25/139 (17%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-----VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
+ ++D ++P GE+ L + LGY E T G+ TGD AYR
Sbjct: 262 VVLLDDE-GKEIPV-TEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRG-GYYRTGDKAYR 318
Query: 83 LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
DG + ISP E+ES +HP V + AV+ P + +P A +V
Sbjct: 319 DEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIV 378
Query: 129 PKPN---SSVTAEEVKQFV 144
KP S A E+ V
Sbjct: 379 LKPGYEPSRELALELFAHV 397
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 72.4 bits (177), Expect = 1e-15
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG- 86
I+ T LP G+ GE+ +KG + GY NK E T +L D GWLHTGD+ Y DG
Sbjct: 388 MIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQD-GWLHTGDVGYMDEDGF 446
Query: 87 -------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
+ F + P E+E + +H V++V IG+P GE A VV K +
Sbjct: 447 FYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506
Query: 134 SVTAEEVKQF 143
+ EE+ QF
Sbjct: 507 ECSEEELNQF 516
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 70.6 bits (173), Expect = 4e-15
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 39 LPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG--------THF 89
+P G+ GE+ + + GY N EAT E GW H+GDL + +G
Sbjct: 366 VPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG-GWFHSGDLVRQDEEGYVWVVDRKKDM 424
Query: 90 IISP-----C-ELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP-NSSVTAEEVKQ 142
IIS C E+E++ HPD+ +VAVIG + +GE+P AV + ++++T E++ +
Sbjct: 425 IISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAE 484
Query: 143 FV 144
F+
Sbjct: 485 FL 486
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 70.4 bits (173), Expect = 5e-15
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 70 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 115
W+H GD A DG +I + P E+ES+ HP V + A IG+P
Sbjct: 334 PGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVP 392
Query: 116 HDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
V GE VV KP + +A + +
Sbjct: 393 DPVKGEAIVCFVVLKPGVTPSAALEAELAD 422
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 70.4 bits (173), Expect = 5e-15
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 33 PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
P+ V+L + GE+ ++ + GY E T E +DGWLHTGD DG I
Sbjct: 331 PIPGVELKISEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKIT 390
Query: 91 --------------ISPCELESIFRQHPDVEDVAVIG 113
++P +E++ +P VE V V+G
Sbjct: 391 GRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVG 427
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 69.9 bits (172), Expect = 9e-15
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 38 QLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDD----G--WLHTGDLAYRLPDGT-HF 89
+P G GEL + GD + LGY N+ E T E D G TGDLA PDG F
Sbjct: 317 PVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEF 376
Query: 90 I-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
+ I E+E QHP V + AV+ + A VV + ++
Sbjct: 377 LGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARG--ALD 434
Query: 137 AEEVKQFVE 145
A E++ +
Sbjct: 435 AAELRAHLA 443
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 69.0 bits (169), Expect = 2e-14
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 20/132 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
I+I+D ++P G+ G + ++ D F GY + +TK+ DG++ +GD+ Y +G
Sbjct: 376 IRILDQDFR-EVPTGEVGTIFVRNDTQFDGYTSG--STKDF--HDGFMASGDVGYLDENG 430
Query: 87 THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
F++ P E+E HPDV + AVIG+ + +G+ AA VV KP
Sbjct: 431 RLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG 490
Query: 133 SSVTAEEVKQFV 144
+S T E +KQ V
Sbjct: 491 ASATPETLKQHV 502
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 68.6 bits (168), Expect = 2e-14
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 40 PDGKTGELCLKGD---VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH-FI----- 90
G+ GEL LK +F GY E D GW TGDLAYR DG F+
Sbjct: 286 GPGQVGELALKPGWPSMFRGYLGNEERYASSFVD-GWYLTGDLAYRDEDGYFWFVGRADD 344
Query: 91 --------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
+ P E+ES +HP V + VIG P V GE+ A V +P + E ++
Sbjct: 345 VIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRE 404
Query: 143 FVEFPRK 149
+ F R+
Sbjct: 405 LLTFARQ 411
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 68.3 bits (167), Expect = 2e-14
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 22/149 (14%)
Query: 11 SKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD 69
S+++ G+ F HN I ++ G+ G + +K F+GY +E L+
Sbjct: 302 SERRPNSVGRPF--HNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARE-LN 358
Query: 70 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 115
DGW+ D+ Y +G +I I P E+ES+ +HP V+++ VIG+P
Sbjct: 359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVP 418
Query: 116 HDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
+GE P A++ S T +++K F
Sbjct: 419 DSYWGEKPVAII----KGSATKQQLKSFC 443
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 68.2 bits (168), Expect = 3e-14
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH-------TGDLAYRLPDGT-HF 89
+P G GEL + G V GY N+ E T E D + TGDLA LPDG F
Sbjct: 286 VPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEF 345
Query: 90 I-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
+ I E+E+ HP V + V+ + A VVP + +
Sbjct: 346 LGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELD 405
Query: 137 AEEVKQF 143
A E++ F
Sbjct: 406 AAELRAF 412
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 68.0 bits (166), Expect = 3e-14
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 9 GKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEM 67
G+ +K TG+ H I+I D LP GE+C++G V GY E T E
Sbjct: 312 GREIEKIGSTGRAL-AHVEIRIADGAGRW-LPPNMKGEICMRGPKVTKGYWKDPEKTAEA 369
Query: 68 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 113
D W +GD+ Y +G ++ I+ E+E + + P+V + AVIG
Sbjct: 370 FYGD-WFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIG 428
Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
+ D +GE AVVV P +++T E + +
Sbjct: 429 VHDDRWGERITAVVVLNPGATLTLEALDRHCR 460
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 67.8 bits (166), Expect = 5e-14
Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 39 LPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDG-WLHTGDLAYRLPDG--------THF 89
LP G+ G + +G Y N T E DG W GD+ Y DG
Sbjct: 348 LPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFM 407
Query: 90 IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
IIS P E E++ HP V D AV G+P++ GE AVV P +
Sbjct: 408 IISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAEL 467
Query: 144 VEFPR 148
+ F R
Sbjct: 468 IAFCR 472
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 67.0 bits (164), Expect = 9e-14
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 39 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG----------- 86
LP G+ GE+C++G V GY N+ + T +++ DG+ TGD+ G
Sbjct: 401 LPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDM 460
Query: 87 ---THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
+ F + P E+E + HP V +VA +G+P + GE VV K + ++T E+VK F
Sbjct: 461 ILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK-DPALTEEDVKAF 519
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 66.9 bits (163), Expect = 1e-13
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 22/135 (16%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGY--RNKVEATKEMLDDDGWLHTGDLAYRLP 84
+K+ID +L G+TG L ++G F GY R + +T D +GW TGDLA++
Sbjct: 375 VKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST----DAEGWFDTGDLAFQDA 429
Query: 85 DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
+G I I E+E++ QHP V VA++ P + GE AVVVPK
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489
Query: 131 PNSSVTAEEVKQFVE 145
P ++ + F++
Sbjct: 490 PGCTLDFAAMVAFLK 504
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 66.5 bits (163), Expect = 1e-13
Identities = 36/133 (27%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 24 EHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKE---MLDDDGWLHTGDL 79
I+D +P G+ GEL + G V GY N E T + + W TGDL
Sbjct: 279 PGLRALILDE-DGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDL 337
Query: 80 AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
Y DG I E+E+ R P VE+ V+ +P A
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVA 397
Query: 126 VVVPKPNSSVTAE 138
VV K + T
Sbjct: 398 FVVGKEGALDTKA 410
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 66.4 bits (163), Expect = 1e-13
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 23/157 (14%)
Query: 9 GKSKQKATLTGKH-FQEHNAIKIIDPVTSVQLP-DGKTGELCLKGDVFLGYRNKVEATKE 66
G + A TG F ++D + P G+ G + +G + LGY E T E
Sbjct: 340 GTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPEKTAE 399
Query: 67 ML---DDDGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVE 107
D + GD A DGT I + P E+E + HPDV
Sbjct: 400 TFPTIDGVRYAIPGDRARVEADGT--ITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVA 457
Query: 108 DVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
D V+G+P + +G+ AVV + + E++
Sbjct: 458 DALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHC 494
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 66.1 bits (162), Expect = 1e-13
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 40 PDGKTGELCLKGD-VFLGYRNKVEATKE--MLDDDG--WLHTGDLAYRLPDGT-HFI--- 90
PD GEL + G V LGY E T E + G TGDL PDGT F+
Sbjct: 322 PDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRA 381
Query: 91 ----------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV 140
+ E+E+ +HP V+ V+ + L AA VV + ++V A +
Sbjct: 382 DHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKAL-AAFVVAEDGAAVDAAVL 440
Query: 141 KQFVE 145
+ +
Sbjct: 441 RAALA 445
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 64.7 bits (157), Expect = 5e-13
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 41 DGKT-GELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI-------- 90
DGKT GE+ +KG + GY +AT E GWL+TGD+ PDG I
Sbjct: 388 DGKTMGEIVIKGSSIMKGYLKNPKATSEAFKH-GWLNTGDVGVIHPDGHVEIKDRSKDII 446
Query: 91 ------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
IS E+E++ ++P V + AV+ +PH +GE P A VV + + + V + V
Sbjct: 447 ISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLV 506
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 64.6 bits (158), Expect = 6e-13
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGDV----FLGYRNKVEATKEML--DDDGWLHTGDLAY 81
++++D T +L G+ G + +K + L E K++ G+ TGD Y
Sbjct: 412 VQVLDE-TGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGY 470
Query: 82 RLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
+ DG F++ S E+E +HPDV + AV+G+ ++ G++P +V
Sbjct: 471 KDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLV 530
Query: 128 VPKPNSSVTAEEV 140
V K + + A+++
Sbjct: 531 VLKDDCKIDADQL 543
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 64.3 bits (157), Expect = 8e-13
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 29/144 (20%)
Query: 28 IKIIDPVTSVQLP------------DGKTGELC-LKG-DVFLGYRNKVEATKEMLDDDGW 73
+ I+DP T + P D GEL G F GY N EA E + G
Sbjct: 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRG-GV 382
Query: 74 LHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 119
+GDLAYR DG + + +E I ++PD +VAV +P V
Sbjct: 383 YWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVV 442
Query: 120 GELPAAVVVPKPNSSVTAEEVKQF 143
G+ A +V P + + +F
Sbjct: 443 GDQVMAALVLAPGAKFDPDAFAEF 466
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 63.6 bits (155), Expect = 1e-12
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 28 IKIIDPVTSVQLPDGKT-GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+KI+ DGK G+L ++G + + +A+ DGW TGD+A DG
Sbjct: 367 MKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPL---VDGWFPTGDVATIDADG 423
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
I IS ++E++ HP V + A I H + E P VVV +P
Sbjct: 424 FMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPG 483
Query: 133 SSVTAEEVKQFVE 145
+ VT EE+ F E
Sbjct: 484 AEVTREELLAFYE 496
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 63.6 bits (155), Expect = 1e-12
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 25/120 (20%)
Query: 53 VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELES 98
F GY + E T E++ W TGDL R DG + I P ++ES
Sbjct: 299 WFSGYWDDPEKTAELIAG-RWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES 357
Query: 99 IFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---SSVTAEEVKQFV-------EFPR 148
+HP V + AV+G+P + GE+ A VV K S AEE++ FV +PR
Sbjct: 358 ALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPR 417
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 63.2 bits (154), Expect = 2e-12
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 39 LPDGKTGELCLKGDVF--LGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------ 90
LP G+ GE+ + Y NK E E +D G++ +GD+ Y DG F+
Sbjct: 345 LPQGEIGEIYSRIAGNPDFTYHNKPEKRAE-IDRGGFITSGDVGYLDADGYLFLCDRKRD 403
Query: 91 --------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
I P E+E++ P V D AV GIP FGE AVV P+P +++ +++
Sbjct: 404 MVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRA 463
Query: 143 FVE 145
++
Sbjct: 464 QLK 466
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 63.4 bits (155), Expect = 2e-12
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEM------LDDDGWLHTGDLA 80
++I+DP T LPDG+ GE+ ++G V GY N+ EAT E D+ GWL TGDL
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
Query: 81 YRLPDGTHFI--------------ISPCELE-SIFRQHPDVEDVAVIGIPHDVFGELPAA 125
+ DG ++ P ++E ++ R HP + A D GE
Sbjct: 426 FLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLV 484
Query: 126 VVV 128
VV
Sbjct: 485 VVA 487
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 62.6 bits (153), Expect = 2e-12
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 26/130 (20%)
Query: 38 QLPDGKTGELCLKGD-VFLGYRNKVEATKEML-----DDDG--WLHTGDLAYRLPDGT-- 87
+P G GEL + GD V GY + E T E DD G TGDL PDG
Sbjct: 278 PVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLE 337
Query: 88 ------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNS 133
F I E+E+ R HP V D V+ + + G+ L A VVPK +
Sbjct: 338 YLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVV-VREEGPGDQRL-VAYVVPKAGA 395
Query: 134 SVTAEEVKQF 143
+ AE ++
Sbjct: 396 APDAEALRAA 405
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 62.1 bits (151), Expect = 5e-12
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 38 QLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT-HFI------ 90
++P G+ G L ++G Y + + + DGW TGD+ + DG H++
Sbjct: 333 EVPRGEAGRLAVRGPTGCRYLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVARSDDM 390
Query: 91 -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---SSVTAEEV 140
I+ E+E HPDV + AVIG+P + G++ A +V + + + AE +
Sbjct: 391 IVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERL 450
Query: 141 KQFV 144
+ FV
Sbjct: 451 QDFV 454
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 61.7 bits (150), Expect = 5e-12
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 45 GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG--------THFIIS--- 92
GE+ +KG ++ GY + E T + GW +TGD+ +G IIS
Sbjct: 293 GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGE 351
Query: 93 ---PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
P E+E++ QHP +++ V+ P +G++P A +V
Sbjct: 352 NIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 61.7 bits (150), Expect = 6e-12
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 37 VQLPDGKTGELCLKGD---VFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT-HFI- 90
+LPDG+ GEL L+ D F GY E T E + W HTGD R DG F+
Sbjct: 362 QELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNL-WFHTGDRVVRDADGWFRFVD 420
Query: 91 ------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
IS E+E + HP V AV +P ++ + A VV + +++
Sbjct: 421 RIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPV 480
Query: 139 EVKQFVEFPR 148
+ + E PR
Sbjct: 481 ALVRHCE-PR 489
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 61.5 bits (150), Expect = 6e-12
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 19/122 (15%)
Query: 38 QLPDGKTGEL-CLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHF------- 89
++P G G + G F GY + K+++D G L +GD+ Y DG F
Sbjct: 396 EVPRGVVGRIFVGNGFPFEGYTDG--RDKQIID--GLLSSGDVGYFDEDGLLFVDGRDDD 451
Query: 90 -IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
I+S P E+E + HPDV + AVIG+ + FG+ A VV P +++ + +K
Sbjct: 452 MIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKD 511
Query: 143 FV 144
+V
Sbjct: 512 YV 513
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 61.5 bits (150), Expect = 6e-12
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 14 KATLTGKHFQEHNAIKIIDPVTSVQLPD-GKTGELCLKGDVFLGYRNKVEATKEML---D 69
A+ TGK + ++D S P G+ G + G V LGY E T + D
Sbjct: 185 GASATGKFELGPDT-VVLDEDGSEVPPGSGEVGWIARGGRVPLGYYKDPEKTAKTFREID 243
Query: 70 DDGWLHTGDLAYRLPDGTHFII---SPC-----------ELESIFRQHPDVEDVAVIGIP 115
+ GD A DGT ++ S C E+E + HPDV D V+G+P
Sbjct: 244 GVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVP 303
Query: 116 HDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
+ +G+ AVV + + + E++
Sbjct: 304 DERWGQRVVAVVQLRAGAGLDLAELRDHC 332
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 61.4 bits (149), Expect = 9e-12
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 20/103 (19%)
Query: 45 GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII---------SPC 94
GE+C++G +F GY E T+E++ D GW HTGD+ LP+G II S
Sbjct: 466 GEICVRGKCLFSGYYKNPELTEEVMKD-GWFHTGDIGEILPNGVLKIIDRKKNLIKLSQG 524
Query: 95 E------LESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
E LE+++ Q+P VED+ V G D F + AVVVP
Sbjct: 525 EYVALEYLENVYGQNPIVEDIWVYG---DSFKSMLVAVVVPNE 564
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 60.0 bits (146), Expect = 3e-11
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 16/76 (21%)
Query: 45 GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIIS----------- 92
GE+ L+G +F GY + E T+E+LD+DGW HTGD+ +GT II
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLG 567
Query: 93 ---PCE-LESIFRQHP 104
E LE+++ Q+
Sbjct: 568 EYIALEALEALYGQNE 583
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 59.6 bits (145), Expect = 3e-11
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 38 QLPDGKTGELCLKGD-VFLGYRNKVEATKE-MLDDDGWL-------HTGDLAYRLPDGT- 87
+P G GEL + G V GY N+ E T E + D TGDL LPDG
Sbjct: 313 PVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNL 372
Query: 88 HFI-------------ISPCELESIFRQHPDVEDVAV 111
F+ I E+E+ +HP V + V
Sbjct: 373 EFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 58.9 bits (143), Expect = 5e-11
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 45 GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 90
GE+C+ G VF+GY N E T+E +D+DGWLH+GDL + DG +I
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYI 437
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 58.1 bits (141), Expect = 9e-11
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 21/135 (15%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLK--GDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
A+ D ++ D GEL F GY N EAT E + G +GDLAYR
Sbjct: 334 AVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRH-GMYWSGDLAYRDA 392
Query: 85 DGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
DG +I +S +E I +HP + VAV +P + G+ A +V
Sbjct: 393 DG--WIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALV 450
Query: 129 PKPNSSVTAEEVKQF 143
+ ++ + F
Sbjct: 451 LRDGATFDPDAFAAF 465
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 57.8 bits (140), Expect = 1e-10
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 45 GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII------------ 91
GE+C++G +F GY T+E++D+DGWLHTGD+ LP G II
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 518
Query: 92 ---SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN--------SSVTAEEV 140
+P ++E+++ + V V G D AVVV P + E++
Sbjct: 519 EYIAPEKIENVYAKCKFVAQCFVYG---DSLNSSLVAVVVVDPEVLKAWAASEGIKYEDL 575
Query: 141 KQFVEFPR 148
KQ PR
Sbjct: 576 KQLCNDPR 583
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 57.8 bits (140), Expect = 1e-10
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
I IIDP G+ GE+ ++ +F+GY E T E+ D G+ HTGD A+
Sbjct: 364 IDIIDPDGK-SCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHD-GYYHTGDTAW 421
Query: 82 RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
DG + + I P E+ES QHP V + AV G+P + G++ A +
Sbjct: 422 MDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATI 481
Query: 128 VPKPNSSVTAEEVKQFVEFPRK 149
V + E K+ + +K
Sbjct: 482 VLTKGYEPSEELKKELQDHVKK 503
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 57.6 bits (140), Expect = 1e-10
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 72 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 117
G+ TGD A R DG ++I + E+ES HP V + AV+G P +
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522
Query: 118 VFGELPAAVVVPKPN---SSVTAEEVKQFVE 145
V GE A V K S +E+K+ V
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDELRKELKKHVR 553
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 57.2 bits (139), Expect = 2e-10
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 23/129 (17%)
Query: 40 PDGKTGELCLKGDV---FLGYRNKVEATKEMLDD-----DGWLHTGDLAYRLPDG-THFI 90
P G+ G L + F GY + K++L D D + +TGDL R G +F+
Sbjct: 278 PPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFV 337
Query: 91 -------------ISPCELESIFRQHPDVEDVAVIGIP-HDVFGELPAAVVVPKPNSSVT 136
+S E+E + +HP VE+ V G+ G A + P ++
Sbjct: 338 DRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFD 397
Query: 137 AEEVKQFVE 145
+ ++
Sbjct: 398 PQAFAAHLD 406
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 57.3 bits (138), Expect = 2e-10
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 19/137 (13%)
Query: 24 EHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
E + + + DP + LP G+ GEL ++G +V GY N+ E + E D +L TGD+ Y
Sbjct: 375 ELDVVSLDDP--TKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYM 431
Query: 83 LPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
DG F++ P +E +HP V++V VIGIP GE A V
Sbjct: 432 DTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVK 491
Query: 129 PKPNSS-VTAEEVKQFV 144
+P + + +E++ F+
Sbjct: 492 LRPGAKPFSLDELRAFL 508
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 56.9 bits (138), Expect = 2e-10
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 37 VQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT-HF----- 89
+ +P +TG + ++ + LGY ++LD G T DL Y G H
Sbjct: 294 ITIPANQTGNITIQAQSLALGY------YPQILDSQGIFETDDLGYLDAQGYLHILGRNS 347
Query: 90 --IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
II+ P E+E+ V+DV V+G+P +GE+ A+ VPK + S++ EE+K
Sbjct: 348 QKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPK-DPSISLEELK 406
Query: 142 Q 142
Sbjct: 407 T 407
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 56.3 bits (136), Expect = 4e-10
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 15 ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGW 73
T G+ + ++++D + P G+TG L +G F GY E D +G+
Sbjct: 350 FTTQGRPMSPDDEVRVVDDHGNPVAP-GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGF 408
Query: 74 LHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 119
+TGDL P+G + I+ E+E++ HP V D A++ +P ++
Sbjct: 409 YYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELL 468
Query: 120 GELPAAVVVPKPNSSVTAEEVKQFV 144
GE A +V + ++ A ++++F+
Sbjct: 469 GEKSCAFIVVRD-PALKAAQLRRFL 492
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 56.5 bits (137), Expect = 4e-10
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 27/130 (20%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH--------TGDLAYRLPDGT-- 87
+P G GEL + G V GY + E T E + + TGDL R DG
Sbjct: 289 VPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLE 348
Query: 88 ------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNS 133
F I E+E+ R P V + AV+ D G+ L A +V P +
Sbjct: 349 YLGRIDDQVKVRGFRIELGEIEAALRSIPGVAE-AVVVAIGDAAGDRQL-VAYIVADPGA 406
Query: 134 SVTAEEVKQF 143
++ E+++
Sbjct: 407 AIDIEDLRAR 416
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 56.2 bits (136), Expect = 5e-10
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 19 GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
GK H I+I + LP+ G +C++G + GY E+ +L DGWL TG
Sbjct: 388 GKALPGH-EIEIRNEAGMP-LPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTG 444
Query: 78 DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVE--DVAVIGIPHDVFGE 121
DL Y L DG +I I P ++E I Q P++ D A I + GE
Sbjct: 445 DLGYLL-DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GE 502
Query: 122 LPAAVV 127
+V
Sbjct: 503 KIVLLV 508
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 55.9 bits (135), Expect = 6e-10
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
+ G+ GEL +G GY E D DG+ +GDL R PDG +
Sbjct: 380 VAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQ 439
Query: 91 -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
I+ E+E++ +HP V D A++ +P ++ GE A +V K + A ++++F
Sbjct: 440 INRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE-PPLRAAQLRRF 498
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 54.5 bits (132), Expect = 2e-09
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 39 LPDGKTGELCLKG---DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH-FI---- 90
LP + G L +K + G N E + W +GD AY DG F
Sbjct: 397 LPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAG-DWYVSGDSAYMDEDGYFWFQGRVD 455
Query: 91 ---------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE--- 138
+ P E+ES +HP V + VIG P V GE+ A V +P + E
Sbjct: 456 DVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKE 515
Query: 139 EVKQFV 144
E++ FV
Sbjct: 516 EIRGFV 521
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 53.0 bits (128), Expect = 6e-09
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 34/145 (23%)
Query: 28 IKII----DPVTSVQ----LPDGKTGELCLKGDVFL-GYRNKVEATKE--MLDDDG--WL 74
++II P+ L G+ GE+ + G + Y N+ EAT+ + D G W
Sbjct: 363 VRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWH 422
Query: 75 HTGDLAY-----RL------------PDGTHFIISPCELESIFRQHPDVEDVAVIGIPHD 117
GDL Y RL GT + I PCE IF HP V+ A++G+
Sbjct: 423 RMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTI-PCE--RIFNTHPGVKRSALVGVGVP 479
Query: 118 VFGELPAAVVVPKPNSSVTAEEVKQ 142
+ P V +P + + + Q
Sbjct: 480 G-AQRPVLCVELEPGVACSKSALYQ 503
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 52.7 bits (127), Expect = 7e-09
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
I+I+D V LPD G + +KGD V GY N EATK+ + DGWL TGDL + L +
Sbjct: 324 EIRIVDDAGEV-LPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGF-LRN 381
Query: 86 GTHFIISPCELESIFRQ------HPDVEDVA--VIGIPHDVFGELPAAVVVPKPNSSVTA 137
G +I+ + I H D+E VA V GI +L + +
Sbjct: 382 G-RLVITGRAKDIIIVNGQNYYPH-DIERVAEQVEGI------KLGRVAACGVYDEKEQS 433
Query: 138 EEVKQFVEFPRK 149
EEV FVE+ +
Sbjct: 434 EEVVIFVEYRQS 445
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 52.9 bits (127), Expect = 7e-09
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 61 VEATKEMLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDV 106
VE + DGWL TGD+ DG I I +LE+ P+V
Sbjct: 419 VEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEV 478
Query: 107 EDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
+ AVIG P D +GE P AV V P T E
Sbjct: 479 VECAVIGYPDDKWGERPLAVTVLAPGIEPTRE 510
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 52.7 bits (126), Expect = 8e-09
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 71 DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 116
DG TGD+ Y G FI+ P +E+ HP V D AVIG+P
Sbjct: 395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPD 454
Query: 117 DVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
+ FG AA VV P S V A +++ +++
Sbjct: 455 ERFGHRLAAFVVLHPGSGVDAAQLRDYLK 483
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 52.2 bits (126), Expect = 9e-09
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEM-LDDDGWLHTGDLAYRLP 84
++I+ P T +LP G+ G L ++G +V GY N E T E+ + DGW TGD+
Sbjct: 321 EVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDE 380
Query: 85 DGTHFI--------------ISPCELESIFRQH-PDVEDVAVIGIPHDVFGELPAAVVVP 129
DG I +S +E + + P+ A + +P + GE +
Sbjct: 381 DGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIVLLTTT 440
Query: 130 KPNSSVTAEEVKQFV 144
+ EE+ +
Sbjct: 441 ---EDLDPEELNAIL 452
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 52.3 bits (126), Expect = 1e-08
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
AI+I+D ++ LP+G+ G L ++G V GY EA E +DGW TGDL + L D
Sbjct: 384 AIRIVDEDGAL-LPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGF-LHD 441
Query: 86 GTHFI--------------ISPCELESIFRQHPDVE 107
G I E+E+ Q P VE
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVE 477
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 52.4 bits (125), Expect = 1e-08
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 21 HFQEHNAIKIIDPVTSVQLPDGKTGE-LCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGD 78
+++ D DGK + LKG + GY EAT+ L DG+ TGD
Sbjct: 338 IPLV--RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 395
Query: 79 LAYRLPDG-THF-------------IISPCELESIFRQHPDVEDVAVIGIPHDVFGELPA 124
+A +G IS +LE+ HP V++ AV+ IPH + E P
Sbjct: 396 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 455
Query: 125 AVVVPKPNSSVTAEEVKQF 143
AVVVP+ T EE+ +
Sbjct: 456 AVVVPR-GEKPTPEELNEH 473
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 51.9 bits (124), Expect = 1e-08
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Query: 32 DPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 90
P P G L +K LGY N E T E+L D GW++TGDL R DG +I
Sbjct: 362 GPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLID-GWVNTGDLLERREDGFFYI 420
Query: 91 --------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN-SSV 135
I+P E++ I V + A IP + FG L VV
Sbjct: 421 KGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDES 480
Query: 136 TAEEVKQ 142
A +K
Sbjct: 481 AARALKH 487
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 51.9 bits (125), Expect = 2e-08
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
TGD A R DG +I + E+ES HP V + AV+GIP D+ G+
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538
Query: 122 LPAAVVVPKPN---SSVTAEEVKQFV 144
A V K +E+++ V
Sbjct: 539 AIYAFVTLKDGYEPDDELRKELRKHV 564
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 51.8 bits (124), Expect = 2e-08
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 20/107 (18%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII------ 91
L D GE+CL+G+ +F GY + + T+E+L D GW HTGD+ P+G II
Sbjct: 460 LSDVPRGEICLRGNTLFSGYHKRQDLTEEVLID-GWFHTGDIGEWQPNGAMKIIDRKKNI 518
Query: 92 ---SPCE------LESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
S E LE+ + + P + + V G + F AVVVP
Sbjct: 519 FKLSQGEYVAVENLENTYSRCPLIASIWVYG---NSFESFLVAVVVP 562
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 51.2 bits (123), Expect = 2e-08
Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 24/127 (18%)
Query: 28 IKIID-PVTSVQ----LPDGKTGELCLKGD-VFLGYRNKVEAT---KEMLDDDGWLHTGD 78
I I D P+ S LP G+ GE+ + G V Y N+ EAT K + W GD
Sbjct: 277 IPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGD 336
Query: 79 LAYRLPDG--------THFIISPCEL------ESIFRQHPDVEDVAVIGIPHDVFGELPA 124
L Y G H + + E +F +HP V A++G+ + P
Sbjct: 337 LGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-GKPGTQAPV 395
Query: 125 AVVVPKP 131
VV P P
Sbjct: 396 LVVEPMP 402
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 50.3 bits (121), Expect = 5e-08
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEML---DDDGWLHTGDLAYR 82
A++I+DP T +LP G+ G + + G V GY E T E++ D GW TGD +
Sbjct: 970 AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029
Query: 83 LPDGTHFII 91
DG I
Sbjct: 1030 DEDGFLTIT 1038
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 50.4 bits (121), Expect = 5e-08
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 33/131 (25%)
Query: 33 PVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG------ 86
P+ VQ+ GE+ ++G + LGY + AT D W TGDL + +G
Sbjct: 293 PLPHVQVSIANDGEILVRGSLMLGYLGEPPAT------DDWWATGDLGHLDEEGYLYING 346
Query: 87 --THFII-------SPCELESIFRQHPDVEDVAVIGIPHDVFGE-LPA--AVVVPKPNSS 134
+ II SP +ES +Q P + VFG+ P A++VP PN
Sbjct: 347 RKKNLIITSFGRNVSPEWVESELQQAPAIAQAV-------VFGDAQPFLVALIVPAPN-- 397
Query: 135 VTAEEVKQFVE 145
++ ++++ V+
Sbjct: 398 ISDDQLEAAVQ 408
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 50.0 bits (120), Expect = 7e-08
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 38 QLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------ 90
LP G+ G L +G F GY + D +G+ +GDL PDG +I
Sbjct: 374 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDG--YITVVGRE 431
Query: 91 ----------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
I+ E+E++ +HP V A++ + ++ GE A +V K
Sbjct: 432 KDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVK 481
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 50.0 bits (119), Expect = 8e-08
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT---------- 87
LP G GEL + G + LGY N+ + T E TGDLA L DG
Sbjct: 562 LPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQ 621
Query: 88 ----HFIISPCELESIFRQHP 104
F I E+E+ + P
Sbjct: 622 VKIRGFRIELGEIEAALAEQP 642
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 49.3 bits (118), Expect = 1e-07
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 23/107 (21%)
Query: 56 GYRNKVEATKEMLDDDGWLHTGDLAY----------RLPDGTHFIIS-------PCELES 98
GYRN V+ + + GW T DL R D IS P +E+
Sbjct: 220 GYRNPVD--PDPFAEPGWFRTDDLGALDDGVLTVLGRADD----AISTGGLTVLPQVVEA 273
Query: 99 IFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
HP V D AV G+P D G+ A VV + T E ++ V
Sbjct: 274 ALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVA 320
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 49.0 bits (117), Expect = 1e-07
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 25 HNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
H +KI +S + G + +G V LGY + T +L +DGWL TGD+ +
Sbjct: 372 HVELKIGLDESS------RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWID 425
Query: 84 PDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
G ++I P E+E++ QHP V V V+G+P E+ A V
Sbjct: 426 KAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACV 483
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 48.0 bits (115), Expect = 3e-07
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 27 AIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKE----MLDD------DG-WL 74
++I+DP T ++ P G GE+ + GD V GY K E T+ L D +G WL
Sbjct: 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWL 439
Query: 75 HTGDLAYRLPDGTHFII 91
TGDL + + +G FI+
Sbjct: 440 RTGDLGF-ISEGELFIV 455
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 46.6 bits (110), Expect = 9e-07
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 45 GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQH 103
GE+C++G +F GY + + TKE+L D GWLHTGD+ P+G+ II ++IF+
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLID-GWLHTGDVGEWQPNGSMKIID--RKKNIFKLS 525
Query: 104 PDVEDVAVIGIPHDVFGELPA 124
E VAV I +++GE+ A
Sbjct: 526 QG-EYVAVENI-ENIYGEVQA 544
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 45.9 bits (109), Expect = 2e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 19 GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEAT-KEMLDDDG--WL 74
G+ H A+ I+DP + L D + GE+ G + GY EA+ K ++ DG WL
Sbjct: 373 GRSQPGH-AVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWL 431
Query: 75 HTGDLAYRLPDGTHFI 90
TGDL + L DG F+
Sbjct: 432 RTGDLGF-LRDGELFV 446
Score = 32.1 bits (73), Expect = 0.11
Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 36/133 (27%)
Query: 40 PDGKTGELCLKGD-VFLGY------------RNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
P G GELC+ G V GY + A E L TGDLA R DG
Sbjct: 4062 PLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERL-----YRTGDLARRRSDG 4116
Query: 87 T--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131
H + I E+E+ + +V + AV + V G+ +VP
Sbjct: 4117 VLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAV-AVQEGVNGKHLVGYLVPHQT 4175
Query: 132 --NSSVTAEEVKQ 142
E +KQ
Sbjct: 4176 VLAQGALLERIKQ 4188
Score = 31.7 bits (72), Expect = 0.15
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 22/98 (22%)
Query: 39 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLH-------TGDLAYRLPDGT--- 87
+P G TGEL + G + GY ++ T E D + TGDL DG
Sbjct: 2527 VPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEY 2586
Query: 88 -----------HFIISPCELESIFRQHPDVEDVAVIGI 114
F I E+ES +HP V + V+ +
Sbjct: 2587 VGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLAL 2624
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 45.6 bits (108), Expect = 2e-06
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 34/154 (22%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
++IID +V LP G G++ ++ +F Y + E T + D ++ TGD
Sbjct: 354 VQIIDDNGNV-LPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGI 411
Query: 82 RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
DG + + I P E+ES +HP V + AV+ P + GE+ A V
Sbjct: 412 MDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFV 471
Query: 128 VPKP-----NSSVTAEEVKQFV-------EFPRK 149
V P + +E+++ V ++PRK
Sbjct: 472 VLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRK 505
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 45.5 bits (109), Expect = 2e-06
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
TGD A R DG ++I + E+ES HP V + AV+G P D+ G+
Sbjct: 487 TGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQ 546
Query: 122 LPAAVVVPKPNSSVTAEEVKQFVEFPRK 149
A V K + E K+ + RK
Sbjct: 547 GIYAFVTLKGGEEPSDELRKELRNWVRK 574
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 45.0 bits (106), Expect = 4e-06
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 38 QLPDGKTGELCLKGDVF-LGYRNKVEATKEM----------------LDDDGWLHTGDLA 80
+LP G+ G + + D Y N E T +D+DG+L+ D
Sbjct: 342 ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRK 401
Query: 81 YRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV 140
+ I P E E+ HP V DVAVIG+P GE AV+ + E
Sbjct: 402 SFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELA 461
Query: 141 KQFVEFPR 148
++ +++ R
Sbjct: 462 RELIDYTR 469
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 43.7 bits (104), Expect = 1e-05
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 68 LDDDGWLHTGDLAYRLPDG---------THFI-----ISPCELESIFRQHPDVEDVAVIG 113
++D+GW T D +G F I P E+E + QHP V+ V V+
Sbjct: 328 VNDEGWFATRDRG-EWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVP 386
Query: 114 IPHDVFGELPAAVVVPKPNSSVTA 137
+ FG+ P AVV ++V
Sbjct: 387 VADAEFGQRPVAVVESDSEAAVVN 410
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 42.8 bits (101), Expect = 2e-05
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 20/80 (25%)
Query: 30 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML------------------DD 70
I+DP T +LPDG+ GE+ L GD + GY + E T+ DD
Sbjct: 415 IVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADD 474
Query: 71 DGWLHTGDLAYRLPDGTHFI 90
WL TGDL L DG +I
Sbjct: 475 GTWLRTGDLGVYL-DGELYI 493
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 42.5 bits (100), Expect = 2e-05
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 41 DGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH----------- 88
G+ GEL + G Y N T++ W +GD R DG++
Sbjct: 353 AGEPGELLISGPSSATMYWNNRAKTRDTFQG-EWTRSGDKYVRNDDGSYTYAGRTDDMLK 411
Query: 89 ---FIISPCELESIFRQHPDVEDVAVIGIPHDVFGEL-PAAVVVPKPNSSVTA---EEVK 141
+SP E+ES QHP V + AV+G+ D G + P A +V +P + E+K
Sbjct: 412 VSGIYVSPFEIESALIQHPAVLEAAVVGV-EDEDGLIKPKAFIVLRPGQDIDTALETELK 470
Query: 142 QFVE 145
+ V+
Sbjct: 471 EHVK 474
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 42.2 bits (100), Expect = 3e-05
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 30 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKE-MLDDDGWL--------HTGDL 79
++DP +P G GELC+ G V GY N+ E T E + D WL TGDL
Sbjct: 271 VLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330
Query: 80 AYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVI 112
L DG+ F+ I E+E++ R P V AV+
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVV 377
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 41.6 bits (98), Expect = 5e-05
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 30 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML-----------------DDD 71
I+DP T+ +LPDG+ GE+ L G+ + GY K E T DD
Sbjct: 404 IVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463
Query: 72 GWLHTGDL 79
W+ TGD
Sbjct: 464 LWVRTGDY 471
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 41.5 bits (98), Expect = 6e-05
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++++D V LP G + L+G+ V GY ++ D DGWL TGDL Y +G
Sbjct: 371 VRVVDEDGQV-LPPRGVGVIELRGESVTPGYLT-MDGFIPAQDADGWLDTGDLGYLTEEG 428
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 40.5 bits (95), Expect = 1e-04
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 26/127 (20%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEML------DDDGWLH-TGDLAYRLPDGT--- 87
+P G GEL L G + GY N+ T E L+ TGDLA DG
Sbjct: 1913 VPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEY 1972
Query: 88 -----H------FIISPCELESIFRQHPDVEDVAVIGIPHD-VFGELPAAVVVPKPNSSV 135
H F I E+E+ R+ V + V I D G+ A VVP + +
Sbjct: 1973 LGRIDHQVKIRGFRIELGEIEARLREQGGVREAVV--IAQDGANGKQLVAYVVPT-DPGL 2029
Query: 136 TAEEVKQ 142
++ Q
Sbjct: 2030 VDDDEAQ 2036
Score = 34.8 bits (80), Expect = 0.012
Identities = 35/115 (30%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 40 PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDD------GWLH-TGDLAYRLPDGT---- 87
P G GEL + G + GY + T E D G L+ TGDLA DG
Sbjct: 3431 PVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYL 3490
Query: 88 ----H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
H F I E+E+ QHP V + V+ +L A VV P
Sbjct: 3491 GRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQ 3545
Score = 30.9 bits (70), Expect = 0.24
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 26/130 (20%)
Query: 39 LPDGKTGELCLKGD-VFLGY--RNKVEATKEMLD----DDGWLH-TGDLAYRLPDGT--- 87
+P G GEL + G + GY R + A + + D D G L+ TGDLA DG
Sbjct: 849 VPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEY 908
Query: 88 -----H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS--- 133
H F I E+E+ P V + V+ P D +L A +V
Sbjct: 909 LGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADGAE 968
Query: 134 -SVTAEEVKQ 142
T +E+K
Sbjct: 969 HQATRDELKA 978
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 40.3 bits (95), Expect = 2e-04
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 33 PVTSVQL-PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
P T ++L P+G E+ +KG V GY E T E D++G+ GD A R D
Sbjct: 354 PGTELKLVPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD-AVRFVD 407
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 39.4 bits (92), Expect = 3e-04
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 26/114 (22%)
Query: 42 GKTGELCLKGD-VFLGYRNKVEATKEML------DDDGWLH-----TGDLAYRLPDG-TH 88
G+ GEL +G V +GY N E T E + L +GD R +G +
Sbjct: 354 GEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLY 413
Query: 89 FI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
F+ +SP E+E + V + G+P G+ VV P
Sbjct: 414 FVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 39.1 bits (92), Expect = 4e-04
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 33 PVTSVQL-P-DGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
P V+L P GK E+ +KG V GY E T E D++G+ +GD A R D
Sbjct: 399 PGCEVKLVPVGGKL-EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD-AVRFVD 452
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 39.2 bits (92), Expect = 4e-04
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 76 TGDLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGE 121
T D R DG +FI+ E+E HP V +VAV+G+ + G+
Sbjct: 477 TFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536
Query: 122 LPAAVVVPKPNSSVTAEEVKQFVE 145
+ A VVPK + S+ E + +E
Sbjct: 537 VAVAFVVPKDSDSLADREARLALE 560
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 38.1 bits (89), Expect = 7e-04
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 74 LHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 119
+ T DL Y+ GT HF+ + P E+E + + P V++ V V
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA 352
Query: 120 GELPAAVVV 128
GE A V+
Sbjct: 353 GERVKAKVI 361
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 38.4 bits (89), Expect = 8e-04
Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEML-----DDDG--WLHTGDLAYRLPDGT--- 87
LP G GEL L G+ V GY + T E G TGDLA DG
Sbjct: 4888 LPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDY 4947
Query: 88 -----H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
H F I E+E+ R+HP V + VI V +L VVP+ +
Sbjct: 4948 LGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQL-VGYVVPQDPALAD 5006
Query: 137 AEEVK 141
A+E +
Sbjct: 5007 ADEAQ 5011
Score = 36.5 bits (84), Expect = 0.003
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 23/125 (18%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH--------- 88
L G GEL L G+ + GY N+ T E D + +G+ YR D
Sbjct: 2340 LAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEY 2399
Query: 89 ------------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
F I E+E+ + HP V + V+ G+ A VVP +
Sbjct: 2400 LGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-DGASGKQLVAYVVPDDAAEDL 2458
Query: 137 AEEVK 141
E++
Sbjct: 2459 LAELR 2463
Score = 33.0 bits (75), Expect = 0.052
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 25/123 (20%)
Query: 40 PDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGW------LHTGDLAYRLPDGT----- 87
P G GEL L G+ GY N+ T E D + TGDLA DG
Sbjct: 3385 PVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIG 3444
Query: 88 ---------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
F I E+E+ +HP V + V+ V G A VVP+ + E
Sbjct: 3445 RVDHQVKIRGFRIELGEIEARLLEHPWVREAVVL----AVDGRQLVAYVVPEDEAGDLRE 3500
Query: 139 EVK 141
+K
Sbjct: 3501 ALK 3503
Score = 27.2 bits (60), Expect = 4.0
Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 25/124 (20%)
Query: 40 PDGKTGELCLKGD-VFLGYRNKVEATKE------MLDDDGWLHTGDLAYRLPDGT----- 87
P G GEL L G + GY + T E + + TGDLA DG
Sbjct: 847 PVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAG 906
Query: 88 ---H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
H I E+E+ +HP V + AV+ V G+ VV + E
Sbjct: 907 RIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLA----VDGKQLVGYVVLESEGGDWRE 962
Query: 139 EVKQ 142
+K
Sbjct: 963 ALKA 966
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 36.0 bits (83), Expect = 0.004
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 78 DLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGELP 123
D R DG FI+ E+E HP V +VAV+G+ ++ G++
Sbjct: 478 DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVA 537
Query: 124 AAVVVPKPNSSVTAEEVKQFVE 145
+ K + S VE
Sbjct: 538 VVFAILKESDSAGDAHDPHAVE 559
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 33.9 bits (78), Expect = 0.019
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 45 GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
GEL +K D +F GY + E TK +DG+ TGD+ +G+
Sbjct: 542 GELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGS 585
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 34.1 bits (78), Expect = 0.021
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 72 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 117
G+ +GD R DG +++ I E+ES HP + AV+GI H+
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572
Query: 118 VFGE 121
V G+
Sbjct: 573 VKGQ 576
>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK
catalyzes the first step in the aromatic degradation
pathway, by converting phenylacetic acid (PA) into
phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has
been found in proteobacteria as well as gram positive
prokaryotes. The enzyme is specifically induced after
aerobic growth in a chemically defined medium containing
PA or phenylalanine (Phe) as the sole carbon source.
PaaKs are members of the adenylate-forming enzyme (AFE)
family. However, sequence comparison reveals divergent
features of PaaK with respect to the superfamily,
including a novel N-terminal sequence.
Length = 424
Score = 33.3 bits (76), Expect = 0.036
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 16 TLTGKHFQE-HNAIKIIDPVTSVQLPDGKTGELCL 49
T G E H +IIDP T LPDG+ GEL
Sbjct: 247 TKDGPTIWEDHFYPEIIDPETGEPLPDGEIGELVF 281
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 32.8 bits (75), Expect = 0.043
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 33/151 (21%)
Query: 30 IIDPVTS--VQLPDGKTGELCLK-----GDVFLGYRNKVEAT-KEMLDD-----DGWLHT 76
I DP T V+ P G+ GE+ + ++F GY +AT ++L D D W T
Sbjct: 283 IRDPKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRT 342
Query: 77 GDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGIP---HDVF 119
GDL + DG +F+ +S E+ + P V + V G+ +D
Sbjct: 343 GDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPGYD-- 400
Query: 120 GELPAAVVVPKPNSSVTAEEVKQ-FVEFPRK 149
G A + + +S+V E K + RK
Sbjct: 401 GRAGCAAITLEESSAVETEFTKNLLAKLARK 431
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 31.7 bits (72), Expect = 0.11
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEM-LDDDGWLHTGDLAYRLPD 85
+ I+ T V + G+TG + +G +F GY + + L + W TGDL Y
Sbjct: 364 VLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH 423
Query: 86 GTHFI--------------ISPCELESIFRQH---PDVED---VAVIGIPHD 117
G F+ +S LESI + + + V G+P +
Sbjct: 424 GELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE 475
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 31.2 bits (71), Expect = 0.16
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 33 PVTSVQL---PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 88
P+ V+L P G E+ +KG V GY E T D++G+ YRL D
Sbjct: 409 PLPGVELKLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGF-------YRLGDAAR 461
Query: 89 FI 90
F+
Sbjct: 462 FV 463
>gnl|CDD|219113 pfam06629, MipA, MltA-interacting protein MipA. This family
consists of several bacterial MltA-interacting protein
(MipA) like sequences. As well as interacting with the
membrane-bound lytic transglycosylase MltA, MipA is
known to bind to PBP1B, a bifunctional murein
transglycosylase/transpeptidase. MipA is considered to
be a structural protein mediating the assembly of MltA
to PBP1B into a complex.
Length = 226
Score = 30.8 bits (70), Expect = 0.18
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 38 QLPDGKTGE-LCLKGDVFLGY-RNKVEATKEMLDD-DGWLHTGDLAYRLPDGTHFIISP 93
L D K LK G+ + E +++ + G++ LA G +SP
Sbjct: 77 GLDDRKATAVGGLKAAYDTGWGTVRAELEQDISNGSRGFVADIGLAATYDLGDRLSLSP 135
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 30.2 bits (69), Expect = 0.33
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 54 FLGYRNKVEATKEMLDD-----DGWLHTGDLAYRLPDG-THFI-------------ISPC 94
F GY + + K++L D D W +TGDL G F+ ++
Sbjct: 416 FDGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATT 475
Query: 95 ELESIFRQHPDVEDVAVIGIP 115
E+E+ P VE+ V G+
Sbjct: 476 EVENALSGFPGVEEAVVYGVE 496
>gnl|CDD|211782 TIGR03064, sortase_srtB, sortase, SrtB family. Members of this
transpeptidase family are, in most cases, designated
sortase B, product of the srtB gene. This protein shows
only distant similarity to the sortase A family, for
which there may be several members in a single bacterial
genome. Typical SrtB substrate motifs include NAKTN,
NPKSS, etc, and otherwise resemble the LPXTG sorting
signals recognized by sortase A proteins [Cell envelope,
Other, Protein fate, Protein and peptide secretion and
trafficking].
Length = 232
Score = 30.0 bits (68), Expect = 0.39
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 45 GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCEL-ESIFRQH 103
GE G +F+ YRNKV+ D + L+ + + D + F L + F +H
Sbjct: 100 GEESRAGSIFMDYRNKVDFE----DRNTILY----GHHMADNSMFGDLKKFLKQDFFNKH 151
Query: 104 PDVE 107
Sbjct: 152 KYFY 155
>gnl|CDD|151586 pfam11142, DUF2917, Protein of unknown function (DUF2917). This
bacterial family of proteins appears to be restricted
to Proteobacteria.
Length = 63
Score = 28.0 bits (63), Expect = 0.53
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 39 LPDGKTGELCLKGDVFLGYRNKVEA-----TKEMLDDDGWLHTGDLAYRLPDGTHFIISP 93
L G+ L + L +VE T+E DD WL GD + RLP G +S
Sbjct: 4 LAPGEAVSLRARAGTRL----RVEEGRVWLTREGDADDYWLQPGD-SLRLPRGERVWLSA 58
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 29.7 bits (67), Expect = 0.54
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 45 GELCLKG-DVFLGYRNKVEATKEM--LDDDG--WLHTGDLAYRLPDGTHFII 91
GE+ + G V LGY E T E+ +D+ G W +TGD+ PDG II
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEII 554
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 29.6 bits (66), Expect = 0.68
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 29 KIIDPV-TSVQLPDGKTGELCLKGDVFL-------GYRNKVEATKEMLDDDGWLHTGDLA 80
+++ P V PDG T ++GD+++ GY N+ ++ + ++GWL T D
Sbjct: 317 RVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDS---PVANEGWLDTRDRV 373
Query: 81 YRLPDG----------THFI----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 126
DG T I + P E+E + + V + AV+ + A
Sbjct: 374 CIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAF 433
Query: 127 VVP 129
+V
Sbjct: 434 LVA 436
>gnl|CDD|226898 COG4509, COG4509, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 244
Score = 29.0 bits (65), Expect = 0.83
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 45 GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELE-SIFRQH 103
GE G +F+ YRNKV LD +T + + D + F P L+ S F +H
Sbjct: 103 GEHSRAGSIFMDYRNKVTF----LDK----NTIIYGHHMADNSMFAELPNFLKKSFFNKH 154
Query: 104 PDVE 107
+
Sbjct: 155 KEFS 158
>gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase.
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the
first step in aromatic catabolism of phenylacetic acid
(PA) into phenylacetyl-CoA (PA-CoA). Often located in a
conserved gene cluster with enzymes involved in
phenylacetic acid activation (paaG/H/I/J),
phenylacetate-CoA ligase has been found among the
proteobacteria as well as in gram positive prokaryotes.
In the B-subclass proteobacterium Azoarcus evansii,
phenylacetate-CoA ligase has been shown to be induced
under aerobic and anaerobic growth conditions. It
remains unclear however, whether this induction is due
to the same enzyme or to another isoenzyme restricted to
specific anaerobic growth conditions [Energy metabolism,
Other].
Length = 422
Score = 29.0 bits (65), Expect = 0.89
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 23 QEHNAIKIIDPVTSVQLPDGKTGELCL 49
++H +IIDP T LPDG+ GEL
Sbjct: 252 EDHFYPEIIDPHTGEVLPDGEEGELVF 278
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 28.4 bits (64), Expect = 1.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 24 EHNAIKIIDPVTSVQLPDGKTGEL 47
+H +I+DP T QLPDG+ GEL
Sbjct: 266 DHFIFEIVDPETGEQLPDGERGEL 289
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain.
Catabolite gene activator protein (CAP) is a prokaryotic
homologue of eukaryotic cNMP-binding domains, present in
ion channels, and cNMP-dependent kinases.
Length = 120
Score = 27.4 bits (61), Expect = 1.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 89 FIISPCELESIFRQHPDVEDVAVIGI--PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146
+II E+E +++ D E+ ++G P D FGEL A++ ++ A +
Sbjct: 39 YIIVSGEVE-VYKVLEDGEEQ-IVGTLGPGDFFGEL--ALLTNSRRAASAAAVALELATL 94
Query: 147 PR 148
R
Sbjct: 95 LR 96
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 27.8 bits (62), Expect = 2.1
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 68 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 113
+D D W TGDL Y L DG + I P E+E + Q V + AV+
Sbjct: 392 IDPDDWFPTGDLGY-LVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVA 450
Query: 114 IPHDVFGELPAAVVVPK---PNSSVTAEEVKQFV 144
+ P V+ + P+ + EV Q V
Sbjct: 451 VGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRV 484
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 27.4 bits (61), Expect = 3.4
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 25/119 (21%)
Query: 38 QLPDGKTGELCLK-------GDVFLGYRNKVEATKEMLDD-DGWLHTGDLAYRLPDGTHF 89
+L + GE+ K F Y+N E K++ G+ ++GDL ++ +G +
Sbjct: 453 ELNVNEIGEVAFKLPMPPSFATTF--YKND-EKFKQLFSKFPGYYNSGDLGFKDENGYYT 509
Query: 90 IISPCE--------------LESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134
I+S + +E+ +HP V + IGI +P ++V K + S
Sbjct: 510 IVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQS 568
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 27.3 bits (61), Expect = 3.7
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 39 LPDGKTGELCLKGDVFL--GYRNKVEATKEMLDDDGWL------HTGDLAYRLPDGT--- 87
+P G G+L L G + L GY + + T D + TGD+A L DG
Sbjct: 797 VPPGVAGDLYLTG-IQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEY 855
Query: 88 -----------HFIISPCELESIFRQHPDVEDVAV 111
I E++ + PDVE
Sbjct: 856 LGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVT 890
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 26.8 bits (60), Expect = 3.9
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 55 LGYRNKVEATKEMLDDDG------WLHTGDLA--YRLPDGTH 88
Y +E + + DG +L G +A Y+ DG
Sbjct: 163 ADYGRTIEVYQGEITLDGEPREVDFLRLGRVALYYQTLDGKQ 204
>gnl|CDD|225749 COG3208, GrsT, Predicted thioesterase involved in non-ribosomal
peptide biosynthesis [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 244
Score = 26.9 bits (60), Expect = 4.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 52 DVFLGYRNKVEATKEMLDDDGWLH--TGDLAYRLPDGTHFIISPC--ELESIFRQH 103
F G ++ E +++ L W GD R+ DG HF ++ E+ + QH
Sbjct: 180 HAFGGEKDH-EVSRDELG--AWREHTKGDFTLRVFDGGHFFLNQQREEVLARLEQH 232
>gnl|CDD|237201 PRK12786, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 338
Score = 26.5 bits (59), Expect = 5.4
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 81 YRLPD-GTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEE 139
YR P GT + +L + R H V + E V V + +V AEE
Sbjct: 60 YRAPAPGTTGALPTAQLIAAARAH------GVDWVDTSGIRE----VTVTRAARTVDAEE 109
Query: 140 VKQFVE 145
+++ V
Sbjct: 110 IEEQVA 115
>gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter
pylori HP0827 protein and similar proteins. This
subfamily corresponds to the RRM of H. pylori HP0827, a
putative ssDNA-binding protein 12rnp2 precursor,
containing one RNA recognition motif (RRM), also termed
RBD (RNA binding domain) or RNP (ribonucleoprotein
domain). The ssDNA binding may be important in
activation of HP0827. .
Length = 78
Score = 25.3 bits (56), Expect = 5.5
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 74 LHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVI 112
L+ G+L Y + + +L+ +F Q +V VI
Sbjct: 2 LYVGNLPYNVTEE--------DLKDLFGQFGEVTSARVI 32
>gnl|CDD|173875 cd08510, PBP2_Lactococcal_OppA_like, The substrate binding
component of an ABC-type lactococcal OppA-like transport
system contains. This family represents the substrate
binding domain of an ATP-binding cassette (ABC)-type
oligopeptide import system from Lactococcus lactis and
other gram-positive bacteria, as well as its closet
homologs from gram-negative bacteria.
Oligopeptide-binding protein (OppA) from Lactococcus
lactis can bind peptides of length from 4 to at least 35
residues without sequence preference. The oligopeptide
import system OppABCDEF is consisting of five subunits:
two homologous integral membrane proteins OppB and OppF
that form the translocation pore; two homologous
nucleotide-binding domains OppD and OppF that drive the
transport process through binding and hydrolysis of ATP;
and the substrate-binding protein or receptor OppA that
determines the substrate specificity of the transport
system. The dipeptide (DppA) and oligopeptide (OppA)
binding proteins differ in several ways. The DppA binds
dipeptides and some tripeptides and also is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 residues) and
plays a role in recycling of cell wall peptides, which
precludes any involvement in chemotaxis. Most of other
periplasmic binding proteins are comprised of only two
globular subdomains corresponding to domains I and III
of the dipeptide/oligopeptide binding proteins. The
structural topology of these domains is most similar to
that of the type 2 periplasmic binding proteins (PBP2),
which are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 516
Score = 26.5 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 56 GYRNKVEATKEMLDDDGW-LHTGDLAYRLPDGTHFII 91
GY E K++LD+ G+ GD PDG I
Sbjct: 338 GYTYDPEKAKKLLDEAGYKDVDGDGFREDPDGKPLTI 374
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 26.4 bits (59), Expect = 6.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 107 EDVAVIGIPHDVFGEL 122
DVA+IG+ FGEL
Sbjct: 2 RDVAIIGVGQTKFGEL 17
>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus.
Dihydrodipicolinate reductase (DapB) reduces the
alpha,beta-unsaturated cyclic imine,
dihydro-dipicolinate. This reaction is the second
committed step in the biosynthesis of L-lysine and its
precursor meso-diaminopimelate, which are critical for
both protein and cell wall biosynthesis. The N-terminal
domain of DapB binds the dinucleotide NADPH.
Length = 122
Score = 25.7 bits (57), Expect = 6.3
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 102 QHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF 146
+ PD E VA + P A + VT + + +
Sbjct: 22 EAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLADA 66
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 26.4 bits (59), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 92 SPCELESIFRQHPDVEDVAVIGIPHD 117
SP ELE + R+ + VI IP D
Sbjct: 511 SPDELEPVLREALATDGPVVIDIPVD 536
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 26.6 bits (59), Expect = 6.9
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 54 FLGYRNKVEATKEMLDD-----DGWLHTGDLAYRLPDGTHFI--------------ISPC 94
F GY N+ K++ D D +GD+ G + +S
Sbjct: 326 FDGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTT 385
Query: 95 ELESIFRQHPDVEDVAVIG--IPHDVFGELPAAVVVPKPNSSV 135
E+E I +EDV V G +P AA+V P+ +
Sbjct: 386 EVEGILSNVLGLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDL 428
>gnl|CDD|173878 cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding
component of ABC-type thermophilic oligopeptide-binding
protein Hb8-like import systems, contains the type 2
periplasmic binding fold. This family includes the
substrate-binding domain of an ABC-type
oligopeptide-binding protein Hb8 from Thermus
thermophilius and its closest homologs from other
bacteria. The structural topology of this
substrate-binding domain is similar to those of DppA
from Escherichia coli and OppA from Salmonella
typhimurium, and thus belongs to the type 2 periplasmic
binding fold protein (PBP2) superfamily. The DppA binds
dipeptides and some tripeptides and is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 amino acid
residues) and plays a role in recycling of cell wall
peptides, which precludes any involvement in chemotaxis.
The type 2 periplasmic binding proteins are soluble
ligand-binding components of ABC or tripartite
ATP-independent transporters and chemotaxis systems.
Members of the PBP2 superfamily function in uptake of a
variety of metabolites in bacteria such as amino acids,
carbohydrate, ions, and polyamines. Ligands are then
transported across the cytoplasmic membrane energized by
ATP hydrolysis or electrochemical ion gradient. Besides
transport proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 482
Score = 26.1 bits (58), Expect = 7.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 61 VEATKEMLDDDGWLHTGDLAYRLPDGT 87
E K++LD+ GW D R DGT
Sbjct: 309 PEKAKQLLDEAGWKLGPDGGIREKDGT 335
>gnl|CDD|238135 cd00220, VMO-I, Vitelline membrane outer layer protein I (VMO-I)
domain, VMO-I is one of the proteins found in the outer
layer of the vitelline membrane of poultry eggs; VMO-I,
lysozyme, and VMO-II are tightly bound to ovomucin; this
complex forms the backbone of the outer layer; VMO-I
has three distinct internal repeats; all three repeats
are used to define the domain here; VMO-I has recently
been shown to synthesize N-acetylchito-oligosaccharides
from N-acetylglucosamine; may be a carbohydrate-binding
protein; member of the beta-prism-fold family.
Length = 177
Score = 25.8 bits (57), Expect = 8.0
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 15 ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGEL--CLKGDVFLGYRNKVEATKEMLDDDG 72
GK N + S + P G E+ C G V +G+ + E + DD G
Sbjct: 53 NPPDGKTSNSEN------EIISGEGPWGSWREIQWCPNGTVIVGFALRSEPEQGKGDDTG 106
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 25.9 bits (57), Expect = 9.2
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
+P L R+ + +GIPH+ F EL A +P
Sbjct: 45 NPEVLADWVRRRAG--ERLSLGIPHNWFLELRPASQMP 80
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 25.8 bits (57), Expect = 9.3
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGDVFLG------YRNKVEATK 65
K++ V S+ +P K +LC KGD + Y+ + + K
Sbjct: 13 KVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEK 55
>gnl|CDD|235172 PRK03906, PRK03906, mannonate dehydratase; Provisional.
Length = 385
Score = 25.9 bits (58), Expect = 9.8
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 73 WLHTGDLAYRLPDGT 87
W T DLAY LPDG+
Sbjct: 110 WTRT-DLAYELPDGS 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.417
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,853,004
Number of extensions: 723631
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 896
Number of HSP's successfully gapped: 198
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)