RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4966
(149 letters)
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 161 bits (410), Expect = 3e-48
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
+KI+DP T LP + GE+C++GD + GY N EAT +D +GWLHTGD+ Y D
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
FI ++P ELE++ HP++ D AV+G+ + GE+P A VV
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK 485
Query: 133 SSVTAEEVKQFVE 145
S T +E+KQ++
Sbjct: 486 SQATEDEIKQYIS 498
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 160 bits (408), Expect = 9e-48
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 15/133 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
K+ID T L + GE+C+KG + GY N EATKE++D++GWLHTGD+ Y +
Sbjct: 373 AKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
FI + P ELES+ QHP + D V G+P V GELP AVVV +
Sbjct: 433 HFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG 492
Query: 133 SSVTAEEVKQFVE 145
++T +EV +V
Sbjct: 493 KNMTEKEVMDYVA 505
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 160 bits (407), Expect = 1e-47
Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
K++D T L + GELC++G + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
FI ++P ELESI QHP++ D V G+P D GELPAAVVV +
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490
Query: 133 SSVTAEEVKQFVE 145
++T +E+ +V
Sbjct: 491 KTMTEKEIVDYVA 503
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 162 bits (413), Expect = 2e-47
Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 15/132 (11%)
Query: 29 KIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
KI+DP T L + GE+C++G + GY N AT E +D DGWLHTGD+ D
Sbjct: 414 KIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDE 473
Query: 88 HFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
FI ++P ELE++ HPD+ DVAV+ + + GE+P A VV +S
Sbjct: 474 LFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS 533
Query: 134 SVTAEEVKQFVE 145
++ ++VKQFV
Sbjct: 534 ELSEDDVKQFVS 545
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 145 bits (369), Expect = 2e-42
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
++ DP T +LP G G + +KG VF GY E TK DDG+ TGDL G
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERG 390
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
I + P E+ES P V + AVIG+PH FGE AVVV
Sbjct: 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG 450
Query: 133 SSVTAEEVKQFV 144
+++ +V +
Sbjct: 451 ATIDEAQVLHGL 462
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 143 bits (362), Expect = 3e-41
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML----DDDGWLHTGDLAYR 82
+K+I +L G++GE+ ++G +F GY + + +E + TGD+ +
Sbjct: 367 LKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426
Query: 83 LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
+G I+P ELE++ +H V DVAVIG P + GE+P A +V
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIV 486
Query: 129 PKPN--SSVTAEEVKQFV 144
KP V E++ ++V
Sbjct: 487 LKPEYRGKVDEEDIIEWV 504
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 137 bits (348), Expect = 2e-39
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 25 HNAIKIIDPVTSVQ--LPDGKTGELCLKG--DVFLGYRNKVEATKEMLDDDGWLHTGDLA 80
+ ++I+ V + +G+ GEL + F+GY N+ +AT E L D GW T D+A
Sbjct: 329 FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVA 387
Query: 81 YRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 126
P+GT I I P E+E + P V +V VIG+ +G+ A
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447
Query: 127 VVPKPNSSVTAEEVKQFV 144
VVP+ +++A+ + F
Sbjct: 448 VVPRLGETLSADALDTFC 465
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 135 bits (342), Expect = 2e-38
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 19 GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
G+ + IKI+D +P+G+ G L +G F GY E ++ D+D + ++G
Sbjct: 363 GRPISSDDEIKIVDEQYRE-VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 78 DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
DL R PDG + I+ E+E + HP+V A++ I + FGE
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKS 481
Query: 124 AAVVVPKPNSSVTAEEVKQFVE 145
A +V + + +E
Sbjct: 482 CAFIVSRNPELKAVVLRRHLME 503
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 134 bits (339), Expect = 4e-38
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 25 HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
+ ++D LP G+ GE+ L+G VF GY N AT+ + GW HTGD+
Sbjct: 329 WRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRFD 386
Query: 84 PDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
DG F + P E+E +QHP + D VIG+P + E AV
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVC 446
Query: 128 VPKPNSSVTAEEVKQFV 144
V KP S+ A+ + +FV
Sbjct: 447 VCKPGESIAADALAEFV 463
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 134 bits (339), Expect = 4e-38
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 28 IKIIDPVTS--VQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
+++++ + L GE+ ++G +F Y N+ +AT +DG+ TGD+A R P
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394
Query: 85 DGTHFI---------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
DG I I E+E+ +HP+V + AV G P GE A +VP
Sbjct: 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVP 454
Query: 130 -KPNSSVTAEEVKQFV 144
P + + V
Sbjct: 455 ADPAAPPALGTLADHV 470
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 133 bits (337), Expect = 9e-38
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 19 GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
GK ++ ++ D + G+TG L +G GY E +DG+ TG
Sbjct: 354 GKPMSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412
Query: 78 DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
D+ DG + ++ E+E+ HP V D A++ +P GE
Sbjct: 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472
Query: 124 AAVVVPKPNSSVTAEEVKQF 143
++P+ + A E+K F
Sbjct: 473 CVFIIPRDE-APKAAELKAF 491
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 132 bits (335), Expect = 4e-37
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 19 GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
G + + + D LP G+ G L +G F GY + D +G+ +G
Sbjct: 358 GYPMCPDDEVWVADA-EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416
Query: 78 DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
DL P+G + I+ E+E++ +HP V A++ + ++ GE
Sbjct: 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476
Query: 124 AAVVVPKPNSSVTAEEVKQF 143
A +V K + A +V++F
Sbjct: 477 CAYLVVKE--PLRAVQVRRF 494
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 127 bits (321), Expect = 2e-35
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 19/135 (14%)
Query: 25 HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
+ + V G GE+ +K D + Y N+ EAT++ D+ GW TGD+
Sbjct: 345 FTDVAVRGD-DGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEID 401
Query: 84 PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
+G +I + P E+ES+ P V +VAVIG+P + +GE+ AA+VV
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461
Query: 130 KPNSSVTAEEVKQFV 144
+ V+ +++ ++
Sbjct: 462 DQ-NEVSEQQIVEYC 475
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 124 bits (313), Expect = 2e-34
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 25 HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
+ +KI +P GEL +KG V GY + T ++G+ +TGD+A
Sbjct: 335 NVDVKIKNP------NKEGHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEID 386
Query: 84 PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
+G I I P ++E++ +Q P + D +G P D +G++P V
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446
Query: 130 KPNSSVTAEEVKQFV 144
+ ++ ++ ++
Sbjct: 447 ES--DISKAQLIAYL 459
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 114 bits (289), Expect = 6e-31
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 28 IKIIDPVTSVQLPDGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
+++ D DGK GE+ LKG + GY EAT+ L DG+ TGD+A +
Sbjct: 366 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425
Query: 86 GTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
G ++ IS +LE+ HP V++ AV+ IPH + E P AVVVP
Sbjct: 426 G--YVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP 483
Query: 130 KPNSSVTAEEVKQFVE 145
+ E + ++
Sbjct: 484 RGEKPTPEELNEHLLK 499
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 110 bits (277), Expect = 3e-29
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 21/135 (15%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
I++ D +PDG+ G+L +KG + Y N E ++ W+ +GD RLP+G
Sbjct: 363 IELRDE-AGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLG-EWIRSGDKYCRLPNG 420
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
+ +SP E+E + QH V + AV+G+ H A VV K
Sbjct: 421 CYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKRE 479
Query: 133 ---SSVTAEEVKQFV 144
S + AEE+K FV
Sbjct: 480 FAPSEILAEELKAFV 494
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 94.2 bits (235), Expect = 2e-23
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 34/154 (22%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
++IID +V LP G G++ ++ +F GY + + T + + GD
Sbjct: 385 VQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG-DFWLLGDRGI 442
Query: 82 RLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
+ DG F+ I P E+E+ +HP V + AVI P V GE+ A V
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFV 502
Query: 128 VPKP-----NSSVTAEEVKQFV-------EFPRK 149
V + +E++Q V ++PRK
Sbjct: 503 VLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRK 536
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 88.0 bits (219), Expect = 2e-21
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 32/152 (21%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
I+++D + G+ GE+ + +F+ Y E T+E D G+ HTGD+A+
Sbjct: 404 IELMDRDGRL-CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD-GYYHTGDMAW 461
Query: 82 RLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
DG F+ + P E+ES QHP V + A+ G+P V G++ A +
Sbjct: 462 MDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATI 521
Query: 128 VPKPN---SSVTAEEVKQFV-------EFPRK 149
V + S E++ V ++PR
Sbjct: 522 VLTKDYTPSDSLKNELQDHVKNVTAPYKYPRI 553
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 71.9 bits (177), Expect = 1e-15
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 23/130 (17%)
Query: 30 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 88
I + + + G +C+ G + GY + E + GWL TGDL Y L DG
Sbjct: 397 EIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDE-IAATGWLDTGDLGY-LLDGYL 454
Query: 89 FI--------------ISPCELESIFRQHPDVE--DVAVIGIPHDVFGELPAAVVVPKPN 132
++ I P ++E I Q P++ D E + + +
Sbjct: 455 YVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTA----QEKIILQIQCRIS 510
Query: 133 SSVTAEEVKQ 142
++
Sbjct: 511 DEERRGQLIH 520
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 69.6 bits (171), Expect = 6e-15
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 27/138 (19%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML--------DDDGWLHTGD 78
+KIIDP T + + GE+ ++ + V GY N+ E T+ +L TGD
Sbjct: 383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGD 442
Query: 79 LAYRLPDGTHFI--------------ISPCELE-SIFRQHPDVE--DVAVIGIPHDVFGE 121
L + L + ++ P ++E S+ A I + +
Sbjct: 443 LGF-LHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYK 501
Query: 122 LPAAVVVPKPNSSVTAEE 139
L V A++
Sbjct: 502 LTVMCEVKNRFMDDVAQD 519
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 63.6 bits (155), Expect = 7e-13
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML-----------DDDGWLH 75
++I+D T ++ PDG GE+ + GD V GY K + ++ + WL
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 76 TGDLAYRLPDG 86
TGD + + DG
Sbjct: 464 TGDSGF-VTDG 473
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 52.5 bits (127), Expect = 5e-09
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 21/127 (16%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEM-LDDDG-WL-HTGDLAYRLPDGT-HFI--- 90
L G+ GE+ + G V GY N E T E G HTGD+ D +
Sbjct: 343 LSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402
Query: 91 ----------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP--AAVVVPKPNSSVTAE 138
I ++ Q P V + ++ ++ A +V K +
Sbjct: 403 DFQIKYAGYRIELEDVSQQLNQSPMVASAVAV-PRYNKEHKVQNLLAYIVVKDGVKERFD 461
Query: 139 EVKQFVE 145
+ +
Sbjct: 462 RELELTK 468
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 51.1 bits (123), Expect = 2e-08
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 40 PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH-TGDLAYRLPDGT-HFI------ 90
G GEL ++G V GY N+ +A + ++ TGD+ D + F+
Sbjct: 370 KKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQ 429
Query: 91 -------ISPCELESIFRQHPDVEDVAVI 112
+ E+ + R + V
Sbjct: 430 VKVRGQRLELGEVSEVIRSLSPTDIDVVT 458
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 50.6 bits (122), Expect = 2e-08
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 27/130 (20%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEM-----LDDDGWL-HTGDLAYRLPDGT---- 87
G+ GELC+ G+ + GY + E T + L TGD A L DG
Sbjct: 367 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 426
Query: 88 ----H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNSSV 135
+ + E+ESI +H + + AV D + L A V +
Sbjct: 427 GRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK-DHQEQPYLCAYFV---SEKHI 482
Query: 136 TAEEVKQFVE 145
E+++QF
Sbjct: 483 PLEQLRQFSS 492
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 49.9 bits (120), Expect = 5e-08
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 27/129 (20%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH------TGDLAYRLPDGT-HFI 90
P G GELC+ G V GY N+ + TKE ++ + TGDLA LPDGT +
Sbjct: 798 QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA 857
Query: 91 -------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNSSV 135
I E+E +++P V+D V+ G+ + A +V + +
Sbjct: 858 GRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVV-ADRHESGDASINAYLV---NRTQL 913
Query: 136 TAEEVKQFV 144
+AE+VK +
Sbjct: 914 SAEDVKAHL 922
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 48.7 bits (117), Expect = 1e-07
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 71 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 116
+GD A R DG ++I + E+ES HP + + AV+GIPH
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 117 DVFGELPAAVVVPKPNSSVTAEEVKQFVEFPRK 149
+ G+ A V + E + + RK
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRK 585
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 46.7 bits (112), Expect = 5e-07
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 30/130 (23%)
Query: 37 VQLPDGKTGELCLKGD-VFLGYRNKVEATKE------MLDDDGWLH-TGDLAYRLPDGT- 87
+ P + GE+ G + GYRN T+ + TGD A G
Sbjct: 354 IAEP-DRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRL 412
Query: 88 HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134
FI + LE FR+ P + D A++ + +L A
Sbjct: 413 RFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGK----- 467
Query: 135 VTAEEVKQFV 144
A+ Q +
Sbjct: 468 --ADASPQAL 475
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 46.8 bits (112), Expect = 6e-07
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
TGD A + DG +I +S E+E+ + P V + AV+G D+ G+
Sbjct: 507 TGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQ 566
Query: 122 LPAAVVVPKPNSSVTAEEVKQFVE 145
AA VV K SS + + +
Sbjct: 567 AVAAFVVLKNKSSWSTATDDELQD 590
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 45.6 bits (109), Expect = 1e-06
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 27/130 (20%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKE--MLDDDGWLH-TGDLAYRLPDGT------- 87
PDG+ GE+ + G V +GY E T++ + D + TGD Y + +G
Sbjct: 340 APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGY-VENGLLFYNGRL 398
Query: 88 -H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNSSV--- 135
+ + E+E R VE ++ I L AVVVP +S
Sbjct: 399 DFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPI-KKGEKYDYL-LAVVVPGEHSFEKEF 456
Query: 136 -TAEEVKQFV 144
+K+ +
Sbjct: 457 KLTSAIKKEL 466
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 45.6 bits (109), Expect = 1e-06
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKE--MLDDDGWL-HTGDLAYRLPDGT------- 87
LP+G+ GE+ + G V GY + E T++ + W TGD + + DG
Sbjct: 339 LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF-IQDGQIFCQGRL 397
Query: 88 -H------FIISPCELESIFRQHPDVEDVAVI 112
+ + E+E RQ V VI
Sbjct: 398 DFQIKLHGYRMELEEIEFHVRQSQYVRSAVVI 429
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 37.4 bits (86), Expect = 8e-04
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 21 HFQEHNAIKIIDPVTSVQLPDGKTGELC---LKGDVFL-GYRNKVEATKEMLDDDGWLHT 76
F ++D +T+ + G+ G + L F + A + G+
Sbjct: 290 SFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRL-PGVSGFAGD 348
Query: 77 G 77
Sbjct: 349 R 349
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 31.9 bits (73), Expect = 0.069
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 19 GKHFQE-HNAIKIIDPVTSVQLPDGKTGELCL 49
G HF E ++IIDP T +P+G+ GEL L
Sbjct: 257 GMHFWEDCYLVEIIDPETGEPVPEGEIGELVL 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.075
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 20/124 (16%)
Query: 20 KHFQEHNAIKIID-----PVTSVQLPDGKTGELCLKGDVFLGYRNKVEATK--EMLDDDG 72
HF++ I+D PV G+ G+ + + + V+ E + +
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 73 WLHTGDLAYRLPDG----THF------IISPCELESIFRQHPDVEDVAVIGIPHDVFGEL 122
H+ +R G T F ++ E + + D G H + GE
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG--HSL-GEY 1767
Query: 123 PAAV 126
A
Sbjct: 1768 AALA 1771
Score = 27.3 bits (60), Expect = 2.4
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 44/118 (37%)
Query: 46 ELCLKGDVFLGY------RNKVEATKEMLD------DDGWLHTGD---LAYRLPDG---- 86
EL K FLGY +KV ++L+ ++ +L D LA +L
Sbjct: 59 ELVGK---FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 87 ---THFII-------------SPCELESIFRQHPDVEDVAVI------GIPHDVFGEL 122
T +I + S + + ++ G D F EL
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 0.14
Identities = 27/146 (18%), Positives = 38/146 (26%), Gaps = 26/146 (17%)
Query: 15 ATLTG--KHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEA-------TK 65
A + G + HN P T D KT E DV Y +
Sbjct: 855 AWIMGFISY---HNGNLKGRPYTG--WVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEP 909
Query: 66 EMLDDDGWLHTGDLA--YRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
E+ + + D F S E QH D D+ I + +L
Sbjct: 910 ELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLL 969
Query: 124 AAVVVPKPNSSVTAEEVKQFVEFPRK 149
+ P + F R
Sbjct: 970 KGATLYIPKAL----------RFDRL 985
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 30.7 bits (70), Expect = 0.16
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 30 IIDPVTSVQLPDGKTGELCL 49
IIDP T LPDG+ GEL
Sbjct: 274 IIDPETGEVLPDGELGELVF 293
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 30.4 bits (69), Expect = 0.18
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 30 IIDPVTSVQLPDGKTGELCL 49
IIDPVT LPDG GEL
Sbjct: 276 IIDPVTGEVLPDGSQGELVF 295
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.23
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 30/106 (28%)
Query: 41 DGKTGELCLK-GDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESI 99
D +TGE + D+ + +A + D + D I+S E++ I
Sbjct: 8 DFETGEHQYQYKDILSVFE---DAFVDNFD----------CKDVQDMPKSILSKEEIDHI 54
Query: 100 FRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
V + F L + K V++FVE
Sbjct: 55 IMSKDAVSGTLRL------FWTL-----LSKQEEM-----VQKFVE 84
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta
barrel, OB-fold, 3D domain swapping, signaling protein
activator; HET: P6G; 2.60A {Escherichia coli} PDB:
2z4h_A*
Length = 233
Score = 27.0 bits (59), Expect = 2.1
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 66 EMLDDDGWLHTGDLAYRL-PDGTHFIISPCELESIFRQHPDV 106
EMLD +G Y L + ++P L ++ D
Sbjct: 98 EMLDREGNPIESQFNYTLEAAQSSLPMTPMTLRGMYFYMADA 139
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein; periplasmic binding protein, cellulose,
thermophilic proteins; HET: CBI; 1.50A {Thermotoga
maritima} PDB: 2o7j_A* 3i5o_A*
Length = 592
Score = 26.7 bits (59), Expect = 4.0
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 56 GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII 91
++ ++LD+ G+ D PDGT
Sbjct: 339 RIPFDLDMANKILDEAGYKKGPDGVRVGPDGTKLGP 374
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 25.7 bits (57), Expect = 5.6
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 109 VAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
+ V + F E + + PN TA+
Sbjct: 78 LEVTN-ERNTFAEA--MMFMDTPNYVATAQ 104
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein
structure initia structural genomics of pathogenic
protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP:
c.42.1.1
Length = 316
Score = 25.7 bits (57), Expect = 7.1
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 88 HFIISPCELESIFR--QHPDVE--DVAVIGIPHD 117
H + + + + E D+ +IG P+D
Sbjct: 7 HHMAARTDDPRLLSLFSAQREEDADIVIIGFPYD 40
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 25.6 bits (57), Expect = 7.6
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 55 LGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI--ISPCELESIFRQHPDVEDV 109
GYR + + L L G +R G+ I + C + P +E +
Sbjct: 125 WGYRRRARLSLNYLPKTQQLQMG---FRKA-GSSDIVDVKQCPI-----LAPQLEAL 172
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury
resistance, mercuric resistance, plasmid; 1.78A
{Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A
3f0p_A 3f2f_A
Length = 220
Score = 25.5 bits (55), Expect = 8.1
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 77 GDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIP------HDVFGELPAAVVVPK 130
D+ HF S E +H +E +A++ + + L +
Sbjct: 152 ADVRQSFCSHVHFFASVPTAEDWASKHQGLEGLAIVSVHEAFGLGQEFNRHLLQTMSSRT 211
Query: 131 P 131
P
Sbjct: 212 P 212
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor,
carbohydrate binding, coiled-coil, jelly roll; HET:
ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB:
2aac_A* 1xja_A 2ara_A
Length = 164
Score = 25.4 bits (55), Expect = 8.2
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 72 GWLHTGDLAYRLPDGTHFIISPCE 95
G + + G + P E
Sbjct: 49 GVVKNQGREFVCRPGDILLFPPGE 72
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Length = 322
Score = 25.3 bits (56), Expect = 8.2
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 105 DVEDVAVIGIPHD 117
D++ A+IG+P
Sbjct: 36 DIKGPALIGVPLS 48
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 25.2 bits (56), Expect = 9.1
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 108 DVAVIGIPHD 117
V +IG+P D
Sbjct: 36 QVGLIGVPWD 45
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 25.2 bits (56), Expect = 9.2
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 32 DPVTSVQLPDGKTGELC-LKGD---VFLGYRNKVEATKEM---LDDDGWLHTGD 78
V V + + KTGE+ L + + +G+ + K D +G++ +
Sbjct: 220 KVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDE 273
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 25.3 bits (56), Expect = 9.3
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 29/89 (32%)
Query: 31 IDPVTSVQLPDGKTGELCLKGDVFLG-------------------------YRNKVEATK 65
DPV + L G+ E D+ +G R V K
Sbjct: 133 ADPVGRLTLQTGEVLE----ADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMK 188
Query: 66 EMLDDDGWLHTGDLAYRLPDGTHFIISPC 94
+ L W +T D+ P + SPC
Sbjct: 189 KELGHGEWDNTIDMWNFWPRVQRILYSPC 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.417
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,436,689
Number of extensions: 146347
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 68
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)