RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4966
(149 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 126 bits (317), Expect = 2e-35
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 15/132 (11%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
K++D T L + GELC++G + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427
Query: 87 THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
FI ++P ELESI QHP++ D V G+P D GELPAAVVV +
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 487
Query: 133 SSVTAEEVKQFV 144
++T +E+ +V
Sbjct: 488 KTMTEKEIVDYV 499
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 114 bits (286), Expect = 3e-31
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 28 IKIIDPVTSVQLPDGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
+++ D DGK GE+ LKG + GY EAT+ L DG+ TGD+A +
Sbjct: 359 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 418
Query: 86 GTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
G I IS +LE+ HP V++ AV+ IPH + E P AVVVP+
Sbjct: 419 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG 478
Query: 132 NSSVTAEEVKQFVE 145
E + ++
Sbjct: 479 EKPTPEELNEHLLK 492
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 105 bits (262), Expect = 9e-28
Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 20/141 (14%)
Query: 28 IKIIDPVTSVQLPDGKTGELCLKGD---VFLGYRNKVEATKE--MLDDDGWLHTGDLAYR 82
++D G L + E ++ +GD A R
Sbjct: 442 PALVDNEGHP-QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARR 500
Query: 83 LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
DG ++I + E+ES HP + + AV+GIPH + G+ A V
Sbjct: 501 DEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT 560
Query: 129 PKPNSSVTAEEVKQFVEFPRK 149
+ E + + RK
Sbjct: 561 LNHGEEPSPELYAEVRNWVRK 581
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 99.2 bits (246), Expect = 1e-25
Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 28 IKIIDPVTSVQLPDGKT-GELCLKGD---VFLGYRNKVEATKE--MLDDDGWLHTGDLAY 81
++DP T +L G L +K + + + G+ TGD A
Sbjct: 430 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAA 489
Query: 82 RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
+ DG +I +S E+E+ + P V + AV+G D+ G+ AA V
Sbjct: 490 KDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFV 549
Query: 128 VPKPNSSVTAEEVKQFVEFPR 148
V K SS + + + +
Sbjct: 550 VLKNKSSWSTATDDELQDIKK 570
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 95.3 bits (236), Expect = 2e-24
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 23/127 (18%)
Query: 39 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDD------DGWLHTGDLAYRLPDGTHFI- 90
G+ GELC+ G+ + GY + E T + D + TGD A L DG
Sbjct: 351 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 410
Query: 91 -------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA 137
+ E+ESI +H + + AV A V + + +
Sbjct: 411 GRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPL 468
Query: 138 EEVKQFV 144
E+++QF
Sbjct: 469 EQLRQFS 475
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 91.6 bits (226), Expect = 5e-23
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 18 TGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLK--GDVFLGYRNKVEATKEMLDDDGWLH 75
F I I + +G+ GEL + F+GY N+ +AT E L D GW
Sbjct: 324 MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYR 382
Query: 76 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
T D+A P+GT I I P E+E + P V +V VIG+ +G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 122 LPAAVVVPKPNSSVTAEEVKQFV 144
A VVP+ +++A+ + F
Sbjct: 443 SVTACVVPRLGETLSADALDTFC 465
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 89.3 bits (220), Expect = 3e-22
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 19 GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTG 77
GK ++ ++ D + G+TG L +G GY E +DG+ TG
Sbjct: 354 GKPMSPYDESRVWDD-HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412
Query: 78 DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
D+ DG + ++ E+E+ HP V D A++ +P GE
Sbjct: 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472
Query: 124 AAVVVPKPNSSVTAEEVKQFV 144
++P+ + A E+K F+
Sbjct: 473 CVFIIPRDE-APKAAELKAFL 492
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
5693]}
Length = 298
Score = 25.3 bits (54), Expect = 3.2
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 95 ELESIFRQHPDVE--DVAVIGIPHD 117
L S+F E D+ +IG P+D
Sbjct: 5 RLLSLFS-AQREEDADIVIIGFPYD 28
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 152
Score = 24.8 bits (54), Expect = 4.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 131 PNSSVTAEEVKQFVEFPRK 149
SSVTAEE K+F+ K
Sbjct: 134 SGSSVTAEEAKKFLAPKDK 152
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase
{Escherichia coli [TaxId: 562]}
Length = 223
Score = 24.9 bits (53), Expect = 4.9
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 61 VEATKEMLDDDGW--LHTGDLAYRLPDGTHFIISP 93
+EA L L G+++ + F+I P
Sbjct: 10 LEANL-ALPKHNLVTLTWGNVSAVDRERGVFVIKP 43
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II,
mitochondrial [TaxId: 9606]}
Length = 306
Score = 24.9 bits (53), Expect = 5.5
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 108 DVAVIGIPHD 117
VAVIG P
Sbjct: 2 SVAVIGAPFS 11
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId:
1299]}
Length = 303
Score = 24.5 bits (52), Expect = 5.9
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 108 DVAVIGIPHD 117
DVA +G+P D
Sbjct: 28 DVAALGVPFD 37
>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
(Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 24.4 bits (53), Expect = 6.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 97 ESIFRQHPDVEDVAVIGIPHDV------FGELPAAVV 127
E I + HPD + ++G+ HD+ FGE AVV
Sbjct: 68 EGIRKAHPDKDWFHLVGLLHDLGKVLALFGEPQWAVV 104
>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 73
Score = 23.2 bits (50), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 107 EDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
+ + +GI DVFG + V KP S V +
Sbjct: 33 KRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGE 68
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 301
Score = 24.1 bits (51), Expect = 8.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 108 DVAVIGIPHD 117
DV VIG P+D
Sbjct: 23 DVVVIGAPYD 32
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 22.8 bits (49), Expect = 9.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 114 IPHDVFGELPAAVVVPKP 131
IPH++ E A+ +V KP
Sbjct: 3 IPHEIEVEFGASKIVLKP 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.417
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 588,677
Number of extensions: 27267
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 22
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)