BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4967
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 137 QKTPDSTVVYTDA-SKNDVAVSSAFCSQDTKFSSRLHPLLSICN--AELTAILFAIHFSI 193
+ P V Y A ++N + + SQ K R+ L + N A+LTAI A+ S
Sbjct: 1049 EPIPKEDVYYVGACNRNSKEGKAGYISQYGK--QRVETLENTTNQQAKLTAIKMALEDSG 1106
Query: 194 SAHLNNVNRAYLVICSDSLSALQTL--QNIFSLNPIAGEIRDLILTNKSKLNVRFIWVPS 251
NVN I +DS A+ L Q S +P+ +I L++ K + WVP+
Sbjct: 1107 P----NVN-----IVTDSQYAMGILTAQPTQSDSPLVEQIIALMI---QKQQIYLQWVPA 1154
Query: 252 HVGIAGNEEADRLAKEAL 269
H GI GNEE D+L + +
Sbjct: 1155 HKGIGGNEEIDKLVSKGI 1172
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 40.0 bits (92), Expect = 0.026, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 134 ELLQKTPDSTVVYTDASK-NDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFS 192
+L+++ +YTD K N +++ S RL P+ AE AI A+ +
Sbjct: 611 KLVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDT 669
Query: 193 ISAHLNNVNRAYLVICSDSLS---ALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFIWV 249
+N V +Y C +++ L+ QN + PI IR+ K V F WV
Sbjct: 670 RDKQVNIVTDSYY--CWKNITEGLGLEGPQNPWW--PIIQNIRE-------KEIVYFAWV 718
Query: 250 PSHVGIAGNEEADRLAK 266
P H GI GN+ AD AK
Sbjct: 719 PGHKGIYGNQLADEAAK 735
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 70/175 (40%), Gaps = 29/175 (16%)
Query: 101 SAPWLIEPPP-VDYSLRKFNKDTDSKEEINISFQELLQKTP---DSTVVYTDASKNDVAV 156
++P+L PPP VDY +NI + K P + Y D +
Sbjct: 560 NSPYLKAPPPEVDYI----------HAALNIKRALSMIKDPPISGAETWYIDGGRKLGKA 609
Query: 157 SSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQ 216
+ A DT + S AE+ A+L A+ A +N I +DS Q
Sbjct: 610 AKAAYWTDTGKWQVMELEGSNQKAEIQALLLAL----KAGPEEMN-----IITDS----Q 656
Query: 217 TLQNIFSLNPIAGE-IRDLILTNKSKLNVRFI-WVPSHVGIAGNEEADRLAKEAL 269
+ NI S P E I +L K FI WVP H GI GNEE D+L + +
Sbjct: 657 YMINILSQQPDKMEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLCQTMM 711
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTL--QNIFSLNPIAGEIRDLILT 237
AEL AIL A+ S + + I +DS AL + Q S +PI +I + LT
Sbjct: 1063 AELMAILLALQDS---------KETVNIVTDSQYALGVISSQPTQSESPIVQQIIEE-LT 1112
Query: 238 NKSKLNVRFIWVPSHVGIAGNEEADRLAKE 267
K + V WVP+H GI GNE+ D+L +
Sbjct: 1113 KKEQ--VYLTWVPAHKGIGGNEKIDKLVSK 1140
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 39.3 bits (90), Expect = 0.041, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 144 VVYTDASKNDVAVSSAFCSQDTKFSSRLHPLLSICN--AELTAILFAIHFSISAHLNNVN 201
V Y D + + V + SR+ L + N AELTA+ A+ S NVN
Sbjct: 1048 VYYVDGAASKVTKLGKAGYLSERGKSRIRELENTTNQQAELTAVKMALEDSGE----NVN 1103
Query: 202 RAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLILTNKSKLNVRFIWVPSHVGIAGN 258
I +DS Q + NI + P + +I K V WVP+H GI GN
Sbjct: 1104 -----IVTDS----QYVMNILTACPQESNSPLVEQIIQALMKKRQVYLQWVPAHKGIGGN 1154
Query: 259 EEADRLAKEAL 269
E D+L + +
Sbjct: 1155 TEIDKLVSKGI 1165
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 39.3 bits (90), Expect = 0.048, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 128 INISFQELLQKTPDSTVVYTD--ASKNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAI 185
I + + L P++ Y D A+++ + + + ++ S+ + AEL A+
Sbjct: 1037 IRLWYNLLSDPIPEAETFYVDGAANRDSKKGRAGYVTNRGRYRSKDLENTTNQQAELWAV 1096
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNI--FSLNPIAGEIRDLILTNKSKLN 243
A+ S A +N I +DS + LQ + S +PI + +I K
Sbjct: 1097 DLALKDS-GAQVN--------IVTDSQYVMGVLQGLPDQSDSPI---VEQIIQKLTQKTA 1144
Query: 244 VRFIWVPSHVGIAGNEEADRLAKE 267
+ WVP+H GI GNEE D+L +
Sbjct: 1145 IYLAWVPAHKGIGGNEEVDKLVSK 1168
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 134 ELLQKTPDSTVVYTDASK-NDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFS 192
+L+++ +YTD K N +++ S RL P+ AE AI A+ +
Sbjct: 612 KLVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDT 670
Query: 193 ISAHLNNVNRAYLVICSDSLSALQTLQNIFS-LNPIAGEIRDLILTNKSKLNVRFIWVPS 251
+N V +Y C +++ L+ S PI IR+ K V F WVP
Sbjct: 671 RDKQVNIVTDSYY--CWKNITEGLGLEGPQSPWWPIIQNIRE-------KEIVYFAWVPG 721
Query: 252 HVGIAGNEEADRLAK 266
H GI GN+ AD AK
Sbjct: 722 HKGICGNQLADEAAK 736
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 134 ELLQKTPDSTVVYTDASK-NDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFS 192
+L+++ +YTD K N +++ S RL P+ AE AI A+ +
Sbjct: 612 KLVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDT 670
Query: 193 ISAHLNNVNRAYLVICSDSLSALQTLQNIFS-LNPIAGEIRDLILTNKSKLNVRFIWVPS 251
+N V +Y C +++ L+ S PI IR+ K V F WVP
Sbjct: 671 RDKQVNIVTDSYY--CWKNITEGLGLEGPQSPWWPIIQNIRE-------KEIVYFAWVPG 721
Query: 252 HVGIAGNEEADRLAK 266
H GI GN+ AD AK
Sbjct: 722 HKGICGNQLADEAAK 736
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 38.9 bits (89), Expect = 0.059, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 137 QKTPDSTVVYTDASKNDVAVS--SAFCSQDTKFSSRLHPLLSICN--AELTAILFAIHFS 192
+ P V Y D + N + + + +Q K R+ L + N AELTAI A+
Sbjct: 1045 EPIPGEDVYYVDGACNRQSKEGKAGYITQQGK--QRVQQLENTTNQQAELTAIKMALE-- 1100
Query: 193 ISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFIWVPSH 252
++ + +V S + T Q S +P+ + +I K + WVP+H
Sbjct: 1101 -----DSGPKVNIVTDSQYAMGILTAQPTQSDSPL---VEQIIAQMVQKEAIYLQWVPAH 1152
Query: 253 VGIAGNEEADRLAKEAL 269
GI GNEE D+L + +
Sbjct: 1153 KGIGGNEEIDKLVSKGV 1169
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 38.9 bits (89), Expect = 0.064, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 137 QKTPDSTVVYTDAS--KNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFSIS 194
+ P V Y D + +N + + +Q K R+ L + N + A L AI ++
Sbjct: 1046 EPIPKEDVYYVDGACNRNSREGKAGYITQYGK--QRVEKLENTTNQQ--AELMAIKMALE 1101
Query: 195 AHLNNVNRAYLVICSDSLSALQTL--QNIFSLNPIAGEIRDLILTNKSKLNVRFIWVPSH 252
NVN I +DS A+ L Q S +P+ +I L++ K + WVP+
Sbjct: 1102 DSGPNVN-----IVTDSQYAMGILTAQPTQSDSPLIEQIIALMV---QKHQIYLQWVPAD 1153
Query: 253 VGIAGNEEADRLAKEAL 269
GI GNEE D+L + +
Sbjct: 1154 KGIGGNEEIDKLVSQGM 1170
>sp|O60930|RNH1_HUMAN Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2
Length = 286
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF------SLNPIAGE--- 230
AE+ A AI A N+N+ LV+ +DS+ + + N AG+
Sbjct: 185 AEIHAACKAIE---QAKTQNINK--LVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVI 239
Query: 231 -IRDLILTNK--SKLNVRFIWVPSHVGIAGNEEADRLAKEA 268
D + + ++++++ VP H G GNEEADRLA+E
Sbjct: 240 NKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREG 280
>sp|P35956|POL_VILVK Pol polyprotein OS=Maedi visna virus (strain KV1772) GN=pol PE=1
SV=1
Length = 1101
Score = 38.5 bits (88), Expect = 0.079, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 225 NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKE 267
NPI I +L+ NK K+ V WVP H GI NEE DR E
Sbjct: 646 NPIQARIMELV-HNKEKIGVH--WVPGHKGIPQNEEIDRYISE 685
>sp|P23427|POL_VILV2 Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=pol PE=3 SV=1
Length = 1105
Score = 38.5 bits (88), Expect = 0.079, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 225 NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKE 267
NPI I +L+ NK K+ V WVP H GI NEE DR E
Sbjct: 650 NPIQARIMELV-HNKEKIGVH--WVPGHKGIPQNEEIDRYISE 689
>sp|P03370|POL_VILV Pol polyprotein OS=Maedi visna virus (strain 1514) GN=pol PE=3 SV=1
Length = 1105
Score = 38.5 bits (88), Expect = 0.079, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 225 NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKE 267
NPI I +L+ NK K+ V WVP H GI NEE DR E
Sbjct: 650 NPIQARIMELV-HNKEKIGVH--WVPGHKGIPQNEEIDRYISE 689
>sp|A9W185|RNH_METEP Ribonuclease H OS=Methylobacterium extorquens (strain PA1) GN=rnhA
PE=3 SV=1
Length = 228
Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 243 NVRFIWVPSHVGIAGNEEADRLA----KEALTS 271
+VR+ WV H G AGNE ADRLA +EAL+
Sbjct: 115 DVRWTWVRGHAGEAGNERADRLATLGRREALSG 147
>sp|P05962|POL_HV2NZ Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate NIH-Z) GN=gag-pol PE=3 SV=3
Length = 1461
Score = 38.1 bits (87), Expect = 0.091, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 8/142 (5%)
Query: 128 INISFQELLQKTPDSTVVYTDASKNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILF 187
+ ++F + + P + YTD S N + + R+ L N + F
Sbjct: 1031 VRLAFNLVGEPVPGAETFYTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAF 1090
Query: 188 AIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFI 247
A+ + S +A +++ S + + Q S N I +I + ++ ++ +
Sbjct: 1091 AMALTDSG-----PKANIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEA---IYVA 1142
Query: 248 WVPSHVGIAGNEEADRLAKEAL 269
WVP+H GI GN+E D L + +
Sbjct: 1143 WVPAHKGIGGNQEVDHLVSQGI 1164
>sp|P23426|POL_VILV1 Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1)
GN=pol PE=3 SV=1
Length = 1105
Score = 38.1 bits (87), Expect = 0.092, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 225 NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKE 267
NPI I +L + NK K+ V WVP H GI NEE DR E
Sbjct: 650 NPIQARIMEL-MHNKEKIGVH--WVPGHKGIPQNEEIDRYISE 689
>sp|O70338|RNH1_MOUSE Ribonuclease H1 OS=Mus musculus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 242 LNVRFIWVPSHVGIAGNEEADRLAKEA 268
++++++ +P H G GNEEADRLA+E
Sbjct: 253 MDIQWMHIPGHSGFVGNEEADRLAREG 279
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 37.7 bits (86), Expect = 0.15, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 146 YTDASKN-DVAVSSAFCSQDTKFSSRLHPLLSICN--AELTAILFAIHFSISAHLNNVNR 202
Y D + N D + A D F R+ L+ N EL A+ A+ S S
Sbjct: 1037 YVDGAANRDSKMGKAGYITDRGFQ-RVEEYLNTTNQQTELHAVKLALEDSGS-------- 1087
Query: 203 AYLVICSDSLSALQTLQN--IFSLNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEE 260
Y+ I +DS + L + + +PI EI +L+ K K + W+P+H GI GNE+
Sbjct: 1088 -YVNIVTDSQYVVGILASRPTETDHPIVKEIIELM---KGKEKIYLSWLPAHKGIGGNEQ 1143
Query: 261 ADRLAKEAL 269
D+L +
Sbjct: 1144 IDKLVSSGI 1152
>sp|Q5BK46|RNH1_RAT Ribonuclease H1 OS=Rattus norvegicus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 242 LNVRFIWVPSHVGIAGNEEADRLAKEA 268
++++++ +P H G GNEEADRLA+E
Sbjct: 253 MDIQWMHIPGHSGFVGNEEADRLAREG 279
>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate EHO) GN=gag-pol PE=3 SV=3
Length = 1464
Score = 37.4 bits (85), Expect = 0.16, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 146 YTDASKNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYL 205
YTD S N + + ++ PL N + FA+ S N+
Sbjct: 1049 YTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQDSGPQVNI----- 1103
Query: 206 VICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLA 265
++ S + + Q + +PI EI + ++ K K+ V WVP+H G+ GN+E D L
Sbjct: 1104 IVDSQYVMGIVAAQPTETESPIVREIIEEMI-KKEKIYVG--WVPAHKGLGGNQEVDHLV 1160
Query: 266 KEAL 269
+ +
Sbjct: 1161 SQGI 1164
>sp|A4IYE6|RNH_FRATW Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
WY96-3418) GN=rnhA PE=3 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 236 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
LTNK NV + WV H G AGNE+AD LA +A+
Sbjct: 115 LTNKH--NVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|Q0BMB7|RNH_FRATO Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=rnhA PE=3 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 236 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
LTNK NV + WV H G AGNE+AD LA +A+
Sbjct: 115 LTNKH--NVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|A0Q6W0|RNH_FRATN Ribonuclease H OS=Francisella tularensis subsp. novicida (strain
U112) GN=rnhA PE=3 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 236 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
LTNK NV + WV H G AGNE+AD LA +A+
Sbjct: 115 LTNKH--NVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|B2SFV9|RNH_FRATM Ribonuclease H OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=rnhA PE=3 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 236 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
LTNK NV + WV H G AGNE+AD LA +A+
Sbjct: 115 LTNKH--NVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|Q2A3X6|RNH_FRATH Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
LVS) GN=rnhA PE=3 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 236 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
LTNK NV + WV H G AGNE+AD LA +A+
Sbjct: 115 LTNKH--NVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|A7NBM9|RNH_FRATF Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=rnhA PE=3 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 236 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
LTNK NV + WV H G AGNE+AD LA +A+
Sbjct: 115 LTNKH--NVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|Q14IN1|RNH_FRAT1 Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
FSC 198) GN=rnhA PE=3 SV=2
Length = 152
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 236 LTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
LTNK NV + WV H G AGNE+AD LA +A+
Sbjct: 115 LTNKH--NVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Query: 128 INISFQELLQKTPDSTVVYTDASKNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILF 187
+ ++F + P + YTD S N + + R+ L N + F
Sbjct: 1032 VRLTFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDRVRVLEQTSNQQAELEAF 1091
Query: 188 AIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEI-RDLILTNKSKLNVRF 246
A+ + S N+ ++ S + + Q S N I +I D+I K V
Sbjct: 1092 AMALADSGPKVNI-----IVDSQYVMGIVAGQPTESENRIVNQIIEDMI----KKEAVYV 1142
Query: 247 IWVPSHVGIAGNEEADRLAKEAL 269
WVP+H GI GN+E D L + +
Sbjct: 1143 AWVPAHKGIGGNQEVDHLVSQGI 1165
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 37.0 bits (84), Expect = 0.23, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNI--FSLNPIAGEIRDLILTNKSKLN 243
L AIH ++ + VN I +DS AL +Q S + I +I + ++ K
Sbjct: 1059 LHAIHLALQDSGSEVN-----IVTDSQYALGIIQAQPDRSESEIVNQIIEKLI---EKEK 1110
Query: 244 VRFIWVPSHVGIAGNEEADRLAKEAL 269
V WVP+H GI GNE+ D+L +
Sbjct: 1111 VYLSWVPAHKGIGGNEQVDKLVSSGI 1136
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 36.6 bits (83), Expect = 0.26, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 35/177 (19%)
Query: 102 APWLIEPPP-VDYSLRKFNKDTDSKEEINISFQELLQKTPDSTVV-----YTDAS-KNDV 154
+P+L PPP V++ +S + L D+ ++ Y D S K
Sbjct: 560 SPYLKAPPPEVEFI------------HAALSIKRALSMIQDAPIIGAETWYIDGSRKQGK 607
Query: 155 AVSSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSA 214
A +A+ + K+ ++ I + A + A+ ++ A +N I +DS
Sbjct: 608 AARAAYWTNTGKWQ-----IMEIEGSNQKAEVQALLLALKAGSEEMN-----IITDS--- 654
Query: 215 LQTLQNIFSLNP--IAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
Q + NI + P + G ++++ + K+ + WVP H GI GNEE D+L + +
Sbjct: 655 -QYILNILNQQPDLMEGLWQEVLEQMEKKIAIFIDWVPGHKGIPGNEEVDKLCQTMM 710
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 36.6 bits (83), Expect = 0.29, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNK 239
AEL A+L A+ ++ + +V S + + + Q S +PI +I + LT K
Sbjct: 1065 AELMAVLIALQ-------DSKEQVNIVTDSQYVLGIISSQPTQSDSPIVQQIIEE-LTKK 1116
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKE 267
+ V WVP+H GI GNE+ D+L +
Sbjct: 1117 ER--VYLTWVPAHKGIGGNEKIDKLVSK 1142
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 36.6 bits (83), Expect = 0.34, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLIL 236
AEL AI A+ S R+ + I +DS AL +Q P E + +I
Sbjct: 1062 AELQAIQLALQDS---------RSEVNIVTDSQYALGIIQ----AQPDRSEAELVNQIIE 1108
Query: 237 TNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
K V WVP+H GI GNE+ D+L +
Sbjct: 1109 QLIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGI 1141
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 36.2 bits (82), Expect = 0.35, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLILTNKSKL 242
L AIH ++ + VN I +DS AL +Q P E + +I K
Sbjct: 1061 LQAIHLALQDSGSEVN-----IVTDSQYALGIIQ----AQPDKSESELVNQIIEQLIQKE 1111
Query: 243 NVRFIWVPSHVGIAGNEEADRLAKEAL 269
V WVP+H GI GNE+ D+L +
Sbjct: 1112 KVYLSWVPAHKGIGGNEQVDKLVSSGI 1138
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 36.2 bits (82), Expect = 0.38, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLILTNKSKL 242
L AIH ++ + VN I +DS AL +Q P E + +I K
Sbjct: 1071 LQAIHLALQDSGSEVN-----IVTDSQYALGIIQ----AQPDKSESEIVNQIIEQLIQKD 1121
Query: 243 NVRFIWVPSHVGIAGNEEADRLAKEAL 269
V WVP+H GI GNE+ D+L +
Sbjct: 1122 KVYLSWVPAHKGIGGNEQVDKLVSSGI 1148
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 36.2 bits (82), Expect = 0.40, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLILTNKSKL 242
L AIH ++ VN I +DS AL +Q P E + +I K
Sbjct: 1067 LQAIHLALQDSGLEVN-----IVTDSQYALGIIQ----AQPDKSESELVSQIIEQLIKKE 1117
Query: 243 NVRFIWVPSHVGIAGNEEADRLAKEAL 269
V WVP+H GI GNE+ DRL +
Sbjct: 1118 KVYLAWVPAHKGIGGNEQVDRLVSTGI 1144
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 36.2 bits (82), Expect = 0.43, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLILTNKSKL 242
L AIH ++ + VN I +DS AL +Q P E + +I K
Sbjct: 1061 LQAIHLALQDSGSEVN-----IVTDSQYALGIIQ----AQPDKSESELVNQIIEQLIKKD 1111
Query: 243 NVRFIWVPSHVGIAGNEEADRLAKEAL 269
V WVP+H GI GNE+ D+L +
Sbjct: 1112 RVYLSWVPAHKGIGGNEQVDKLVSSGI 1138
>sp|Q0AE34|RNH_NITEC Ribonuclease H OS=Nitrosomonas eutropha (strain C91) GN=rnhA PE=3
SV=1
Length = 162
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 244 VRFIWVPSHVGIAGNEEADRLAKEALTS 271
V + WV H G AGNE ADRLA + + S
Sbjct: 128 VEWFWVRGHNGHAGNERADRLANQGVES 155
>sp|P24107|POL_HV2CA Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate CAM2) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 35.8 bits (81), Expect = 0.47, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 128 INISFQELLQKTPDSTVVYTDASKNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILF 187
+ ++F + P + YTD S N + + ++ L N + F
Sbjct: 1032 VRLAFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAF 1091
Query: 188 AIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFI 247
A+ + S +A +++ S + + Q S N I +I + ++ ++ +
Sbjct: 1092 AMALTDSG-----PKANIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEA---IYVA 1143
Query: 248 WVPSHVGIAGNEEADRLAKEAL 269
WVP+H GI GN+E D L + +
Sbjct: 1144 WVPAHKGIGGNQEVDHLVSQGI 1165
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 35.4 bits (80), Expect = 0.62, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 248 WVPSHVGIAGNEEADRLAKEALTSTHP 274
WVP+H GI GN EAD K+AL P
Sbjct: 1097 WVPAHKGIGGNTEADEGVKKALEQMAP 1123
>sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate ROD) GN=gag-pol PE=1 SV=3
Length = 1464
Score = 35.4 bits (80), Expect = 0.69, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 8/142 (5%)
Query: 128 INISFQELLQKTPDSTVVYTDASKNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTAILF 187
+ ++F + P + YTD S N + + ++ L N + F
Sbjct: 1034 VRLAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAF 1093
Query: 188 AIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFI 247
A+ + S N+ ++ S + + Q S + I +I + ++ ++ +
Sbjct: 1094 AMALTDSGPKVNI-----IVDSQYVMGISASQPTESESKIVNQIIEEMIKKEA---IYVA 1145
Query: 248 WVPSHVGIAGNEEADRLAKEAL 269
WVP+H GI GN+E D L + +
Sbjct: 1146 WVPAHKGIGGNQEVDHLVSQGI 1167
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 35.4 bits (80), Expect = 0.71, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 128 INISFQELLQKTPDSTVVYTDASKNDVAVS--SAFCSQDTKFSSRLHPLLSICNAELTAI 185
+ ++F + P + YTD S N + + + + K R+ + AEL A
Sbjct: 1032 VRLAFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYITDRGKDKVRILEQTTNQQAELEAF 1091
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVR 245
A+ ++ + +V+ S + + T Q S + I +I + ++ ++ +
Sbjct: 1092 AMAV-------TDSGPKVNIVVDSQYVMGIVTGQPAESESRIVNKIIEEMIKKEA---IY 1141
Query: 246 FIWVPSHVGIAGNEEADRLAKEAL 269
WVP+H GI GN+E D L + +
Sbjct: 1142 VAWVPAHKGIGGNQEIDHLVSQGI 1165
>sp|B3Q6U1|RNH_RHOPT Ribonuclease H OS=Rhodopseudomonas palustris (strain TIE-1) GN=rnhA
PE=3 SV=1
Length = 155
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 244 VRFIWVPSHVGIAGNEEADRLAKEALT 270
+R+ WV H G A NE AD+LA++ LT
Sbjct: 120 IRWHWVKGHAGHAENERADQLARDGLT 146
>sp|Q6N1Y3|RNH_RHOPA Ribonuclease H OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=rnhA PE=3 SV=1
Length = 155
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 244 VRFIWVPSHVGIAGNEEADRLAKEALT 270
+R+ WV H G A NE AD+LA++ LT
Sbjct: 120 IRWHWVKGHAGHAENERADQLARDGLT 146
>sp|A2BJ24|PYRB_HYPBU Aspartate carbamoyltransferase OS=Hyperthermus butylicus (strain
DSM 5456 / JCM 9403) GN=pyrB PE=3 SV=1
Length = 315
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 59 DSLQQLYERKSSYEKPLRIRGKL-LLEKYGIDHLDFLSPSPQTSAPWLIEPPPVDYSLRK 117
DSL+QL+E + LR RG++ LLE Y I L F PS +T + + + ++
Sbjct: 21 DSLEQLFEVADKFSSLLRERGRIPLLEGY-IVALAFFEPSTRTRLSF-------ETAAKR 72
Query: 118 FNKDT---DSKEEINISFQELLQKTPDSTVVYTD 148
DT S+E I+I+ E L T Y D
Sbjct: 73 LGADTIGFTSEEAISIAKGETLADTIRMLDSYAD 106
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.0 bits (79), Expect = 0.86, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLIL 236
AEL AI A+ S S VN I +DS AL +Q P E + +I
Sbjct: 1059 AELQAIYLALQDSGS----EVN-----IVTDSQYALGIIQ----AQPDKSESEIVNQIIE 1105
Query: 237 TNKSKLNVRFIWVPSHVGIAGNEEADRL 264
K V WVP+H GI GNE+ D+L
Sbjct: 1106 QLIQKERVYLSWVPAHKGIGGNEQVDKL 1133
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.0 bits (79), Expect = 0.86, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLIL 236
AEL AI A+ S S VN I +DS AL +Q P E + +I
Sbjct: 1059 AELQAIQLALQDSGS----EVN-----IVTDSQYALGIIQ----AQPDKSESELVNQIIE 1105
Query: 237 TNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
K V WVP+H GI GNE+ D+L +
Sbjct: 1106 QLIKKEKVYLSWVPAHKGIGGNEQVDKLVSAGI 1138
>sp|B0TZ91|RNH_FRAP2 Ribonuclease H OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=rnhA PE=3 SV=1
Length = 152
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
+K NV + WV H G GNE+AD LA +A+
Sbjct: 117 TKHNVTWSWVKGHSGNQGNEKADELANKAI 146
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 35.0 bits (79), Expect = 0.95, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
SK V WVP+H GI GNE+ D+L +
Sbjct: 1118 SKERVYLSWVPAHKGIGGNEQVDKLVSSGI 1147
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 35.0 bits (79), Expect = 0.96, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 186 LFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGE---IRDLILTNKSKL 242
L AIH ++ VN I +DS AL +Q P E + +I K
Sbjct: 1078 LQAIHLALQDSGLEVN-----IVTDSQYALGIIQ----AQPDKSESELVNQIIEQLIKKE 1128
Query: 243 NVRFIWVPSHVGIAGNEEADRLAKEAL 269
V WVP+H GI GNE+ D+L +
Sbjct: 1129 KVYLAWVPAHKGIGGNEQVDKLVSAGI 1155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,711,952
Number of Sequences: 539616
Number of extensions: 5714890
Number of successful extensions: 15405
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15302
Number of HSP's gapped (non-prelim): 118
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)