Query psy4967
Match_columns 354
No_of_seqs 254 out of 1435
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:26:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 2.2E-24 7.7E-29 182.9 11.9 123 140-271 5-151 (154)
2 3h08_A RNH (ribonuclease H); R 99.9 5.9E-24 2E-28 178.6 9.6 119 141-271 3-144 (146)
3 3qio_A GAG-POL polyprotein; RN 99.9 1.8E-23 6.3E-28 176.2 10.7 119 140-271 10-147 (150)
4 2kq2_A Ribonuclease H-related 99.9 8E-24 2.7E-28 178.0 5.8 125 140-272 4-138 (147)
5 2e4l_A Ribonuclease HI, RNAse 99.9 5.6E-23 1.9E-27 175.0 9.6 119 141-271 5-145 (158)
6 3p1g_A Xenotropic murine leuke 99.9 9.9E-23 3.4E-27 174.2 11.2 122 142-271 23-156 (165)
7 1jl1_A Ribonuclease HI; RNAse 99.9 6.2E-23 2.1E-27 174.2 9.2 119 141-271 3-143 (155)
8 1ril_A Ribonuclease H; hydrola 99.9 1.2E-22 4E-27 174.3 5.7 119 141-271 7-148 (166)
9 2lsn_A Reverse transcriptase; 99.9 2.3E-21 7.7E-26 165.6 11.2 122 141-271 6-163 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.8 3E-19 1E-23 148.0 10.9 118 141-271 2-137 (140)
11 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 6.9E-19 2.4E-23 178.2 13.1 116 140-269 434-555 (555)
12 3hst_B Protein RV2228C/MT2287; 99.8 1E-18 3.5E-23 145.3 11.3 120 142-271 3-133 (141)
13 2zd1_A Reverse transcriptase/r 99.8 3.6E-19 1.2E-23 180.3 10.2 116 140-268 437-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.8 1.4E-18 4.8E-23 146.1 8.9 116 143-271 2-134 (149)
15 1zbf_A Ribonuclease H-related 99.3 3.7E-13 1.3E-17 111.7 1.3 116 140-263 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 9.7E-11 3.3E-15 95.5 6.0 77 139-222 2-84 (134)
17 1rw3_A POL polyprotein; RNA an 79.2 0.56 1.9E-05 45.5 1.1 73 142-221 346-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 57.0 24 0.00082 33.6 7.3 72 142-215 324-400 (428)
19 2zd1_A Reverse transcriptase/r 21.8 2.8E+02 0.0096 27.0 8.5 91 126-219 299-406 (557)
20 2lnd_A De novo designed protei 20.3 90 0.0031 22.3 3.2 45 227-271 36-80 (112)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.91 E-value=2.2e-24 Score=182.87 Aligned_cols=123 Identities=27% Similarity=0.329 Sum_probs=96.0
Q ss_pred CCcEEEEeCCCCCCCC-----ceEEEE--eCC-eeeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCC
Q psy4967 140 PDSTVVYTDASKNDVA-----VSSAFC--SQD-TKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDS 211 (354)
Q Consensus 140 ~~~~~iytDGS~~~~~-----~G~a~~--~~~-~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS 211 (354)
++.++||||||+..++ +|+|+| .+. ...+..+...+|++.||+.|++.||+.+. ..+..+|.|+|||
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~-----~~~~~~v~i~tDS 79 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK-----TQNINKLVLYTNS 79 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHH-----HTTCCEEEEEESC
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHH-----hCCCceEEEEECc
Confidence 3568999999997542 788888 222 23455565568999999999999999994 3467899999999
Q ss_pred HHHHHHhcccC---------CC-------ChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 212 LSALQTLQNIF---------SL-------NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 212 ~~al~~i~~~~---------~~-------~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
++++++|..+. .. .++++++.+++ .+..|.|.|||||+|++|||.||+|||+|+..
T Consensus 80 ~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~----~~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 80 MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLT----QGMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHH----TTCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHH----cCCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 99999998741 11 12455555544 35679999999999999999999999999876
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.90 E-value=5.9e-24 Score=178.63 Aligned_cols=119 Identities=20% Similarity=0.150 Sum_probs=92.5
Q ss_pred CcEEEEeCCCCCCC--CceEEEE--eCCe--eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHH
Q psy4967 141 DSTVVYTDASKNDV--AVSSAFC--SQDT--KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSA 214 (354)
Q Consensus 141 ~~~~iytDGS~~~~--~~G~a~~--~~~~--~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~a 214 (354)
+.++||||||+..+ ..|+|++ .++. ..+..++ .+|++.||+.|++.||+.+ .. ..+|.|+|||+++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~-----~~--~~~v~I~tDS~~v 74 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEAL-----KE--PARVQLYSDSAYL 74 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTC-----SS--CCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhc-----Cc--cCcEEEEeChHHH
Confidence 46899999999864 3788877 4432 2333333 5799999999999999988 32 5899999999999
Q ss_pred HHHhcc-cC---------C-------CChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 215 LQTLQN-IF---------S-------LNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 215 l~~i~~-~~---------~-------~~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
++.|.. +. . ..++++++.+++.. ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 75 i~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~----~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 75 VNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL----HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH----SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh----CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 999987 21 0 12366677776654 579999999999999999999999999875
No 3
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.89 E-value=1.8e-23 Score=176.24 Aligned_cols=119 Identities=24% Similarity=0.344 Sum_probs=90.3
Q ss_pred CCcEEEEeCCCCCCC--CceEEEE-eCCeeeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHHHH
Q psy4967 140 PDSTVVYTDASKNDV--AVSSAFC-SQDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQ 216 (354)
Q Consensus 140 ~~~~~iytDGS~~~~--~~G~a~~-~~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~al~ 216 (354)
++.++||||||+..+ ..|+|++ ..+......+ ..+|++.||+.|++.||+.+ ..+|.|+|||+++++
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~---------~~~v~i~tDS~~v~~ 79 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS---------GLEVNIVTDSQYALG 79 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS---------CSEEEEEESCHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeCcHHHHH
Confidence 457999999999743 3777776 2222222333 46799999999999999875 378999999999999
Q ss_pred HhcccC-----------C-----CChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 217 TLQNIF-----------S-----LNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 217 ~i~~~~-----------~-----~~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
+|..+. . ..++++++.+++ .....|.|.|||||+|++|||.||+||++|+..
T Consensus 80 ~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l---~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQL---IKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHH---TTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHH---hhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 998752 0 112344443333 357899999999999999999999999999875
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.89 E-value=8e-24 Score=178.03 Aligned_cols=125 Identities=19% Similarity=0.116 Sum_probs=96.0
Q ss_pred CCcEEEEeCCCCCCCCceEEEE--eCCe--eeee-cC--CC--CCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeC
Q psy4967 140 PDSTVVYTDASKNDVAVSSAFC--SQDT--KFSS-RL--HP--LLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSD 210 (354)
Q Consensus 140 ~~~~~iytDGS~~~~~~G~a~~--~~~~--~~~~-~l--~~--~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sD 210 (354)
++.+.||||||+..+.+|+|+| .++. ..+. .. +. .+||+.||+.|++.||+.+++ .+. +|.|+||
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~-----~~~-~v~I~tD 77 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQ-----LGV-KIRILHD 77 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHH-----HTC-CCCBSSC
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHH-----CCC-eEEEEEC
Confidence 4578999999999977899987 3333 2233 22 22 368999999999999998853 234 8999999
Q ss_pred CHHHHHHhcccCC-CChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcCC
Q psy4967 211 SLSALQTLQNIFS-LNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTST 272 (354)
Q Consensus 211 S~~al~~i~~~~~-~~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~~ 272 (354)
|+.+.+.+.+.+. ..+....+.++++.+.. .|.|.|||||+|++|||.||+|||+|+...
T Consensus 78 S~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~--~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 78 YAGIAFWATGEWKAKNEFTQAYAKLMNQYRG--IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp CSTHHHHTTSSSSCCHHHHHHHHCGGGGGST--TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHhCCCccCCcchHHHHHHHHHhcC--CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 9988877766443 34455566666665433 899999999999999999999999999883
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.88 E-value=5.6e-23 Score=174.98 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=91.7
Q ss_pred CcEEEEeCCCCCCC--CceEEEE--eCCe--eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHH
Q psy4967 141 DSTVVYTDASKNDV--AVSSAFC--SQDT--KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSA 214 (354)
Q Consensus 141 ~~~~iytDGS~~~~--~~G~a~~--~~~~--~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~a 214 (354)
..++||||||+..+ ..|+|+| .++. ..+..++ .+|++.||+.|++.||+.+ .. ..+|.|+|||+++
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~-----~~--~~~v~I~tDS~~v 76 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEAL-----KE--PCKIILTSDSQYM 76 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTC-----SS--CCEEEEEECCHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHh-----cc--CCeEEEEeCHHHH
Confidence 46899999999853 3788877 3332 2233333 4789999999999999987 32 3899999999999
Q ss_pred HHHhccc--------C-CC-------ChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 215 LQTLQNI--------F-SL-------NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 215 l~~i~~~--------~-~~-------~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
+++|..+ . .. .++++++.+++ ....|.|.|||||+|++|||.||+|||+|+..
T Consensus 77 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~----~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 77 RQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAA----QLHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHH----TTSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHH----ccCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999882 1 11 13455555554 34699999999999999999999999999986
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.88 E-value=9.9e-23 Score=174.19 Aligned_cols=122 Identities=25% Similarity=0.209 Sum_probs=90.7
Q ss_pred cEEEEeCCCCC--CCCceEEEE--e-CCeeeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHHHH
Q psy4967 142 STVVYTDASKN--DVAVSSAFC--S-QDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQ 216 (354)
Q Consensus 142 ~~~iytDGS~~--~~~~G~a~~--~-~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~al~ 216 (354)
.+.||||||+. +|..|+|++ . +.......++..+||+.||+.|++.||+.+ ...++.|+|||+++++
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~--------~~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA--------EGKKLNVYTDSRYAFA 94 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT--------BTSEEEEEECCHHHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc--------cCceEEEEEchHHHHh
Confidence 58999999997 344677764 3 333222245567899999999999999988 2679999999999999
Q ss_pred HhcccCCCChh--HHHHHHHHHhhcCCCceEEEEeCCCCC-----CccchHHhHHHHHhhcC
Q psy4967 217 TLQNIFSLNPI--AGEIRDLILTNKSKLNVRFIWVPSHVG-----IAGNEEADRLAKEALTS 271 (354)
Q Consensus 217 ~i~~~~~~~~~--~~~i~~~~~~~~~~~~V~~~WVpgH~g-----i~gNe~AD~lAk~a~~~ 271 (354)
++-......++ ...+++++..+..+..|.|.|||||+| ++|||.||+|||+|+..
T Consensus 95 ~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 95 TAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMK 156 (165)
T ss_dssp HHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhc
Confidence 98211111111 122333434444678999999999999 99999999999999988
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.88 E-value=6.2e-23 Score=174.17 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=91.3
Q ss_pred CcEEEEeCCCCCCC--CceEEEE--eCCe--eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHH
Q psy4967 141 DSTVVYTDASKNDV--AVSSAFC--SQDT--KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSA 214 (354)
Q Consensus 141 ~~~~iytDGS~~~~--~~G~a~~--~~~~--~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~a 214 (354)
..++||||||+..+ ..|+|+| .++. ..+..+ ..+|++.||+.|++.||+.+ .. ..+|.|+|||+++
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~-----~~--~~~v~I~tDS~~v 74 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEAL-----KE--HAEVILSTDSQYV 74 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTC-----CS--CCEEEEEECCHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHh-----Cc--CCcEEEEeCHHHH
Confidence 35899999999853 3788877 3332 233333 35789999999999999988 32 3799999999999
Q ss_pred HHHhccc---------CCC-------ChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 215 LQTLQNI---------FSL-------NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 215 l~~i~~~---------~~~-------~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
++.|..+ ... .++++++.+++ ....|.|.|||||+|++|||.||+|||+|+..
T Consensus 75 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~----~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 143 (155)
T 1jl1_A 75 RQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL----GQHQIKWEWVKGHAGHPENERADELARAAAMN 143 (155)
T ss_dssp HHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHT----TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHH----ccCceEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999873 111 12444444443 34689999999999999999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.86 E-value=1.2e-22 Score=174.34 Aligned_cols=119 Identities=18% Similarity=0.124 Sum_probs=91.3
Q ss_pred CcEEEEeCCCCCCC--CceEEEE--eCCe--eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHH
Q psy4967 141 DSTVVYTDASKNDV--AVSSAFC--SQDT--KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSA 214 (354)
Q Consensus 141 ~~~~iytDGS~~~~--~~G~a~~--~~~~--~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~a 214 (354)
..++||||||+..+ ..|+|+| .++. ..+... ..+|++.||+.|++.||+.+ .. ...|.|+|||+++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~-----~~--~~~v~I~tDS~~v 78 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKAL-----KE--PCEVDLYTDSHYL 78 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSC-----CS--CCEEEEECCCHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHh-----cc--CCeEEEEeChHHH
Confidence 35799999999854 3788877 3322 222222 35789999999999999987 32 3589999999999
Q ss_pred HHHhcc----------cCCC-------ChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 215 LQTLQN----------IFSL-------NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 215 l~~i~~----------~~~~-------~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
++.|.. +... .++++++.+++. ...|.|.|||||+|++|||.||+|||+|+..
T Consensus 79 i~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~----~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 148 (166)
T 1ril_A 79 KKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA----PHRVRFHFVKGHTGHPENERVDREARRQAQS 148 (166)
T ss_dssp HHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT----TSEEECCCCCGGGSCTHHHHHHHHHHHHHTS
T ss_pred HHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh----cCeEEEEEeeCCCCchhHHHHHHHHHHHHHH
Confidence 999988 2221 135555555543 4699999999999999999999999999988
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.85 E-value=2.3e-21 Score=165.61 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=89.9
Q ss_pred CcEEEEeCCCCCCC--C-----ceEEEE--e-CC---eeeeecC-CCCCchHHHHHHHHHHHHHHHHHhccccCCCceEE
Q psy4967 141 DSTVVYTDASKNDV--A-----VSSAFC--S-QD---TKFSSRL-HPLLSICNAELTAILFAIHFSISAHLNNVNRAYLV 206 (354)
Q Consensus 141 ~~~~iytDGS~~~~--~-----~G~a~~--~-~~---~~~~~~l-~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~ 206 (354)
..++||||||+..+ . .|+|+| . +. ....+.. ....+++.||+.|+..||+.+++ ...+|.
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~------~~~~v~ 79 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALK------IPGPVL 79 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHH------SSSCEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhc------CCCeEE
Confidence 46899999999743 2 788887 2 22 2223332 24567888999999999888743 345799
Q ss_pred EEeCCHHHHHHhccc---------CC-------CChhHHHHHHHHHhhcCCCceEEEEeCCCCCC------ccchHHhHH
Q psy4967 207 ICSDSLSALQTLQNI---------FS-------LNPIAGEIRDLILTNKSKLNVRFIWVPSHVGI------AGNEEADRL 264 (354)
Q Consensus 207 I~sDS~~al~~i~~~---------~~-------~~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi------~gNe~AD~l 264 (354)
|+|||++++++|..+ .. ..++++++.+++.. ...|.|.|||||+|+ +|||.||+|
T Consensus 80 I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~---~~~v~~~~VkgH~g~~~~~~~~gNe~AD~L 156 (165)
T 2lsn_A 80 VITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSM---KPDITIQHEKGHQPTNTSIHTEGNALADKL 156 (165)
T ss_dssp EEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHH---CTTCEEEECCSSSCSSSCHHHHHHHHHHHH
T ss_pred EEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhC---CCCEEEEEEeCCCCccCCCCChHHHHHHHH
Confidence 999999999999753 11 12366777666654 568999999999995 589999999
Q ss_pred HHHhhcC
Q psy4967 265 AKEALTS 271 (354)
Q Consensus 265 Ak~a~~~ 271 (354)
|++|+..
T Consensus 157 A~~gA~~ 163 (165)
T 2lsn_A 157 ATQGSYV 163 (165)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 9999854
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.79 E-value=3e-19 Score=148.03 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=89.0
Q ss_pred CcEEEEeCCCCCCC--CceEEEE--e--CCe--eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCc----eEEEE
Q psy4967 141 DSTVVYTDASKNDV--AVSSAFC--S--QDT--KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRA----YLVIC 208 (354)
Q Consensus 141 ~~~~iytDGS~~~~--~~G~a~~--~--~~~--~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~----~i~I~ 208 (354)
..++||||||+..+ ..|+|++ + +.. ..+..++ .+|++.||+.|++.||+.+. ..+.. +|.|+
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~-----~~~~~~~~~~v~i~ 75 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQ-----MFGDKLVDMEVEVR 75 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHG-----GGGGGGTTCEEEEE
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHH-----HcCCCCCCceEEEE
Confidence 35899999999853 4788877 3 222 2233333 47999999999999999994 33455 99999
Q ss_pred eCCHHHHHHhcccCC-CCh----hHHHHHHH-HHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 209 SDSLSALQTLQNIFS-LNP----IAGEIRDL-ILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 209 sDS~~al~~i~~~~~-~~~----~~~~i~~~-~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
|||+++++.+.++.. .+. ++.++.++ +. ....|.|.||| .++||.||+|||+|+..
T Consensus 76 tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~---~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 76 MDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKME---RVPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp ESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHH---HCTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred eChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhc---CCCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 999999999998664 332 33445555 43 35699999999 59999999999999865
No 11
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.78 E-value=6.9e-19 Score=178.16 Aligned_cols=116 Identities=25% Similarity=0.363 Sum_probs=93.0
Q ss_pred CCcEEEEeCCCCCCCC--ceEEEE--eCCeeeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHHH
Q psy4967 140 PDSTVVYTDASKNDVA--VSSAFC--SQDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSAL 215 (354)
Q Consensus 140 ~~~~~iytDGS~~~~~--~G~a~~--~~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~al 215 (354)
++.++||||||+..++ .|+|++ .++. ....+ ..+||+.||+.|++.||+. ....+.|+|||++|+
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~TNn~aEl~A~i~aL~~---------~~~~v~I~tDS~~v~ 502 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKD-KVKKL-EQTTNQQAELEAFAMALTD---------SGPKVNIIVDSQYVM 502 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHT---------SCSEEEEEESCHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCE-eeccC-CCCCHHHHHHHHHHHHHHc---------CCCeEEEEEehHHHH
Confidence 4569999999998543 677877 3332 23333 3579999999999999986 357899999999999
Q ss_pred HHhcccCC--CChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhh
Q psy4967 216 QTLQNIFS--LNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269 (354)
Q Consensus 216 ~~i~~~~~--~~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~ 269 (354)
+++.++.. ..++.+++.+++.. ...|.|.|||||+|++|||.||+|||+|+
T Consensus 503 ~~i~~~~~~~~~~l~~~~~~~~~~---~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 503 GIVASQPTESESKIVNQIIEEMIK---KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHTCCSEESCHHHHHHHHHHHH---CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHhcccccccHHHHHHHHHHhcc---CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 99998763 45677777666654 68899999999999999999999999985
No 12
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.78 E-value=1e-18 Score=145.27 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=89.5
Q ss_pred cEEEEeCCCCCCC--CceEEEE--eC--C-e--eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCH
Q psy4967 142 STVVYTDASKNDV--AVSSAFC--SQ--D-T--KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSL 212 (354)
Q Consensus 142 ~~~iytDGS~~~~--~~G~a~~--~~--~-~--~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~ 212 (354)
.++||||||+..+ ..|+|++ +. + . ..+..+ ..+|++.||+.|++.||+.+.+ .+..+|.|+|||+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~-----~~~~~v~i~tDS~ 76 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVK-----LGATEAAVLMDSK 76 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHH-----HTCSEEEEEESCH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHH-----CCCceEEEEeChH
Confidence 4799999999854 4788876 32 2 2 223333 3679999999999999999953 3568999999999
Q ss_pred HHHHHhcccC-CCChhHHHHHHHHHh-hcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 213 SALQTLQNIF-SLNPIAGEIRDLILT-NKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 213 ~al~~i~~~~-~~~~~~~~i~~~~~~-~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
++++.+.+.+ ..+.....+.+.+.. ......|.|.||| .++|+.||+|||+|+..
T Consensus 77 ~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 77 LVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVP----RARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECC----GGGCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcC----CcccHHHHHHHHHHHHH
Confidence 9999999854 344433333222222 2356899999999 48999999999999977
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.78 E-value=3.6e-19 Score=180.29 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=89.5
Q ss_pred CCcEEEEeCCCCCCC--CceEEEE-eCCeeeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHHHHH
Q psy4967 140 PDSTVVYTDASKNDV--AVSSAFC-SQDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQ 216 (354)
Q Consensus 140 ~~~~~iytDGS~~~~--~~G~a~~-~~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~al~ 216 (354)
++.++||||||+..+ ..|+|++ ..+....... ..+||+.||+.|++.||+.+ ..++.|+|||++|++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~---------~~~v~I~tDS~~vi~ 506 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS---------GLEVNIVTDSQYALG 506 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS---------CSEEEEEECCHHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeChHHHHH
Confidence 346899999998743 3677776 2222222233 35799999999999999987 468999999999999
Q ss_pred HhcccCCC--ChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHh
Q psy4967 217 TLQNIFSL--NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEA 268 (354)
Q Consensus 217 ~i~~~~~~--~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 268 (354)
++.++... .++++++.+.+.. ...|.|.|||||+|++|||.||+|||+|
T Consensus 507 ~i~~~~~~~~~~l~~~~~~~l~~---~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 507 IIQAQPDKSESELVNQIIEQLIK---KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHTTCCSEESSHHHHHHHHHHHH---CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHhcCCccCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99998754 4577766655554 5689999999999999999999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.76 E-value=1.4e-18 Score=146.11 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=88.3
Q ss_pred EEEEeCCCCCC---CCceE-EEE--e-CCeee--eecCC---CCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeC
Q psy4967 143 TVVYTDASKND---VAVSS-AFC--S-QDTKF--SSRLH---PLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSD 210 (354)
Q Consensus 143 ~~iytDGS~~~---~~~G~-a~~--~-~~~~~--~~~l~---~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sD 210 (354)
+.||||||+.+ +.+|+ |++ + +.... +...+ ..+|++.||+.|++.||+.+.. .+..+|.|+||
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~-----~g~~~v~i~tD 76 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLR-----LGISSPIIKGD 76 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHH-----HTCCSCEEEES
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHH-----cCCCEEEEEeC
Confidence 68999999972 45775 866 3 33222 22222 3689999999999999999953 35679999999
Q ss_pred CHHHHHHhcccCC-CC----hhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 211 SLSALQTLQNIFS-LN----PIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 211 S~~al~~i~~~~~-~~----~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
|+++++.+.++.. .+ ++++++..++.. . .|.|.|||+ ++|+.||+|||+|+..
T Consensus 77 S~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~---~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 77 SQLVIKQMNGEYKVKAKRIIPLYEKAIELKKK---L-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp CHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHH---H-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCccccCCHHHHHHHHHHHHHHhc---C-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 9999999998754 22 355566666554 2 599999997 6999999999999987
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.30 E-value=3.7e-13 Score=111.73 Aligned_cols=116 Identities=12% Similarity=-0.036 Sum_probs=80.8
Q ss_pred CCcEEEEeCCCCCC--CCceEEEE---eCCe-eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCHH
Q psy4967 140 PDSTVVYTDASKND--VAVSSAFC---SQDT-KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSLS 213 (354)
Q Consensus 140 ~~~~~iytDGS~~~--~~~G~a~~---~~~~-~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~~ 213 (354)
+..+.||||||+.. +..|+|+| .+.. ..+..++ .+||+.||+.|++.||+.+.+ .+. +|.|+|||++
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~-----~~~-~v~i~tDS~~ 81 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKE-----RNS-RKPIYSNSQT 81 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHH-----TTC-CCCEEESCHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHh-----CCC-eEEEEEehHH
Confidence 34678999999974 34788887 2222 2223333 579999999999999999953 234 8999999999
Q ss_pred HHHHhcccCCC---------ChhHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhH
Q psy4967 214 ALQTLQNIFSL---------NPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADR 263 (354)
Q Consensus 214 al~~i~~~~~~---------~~~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~ 263 (354)
+++.+.+...+ .++++.+..+..-+ ....++...|.-|++.-||.-||.
T Consensus 82 vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~-~~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 82 AIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWL-NTHTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHH-HHCCCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHH-hhCCCceeEEEeccCccCcCcccc
Confidence 99999887621 12444444433221 234556666777888889999884
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.09 E-value=9.7e-11 Score=95.53 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=56.5
Q ss_pred CCCcEEEEeCCCCCCC--CceEEEE--e-CCe-eeeecCCCCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCCH
Q psy4967 139 TPDSTVVYTDASKNDV--AVSSAFC--S-QDT-KFSSRLHPLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDSL 212 (354)
Q Consensus 139 ~~~~~~iytDGS~~~~--~~G~a~~--~-~~~-~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS~ 212 (354)
.++...||||||+..+ ..|+|+| . +.. ..+..++ .+||+.||+.|++.||+.+.+ .+. .+.|+|||+
T Consensus 2 ep~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~-----~~~-~v~i~tDSq 74 (134)
T 4htu_A 2 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKE-----RNS-RKPIYSNSQ 74 (134)
T ss_dssp CCCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHH-----TTC-CCCEEESCH
T ss_pred CccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHh-----CCC-CEEEEcchH
Confidence 3567789999999853 3778544 3 332 2333333 579999999999999999943 222 389999999
Q ss_pred HHHHHhcccC
Q psy4967 213 SALQTLQNIF 222 (354)
Q Consensus 213 ~al~~i~~~~ 222 (354)
+|++.|.++.
T Consensus 75 yVi~wi~~~~ 84 (134)
T 4htu_A 75 TAIKWVKDKK 84 (134)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 9999998753
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=79.15 E-value=0.56 Score=45.49 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=45.9
Q ss_pred cEEEEeCCCCCCCCceEEEE--eCC-e----eeeecCC---CCCchHHHHHHHHHHHHHHHHHhccccCCCceEEEEeCC
Q psy4967 142 STVVYTDASKNDVAVSSAFC--SQD-T----KFSSRLH---PLLSICNAELTAILFAIHFSISAHLNNVNRAYLVICSDS 211 (354)
Q Consensus 142 ~~~iytDGS~~~~~~G~a~~--~~~-~----~~~~~l~---~~~t~~~AEl~Ai~~aL~~~~~~~~~~~~~~~i~I~sDS 211 (354)
.+.+|||+|. +++|+... .++ . ..+..+. ..-+++..|+.||..|++....+ ..+..+.|+||+
T Consensus 346 ~~~l~~DAS~--~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~y----l~g~~~~v~tDh 419 (455)
T 1rw3_A 346 PFELFVDEKQ--GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKL----TMGQPLVIKAPH 419 (455)
T ss_dssp TTSCEEEEEE--CSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGG----GCSSCEEEECSS
T ss_pred cEEEEEeccC--CcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHH----cCCCcEEEEecC
Confidence 5689999984 34443222 111 1 1222332 33466789999999999988532 346799999999
Q ss_pred HHHHHHhccc
Q psy4967 212 LSALQTLQNI 221 (354)
Q Consensus 212 ~~al~~i~~~ 221 (354)
. ++.-+.+.
T Consensus 420 ~-~~~~l~~~ 428 (455)
T 1rw3_A 420 A-VEALVKQP 428 (455)
T ss_dssp C-TTTTSSST
T ss_pred h-HHHHhCCC
Confidence 6 55555543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=57.02 E-value=24 Score=33.61 Aligned_cols=72 Identities=1% Similarity=-0.142 Sum_probs=40.0
Q ss_pred cEEEEeCCCCCCCCceEEEEe-C-CeeeeecC--CCCCchHHHHHHH-HHHHHHHHHHhccccCCCceEEEEeCCHHHH
Q psy4967 142 STVVYTDASKNDVAVSSAFCS-Q-DTKFSSRL--HPLLSICNAELTA-ILFAIHFSISAHLNNVNRAYLVICSDSLSAL 215 (354)
Q Consensus 142 ~~~iytDGS~~~~~~G~a~~~-~-~~~~~~~l--~~~~t~~~AEl~A-i~~aL~~~~~~~~~~~~~~~i~I~sDS~~al 215 (354)
.+.++||+|.. |..|+.... + ....+..+ ......+.-|+.| ++.||+....+- .+.....++++||++..-
T Consensus 324 ~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl-~G~~~~~~i~~td~~~~~ 400 (428)
T 2zd1_B 324 DLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-WGKTPKFKLPIQKETWET 400 (428)
T ss_dssp CCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHH-HSSCCEEEESSCHHHHHH
T ss_pred CEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEE-ECCCCcEECCccHHHHHH
Confidence 57999999942 122322222 2 22223222 2233445667777 999998664320 233456778899987543
No 19
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=21.79 E-value=2.8e+02 Score=26.98 Aligned_cols=91 Identities=4% Similarity=-0.147 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHh---c-----C---CCcEEEEeCCCCCCCCceEEEEe-CCe-e--eeecCCCCCchHHHHHHH-HHHHH
Q psy4967 126 EEINISFQELLQ---K-----T---PDSTVVYTDASKNDVAVSSAFCS-QDT-K--FSSRLHPLLSICNAELTA-ILFAI 189 (354)
Q Consensus 126 ~~~~~~~~~~~~---~-----~---~~~~~iytDGS~~~~~~G~a~~~-~~~-~--~~~~l~~~~t~~~AEl~A-i~~aL 189 (354)
++.++.|.++.+ . . ...+.+|||+|.. |.+|+.... ++. . ..+.-......+.-|+.| ++.+|
T Consensus 299 ~~~~~af~~lK~~L~~~p~L~~pd~~~~~~l~~das~~-g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l 377 (557)
T 2zd1_A 299 EEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKI 377 (557)
T ss_dssp HHHHHHHHHHHHHTSSCCCBCCCCTTSCCEEEEEEEET-TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccceeecCCCCCEEEEEecCCC-CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHh
Confidence 345666666544 1 1 2257899999853 112333332 322 1 122223334556778888 88988
Q ss_pred HHHHHhccccCCCceEEE-EeCCHHHHHHhc
Q psy4967 190 HFSISAHLNNVNRAYLVI-CSDSLSALQTLQ 219 (354)
Q Consensus 190 ~~~~~~~~~~~~~~~i~I-~sDS~~al~~i~ 219 (354)
+....+- .+.. ..+.+ ++|++....-..
T Consensus 378 ~~~~~~l-~g~~-p~~~vp~~~~~~~~~~~~ 406 (557)
T 2zd1_A 378 TTESIVI-WGKT-PKFKLPIQKETWETWWTE 406 (557)
T ss_dssp HHHHHHH-HSSC-CEEEESBCHHHHHHHHHH
T ss_pred hhhheEE-eCCC-CCEECCCcHHHHHHHhhh
Confidence 7653210 1111 24555 788776544433
No 20
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.29 E-value=90 Score=22.28 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhcCCCceEEEEeCCCCCCccchHHhHHHHHhhcC
Q psy4967 227 IAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTS 271 (354)
Q Consensus 227 ~~~~i~~~~~~~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~~~ 271 (354)
..++|+++++.++...+--+.+|.|-+-..-||.-.++-|++..-
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsy 80 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSY 80 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEE
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcch
Confidence 357888998887666666677898887777788888888887754
Done!