RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4967
(354 letters)
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 61.2 bits (149), Expect = 8e-12
Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 141 DSTVVYTDASKND-------VAVSSAFCSQDTKFSSRLHPLLSICN--AELTAILFAIHF 191
VYTD S + V + + ++ N E+ A L+A+
Sbjct: 5 TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKK 64
Query: 192 SISAHLNNVNRAYLVICSDSLSALQTLQNIFSLN-PIAGEIRDLILTNKSKLNVRFIWVP 250
+ + + I D + L+ N+ + F V
Sbjct: 65 ASQLGVK------IRILHDYAGIAFWATGEWKAKNEFTQAYAKLM--NQYRGIYSFEKVK 116
Query: 251 SHVGIAGNEEADRLAKEAL 269
+H G N+ D AK AL
Sbjct: 117 AHSGNEFNDYVDMKAKSAL 135
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 58.7 bits (142), Expect = 1e-10
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 16/136 (11%)
Query: 144 VVYTD--ASKND---VAVSSAFCSQDTKFSSRLHPLLSICNAELTAILFAIHFSISAHLN 198
YTD + + A ++ + ++ L S AEL A+ A+ + LN
Sbjct: 25 TWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLN 84
Query: 199 NVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIRDLILTNKSKLNVRFIWVPSHVG---- 254
+ S A + + EI L+ + I P H
Sbjct: 85 ------VYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSA 138
Query: 255 -IAGNEEADRLAKEAL 269
GN AD+ A+EA
Sbjct: 139 EARGNRMADQAAREAA 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 4e-10
Identities = 68/401 (16%), Positives = 111/401 (27%), Gaps = 157/401 (39%)
Query: 6 RLALGAFKSSPIPSILSEA---GEPPLSYRREILTCNY-LFNTQRNPKHFLSPLLTDDSL 61
R+ S L A G L +F Q N + + L
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQL----------VAIFGGQGNTDDYF------EEL 173
Query: 62 QQLYERKSSYEKPLRIRGKLLLEKYGIDHLDFLSPSPQTSAP----------WLIEP--- 108
+ LY+ +Y L L++ + L L + + WL P
Sbjct: 174 RDLYQ---TY-HVLV---GDLIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 109 PPVDYSLRKFNKDTDSKEEINISF------Q--------ELLQKTPD--------STVV- 145
P DY L I IS Q +LL TP +T
Sbjct: 226 PDKDYLLS-----------IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 146 -----------------YTDASKNDVAVSSAF-----CSQ---DTKFSSRLH-------- 172
+ + + A++ F C + +T +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRK--AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 173 ----PLLSICNAELTAILFAI-----------HFSISAHLNNVNRAYLVICS--DSLSAL 215
P+LSI N + + IS L N + V+ SL L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNL-VVSGPPQSLYGL 389
Query: 216 QT-LQNIFSLNPIAGEIRDLILTNKSKLNV--RF--IWVPSHVGIAGNEEADRLAKEALT 270
L+ + P +G + I ++ KL RF + P H + A L + L
Sbjct: 390 NLTLRKAKA--P-SGLDQSRIPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKDLV 444
Query: 271 STHPTIN----KIPIPDYKAYSKRKILSAWNSEWHNLQNNK 307
+ + N +IP+ Y + +L+
Sbjct: 445 KNNVSFNAKDIQIPV-----YD--------TFDGSDLRVLS 472
Score = 39.6 bits (92), Expect = 0.002
Identities = 43/240 (17%), Positives = 76/240 (31%), Gaps = 72/240 (30%)
Query: 63 QLYERKSSYEKPLRIRG-KLLLEKYGIDHLDFLSPSPQTSAPWLIEPPP-----VDYSLR 116
LY+ S + + R + YG LD + +P + +YS
Sbjct: 1634 DLYK-TSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIRENYSAM 1691
Query: 117 KFNKDTDSKEEINISFQELLQKTPDSTVVYTDASKNDVAVSSAFCSQDTKFSSRLHP-LL 175
F D K + F+E+ + + YT S+ + S T+F+ P L
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTS----YTFRSEKGL------LSA-TQFTQ---PALT 1737
Query: 176 SICNAELTAI----------LFAIHFSI---SAHLNNVNRAYLVICSDSLS---AL---- 215
+ A + FA H S+ +A L +D +S +
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGH-SLGEYAA---------LASLADVMSIESLVEVVF 1787
Query: 216 ---QTLQNIFSLNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEA-----DRLAKE 267
T+Q + + +I N P V + ++EA +R+ K
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAIN-----------PGRVAASFSQEALQYVVERVGKR 1836
Score = 33.5 bits (76), Expect = 0.12
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 34/142 (23%)
Query: 228 AGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPD---- 283
A R L L++ S L + VP+ A +L +E P + D
Sbjct: 3 AYSTRPLTLSHGS-LEHVLL-VPTASFFI----ASQL-QEQFNKILPEPTEGFAADDEPT 55
Query: 284 --------YKAYSKRKILSAWNSEWHNLQNNKLQEIKLENKPWNPPYLILYYKNEIHSLI 335
+ Y + + ++ + N L E EN YL N+IH+L
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENC-----YL---EGNDIHALA 105
Query: 336 HISHFIVHTLIA-----LKEYL 352
T + +K Y+
Sbjct: 106 AKLLQENDTTLVKTKELIKNYI 127
Score = 30.4 bits (68), Expect = 1.2
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 33/120 (27%)
Query: 133 QELLQKTPDSTVVYTDASKNDVAVSSAFCSQDTKF-----SSRLHPLLSICNAELTAILF 187
Q + + Y + N V+++F + ++ R L+ I N
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-------- 1845
Query: 188 AIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPI-AGEIRDLILTNKSKLNVRF 246
N N+ Y + + L AL T+ N+ LN I +I D+I +L
Sbjct: 1846 ---------YNVENQQY--VAAGDLRALDTVTNV--LNFIKLQKI-DII-----ELQKSL 1886
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 49.1 bits (118), Expect = 2e-07
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 268
++++++ VP H G GNEEADRLA+E
Sbjct: 120 QGMDIQWMHVPGHSGFIGNEEADRLAREG 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 2e-07
Identities = 56/381 (14%), Positives = 114/381 (29%), Gaps = 87/381 (22%)
Query: 23 EAGEPPLSYRREILTCNY-LFNTQRNPKH---FLSPLLTDDSLQQLYERKSSYEKPLRIR 78
E GE Y+ +IL+ F + K +L+ + + + K + LR+
Sbjct: 10 ETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 79 GKLLLEKYGIDHLDFLSPSPQTSAPWLIEP-------PPVDYSL------------RKFN 119
LL ++ + F+ + + +L+ P P + + + F
Sbjct: 69 WTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 120 KDTDSKEEINISFQELLQK-TPDSTV-----------VYTDASKNDVAVSSAFC------ 161
K S+ + + ++ L + P V V
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 162 --SQDTKFSSRLHPLLSIC---NAELTAILFAIHFSISAHLNNVNRA--YLVICSDSLSA 214
+ L L + + T+ +I ++++ L+ +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 215 LQTLQNIFS---LNPIAGEIRDLILT-NKSKLNVRFIWVPSHVGIAG------------- 257
L L N+ + N + L+ T K + +H+ +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 258 -----NEEADRLAKEALTSTHP-TINKIPIPDYKAYSKRKILSAWNSEWHNLQNNKLQEI 311
+ L +E LT T+P ++ I A S R L+ W+ W ++ +KL I
Sbjct: 307 LLKYLDCRPQDLPREVLT-TNPRRLSII------AESIRDGLATWD-NWKHVNCDKLTTI 358
Query: 312 ---KLENKPWNPPYLILYYKN 329
L P +
Sbjct: 359 IESSLNV--LEPAEYRKMFDR 377
Score = 31.7 bits (71), Expect = 0.38
Identities = 40/280 (14%), Positives = 73/280 (26%), Gaps = 97/280 (34%)
Query: 11 AFKSSPIPSILSEAGEPPLSYRREILTCNYLFNTQRNPKH-----FLSPLLTDDSLQQLY 65
++P LS E S R + T + + + L+ L + ++++
Sbjct: 322 VLTTNPR--RLSIIAE---SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMF 375
Query: 66 ER--------------------KSSYEKPLRI----RGKLLLEK------YGID--HLDF 93
+R + + L+EK I +L+
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 94 LSPS----------------PQTSAPWLIEPPPVD--------YSLRKFNKD--TDSKEE 127
P+T + PP +D + L+
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 128 INISFQELLQK-TPDSTVVYTDASKNDVAV-----SSAFCSQDTKFSSRLHPLLSICNAE 181
+ + F+ L QK DST S + C D K+ ++ +L
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL------ 549
Query: 182 LTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQ-TLQN 220
F N +ICS L+ L
Sbjct: 550 --------DFLPKIEEN-------LICSKYTDLLRIALMA 574
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 47.2 bits (113), Expect = 7e-07
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 268
K V WVP+H GI GNE+ D+L
Sbjct: 116 KKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 47.5 bits (113), Expect = 4e-06
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN--IFSLNPIAGEIRDLILT 237
EL AI A+ S VN I +DS AL +Q S + + +I + ++
Sbjct: 479 TELQAIYLALQDSGL----EVN-----IVTDSQYALGIIQAQPDKSESELVNQIIEQLI- 528
Query: 238 NKSKLNVRFIWVPSHVGIAGNEEADRL 264
K V WVP+H GI GNE+ D+L
Sbjct: 529 --KKEKVYLAWVPAHKGIGGNEQVDKL 553
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 44.0 bits (105), Expect = 1e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPD 283
+ +++ WV H G NE AD LA+ A + D
Sbjct: 112 GQHQIKWEWVKGHAGHPENERADELARAA-------AMNPTLED 148
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 43.2 bits (103), Expect = 2e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 268
+ V F V H N AD LA+ A
Sbjct: 113 TLHRVTFHKVKGHSDNPYNSRADELARLA 141
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 43.3 bits (103), Expect = 2e-05
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPDYKA 286
+ VRF +V H G NE DR A+ S K P P
Sbjct: 117 APHRVRFHFVKGHTGHPENERVDREARRQAQS----QAKTPCPPRAP 159
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 42.9 bits (102), Expect = 3e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 240 SKLNVRFIWVPSHVGIAGNEEADRLAKEA 268
+ + WV H G A NE D+LA+ A
Sbjct: 114 QLHQIDWRWVKGHAGHAENERCDQLARAA 142
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 42.0 bits (99), Expect = 5e-05
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF-----SLNPIAGEIRDL 234
AE + ++ + + + + +I DS ++ + + + P+ + +L
Sbjct: 51 AEYSGLICLME-----TMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIEL 105
Query: 235 ILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
KLN IWVP N+EADRL++ A
Sbjct: 106 K----KKLNATLIWVPR----EENKEADRLSRVAY 132
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 44.0 bits (104), Expect = 5e-05
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQN--IFSLNPIAGEIRDLILT 237
AEL A A+ S VN I DS + + + S + I +I + ++
Sbjct: 476 AELEAFAMALTDSGP----KVN-----IIVDSQYVMGIVASQPTESESKIVNQIIEEMI- 525
Query: 238 NKSKLNVRFIWVPSHVGIAGNEEADRL 264
K + WVP+H GI GN+E D L
Sbjct: 526 --KKEAIYVAWVPAHKGIGGNQEVDHL 550
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 40.7 bits (96), Expect = 1e-04
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 180 AELTAILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIF-----SLNPIAGEIRDL 234
AE ++ + ++ + DS ++ + + L + + + L
Sbjct: 49 AEYRGLIAGLDDAVKLGATEAA-----VLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQAL 103
Query: 235 ILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
+ + WVP N ADRLA +A+
Sbjct: 104 A---SQFRRINYEWVPRA----RNTYADRLANDAM 131
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 38.7 bits (91), Expect = 6e-04
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 224 LNPIAGEIRDLILTNKSKLNVRFIWVPSHVGIAGNEEADRLAKEAL 269
L +I + K+ V H+ N AD L EA+
Sbjct: 96 LKEKFAKIAHI------KMERVPNLVFVHIPREKNARADELVNEAI 135
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.93
Identities = 7/62 (11%), Positives = 25/62 (40%), Gaps = 20/62 (32%)
Query: 255 IAGNEEADRLAKEALTSTHPTINKIPIPDYKAYSKRKILSAWNSEWHNLQNNKLQEIKLE 314
+ + A ++ ++ + +K+ + EW+ Q+ ++++ K+
Sbjct: 98 LQELDAASKVMEQEW---------------REKAKKDL-----EEWNQRQSEQVEKNKIN 137
Query: 315 NK 316
N+
Sbjct: 138 NR 139
>3kog_A Putative pore-forming toxin; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative;
1.85A {Bacteroides vulgatus atcc 8482}
Length = 256
Score = 28.8 bits (63), Expect = 2.6
Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 12/229 (5%)
Query: 125 KEEINISFQELLQKTPDSTVVYTDASKNDVAVSSAFCSQDTKFSSRLHPLLSICNAELTA 184
KE I I + K + VV + DV S+ + P L+ + + A
Sbjct: 5 KENIGIEVTPVNAKFIITPVVIDATTGTDVTQSAEISFSKGNGTYEGTPELASESININA 64
Query: 185 ILFAIHFSISAHLNNVNRAYLVICSDSLSALQTLQNIFSLNPIAGEIR-DLILTNKSKLN 243
+ S S + + + L F + + + + K N
Sbjct: 65 KYKGMTGSASVTIPALKAGQFG----AKEVTIILSENFFAQEESSNSQIETTKHSGFKNN 120
Query: 244 VRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPDYKAYSKRKILSAWNSEWHNL 303
W V E ++ + + N I D R+ ++ L
Sbjct: 121 TSDYWYYITVTYTKKEGSEVIKNDYEGDDSEIKNII---DAYNKGVRE-DKVTLNDVQVL 176
Query: 304 QNNKLQEIKLENKPWNPPYLILY--YKNEIHSLIHISHFIVHTLIALKE 350
+++ + ++ Y I+ K + + + + +T+++ K
Sbjct: 177 AHSR-FSVFVDYMKTTSVYQIIEKSPKRDGNPVASFTVDSYNTIVSPKN 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,264,469
Number of extensions: 303015
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 26
Length of query: 354
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,049,298
Effective search space: 1048768182
Effective search space used: 1048768182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)