BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4969
(66 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 2 SRTIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPD 60
S I+D T L + GELC+KG + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 405 SAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKD 464
Query: 61 GTHFI 65
G FI
Sbjct: 465 GYFFI 469
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
+ID T L + GE+C+KG + + GY N EATKE++D++GWLHTGD+ Y +
Sbjct: 375 VIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434
Query: 64 FI 65
FI
Sbjct: 435 FI 436
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
+ID T L + GE+C+KG + + GY N EATKE++D++GWLHTGD+ Y +
Sbjct: 375 VIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434
Query: 64 FI 65
FI
Sbjct: 435 FI 436
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
+ID T L + GE+C+KG + + GY N EATKE++D++GWLHTGD+ Y +
Sbjct: 375 VIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434
Query: 64 FI 65
FI
Sbjct: 435 FI 436
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
++D T L + GELC++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 373 VVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHF 432
Query: 64 FI 65
FI
Sbjct: 433 FI 434
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
++D T L + GELC++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 373 VVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHF 432
Query: 64 FI 65
FI
Sbjct: 433 FI 434
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHT 51
I+DP T LP + GE+C++GD + GY N EAT +D +GWLHT
Sbjct: 368 IVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
++D T L + GELC++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 378 VVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHF 437
Query: 64 FI 65
FI
Sbjct: 438 FI 439
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
++D T L + GEL ++G + + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 378 VVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHF 437
Query: 64 FI 65
FI
Sbjct: 438 FI 439
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 5 IIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHT 51
I+DP T L + GE+C++G + GY N AT E +D DGWLHT
Sbjct: 415 IVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 13 QLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 61
++P+G+ G L +G F GY E ++ D+D + ++GDL R PDG
Sbjct: 381 EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDG 430
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 MSRTIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDL 54
+S + DP T +LP G G + +KG +VF GY E TK DDG+ TGDL
Sbjct: 329 VSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDL 383
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 14 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHF 64
LP G+ GE+ L+G VF GY N AT+ + GW HTGD+ DG F
Sbjct: 342 LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRFDADGYLF 392
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 16 DGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62
+G+ GEL + F+GY N+ EAT E L D GW T D+A P+GT
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPEATAEKLQD-GWYRTSDVAVWTPEGT 394
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 16 DGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62
+G+ GEL + F+GY N+ +AT E L D GW T D+A P+GT
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGT 394
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 16 DGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62
+G+ GEL + F+GY N+ +AT E L D GW T D+A P+GT
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGT 394
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 16 DGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62
+G+ GEL + F+GY N+ +AT E L D GW T D+A P+GT
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGT 394
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 16 DGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62
+G+ GEL + F+GY N+ +AT E L D GW T D+A P+GT
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGT 394
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 16 DGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62
+G+ GEL + F+GY N+ +AT E L D GW T D+A P+GT
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGT 394
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 10 TSVQLPDGKT-GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 61
T + DG++ GE+ ++G ++F Y N+ +AT +DG+ TGD+A R PDG
Sbjct: 343 TPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDG 396
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 15 PDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGW------LHTGDLAYRLPDGT 62
P G GELC+ G V GY N+ + TKE ++ + TGDLA LPDGT
Sbjct: 799 PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGT 853
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MSRTIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA 55
+S + DP T +LP G G + + G +VF GY E T DDG+ TGDL
Sbjct: 329 VSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MSRTIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA 55
+S + DP T +LP G G + + G +VF GY E T DDG+ TGDL
Sbjct: 329 VSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 MSRTIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDL 54
+S + DP T +LP G G + + G +VF GY E T DDG+ TGDL
Sbjct: 329 VSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDL 383
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 20 GELCLKGDVFLG-YRNKVEATKEMLDDDGWLHTGDLA 55
GE+ +K D+ L Y N+ EAT++ D+ GW TGD+
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIG 398
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 20 GELCLKGDVFLG-YRNKVEATKEMLDDDGWLHTGDLA 55
GE+ +K D+ L Y N+ EAT++ D+ GW TGD+
Sbjct: 349 GEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIG 384
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLD-----------DDGWLHTG 52
I+D T ++ PDG GE+ + GD V GY K + ++ + WL TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
Query: 53 DLAYRLPDGTHFI 65
D + + DG FI
Sbjct: 466 DSGF-VTDGKXFI 477
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 32.7 bits (73), Expect = 0.051, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLD-----------DDGWLHTG 52
I+D T ++ PDG GE+ + GD V GY K + ++ + WL TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
Query: 53 DLAYRLPDGTHFI 65
D + + DG FI
Sbjct: 466 DSGF-VTDGKMFI 477
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 16 DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLA 55
DGK GE+ LKG + GY EAT+ L DG+ TGD+A
Sbjct: 379 DGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIA 420
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 32.3 bits (72), Expect = 0.068, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 14 LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
+PDG+ G+L +KG + Y N E ++ + W+ +GD RLP+G +
Sbjct: 373 VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCY 422
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 5 IIDPVTSVQLPDGKTGEL 22
IIDPVT LPDG GEL
Sbjct: 276 IIDPVTGEVLPDGSQGEL 293
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 14 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 61
LP G+ G L +G F GY + D +G+ +GDL P+G
Sbjct: 377 LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEG 425
>pdb|3PSQ|A Chain A, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
Class B Sortase Involved In Pilus Biogenesis
pdb|3PSQ|B Chain B, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
Class B Sortase Involved In Pilus Biogenesis
Length = 206
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 20 GELCLKGDVFLGYRNKV 36
GE L G VFL YRNKV
Sbjct: 67 GEYSLSGSVFLDYRNKV 83
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 20 GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 65
G +C+ G + +++ + GWL TGDL Y L DG ++
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLYV 455
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 17 GKTGELCLKG-DVFLGYRNKVEATKEML---------DDDGWLHTGDLAYRLPDG 61
G+TGEL L G + GY + E T E + + TGDL LPDG
Sbjct: 375 GETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDG 429
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 5 IIDPVTSVQLPDGKTGEL 22
IIDP T LPDG+ GEL
Sbjct: 274 IIDPETGEVLPDGELGEL 291
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 IIDPVTSVQLPDGKTGELCL 24
IIDP T +P+G+ GEL L
Sbjct: 269 IIDPETGEPVPEGEIGELVL 288
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 17 GKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 61
G+TG L +G + GY E +DG+ TGD+ DG
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDG 421
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 17 GKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 61
G+TG L +G + GY E +DG+ TGD+ DG
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDG 421
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 5 IIDPVTSVQLPDGKTGELCL 24
IIDP T LPDG+ GEL
Sbjct: 274 IIDPETGEVLPDGELGELVF 293
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 28 VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66
+F+ Y E T+E D G+ HTGD+A+ DG ++W
Sbjct: 434 LFVHYGKDPERTEETWHD-GYYHTGDMAWMDEDG--YLW 469
>pdb|3FTO|A Chain A, Crystal Structure Of Oppa In A Open Conformation
Length = 590
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 31 GY-RNKVEATKEMLDDDGWLHTGDLAYRLPDG 61
GY + ++ ++LD+DGW YR DG
Sbjct: 375 GYEKQDLDKANKLLDEDGWKLNKSTGYREKDG 406
>pdb|3DRF|A Chain A, Lactococcal Oppa Complexed With An Endogenous Peptide In
The Closed Conformation
pdb|3DRG|A Chain A, Lactococcal Oppa Complexed With Bradykinin In The Closed
Conformation
pdb|3DRH|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
Leu- Enkephalin In An Open Conformation
pdb|3DRI|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
An Octamer Peptide In An Open Conformation
pdb|3DRJ|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
Pth-Related Peptide In An Open Conformation
pdb|3DRK|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
Neuropeptide S In An Open Conformation
pdb|3RYA|A Chain A, Lactococcal Oppa Complexed With Slsqlssqs
pdb|3RYB|A Chain A, Lactococcal Oppa Complexed With Slsqslsqs
Length = 590
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 31 GY-RNKVEATKEMLDDDGWLHTGDLAYRLPDG 61
GY + ++ ++LD+DGW YR DG
Sbjct: 375 GYEKQDLDKANKLLDEDGWKLNKSTGYREKDG 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,330,162
Number of Sequences: 62578
Number of extensions: 82743
Number of successful extensions: 178
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 43
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)