Query psy4969
Match_columns 66
No_of_seqs 223 out of 1875
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:28:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176|consensus 99.9 2E-22 4.3E-27 127.5 6.3 63 3-66 364-427 (537)
2 PLN02614 long-chain acyl-CoA s 99.8 7.3E-20 1.6E-24 117.7 5.9 65 1-66 448-515 (666)
3 PF00501 AMP-binding: AMP-bind 99.8 1.2E-19 2.6E-24 110.1 5.4 66 1-66 341-407 (417)
4 COG0318 CaiC Acyl-CoA syntheta 99.8 1.8E-19 4E-24 113.5 6.3 65 1-66 355-420 (534)
5 PLN02574 4-coumarate--CoA liga 99.8 6.7E-19 1.5E-23 110.8 6.5 66 1-66 383-449 (560)
6 PTZ00342 acyl-CoA synthetase; 99.8 1.3E-18 2.8E-23 113.4 6.6 65 2-66 524-589 (746)
7 PTZ00216 acyl-CoA synthetase; 99.7 2.9E-18 6.3E-23 110.7 5.8 66 1-66 488-555 (700)
8 PRK07769 long-chain-fatty-acid 99.7 3.1E-18 6.8E-23 109.1 5.8 64 2-66 401-482 (631)
9 PRK06164 acyl-CoA synthetase; 99.7 5.6E-18 1.2E-22 105.8 6.8 65 2-66 360-425 (540)
10 COG1021 EntE Peptide arylation 99.7 4.2E-18 9E-23 105.1 5.9 63 2-65 369-432 (542)
11 KOG1256|consensus 99.7 2.5E-18 5.4E-23 110.7 5.1 65 1-65 480-545 (691)
12 COG1022 FAA1 Long-chain acyl-C 99.7 3E-18 6.6E-23 109.9 4.9 49 18-66 419-468 (613)
13 PLN02861 long-chain-fatty-acid 99.7 5.3E-18 1.2E-22 108.9 5.9 64 2-66 446-512 (660)
14 PRK06334 long chain fatty acid 99.7 1.6E-17 3.5E-22 104.5 7.4 66 1-66 362-429 (539)
15 PRK08633 2-acyl-glycerophospho 99.7 1.1E-17 2.3E-22 111.1 6.8 65 1-66 969-1038(1146)
16 PLN02736 long-chain acyl-CoA s 99.7 8.4E-18 1.8E-22 107.6 6.0 66 1-66 437-506 (651)
17 PRK05852 acyl-CoA synthetase; 99.7 1.4E-17 3.1E-22 104.1 6.2 64 1-66 363-427 (534)
18 PRK12476 putative fatty-acid-- 99.7 1.2E-17 2.6E-22 106.2 5.9 64 2-66 412-494 (612)
19 PRK05677 long-chain-fatty-acid 99.7 2.1E-17 4.5E-22 104.1 6.8 65 1-66 387-452 (562)
20 PRK10946 entE enterobactin syn 99.7 2.1E-17 4.5E-22 103.6 6.7 64 2-66 364-428 (536)
21 PLN02387 long-chain-fatty-acid 99.7 1.6E-17 3.5E-22 107.3 6.2 66 1-66 481-554 (696)
22 PRK12492 long-chain-fatty-acid 99.7 3.7E-17 8E-22 102.9 7.3 65 1-66 395-460 (562)
23 PTZ00237 acetyl-CoA synthetase 99.7 2.5E-17 5.5E-22 105.7 6.6 65 1-66 442-511 (647)
24 PRK09274 peptide synthase; Pro 99.7 5.9E-17 1.3E-21 101.6 7.1 66 1-66 361-439 (552)
25 KOG1177|consensus 99.7 2E-17 4.2E-22 103.6 4.8 64 2-66 416-480 (596)
26 PRK05850 acyl-CoA synthetase; 99.7 4.9E-17 1.1E-21 102.5 6.4 64 2-66 380-455 (578)
27 PLN02246 4-coumarate--CoA liga 99.7 6.9E-17 1.5E-21 101.1 7.0 66 1-66 365-431 (537)
28 TIGR02275 DHB_AMP_lig 2,3-dihy 99.7 6.6E-17 1.4E-21 101.0 6.7 64 2-66 363-427 (527)
29 PRK09088 acyl-CoA synthetase; 99.7 7.7E-17 1.7E-21 99.7 6.9 65 1-66 315-380 (488)
30 PLN02330 4-coumarate--CoA liga 99.7 6.8E-17 1.5E-21 101.4 6.6 65 2-66 371-436 (546)
31 PRK07638 acyl-CoA synthetase; 99.7 9E-17 2E-21 99.5 6.7 64 1-66 316-380 (487)
32 PRK06178 acyl-CoA synthetase; 99.7 1.1E-16 2.5E-21 100.6 7.0 65 1-66 396-461 (567)
33 PRK07059 Long-chain-fatty-acid 99.7 1.1E-16 2.5E-21 100.5 6.8 64 2-66 390-454 (557)
34 PLN02430 long-chain-fatty-acid 99.7 8E-17 1.7E-21 103.7 6.1 64 2-66 446-512 (660)
35 PRK08008 caiC putative crotono 99.7 1.6E-16 3.5E-21 98.8 6.5 65 1-66 349-417 (517)
36 TIGR03443 alpha_am_amid L-amin 99.7 1.7E-16 3.6E-21 107.6 6.8 65 2-66 603-697 (1389)
37 PRK06839 acyl-CoA synthetase; 99.7 2.1E-16 4.5E-21 97.7 6.6 63 2-66 327-390 (496)
38 PRK07514 malonyl-CoA synthase; 99.7 2.6E-16 5.7E-21 97.4 7.1 66 1-66 330-396 (504)
39 PLN02654 acetate-CoA ligase 99.7 2.1E-16 4.6E-21 101.7 6.4 65 1-66 463-532 (666)
40 PRK08315 AMP-binding domain pr 99.7 2.7E-16 5.9E-21 98.5 6.7 66 1-66 380-446 (559)
41 PRK00174 acetyl-CoA synthetase 99.7 3.2E-16 7E-21 100.0 6.9 65 1-66 433-502 (637)
42 PRK06145 acyl-CoA synthetase; 99.7 2.9E-16 6.2E-21 97.3 6.2 64 1-66 328-392 (497)
43 PRK05691 peptide synthase; Val 99.7 2.3E-16 5E-21 114.2 6.6 65 1-66 379-447 (4334)
44 TIGR02188 Ac_CoA_lig_AcsA acet 99.7 3.5E-16 7.7E-21 99.6 6.7 65 1-66 424-494 (625)
45 PRK06060 acyl-CoA synthetase; 99.7 3.3E-16 7.1E-21 101.0 6.4 62 1-66 322-384 (705)
46 PRK13390 acyl-CoA synthetase; 99.7 4.8E-16 1E-20 96.6 6.9 63 3-66 333-398 (501)
47 PRK07470 acyl-CoA synthetase; 99.7 4.1E-16 8.8E-21 97.3 6.5 63 2-66 350-413 (528)
48 PRK08751 putative long-chain f 99.6 4.7E-16 1E-20 97.7 6.6 64 2-66 392-456 (560)
49 PRK04319 acetyl-CoA synthetase 99.6 3.5E-16 7.7E-21 98.7 6.0 64 1-66 385-451 (570)
50 PRK07787 acyl-CoA synthetase; 99.6 7.2E-16 1.6E-20 95.4 7.1 65 1-66 302-369 (471)
51 PRK13295 cyclohexanecarboxylat 99.6 6.3E-16 1.4E-20 97.1 6.8 63 1-66 375-438 (547)
52 PLN02860 o-succinylbenzoate-Co 99.6 6.3E-16 1.4E-20 97.5 6.7 51 16-66 382-433 (563)
53 PRK06087 short chain acyl-CoA 99.6 6.6E-16 1.4E-20 96.8 6.3 64 2-66 365-429 (547)
54 PLN03102 acyl-activating enzym 99.6 5.9E-16 1.3E-20 98.1 6.0 63 3-66 374-439 (579)
55 PRK06155 crotonobetaine/carnit 99.6 1E-15 2.2E-20 96.4 6.5 64 1-66 352-419 (542)
56 PRK05857 acyl-CoA synthetase; 99.6 8.4E-16 1.8E-20 96.6 6.1 64 1-66 351-421 (540)
57 PRK12467 peptide synthase; Pro 99.6 5E-16 1.1E-20 112.2 5.2 65 1-66 3418-3490(3956)
58 TIGR02316 propion_prpE propion 99.6 1.8E-15 3.9E-20 96.6 7.2 66 1-66 419-491 (628)
59 PRK10252 entF enterobactin syn 99.6 1.4E-15 3E-20 102.4 6.8 64 2-66 786-856 (1296)
60 PRK12583 acyl-CoA synthetase; 99.6 1.8E-15 3.9E-20 94.8 6.9 64 2-66 383-447 (558)
61 PRK12316 peptide synthase; Pro 99.6 1.1E-15 2.5E-20 111.7 6.5 64 2-66 2329-2400(5163)
62 PRK08314 long-chain-fatty-acid 99.6 2.4E-15 5.2E-20 94.1 7.1 65 2-66 367-435 (546)
63 TIGR03208 cyc_hxne_CoA_lg cycl 99.6 2.2E-15 4.7E-20 94.5 6.7 63 1-66 373-436 (538)
64 TIGR01733 AA-adenyl-dom amino 99.6 2.8E-15 6E-20 90.7 6.9 65 1-66 301-374 (408)
65 PLN02479 acetate-CoA ligase 99.6 1.4E-15 3.1E-20 96.0 5.8 63 3-66 384-449 (567)
66 PRK07529 AMP-binding domain pr 99.6 2.2E-15 4.7E-20 96.5 6.6 63 2-66 396-464 (632)
67 COG0365 Acs Acyl-coenzyme A sy 99.6 1.5E-15 3.2E-20 96.4 5.8 63 1-66 350-415 (528)
68 PRK05851 long-chain-fatty-acid 99.6 2.3E-15 4.9E-20 94.4 6.5 60 1-66 354-414 (525)
69 PRK07788 acyl-CoA synthetase; 99.6 3E-15 6.5E-20 94.0 6.9 61 1-66 385-446 (549)
70 PRK08316 acyl-CoA synthetase; 99.6 2E-15 4.4E-20 93.6 6.1 63 2-66 351-414 (523)
71 PRK12316 peptide synthase; Pro 99.6 2E-15 4.3E-20 110.5 6.7 65 1-66 834-905 (5163)
72 PRK07656 long-chain-fatty-acid 99.6 2.8E-15 6E-20 92.9 6.4 65 1-66 346-411 (513)
73 PRK08276 long-chain-fatty-acid 99.6 4.2E-15 9.2E-20 92.3 6.9 64 2-66 324-388 (502)
74 PRK06188 acyl-CoA synthetase; 99.6 3.3E-15 7.1E-20 93.2 6.4 63 2-66 349-412 (524)
75 PRK05605 long-chain-fatty-acid 99.6 4.2E-15 9.1E-20 93.7 6.7 64 2-66 399-464 (573)
76 PLN03051 acyl-activating enzym 99.6 4.8E-15 1E-19 92.6 6.8 64 1-66 300-376 (499)
77 PRK06710 long-chain-fatty-acid 99.6 4E-15 8.7E-20 93.6 6.5 64 2-66 386-450 (563)
78 PRK07786 long-chain-fatty-acid 99.6 3.6E-15 7.8E-20 93.6 5.7 63 2-66 355-418 (542)
79 PRK12582 acyl-CoA synthetase; 99.6 2.9E-15 6.2E-20 95.7 5.1 53 14-66 418-475 (624)
80 PRK08974 long-chain-fatty-acid 99.6 6.3E-15 1.4E-19 92.7 6.4 63 2-66 388-451 (560)
81 PRK12467 peptide synthase; Pro 99.6 5.5E-15 1.2E-19 107.0 6.8 65 1-66 837-909 (3956)
82 TIGR01734 D-ala-DACP-lig D-ala 99.6 7.5E-15 1.6E-19 91.0 6.6 64 1-66 325-392 (502)
83 PRK08162 acyl-CoA synthetase; 99.6 6.2E-15 1.4E-19 92.3 6.0 63 3-66 370-435 (545)
84 TIGR02262 benz_CoA_lig benzoat 99.6 9.5E-15 2.1E-19 90.9 6.7 63 2-66 340-403 (508)
85 PRK03640 O-succinylbenzoic aci 99.6 7.9E-15 1.7E-19 90.5 6.2 62 2-66 317-379 (483)
86 PRK05691 peptide synthase; Val 99.6 6.8E-15 1.5E-19 106.9 6.6 64 2-66 4050-4121(4334)
87 PRK07867 acyl-CoA synthetase; 99.6 1E-14 2.2E-19 91.7 6.5 63 3-66 324-400 (529)
88 PRK10524 prpE propionyl-CoA sy 99.6 1.1E-14 2.4E-19 92.8 6.7 66 1-66 420-492 (629)
89 PRK09192 acyl-CoA synthetase; 99.6 1E-14 2.2E-19 92.4 6.4 62 2-66 395-457 (579)
90 PRK13382 acyl-CoA synthetase; 99.6 1.3E-14 2.9E-19 91.2 6.7 61 1-66 374-435 (537)
91 TIGR01217 ac_ac_CoA_syn acetoa 99.6 1.1E-14 2.5E-19 93.6 6.4 64 1-66 448-518 (652)
92 PRK08180 feruloyl-CoA synthase 99.6 9.3E-15 2E-19 93.2 5.9 51 16-66 408-463 (614)
93 KOG1180|consensus 99.5 8.9E-15 1.9E-19 93.0 4.9 65 2-66 464-534 (678)
94 PRK13391 acyl-CoA synthetase; 99.5 3.1E-14 6.8E-19 88.7 7.0 63 3-66 338-401 (511)
95 TIGR03205 pimA dicarboxylate-- 99.5 1.8E-14 3.9E-19 90.4 5.9 59 6-66 381-440 (541)
96 PRK03584 acetoacetyl-CoA synth 99.5 2.8E-14 6.1E-19 91.5 6.7 64 1-66 447-517 (655)
97 PRK13388 acyl-CoA synthetase; 99.5 1.9E-14 4.1E-19 90.6 5.8 60 5-66 337-399 (540)
98 PRK07768 long-chain-fatty-acid 99.5 4.1E-14 8.8E-19 88.8 6.9 63 2-66 370-433 (545)
99 PRK12406 long-chain-fatty-acid 99.5 5.4E-14 1.2E-18 87.6 7.0 63 2-66 334-398 (509)
100 PRK04813 D-alanine--poly(phosp 99.5 7.1E-14 1.5E-18 86.5 7.0 63 2-66 328-394 (503)
101 PRK06187 long-chain-fatty-acid 99.5 5.5E-14 1.2E-18 87.0 6.3 63 2-66 349-414 (521)
102 PRK13383 acyl-CoA synthetase; 99.5 8.3E-14 1.8E-18 87.0 6.7 61 1-66 354-415 (516)
103 TIGR03098 ligase_PEP_1 acyl-Co 99.5 1.1E-13 2.3E-18 86.0 6.3 65 1-66 337-413 (515)
104 PRK05620 long-chain-fatty-acid 99.5 3.2E-13 6.9E-18 85.5 6.8 63 2-66 368-449 (576)
105 PRK07008 long-chain-fatty-acid 99.4 2.7E-13 5.8E-18 85.3 6.1 60 2-66 366-428 (539)
106 PRK08043 bifunctional acyl-[ac 99.4 5.8E-13 1.2E-17 86.4 6.6 60 2-66 541-610 (718)
107 PRK06018 putative acyl-CoA syn 99.4 2.2E-12 4.7E-17 81.2 6.7 61 2-66 366-429 (542)
108 PRK06814 acylglycerophosphoeth 99.3 3.9E-12 8.5E-17 85.4 6.8 50 17-66 979-1029(1140)
109 KOG1175|consensus 99.3 5.8E-12 1.3E-16 81.4 6.4 65 1-66 423-494 (626)
110 PRK07798 acyl-CoA synthetase; 99.3 1.3E-11 2.8E-16 76.8 7.1 63 2-66 359-427 (533)
111 PRK08279 long-chain-acyl-CoA s 99.3 1.5E-11 3.2E-16 78.3 5.9 53 13-66 397-458 (600)
112 PRK07445 O-succinylbenzoic aci 99.2 2.2E-11 4.7E-16 75.8 6.0 44 17-66 299-343 (452)
113 TIGR01923 menE O-succinylbenzo 99.2 3.3E-11 7.1E-16 73.7 6.3 48 18-66 291-339 (436)
114 PRK09029 O-succinylbenzoic aci 99.2 4.8E-11 1E-15 73.7 4.8 45 20-66 305-350 (458)
115 PRK07868 acyl-CoA synthetase; 99.2 7.8E-11 1.7E-15 79.2 6.1 55 7-66 796-855 (994)
116 PLN03052 acetate--CoA ligase; 99.1 2.4E-10 5.2E-15 74.9 7.3 64 1-66 534-608 (728)
117 COG1020 EntF Non-ribosomal pep 99.0 5.3E-10 1.1E-14 71.7 5.5 64 2-66 551-615 (642)
118 PRK07824 O-succinylbenzoic aci 99.0 8.1E-10 1.8E-14 66.6 4.2 45 19-66 207-252 (358)
119 KOG1179|consensus 98.8 1E-08 2.2E-13 66.0 5.7 54 13-66 442-507 (649)
120 TIGR02155 PA_CoA_ligase phenyl 98.7 3.3E-08 7.1E-13 61.1 5.2 47 2-60 256-302 (422)
121 PRK09188 serine/threonine prot 98.3 7.3E-07 1.6E-11 55.2 3.0 22 45-66 207-229 (365)
122 PRK08308 acyl-CoA synthetase; 98.0 1.3E-05 2.8E-10 49.3 4.5 21 46-66 290-310 (414)
123 KOG3628|consensus 98.0 1.2E-05 2.7E-10 55.4 4.7 63 2-65 513-588 (1363)
124 KOG3628|consensus 97.8 4.8E-05 1E-09 52.7 4.7 58 1-58 1162-1230(1363)
125 TIGR03335 F390_ftsA coenzyme F 97.6 0.0002 4.4E-09 45.1 5.3 25 2-26 261-285 (445)
126 COG1541 PaaK Coenzyme F390 syn 96.4 0.0093 2E-07 38.2 4.6 46 2-59 269-314 (438)
127 TIGR02372 4_coum_CoA_lig 4-cou 95.2 0.018 3.9E-07 36.0 2.4 19 48-66 276-294 (386)
128 PF04443 LuxE: Acyl-protein sy 93.6 0.54 1.2E-05 29.6 6.3 45 3-60 287-331 (365)
129 PTZ00297 pantothenate kinase; 87.9 1.6 3.4E-05 32.3 4.8 51 1-62 809-860 (1452)
130 PF07494 Reg_prop: Two compone 80.5 1.8 3.9E-05 16.3 1.6 10 56-65 11-20 (24)
131 cd03458 Catechol_intradiol_dio 69.3 21 0.00045 21.7 4.7 12 3-15 109-120 (256)
132 KOG1178|consensus 67.7 11 0.00025 27.2 3.8 20 46-65 453-472 (1032)
133 cd03460 1,2-CTD Catechol 1,2 d 67.7 26 0.00057 21.6 5.1 11 4-15 130-140 (282)
134 TIGR02439 catechol_proteo cate 65.5 28 0.00061 21.5 4.8 11 4-15 134-144 (285)
135 cd03461 1,2-HQD Hydroxyquinol 64.8 28 0.00061 21.4 4.7 13 3-16 125-137 (277)
136 COG3485 PcaH Protocatechuate 3 62.0 29 0.00063 20.8 4.3 29 2-34 76-104 (226)
137 PF15121 TMEM71: TMEM71 protei 61.4 11 0.00023 20.9 2.3 20 46-65 67-87 (149)
138 TIGR02465 chlorocat_1_2 chloro 60.1 36 0.00079 20.6 4.8 11 4-15 104-114 (246)
139 cd03462 1,2-CCD chlorocatechol 56.0 44 0.00095 20.3 4.8 10 56-65 147-156 (247)
140 PTZ00380 microtubule-associate 55.0 6.9 0.00015 21.1 0.9 10 56-65 93-102 (121)
141 PF13953 PapC_C: PapC C-termin 54.9 18 0.00038 17.1 2.3 13 4-17 2-14 (68)
142 PF07610 DUF1573: Protein of u 52.2 19 0.00041 15.6 2.0 15 11-25 30-44 (45)
143 PF02991 Atg8: Autophagy prote 51.8 9.5 0.00021 19.9 1.1 10 56-65 86-95 (104)
144 PF01043 SecA_PP_bind: SecA pr 50.2 15 0.00033 19.4 1.7 14 2-15 87-100 (113)
145 PF05452 Clavanin: Clavanin; 50.2 9.1 0.0002 18.7 0.8 7 47-53 73-79 (80)
146 KOG3050|consensus 49.5 4.8 0.0001 24.6 -0.3 20 35-55 79-102 (299)
147 PF09956 DUF2190: Uncharacteri 48.2 39 0.00084 17.7 3.1 36 14-60 38-73 (106)
148 COG4014 Uncharacterized protei 47.1 26 0.00056 18.0 2.2 18 48-65 17-39 (97)
149 TIGR02998 RraA_entero regulato 46.5 54 0.0012 18.5 3.7 18 48-65 137-154 (161)
150 PF06970 RepA_N: Replication i 44.7 12 0.00027 18.4 0.8 10 56-65 42-51 (76)
151 PF10102 DUF2341: Domain of un 44.0 44 0.00096 16.8 3.2 37 2-39 5-56 (89)
152 PF06135 DUF965: Bacterial pro 42.8 11 0.00025 18.8 0.5 15 46-60 40-54 (79)
153 PF10411 DsbC_N: Disulfide bon 41.8 26 0.00057 16.0 1.7 15 51-65 32-46 (57)
154 PF06739 SBBP: Beta-propeller 41.0 25 0.00055 14.7 1.4 9 57-65 20-28 (38)
155 PF04126 Cyclophil_like: Cyclo 40.3 35 0.00077 18.1 2.2 17 49-65 60-76 (120)
156 PF02839 CBM_5_12: Carbohydrat 38.3 36 0.00078 14.1 2.1 18 45-64 6-23 (41)
157 PF12433 PV_NSP1: Parvovirus n 38.2 22 0.00047 17.7 1.1 14 45-58 38-51 (80)
158 PRK06201 hypothetical protein; 37.9 87 0.0019 18.5 4.1 18 48-65 159-176 (221)
159 KOG4826|consensus 37.2 20 0.00043 21.4 1.0 44 19-63 66-114 (229)
160 TIGR02438 catachol_actin catec 36.6 1.1E+02 0.0023 19.1 4.5 8 58-65 182-189 (281)
161 smart00634 BID_1 Bacterial Ig- 34.7 34 0.00073 16.9 1.5 14 2-16 23-36 (92)
162 KOG1654|consensus 34.6 23 0.0005 19.0 0.9 10 57-66 99-108 (116)
163 PRK01322 6-carboxyhexanoate--C 34.0 99 0.0021 18.8 3.6 22 15-36 171-194 (242)
164 PRK03955 hypothetical protein; 33.9 49 0.0011 18.1 2.1 18 48-65 110-128 (131)
165 cd03463 3,4-PCD_alpha Protocat 31.5 1.1E+02 0.0024 17.7 4.7 9 57-65 89-97 (185)
166 PF00775 Dioxygenase_C: Dioxyg 31.3 1.1E+02 0.0024 17.6 3.6 22 2-25 33-54 (183)
167 cd08047 TAF7 TATA Binding Prot 31.2 43 0.00093 18.8 1.7 40 18-57 39-81 (162)
168 COG1786 Swiveling domain assoc 29.6 60 0.0013 17.8 2.0 17 49-65 113-129 (131)
169 PF14903 WG_beta_rep: WG conta 29.4 47 0.001 12.8 1.7 10 55-64 2-11 (35)
170 PF06977 SdiA-regulated: SdiA- 29.0 35 0.00077 20.5 1.2 11 56-66 228-238 (248)
171 PRK10559 p-hydroxybenzoic acid 28.8 1.2E+02 0.0026 18.6 3.5 23 11-33 272-295 (310)
172 KOG1556|consensus 28.6 24 0.00052 21.7 0.4 11 46-56 93-103 (309)
173 cd01611 GABARAP Ubiquitin doma 28.0 40 0.00086 17.8 1.2 10 56-65 94-103 (112)
174 COG2046 MET3 ATP sulfurylase ( 27.5 38 0.00083 22.0 1.2 20 29-48 164-183 (397)
175 PF04658 TAFII55_N: TAFII55 pr 27.0 69 0.0015 18.1 2.1 40 18-57 41-83 (162)
176 cd06919 Asp_decarbox Aspartate 27.0 69 0.0015 17.1 1.9 26 2-27 42-73 (111)
177 PF00379 Chitin_bind_4: Insect 26.3 73 0.0016 14.0 1.8 18 49-66 26-43 (52)
178 PF11142 DUF2917: Protein of u 26.0 85 0.0019 14.7 2.7 21 45-65 36-56 (63)
179 TIGR03009 plancto_dom_2 Planct 26.0 90 0.0019 18.5 2.5 25 4-30 25-50 (210)
180 PRK03760 hypothetical protein; 25.4 71 0.0015 17.0 1.8 15 50-64 59-73 (117)
181 PRK09372 ribonuclease activity 25.3 1E+02 0.0022 17.3 2.6 18 48-65 137-154 (159)
182 TIGR00223 panD L-aspartate-alp 25.3 75 0.0016 17.4 1.9 26 2-27 43-74 (126)
183 PRK01546 hypothetical protein; 24.7 43 0.00093 16.8 0.8 14 2-16 51-64 (79)
184 PF02643 DUF192: Uncharacteriz 24.4 76 0.0016 16.4 1.8 16 49-64 47-62 (108)
185 COG5475 Uncharacterized small 24.3 78 0.0017 14.9 1.6 13 49-61 5-17 (60)
186 PF09926 DUF2158: Uncharacteri 24.1 59 0.0013 14.9 1.2 11 49-59 1-11 (53)
187 PF08460 SH3_5: Bacterial SH3 24.1 83 0.0018 14.9 1.8 18 48-65 30-51 (65)
188 PRK05473 hypothetical protein; 23.8 28 0.00061 17.7 0.1 14 47-60 44-57 (86)
189 PF01436 NHL: NHL repeat; Int 23.7 62 0.0013 12.3 1.4 7 59-65 11-17 (28)
190 PF02261 Asp_decarbox: Asparta 23.6 1.3E+02 0.0028 16.2 2.6 27 2-28 43-75 (116)
191 PRK02539 hypothetical protein; 23.4 52 0.0011 16.7 1.0 14 2-16 50-63 (85)
192 PF11253 DUF3052: Protein of u 22.1 61 0.0013 17.7 1.2 9 57-65 71-79 (127)
193 KOG4195|consensus 21.8 73 0.0016 19.4 1.5 29 29-62 201-229 (275)
194 COG1430 Uncharacterized conser 21.7 91 0.002 17.0 1.8 15 50-64 62-76 (126)
195 PRK01631 hypothetical protein; 20.7 62 0.0013 16.1 1.0 13 3-16 50-62 (76)
196 PRK09262 hypothetical protein; 20.6 1.2E+02 0.0025 18.1 2.2 18 48-65 157-174 (225)
197 PRK12487 ribonuclease activity 20.5 1.4E+02 0.0029 17.0 2.4 18 48-65 137-154 (163)
198 PF11429 Colicin_D: Colicin D; 20.5 1.1E+02 0.0024 15.7 1.9 15 50-64 59-73 (92)
199 TIGR02798 ligK_PcmE 4-carboxy- 20.4 1.2E+02 0.0027 17.9 2.3 18 48-65 155-172 (222)
No 1
>KOG1176|consensus
Probab=99.87 E-value=2e-22 Score=127.55 Aligned_cols=63 Identities=48% Similarity=0.826 Sum_probs=57.3
Q ss_pred EEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++|.+ ++|+.+++++.||||++|++ +.||++||++|++.|..+|||+|||+|++|+||+|+|+
T Consensus 364 ~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~Iv 427 (537)
T KOG1176|consen 364 VKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIV 427 (537)
T ss_pred EEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEe
Confidence 44555 45999999999999999999 99999999999999966699999999999999999985
No 2
>PLN02614 long-chain acyl-CoA synthetase
Probab=99.80 E-value=7.3e-20 Score=117.67 Aligned_cols=65 Identities=37% Similarity=0.685 Sum_probs=57.4
Q ss_pred CEEEEEc-CC-CCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIID-PV-TSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d-~~-~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+| ++ .++++++|+.|||+|+||+ +.|||++++.|++.| .+|||+|||+|++|+||+|+|+
T Consensus 448 ~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~ 515 (666)
T PLN02614 448 VDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKII 515 (666)
T ss_pred eEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCCEEEE
Confidence 3678887 33 2478899999999999999 999999999999988 6899999999999999999984
No 3
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=99.79 E-value=1.2e-19 Score=110.06 Aligned_cols=66 Identities=42% Similarity=0.712 Sum_probs=60.1
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+++||. +.||+++++.+.+.|..++||+|||+|++|+||+|+++
T Consensus 341 ~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~ 407 (417)
T PF00501_consen 341 VEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYIL 407 (417)
T ss_dssp EEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEE
T ss_pred cccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEE
Confidence 3689999888999999999999999999 99999999999888855579999999999999999974
No 4
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=1.8e-19 Score=113.49 Aligned_cols=65 Identities=45% Similarity=0.783 Sum_probs=57.0
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++++.++| |++|||+++||+ +.|||++|+.+.+.|..++||+|||+|++|++|+|+|.
T Consensus 355 ~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~ 420 (534)
T COG0318 355 VEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIV 420 (534)
T ss_pred cEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEE
Confidence 478999988444555 999999999999 99999999999888844599999999999999999984
No 5
>PLN02574 4-coumarate--CoA ligase-like
Probab=99.78 E-value=6.7e-19 Score=110.82 Aligned_cols=66 Identities=42% Similarity=0.712 Sum_probs=60.0
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+++|+. +.|||++++.+.+.|..++||+|||++++|++|+++|+
T Consensus 383 ~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~ 449 (560)
T PLN02574 383 MQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIV 449 (560)
T ss_pred cEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEE
Confidence 4678999666999999999999999999 99999999999888867899999999999999999874
No 6
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=99.76 E-value=1.3e-18 Score=113.45 Aligned_cols=65 Identities=28% Similarity=0.344 Sum_probs=55.2
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|.++....+....|||+++||. |.|||++|+.|+++|..+|||+|||+|++|+||+|+|+
T Consensus 524 e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~ 589 (746)
T PTZ00342 524 KYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFL 589 (746)
T ss_pred EEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEE
Confidence 577877443444444567999999999 99999999999999977999999999999999999984
No 7
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=99.74 E-value=2.9e-18 Score=110.70 Aligned_cols=66 Identities=35% Similarity=0.605 Sum_probs=56.0
Q ss_pred CEEEEEcCCC-CeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVT-SVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~-g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++. ....+++..|||+|+||+ +.|||++++.|++.|..+|||+|||+|++|+||+|+|+
T Consensus 488 ~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~ 555 (700)
T PTZ00216 488 VEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRII 555 (700)
T ss_pred eEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEE
Confidence 3678888652 123455678999999999 99999999999999977899999999999999999984
No 8
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.74 E-value=3.1e-18 Score=109.06 Aligned_cols=64 Identities=38% Similarity=0.643 Sum_probs=55.6
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC-----------------CCeEecCceEEECCCCcE
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD-----------------DGWLHTGDLAYRLPDGTH 63 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~-----------------~~~~~TGD~~~~d~dG~l 63 (66)
.++|+|++++++++.|+.|||+++||+ +.|||++++.+++.|.. ++||+|||+|+++ +|+|
T Consensus 401 ~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l 479 (631)
T PRK07769 401 WAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGEL 479 (631)
T ss_pred EEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEE
Confidence 467888665899999999999999999 99999999998887731 4799999999995 9999
Q ss_pred EEC
Q psy4969 64 FIW 66 (66)
Q Consensus 64 ~~~ 66 (66)
+|+
T Consensus 480 ~i~ 482 (631)
T PRK07769 480 YIT 482 (631)
T ss_pred EEE
Confidence 984
No 9
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.74 E-value=5.6e-18 Score=105.85 Aligned_cols=65 Identities=35% Similarity=0.618 Sum_probs=59.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++++++++.|+.|||+++|++ +.||++++..+.+.|..++||+|||+|++|++|+++++
T Consensus 360 ~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~ 425 (540)
T PRK06164 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQ 425 (540)
T ss_pred EEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEE
Confidence 567888776899999999999999999 99999999999888877899999999999999998863
No 10
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=4.2e-18 Score=105.12 Aligned_cols=63 Identities=30% Similarity=0.532 Sum_probs=60.5
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEE
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~ 65 (66)
+++|+|.+ |+++++|++|+|..+||. +.||++.++.++++|+.+|+|+|||+.++|++|||.+
T Consensus 369 EvrvvD~d-g~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V 432 (542)
T COG1021 369 EVRVVDAD-GNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVV 432 (542)
T ss_pred eeEEecCC-CCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEE
Confidence 68999988 999999999999999999 9999999999999999999999999999999999976
No 11
>KOG1256|consensus
Probab=99.74 E-value=2.5e-18 Score=110.71 Aligned_cols=65 Identities=40% Similarity=0.721 Sum_probs=56.7
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEE
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~ 65 (66)
++++++|....+.-+.+..|||+|+|+. |.||+++|+.|+++++.+||++|||+|++|++|.|.|
T Consensus 480 ~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~I 545 (691)
T KOG1256|consen 480 NEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKI 545 (691)
T ss_pred ceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEE
Confidence 3577777543455566678999999999 9999999999999999999999999999999999987
No 12
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=99.74 E-value=3e-18 Score=109.88 Aligned_cols=49 Identities=39% Similarity=0.632 Sum_probs=46.6
Q ss_pred CceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 18 KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 18 ~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+.|||+||||. |.|||++|+.|+++|+.+|||+|||+|.+|++|+|+|.
T Consensus 419 d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~ 468 (613)
T COG1022 419 DDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVIT 468 (613)
T ss_pred cCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEe
Confidence 46999999999 99999999999999999999999999999999999874
No 13
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.73 E-value=5.3e-18 Score=108.94 Aligned_cols=64 Identities=36% Similarity=0.676 Sum_probs=53.6
Q ss_pred EEEEEcC-CCC-eeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDP-VTS-VQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~-~~g-~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|. +.| ..+++++.|||+++||. +.|||++++.|++.| .+|||+|||+|++|+||+|+|+
T Consensus 446 ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~ 512 (660)
T PLN02861 446 EARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKII 512 (660)
T ss_pred EEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEEE
Confidence 5677762 213 34455678999999999 999999999999998 6899999999999999999984
No 14
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=99.73 E-value=1.6e-17 Score=104.47 Aligned_cols=66 Identities=29% Similarity=0.442 Sum_probs=55.6
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhccc-CCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML-DDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~-~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+++|+. +.|||++++.+.... ..++||+|||+|++|++|+|+|+
T Consensus 362 ~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~ 429 (539)
T PRK06334 362 MDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLK 429 (539)
T ss_pred CEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEE
Confidence 4678898766889999999999999999 999999988654322 23679999999999999999874
No 15
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.73 E-value=1.1e-17 Score=111.10 Aligned_cols=65 Identities=35% Similarity=0.536 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCC----CeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD----GWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~----~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+++|+. +.|||++++.+++.+ .+ +||+|||++++|+||+++++
T Consensus 969 ~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~-~~~~~~~~~~TGD~~~~~~~g~l~~~ 1038 (1146)
T PRK08633 969 VAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVI-KDIDGIGWYVTGDKGHLDEDGFLTIT 1038 (1146)
T ss_pred CEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHh-hcCCCCCeEECCCEEEEcCCceEEEE
Confidence 3688999776899999999999999999 999999999888777 34 89999999999999999874
No 16
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.73 E-value=8.4e-18 Score=107.64 Aligned_cols=66 Identities=35% Similarity=0.668 Sum_probs=53.9
Q ss_pred CEEEEEcCCCCe---eCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSV---QLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~---~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|.+.+. ...+++.|||+++||. |.|||++++.+++.|..+|||+|||+|++|+||+|+|+
T Consensus 437 ~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~ 506 (651)
T PLN02736 437 CEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII 506 (651)
T ss_pred eEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEE
Confidence 367788743222 2233457999999999 99999999999988877899999999999999999984
No 17
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.72 E-value=1.4e-17 Score=104.13 Aligned_cols=64 Identities=33% Similarity=0.533 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+++|+. +.|||++++.+++.| .++||+|||++++|+||+++++
T Consensus 363 ~~~~i~d~~-g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~ 427 (534)
T PRK05852 363 AQIRIVGSD-GLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIR 427 (534)
T ss_pred CeEEEECCC-CCCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEE
Confidence 367889987 899999999999999999 999999999998888 6789999999999999999874
No 18
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.72 E-value=1.2e-17 Score=106.17 Aligned_cols=64 Identities=44% Similarity=0.728 Sum_probs=55.7
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC------------------CCCeEecCceEEECCCCc
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD------------------DDGWLHTGDLAYRLPDGT 62 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~------------------~~~~~~TGD~~~~d~dG~ 62 (66)
+++|+|+++++++++|+.|||+++|+. +.|||++++.+++.|. .++||+|||+|+++ ||+
T Consensus 412 ~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~ 490 (612)
T PRK12476 412 WAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGE 490 (612)
T ss_pred EEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCE
Confidence 578899766899999999999999999 9999999999887773 13599999999985 999
Q ss_pred EEEC
Q psy4969 63 HFIW 66 (66)
Q Consensus 63 l~~~ 66 (66)
|+|+
T Consensus 491 l~i~ 494 (612)
T PRK12476 491 LYIT 494 (612)
T ss_pred EEEE
Confidence 9984
No 19
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.72 E-value=2.1e-17 Score=104.09 Aligned_cols=65 Identities=46% Similarity=0.733 Sum_probs=59.5
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++|+. +.||+++++.+++.|..++||+|||++++|++|+++|.
T Consensus 387 ~~v~i~d~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~ 452 (562)
T PRK05677 387 TLCKVIDDD-GNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIV 452 (562)
T ss_pred CEEEEECCC-CCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEE
Confidence 367899987 899999999999999999 99999999999888866899999999999999999873
No 20
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.72 E-value=2.1e-17 Score=103.60 Aligned_cols=64 Identities=28% Similarity=0.469 Sum_probs=58.7
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ ++++++|+.|||+++|+. +.|||++++.+.+.|..++||+|||++++|++|+++++
T Consensus 364 ~v~i~d~~-~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~ 428 (536)
T PRK10946 364 EVWVADAD-GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVV 428 (536)
T ss_pred eEEEECCC-CCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEe
Confidence 57788876 899999999999999999 99999999999888877899999999999999999874
No 21
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.72 E-value=1.6e-17 Score=107.34 Aligned_cols=66 Identities=27% Similarity=0.434 Sum_probs=52.6
Q ss_pred CEEEEEc-CCCCeeC--CCCCceEEEEEcCC-CccccCCchhhhcccC--CCC--eEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIID-PVTSVQL--PDGKTGELCLKGDV-FLGYRNKVEATKEMLD--DDG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d-~~~g~~~--~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~--~~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+| ++.+..+ .++..|||+++||+ |.|||++++.|++.|. .+| ||+|||+|++|+||+|+|+
T Consensus 481 ~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~ 554 (696)
T PLN02387 481 CYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEII 554 (696)
T ss_pred eEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEE
Confidence 3678888 3422222 34457999999999 9999999999998883 345 9999999999999999874
No 22
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.71 E-value=3.7e-17 Score=102.95 Aligned_cols=65 Identities=45% Similarity=0.720 Sum_probs=59.1
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+++|+. +.|||++++.+.+.|..++||+|||++++|++|+++|+
T Consensus 395 ~~v~ivd~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~ 460 (562)
T PRK12492 395 TALKVIDDD-GNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIV 460 (562)
T ss_pred CEEEEECCC-CCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEe
Confidence 368899987 899999999999999999 99999999999888866789999999999999999874
No 23
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.71 E-value=2.5e-17 Score=105.67 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=57.1
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcC---C-CccccCCchhhhcccCC-CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEATKEMLDD-DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~---~-~~gY~~~~~~~~~~~~~-~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ |+++++|+.|||++++| + +.|||++++.+.+.|.. ++||+|||+|++|++|+|+|+
T Consensus 442 ~~~~i~d~~-g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~ 511 (647)
T PTZ00237 442 IKPSILSED-GKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIV 511 (647)
T ss_pred ceEEEECCC-CCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEE
Confidence 357899976 99999999999999986 6 89999999988877743 689999999999999999874
No 24
>PRK09274 peptide synthase; Provisional
Probab=99.70 E-value=5.9e-17 Score=101.59 Aligned_cols=66 Identities=30% Similarity=0.532 Sum_probs=55.3
Q ss_pred CEEEEEcCC--------CCeeCCCCCceEEEEEcCC-CccccCCchhhhccc--CCCC--eEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPV--------TSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML--DDDG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~--------~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~--~~~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+. ++++++.|+.|||+++|+. +.|||++++.+...+ ..++ ||+|||+|++|++|+|+|+
T Consensus 361 ~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~ 439 (552)
T PRK09274 361 VEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFC 439 (552)
T ss_pred ceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEE
Confidence 356788742 2678899999999999999 999999999887665 2355 9999999999999999874
No 25
>KOG1177|consensus
Probab=99.70 E-value=2e-17 Score=103.62 Aligned_cols=64 Identities=38% Similarity=0.597 Sum_probs=59.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+..|+|.+ |..++.+..|||++||++ |.+||++++.+.++...+.||.|||+|.+|++|+++||
T Consensus 416 Ea~iv~~~-g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iV 480 (596)
T KOG1177|consen 416 EAAIVDKD-GSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIV 480 (596)
T ss_pred ccccccCC-CCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEE
Confidence 56788866 999999999999999999 99999999999988878899999999999999999986
No 26
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.70 E-value=4.9e-17 Score=102.46 Aligned_cols=64 Identities=38% Similarity=0.700 Sum_probs=55.8
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC-----------CCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-----------DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~-----------~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|+++++++++|+.|||+++|+. +.|||++++.+++.|. .++||+|||+|+++ +|+|+|+
T Consensus 380 ~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~ 455 (578)
T PRK05850 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIV 455 (578)
T ss_pred EEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEE
Confidence 567888765788999999999999999 9999999999988773 24699999999998 8999874
No 27
>PLN02246 4-coumarate--CoA ligase
Probab=99.70 E-value=6.9e-17 Score=101.14 Aligned_cols=66 Identities=44% Similarity=0.812 Sum_probs=59.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+++|+. +.||+++++.+.+.+..++||+|||+++++++|+++++
T Consensus 365 ~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~ 431 (537)
T PLN02246 365 AELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIV 431 (537)
T ss_pred cEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEE
Confidence 3578888666899999999999999999 99999999998888867899999999999999999874
No 28
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.69 E-value=6.6e-17 Score=101.02 Aligned_cols=64 Identities=28% Similarity=0.472 Sum_probs=58.5
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ ++++++|+.|||+++|+. +.|||++++.+.+.+..++||+|||+++++++|+++++
T Consensus 363 ~v~i~d~~-g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~ 427 (527)
T TIGR02275 363 EVRVVDDH-GNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVV 427 (527)
T ss_pred eEEEECCC-CCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEE
Confidence 57788876 899999999999999999 99999999999888877899999999999999999874
No 29
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.69 E-value=7.7e-17 Score=99.70 Aligned_cols=65 Identities=34% Similarity=0.613 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++++. +.||+++++.+++.+..++||+|||++++|++|+++|+
T Consensus 315 ~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~ 380 (488)
T PRK09088 315 VQTRVVDDQ-GNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVV 380 (488)
T ss_pred cEEEEECCC-CCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEe
Confidence 357888876 889999999999999999 99999999988887766899999999999999999874
No 30
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.69 E-value=6.8e-17 Score=101.40 Aligned_cols=65 Identities=45% Similarity=0.825 Sum_probs=58.6
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|+++++++++|+.|||+++|+. +.||++++..+.+.+..++||+|||++++++||+++|+
T Consensus 371 ~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~ 436 (546)
T PLN02330 371 EVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIV 436 (546)
T ss_pred EEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEE
Confidence 578888666899999999999999999 99999999988877767899999999999999999874
No 31
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.69 E-value=9e-17 Score=99.48 Aligned_cols=64 Identities=23% Similarity=0.479 Sum_probs=57.2
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+.++|+|++ ++++++|+.|||+++++. +.|||++++.+.+.+ .++||+|||++++|++|+++++
T Consensus 316 ~~~~i~d~~-g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~ 380 (487)
T PRK07638 316 VQVRICNEA-GEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIV 380 (487)
T ss_pred cEEEEECCC-CCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEE
Confidence 367899977 999999999999999999 999999998776655 6889999999999999999874
No 32
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.69 E-value=1.1e-16 Score=100.65 Aligned_cols=65 Identities=40% Similarity=0.536 Sum_probs=58.1
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++.+++++.|+.|||+++|+. +.|||++++.+...+ .++||+|||+++++++|+++|+
T Consensus 396 ~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~ 461 (567)
T PRK06178 396 TEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYL 461 (567)
T ss_pred cEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEE
Confidence 3578898666899999999999999999 999999999888777 6789999999999999999874
No 33
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.68 E-value=1.1e-16 Score=100.50 Aligned_cols=64 Identities=31% Similarity=0.563 Sum_probs=58.5
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ ++++++|+.|||+++++. +.|||++++.+.+.+..++||+|||+++++++|+++++
T Consensus 390 ~v~i~d~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~ 454 (557)
T PRK07059 390 EVSIRDDD-GNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIV 454 (557)
T ss_pred EEEEECCC-CCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEe
Confidence 57889877 899999999999999999 99999999998887767899999999999999999874
No 34
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=99.68 E-value=8e-17 Score=103.68 Aligned_cols=64 Identities=34% Similarity=0.663 Sum_probs=52.8
Q ss_pred EEEEEcC-CCC-eeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDP-VTS-VQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~-~~g-~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|.|. +.+ .+++.+..|||+|+||. +.|||++++.+++.| .+|||+|||+|++|+||+|+|+
T Consensus 446 evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~ 512 (660)
T PLN02430 446 ELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKII 512 (660)
T ss_pred EEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEECCCCcEEEE
Confidence 4566552 212 44555668999999999 999999999999888 6899999999999999999874
No 35
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.67 E-value=1.6e-16 Score=98.85 Aligned_cols=65 Identities=38% Similarity=0.711 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEc---CC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKG---DV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~---~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++| +. +.|||++++.+++.|..++||+|||++++|++|+++++
T Consensus 349 ~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~ 417 (517)
T PRK08008 349 YEAEIRDDH-NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFV 417 (517)
T ss_pred cEEEEECCC-CCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEe
Confidence 367889976 8999999999999997 56 99999999999888877899999999999999999874
No 36
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.67 E-value=1.7e-16 Score=107.56 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=56.4
Q ss_pred EEEEEcCCC-CeeCCCCCceEEEEEcCC-CccccCCchhhhcccC----------------------------CCCeEec
Q psy4969 2 SRTIIDPVT-SVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD----------------------------DDGWLHT 51 (66)
Q Consensus 2 ~v~i~d~~~-g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~----------------------------~~~~~~T 51 (66)
+++|+|++. +++++.|++|||+|+||+ +.|||++++.++++|. .++||+|
T Consensus 603 ~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~T 682 (1389)
T TIGR03443 603 QLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRT 682 (1389)
T ss_pred EEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeec
Confidence 567888652 578999999999999999 9999999999988773 2479999
Q ss_pred CceEEECCCCcEEEC
Q psy4969 52 GDLAYRLPDGTHFIW 66 (66)
Q Consensus 52 GD~~~~d~dG~l~~~ 66 (66)
||+|++++||+|+|+
T Consensus 683 GDlg~~~~dG~l~~~ 697 (1389)
T TIGR03443 683 GDLGRYLPDGNVECC 697 (1389)
T ss_pred CCceeEcCCCCEEEe
Confidence 999999999999884
No 37
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.67 E-value=2.1e-16 Score=97.65 Aligned_cols=63 Identities=38% Similarity=0.602 Sum_probs=57.2
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ ++.++.|+.|||+|+++. +.|||++++.+...+ .++||+|||++++|++|+++++
T Consensus 327 ~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~ 390 (496)
T PRK06839 327 DYELIDEN-KNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIV 390 (496)
T ss_pred eEEEECCC-cCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEe
Confidence 57889987 788999999999999999 999999999888777 6899999999999999999874
No 38
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.67 E-value=2.6e-16 Score=97.44 Aligned_cols=66 Identities=36% Similarity=0.511 Sum_probs=59.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++++++++.|+.|||+++++. +.||+++++.+++.|..++||+|||+++++++|+++++
T Consensus 330 ~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~ 396 (504)
T PRK07514 330 VSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIV 396 (504)
T ss_pred cEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEe
Confidence 3678999555999999999999999999 99999999999888866889999999999999998874
No 39
>PLN02654 acetate-CoA ligase
Probab=99.66 E-value=2.1e-16 Score=101.71 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=56.1
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEc--CC-CccccCCchhhhcccC--CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKEMLD--DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~--~~-~~gY~~~~~~~~~~~~--~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ |++++.++.|||++++ |+ +.+||++++.+.+.+. .++||+|||++++|+||+++|+
T Consensus 463 ~~v~i~d~~-g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~ 532 (666)
T PLN02654 463 VQPVIVDEK-GKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLT 532 (666)
T ss_pred ceEEEECCC-CCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEe
Confidence 467899977 8999988899999998 56 9999999988876552 2689999999999999999984
No 40
>PRK08315 AMP-binding domain protein; Validated
Probab=99.66 E-value=2.7e-16 Score=98.53 Aligned_cols=66 Identities=44% Similarity=0.745 Sum_probs=59.2
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++++++++.|+.|||+++++. +.|||+++..+++.+..++||+|||++++|++|+++|+
T Consensus 380 ~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~ 446 (559)
T PRK08315 380 LEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIV 446 (559)
T ss_pred cEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEE
Confidence 3578899877899999999999999999 99999999988877756889999999999999999874
No 41
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.66 E-value=3.2e-16 Score=100.00 Aligned_cols=65 Identities=25% Similarity=0.236 Sum_probs=56.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEc--CC-CccccCCchhhhcccC--CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKEMLD--DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~--~~-~~gY~~~~~~~~~~~~--~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||++++ |+ +.|||++++.+.+.+. .++||+|||++++|+||+++|+
T Consensus 433 ~~~~i~d~~-g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~ 502 (637)
T PRK00174 433 IQPAVVDEE-GNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWIT 502 (637)
T ss_pred ceEEEECCC-CCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEE
Confidence 367899977 9999999999999999 57 9999999988766542 3689999999999999999874
No 42
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.66 E-value=2.9e-16 Score=97.26 Aligned_cols=64 Identities=28% Similarity=0.541 Sum_probs=58.0
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++++.|||+++|+. +.||++++..+.+.| .++||+|||++++|++|+++++
T Consensus 328 ~~~~i~~~~-~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~ 392 (497)
T PRK06145 328 VEIRIADGA-GRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLT 392 (497)
T ss_pred ceEEEECCC-CCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEe
Confidence 357888876 889999999999999999 999999999998888 6789999999999999999874
No 43
>PRK05691 peptide synthase; Validated
Probab=99.66 E-value=2.3e-16 Score=114.24 Aligned_cols=65 Identities=34% Similarity=0.559 Sum_probs=57.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC-CC--CeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-DD--GWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~-~~--~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++++++++.|+.|||+|+||+ +.|||++++.|++.|. .+ +||+|||+|+++ ||+|+|+
T Consensus 379 ~~v~Ivd~~~~~~~~~g~~GEl~v~Gp~v~~GY~~~~~~T~~~f~~~~g~~w~rTGDlg~~~-dG~l~i~ 447 (4334)
T PRK05691 379 HAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLR-DGELFVT 447 (4334)
T ss_pred CEEEEEcCCCCcCCCCCCeEEEEecCCccchhhcCChhhhHHHhhcCCCCceeecCCeEEEE-CCEEEEE
Confidence 4689999877899999999999999999 9999999999998883 23 499999999884 8999984
No 44
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.66 E-value=3.5e-16 Score=99.58 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=55.8
Q ss_pred CEEEEEcCCCCeeCC-CCCceEEEEEc--CC-CccccCCchhhhcccC--CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLP-DGKTGELCLKG--DV-FLGYRNKVEATKEMLD--DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~-~~~~Gel~i~~--~~-~~gY~~~~~~~~~~~~--~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ |++++ +|+.|||++++ |+ +.|||++++.+.+.+. .++||+|||++++|++|+++|+
T Consensus 424 ~~~~i~d~~-g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~ 494 (625)
T TIGR02188 424 IEPAVVDEE-GNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWIT 494 (625)
T ss_pred ceEEEECCC-CCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEE
Confidence 367899966 99998 89999999999 56 9999999987766552 3689999999999999999874
No 45
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.65 E-value=3.3e-16 Score=101.01 Aligned_cols=62 Identities=24% Similarity=0.413 Sum_probs=54.6
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|+|+. +.|||++++.+. ..++||+|||++++++||+|+|+
T Consensus 322 ~~v~i~d~~-g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~ 384 (705)
T PRK06060 322 YEIRVVAPD-GTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYR 384 (705)
T ss_pred cEEEEECCC-CCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEe
Confidence 367899987 899999999999999999 999999987642 24789999999999999999874
No 46
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.65 E-value=4.8e-16 Score=96.55 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=56.0
Q ss_pred EEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC--CCeEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD--DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~--~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++|+|++ ++++++|++|||+++++. +.|||++++.+.+.+.. ++|++|||++++|++|+++|+
T Consensus 333 ~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~ 398 (501)
T PRK13390 333 LHICDDD-GNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLA 398 (501)
T ss_pred EEEECCC-CCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEe
Confidence 6788876 899999999999999999 99999999998877632 579999999999999999874
No 47
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.65 E-value=4.1e-16 Score=97.34 Aligned_cols=63 Identities=40% Similarity=0.685 Sum_probs=57.3
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ +++++.|+.|||+++++. +.|||++++.+++.| .++||+|||+++++++|+++++
T Consensus 350 ~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~ 413 (528)
T PRK07470 350 EVQIQDDE-GRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYIT 413 (528)
T ss_pred EEEEECCC-CCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEe
Confidence 57788876 899999999999999999 999999999888777 6899999999999999999874
No 48
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.65 E-value=4.7e-16 Score=97.70 Aligned_cols=64 Identities=41% Similarity=0.699 Sum_probs=58.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +++++.++.|||+++++. +.||+++++.+.+.+..++||+|||++++|++|+++++
T Consensus 392 ~v~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~ 456 (560)
T PRK08751 392 DACIKDDA-GTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIV 456 (560)
T ss_pred eEEEECCC-CCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEE
Confidence 57788876 899999999999999999 99999999998888766799999999999999999874
No 49
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.65 E-value=3.5e-16 Score=98.67 Aligned_cols=64 Identities=27% Similarity=0.469 Sum_probs=57.2
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEc--CC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~--~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +.++++|+.|||++++ +. +.|||++++.+.+.| .++||+|||++++|++|+++|+
T Consensus 385 ~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~ 451 (570)
T PRK04319 385 IEAAIVDDQ-GNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQ 451 (570)
T ss_pred CEEEEECCC-CCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEE
Confidence 367889977 8889999999999997 77 999999999998888 5889999999999999999874
No 50
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.65 E-value=7.2e-16 Score=95.37 Aligned_cols=65 Identities=40% Similarity=0.708 Sum_probs=56.5
Q ss_pred CEEEEEcCCCCeeCC-CC-CceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLP-DG-KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~-~~-~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++ .+ ++|||+++|+. +.||+++++.+.+.|..++||+|||++++|+||+++++
T Consensus 302 ~~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~ 369 (471)
T PRK07787 302 VETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIV 369 (471)
T ss_pred cEEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEe
Confidence 357888877 78886 34 37999999999 99999999999888866899999999999999999874
No 51
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.64 E-value=6.3e-16 Score=97.10 Aligned_cols=63 Identities=33% Similarity=0.532 Sum_probs=56.0
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++++. +.||+++++.++.. .++||+|||+++++++|+++++
T Consensus 375 ~~v~i~d~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~ 438 (547)
T PRK13295 375 VEVRVVDAD-GAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRIS 438 (547)
T ss_pred cEEEEECCC-CCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEE
Confidence 367899977 899999999999999999 99999999887655 4689999999999999999874
No 52
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.64 E-value=6.3e-16 Score=97.50 Aligned_cols=51 Identities=29% Similarity=0.652 Sum_probs=46.9
Q ss_pred CCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 16 DGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 16 ~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++.|||+++|+. +.|||++++.+++.+..++||+|||+|++|++|+++|+
T Consensus 382 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~ 433 (563)
T PLN02860 382 SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLI 433 (563)
T ss_pred CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEe
Confidence 5688999999999 99999999999888877899999999999999999874
No 53
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.64 E-value=6.6e-16 Score=96.81 Aligned_cols=64 Identities=33% Similarity=0.535 Sum_probs=57.9
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +++++.|+.|||+++|+. +.||+++++.+...+..++||+|||++++|++|+++++
T Consensus 365 ~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~ 429 (547)
T PRK06087 365 EIKVVDEA-RKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT 429 (547)
T ss_pred eEEEEcCC-CCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence 57888876 899999999999999999 99999999988887766789999999999999999874
No 54
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.63 E-value=5.9e-16 Score=98.14 Aligned_cols=63 Identities=33% Similarity=0.560 Sum_probs=52.8
Q ss_pred EEEEcCCCCeeCCC--CCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPD--GKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~--~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+.|.|++.+++++. ++.|||+++|+. +.|||++++.+.+.| .++||+|||++++|++|+|+|+
T Consensus 374 v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~ 439 (579)
T PLN03102 374 VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIK 439 (579)
T ss_pred eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEE
Confidence 45556544666664 367999999999 999999999998888 6899999999999999999874
No 55
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.63 E-value=1e-15 Score=96.35 Aligned_cols=64 Identities=36% Similarity=0.543 Sum_probs=57.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcC---C-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~---~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++++ . +.||+++++.+.+.| .++||+|||++++++||+++|+
T Consensus 352 ~~~~i~d~~-~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~ 419 (542)
T PRK06155 352 FEARVVDEH-DQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFV 419 (542)
T ss_pred ceEEEECCC-CCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEE
Confidence 367888877 89999999999999997 6 899999999888877 6899999999999999999874
No 56
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.63 E-value=8.4e-16 Score=96.58 Aligned_cols=64 Identities=36% Similarity=0.582 Sum_probs=54.2
Q ss_pred CEEEEEcCCCCe-eC-----CCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSV-QL-----PDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~-~~-----~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +. ++ +.++.|||+++++. +.|||++++.+.+.| .++||+|||++++|++|+++|+
T Consensus 351 ~~v~i~d~~-~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~ 421 (540)
T PRK05857 351 VDVYLAATD-GIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIK 421 (540)
T ss_pred cEEEEECcc-ccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEe
Confidence 357788866 44 22 44788999999999 999999999988888 6889999999999999999874
No 57
>PRK12467 peptide synthase; Provisional
Probab=99.62 E-value=5e-16 Score=112.19 Aligned_cols=65 Identities=31% Similarity=0.325 Sum_probs=58.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCC-------CeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD-------GWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~-------~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++|.|++|||+|+|+. +.||+++++.|+++|..+ +||+|||+|++++||+|+|+
T Consensus 3418 ~~~~v~d~~-~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~ 3490 (3956)
T PRK12467 3418 RSIYVLDGQ-LNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYL 3490 (3956)
T ss_pred CEEEEECCC-CCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEe
Confidence 367899977 999999999999999999 999999999999988543 37999999999999999874
No 58
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.62 E-value=1.8e-15 Score=96.63 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=55.7
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcC---C-CccccCCchhhhccc---CCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEATKEML---DDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~---~-~~gY~~~~~~~~~~~---~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++|++++.|+.|||++++| . +.+||++++.+.+.+ ..++||+|||+|++|+||+|+|+
T Consensus 419 ~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~ 491 (628)
T TIGR02316 419 YHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFIL 491 (628)
T ss_pred ceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEE
Confidence 467899975599999999999999997 4 789999988776543 14679999999999999999974
No 59
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.62 E-value=1.4e-15 Score=102.36 Aligned_cols=64 Identities=28% Similarity=0.366 Sum_probs=57.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC------CCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.+.|+|++ +++++.|+.|||+|+|+. +.||+++++.+++.|.. ++||+|||++++++||+|+|+
T Consensus 786 ~~~i~d~~-~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~ 856 (1296)
T PRK10252 786 GLRILDAR-MRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYL 856 (1296)
T ss_pred EEEEECCC-CCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEe
Confidence 57889976 999999999999999999 99999999999888743 349999999999999999874
No 60
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.62 E-value=1.8e-15 Score=94.76 Aligned_cols=64 Identities=44% Similarity=0.752 Sum_probs=58.2
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +++++.|+.|||+++|+. +.||++++..+...+..++||+|||+++++++|+++++
T Consensus 383 ~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~ 447 (558)
T PRK12583 383 EVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIV 447 (558)
T ss_pred eEEEECCC-CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEE
Confidence 57889988 899999999999999999 99999999988777756889999999999999999874
No 61
>PRK12316 peptide synthase; Provisional
Probab=99.62 E-value=1.1e-15 Score=111.70 Aligned_cols=64 Identities=33% Similarity=0.342 Sum_probs=57.7
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC-------CCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD-------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~-------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ ++++|.|++|||+|+|++ +.|||++++.|++.|.. ++||+|||++++++||+|+|+
T Consensus 2329 ~~~i~d~~-~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~ 2400 (5163)
T PRK12316 2329 RAYILDAD-LNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYL 2400 (5163)
T ss_pred EEEEECCC-CCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEe
Confidence 57889977 899999999999999999 99999999999988732 359999999999999999874
No 62
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.61 E-value=2.4e-15 Score=94.12 Aligned_cols=65 Identities=38% Similarity=0.608 Sum_probs=56.5
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC---CCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD---DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~---~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++++++++.|+.|||+++|+. +.||++++..+++.|. ..+||+|||+++++++|+++++
T Consensus 367 ~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~ 435 (546)
T PRK08314 367 DARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFIT 435 (546)
T ss_pred EEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEE
Confidence 578888766899999999999999999 9999999988877763 2359999999999999999874
No 63
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.61 E-value=2.2e-15 Score=94.45 Aligned_cols=63 Identities=33% Similarity=0.607 Sum_probs=55.0
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++++. +.||+++++.+. ...++||+|||++++|++|+|+++
T Consensus 373 ~~v~i~~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~ 436 (538)
T TIGR03208 373 VEVKVIDAN-GAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRIN 436 (538)
T ss_pred CEEEEECCC-CCCCcCCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEE
Confidence 367889876 899999999999999999 999999988764 236789999999999999999874
No 64
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.61 E-value=2.8e-15 Score=90.66 Aligned_cols=65 Identities=35% Similarity=0.451 Sum_probs=56.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC------CC--eEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~------~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++++. +.||+++++.+.+.|.. ++ ||+|||++++|++|+++++
T Consensus 301 ~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~ 374 (408)
T TIGR01733 301 TRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFL 374 (408)
T ss_pred ceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEe
Confidence 357889988 899999999999999999 99999999988777632 22 9999999999999999874
No 65
>PLN02479 acetate-CoA ligase
Probab=99.61 E-value=1.4e-15 Score=95.98 Aligned_cols=63 Identities=32% Similarity=0.660 Sum_probs=54.9
Q ss_pred EEEEcCCCCeeCCCC--CceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPDG--KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~~--~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++|+|++++++++.+ +.|||+++|+. +.|||++++.+.+.| .++||+|||++++|++|+++|+
T Consensus 384 ~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~ 449 (567)
T PLN02479 384 LDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIK 449 (567)
T ss_pred eeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEe
Confidence 567775557888764 67999999999 999999999998888 6889999999999999999874
No 66
>PRK07529 AMP-binding domain protein; Validated
Probab=99.61 E-value=2.2e-15 Score=96.46 Aligned_cols=63 Identities=30% Similarity=0.559 Sum_probs=51.6
Q ss_pred EEEE--EcCCCC---eeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTI--IDPVTS---VQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i--~d~~~g---~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++| +|++ + +++++|+.|||+++||. +.||++++. +...+..++||+|||++++|+||+++|+
T Consensus 396 ~v~i~~~d~~-g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~ 464 (632)
T PRK07529 396 RVRVVILDDA-GRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLT 464 (632)
T ss_pred eEEEEEcCCC-CcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEE
Confidence 3455 4655 6 78999999999999999 999998654 4445546889999999999999999874
No 67
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.61 E-value=1.5e-15 Score=96.41 Aligned_cols=63 Identities=32% Similarity=0.413 Sum_probs=56.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcC--C-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGD--V-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~--~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++.|+|++ |+++++++ |+|+++.| + +.+||++++.+.+++... ||.|||.+++|+||++||+
T Consensus 350 ~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~ 415 (528)
T COG0365 350 YAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLH 415 (528)
T ss_pred ceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEE
Confidence 468899988 99999999 99999986 5 999999999998888433 9999999999999999985
No 68
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.61 E-value=2.3e-15 Score=94.39 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=50.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++...+++.|+.|||+++|++ +.|||+++..+ .++||+|||+++++ +|+|+|+
T Consensus 354 ~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~ 414 (525)
T PRK05851 354 MEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVC 414 (525)
T ss_pred cEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEE
Confidence 3678888774456899999999999999 99999987532 46899999999997 7999874
No 69
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.61 E-value=3e-15 Score=94.01 Aligned_cols=61 Identities=28% Similarity=0.518 Sum_probs=53.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++|+. +.||++++.. .. .++||+|||++++|++|+++|+
T Consensus 385 ~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~-~~g~~~TGDl~~~~~~g~l~~~ 446 (549)
T PRK07788 385 VTVKILDEN-GNEVPRGVVGRIFVGNGFPFEGYTDGRDK---QI-IDGLLSSGDVGYFDEDGLLFVD 446 (549)
T ss_pred cEEEEECCC-cCCCCCCCeEEEEEeCCCccccccCCCcc---cc-cCCceecCceEEEcCCCCEEEe
Confidence 367899977 999999999999999999 9999998765 22 4789999999999999999874
No 70
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.61 E-value=2e-15 Score=93.64 Aligned_cols=63 Identities=27% Similarity=0.525 Sum_probs=57.5
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ +++++.|+.|||+++|+. +.+|+++++.+++.| .++||+|||+|+++++|+++++
T Consensus 351 ~~~i~~~~-~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~ 414 (523)
T PRK08316 351 ETRVVDDD-GNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVV 414 (523)
T ss_pred EEEEEcCC-CCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEe
Confidence 57788876 899999999999999999 999999999888888 6899999999999999999874
No 71
>PRK12316 peptide synthase; Provisional
Probab=99.60 E-value=2e-15 Score=110.47 Aligned_cols=65 Identities=31% Similarity=0.333 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC------CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++|.|+.|||+|+|+. +.||+++++.+++.|.. ++||+|||++++++||+|+|+
T Consensus 834 ~~~~i~d~~-~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~ 905 (5163)
T PRK12316 834 LACYILDAN-LEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYA 905 (5163)
T ss_pred CEEEEECCC-CCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEee
Confidence 367899987 999999999999999999 99999999999887732 359999999999999999874
No 72
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.60 E-value=2.8e-15 Score=92.88 Aligned_cols=65 Identities=37% Similarity=0.683 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++++. +.||++++..+...+..++||+|||+++++++|+++++
T Consensus 346 ~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~ 411 (513)
T PRK07656 346 VENKIVNEL-GEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV 411 (513)
T ss_pred cEEEEECCC-CCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence 367888877 999999999999999999 99999999888877755889999999999999998874
No 73
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.60 E-value=4.2e-15 Score=92.26 Aligned_cols=64 Identities=28% Similarity=0.493 Sum_probs=57.6
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +++++.|+.|||+++++. +.+||+++..+...+..++||+|||+++++++|+++++
T Consensus 324 ~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~ 388 (502)
T PRK08276 324 EVRILDED-GNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLT 388 (502)
T ss_pred EEEEECCC-CCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEe
Confidence 57888866 889999999999999999 99999999999888866699999999999999998874
No 74
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.59 E-value=3.3e-15 Score=93.23 Aligned_cols=63 Identities=38% Similarity=0.737 Sum_probs=57.5
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +++++.|+.|||+++++. +.||++++..+...+ .++||+|||+++++++|+++|+
T Consensus 349 ~v~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~ 412 (524)
T PRK06188 349 RVALLDED-GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIV 412 (524)
T ss_pred EEEEEcCC-CCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEE
Confidence 57888877 999999999999999999 999999999888777 6889999999999999999874
No 75
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.59 E-value=4.2e-15 Score=93.71 Aligned_cols=64 Identities=39% Similarity=0.663 Sum_probs=57.0
Q ss_pred EEEEEcCCC-CeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVT-SVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~-g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++. +.+++.|+.|||+++++. +.||+++++.+.+.| .++||+|||++++|++|+++|+
T Consensus 399 ~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~ 464 (573)
T PRK05605 399 EVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIV 464 (573)
T ss_pred EEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEE
Confidence 578888774 588999999999999999 999999999988887 5679999999999999999874
No 76
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.59 E-value=4.8e-15 Score=92.56 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=49.3
Q ss_pred CEEEEEcCCCCeeCCCC--CceEEEEEcCC---CccccCCchhhhcccCC--------CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDG--KTGELCLKGDV---FLGYRNKVEATKEMLDD--------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~--~~Gel~i~~~~---~~gY~~~~~~~~~~~~~--------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.| ++|||+++||. +.|||+++. ++..+.. ..||+|||+|++|+||+|+|+
T Consensus 300 ~~~~ivd~~-g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~ 376 (499)
T PLN03051 300 TRFVLLNDN-GVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQ 376 (499)
T ss_pred ceEEEECCC-CCCCCCCCCcceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEEEE
Confidence 468899977 8999988 47999999996 479997653 3322211 127999999999999999985
No 77
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.59 E-value=4e-15 Score=93.64 Aligned_cols=64 Identities=42% Similarity=0.728 Sum_probs=57.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++++++++.|+.|||+++++. +.||+++++.+...+ .++||+|||+++++++|+++++
T Consensus 386 ~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~ 450 (563)
T PRK06710 386 EAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVK 450 (563)
T ss_pred eEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEe
Confidence 467788665889999999999999999 999999999888777 6889999999999999998874
No 78
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.58 E-value=3.6e-15 Score=93.61 Aligned_cols=63 Identities=30% Similarity=0.603 Sum_probs=57.3
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ ++.++.|+.|||+++|+. +.||+++++.+++.| .++||+|||+++++++|+++++
T Consensus 355 ~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~ 418 (542)
T PRK07786 355 AARVVDEN-MNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVV 418 (542)
T ss_pred eEEEECCC-CCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEE
Confidence 57788876 889999999999999999 999999999998888 6789999999999999998874
No 79
>PRK12582 acyl-CoA synthetase; Provisional
Probab=99.58 E-value=2.9e-15 Score=95.67 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=46.9
Q ss_pred CCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEE-C---CCCcEEEC
Q psy4969 14 LPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYR-L---PDGTHFIW 66 (66)
Q Consensus 14 ~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~-d---~dG~l~~~ 66 (66)
++.|+.|||+++|+. +.|||++++.+++.|..++||+|||+|++ | ++|+|+|+
T Consensus 418 ~~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~ 475 (624)
T PRK12582 418 APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFD 475 (624)
T ss_pred ccCCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEe
Confidence 456889999999999 99999999999888877899999999998 4 46898874
No 80
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.58 E-value=6.3e-15 Score=92.72 Aligned_cols=63 Identities=40% Similarity=0.663 Sum_probs=57.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +++++.|+.|||+++++. +.+|++++..+.+.| .++||+|||+++++++|+++++
T Consensus 388 ~~~i~~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~ 451 (560)
T PRK08974 388 EIKLVDDD-GNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIV 451 (560)
T ss_pred EEEEECCC-CCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEE
Confidence 57888876 899999999999999999 999999999888777 6899999999999999998874
No 81
>PRK12467 peptide synthase; Provisional
Probab=99.58 E-value=5.5e-15 Score=107.00 Aligned_cols=65 Identities=29% Similarity=0.330 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC-------CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD-------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~-------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++|.|+.|||+|+|+. +.||+++++.+++.|.. .+||+|||++++++||+|+|+
T Consensus 837 ~~~~i~d~~-~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~ 909 (3956)
T PRK12467 837 LGLYILDHY-LNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYL 909 (3956)
T ss_pred CEEEEECCC-CCCCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEe
Confidence 367889977 899999999999999999 99999999999888732 249999999999999999874
No 82
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.57 E-value=7.5e-15 Score=90.97 Aligned_cols=64 Identities=30% Similarity=0.365 Sum_probs=54.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC---CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD---DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~---~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +.++++|+.|||+++|+. +.||+++++.+.+.|. ..+||+|||+|++|++ +|+++
T Consensus 325 ~~~~i~~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~ 392 (502)
T TIGR01734 325 MNLFIMDEE-GEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQ 392 (502)
T ss_pred CEEEEECCC-CCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEe
Confidence 367889977 899999999999999999 9999999988876652 2359999999999976 88763
No 83
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.57 E-value=6.2e-15 Score=92.33 Aligned_cols=63 Identities=41% Similarity=0.732 Sum_probs=54.5
Q ss_pred EEEEcCCCCeeCCC-C-CceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPD-G-KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~-~-~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++|+|++.+++++. | +.|||+++|+. +.||+++++.+...| .++||+|||++++|++|+++++
T Consensus 370 ~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~ 435 (545)
T PRK08162 370 VTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIK 435 (545)
T ss_pred EEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEE
Confidence 56778655788876 3 46999999999 999999999998888 6789999999999999999874
No 84
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.57 E-value=9.5e-15 Score=90.90 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=56.8
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +.++++|+.|||+++++. +.+|+++++.++..| .++||+|||+++++++|+++++
T Consensus 340 ~v~i~d~~-~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~ 403 (508)
T TIGR02262 340 RLRLVGDG-GQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYA 403 (508)
T ss_pred EEEEECCC-CCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEe
Confidence 57888855 899999999999999999 999999999888877 6789999999999999998873
No 85
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.57 E-value=7.9e-15 Score=90.54 Aligned_cols=62 Identities=34% Similarity=0.621 Sum_probs=54.9
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|.++ +++++.++.|||++++|. +.||++++..++..| .++||+|||++++++||+++++
T Consensus 317 ~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~ 379 (483)
T PRK03640 317 ELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVL 379 (483)
T ss_pred EEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEe
Confidence 5667763 578999999999999999 999999999888887 6889999999999999998873
No 86
>PRK05691 peptide synthase; Validated
Probab=99.57 E-value=6.8e-15 Score=106.90 Aligned_cols=64 Identities=30% Similarity=0.343 Sum_probs=57.5
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC-------CCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-------DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~-------~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.+.|+|.. ++++|.|.+|||+|+|+. +.||+++++.|+++|. ..+||+|||++++++||+|+|+
T Consensus 4050 ~~~v~d~~-~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~ 4121 (4334)
T PRK05691 4050 RLYLLDEA-LELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYV 4121 (4334)
T ss_pred EEEEECCC-CCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEe
Confidence 57888866 899999999999999999 9999999999998883 2469999999999999999875
No 87
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.56 E-value=1e-14 Score=91.67 Aligned_cols=63 Identities=40% Similarity=0.589 Sum_probs=55.3
Q ss_pred EEEEcCCCCeeCCCCC------------ceEEEE-EcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPDGK------------TGELCL-KGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~~~------------~Gel~i-~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++|+|++++.+++.++ .|||++ +++. +.||+++++.+.+.| .++||+|||+++++++|+++|+
T Consensus 324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~ 400 (529)
T PRK07867 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFA 400 (529)
T ss_pred EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEe
Confidence 4677755588888888 899998 9999 999999999988888 6899999999999999999874
No 88
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.56 E-value=1.1e-14 Score=92.83 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=55.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcC---C-CccccCCchhhhcccC---CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEATKEMLD---DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~---~-~~gY~~~~~~~~~~~~---~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++|+++++|+.|||++++| . +.+||++++.+.+.+. .++||+|||++++|+||+++|+
T Consensus 420 ~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~ 492 (629)
T PRK10524 420 YNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFIL 492 (629)
T ss_pred ceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEE
Confidence 367899983499999999999999997 5 8899999887765431 3579999999999999999874
No 89
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.56 E-value=1e-14 Score=92.35 Aligned_cols=62 Identities=35% Similarity=0.729 Sum_probs=54.3
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ ++.++.++.|||+++|+. +.|||++ ..+.+.+..++||+|||++++ ++|+++|+
T Consensus 395 ~v~i~d~~-~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~ 457 (579)
T PRK09192 395 EIEIRNEA-GMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYIT 457 (579)
T ss_pred EEEEECCC-CCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEE
Confidence 57888876 889999999999999999 9999999 556666667889999999999 99999874
No 90
>PRK13382 acyl-CoA synthetase; Provisional
Probab=99.56 E-value=1.3e-14 Score=91.16 Aligned_cols=61 Identities=30% Similarity=0.583 Sum_probs=51.9
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++++. +.||+ ++.+. .+ .++||+|||++++|++|+++|+
T Consensus 374 ~~~~i~d~~-~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~-~~g~~~TGDl~~~~~~g~l~~~ 435 (537)
T PRK13382 374 TEIRILDQD-FREVPTGEVGTIFVRNDTQFDGYT--SGSTK-DF-HDGFMASGDVGYLDENGRLFVV 435 (537)
T ss_pred cEEEEECCC-CCCCCCCCeeEEEEEcCCcccCcc--ccchh-hc-cCCCEeeCceEEEeCCCcEEEe
Confidence 367899987 899999999999999999 99998 44443 34 4789999999999999999874
No 91
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.56 E-value=1.1e-14 Score=93.58 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=51.7
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcC--C-CccccCCchhhh--cc-cC-CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGD--V-FLGYRNKVEATK--EM-LD-DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~--~-~~gY~~~~~~~~--~~-~~-~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ |+++ +|+.|||++++| + +.|||++++.+. +. |. .++||+|||+|++|+||+|+|+
T Consensus 448 ~~v~ivd~~-g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~ 518 (652)
T TIGR01217 448 TAVQSWDPE-GKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIH 518 (652)
T ss_pred CceEEECCC-CCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEE
Confidence 357889977 8888 599999999996 5 899999987543 22 21 2578999999999999999984
No 92
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=99.56 E-value=9.3e-15 Score=93.22 Aligned_cols=51 Identities=27% Similarity=0.353 Sum_probs=45.1
Q ss_pred CCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEE----CCCCcEEEC
Q psy4969 16 DGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYR----LPDGTHFIW 66 (66)
Q Consensus 16 ~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~----d~dG~l~~~ 66 (66)
.+..|||+++|+. +.|||++++.+.+.|..+|||+|||+|++ |++|+|+|+
T Consensus 408 ~~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~ 463 (614)
T PRK08180 408 VGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFD 463 (614)
T ss_pred CCCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEe
Confidence 4557999999999 99999999999888867899999999999 568998874
No 93
>KOG1180|consensus
Probab=99.54 E-value=8.9e-15 Score=93.02 Aligned_cols=65 Identities=31% Similarity=0.465 Sum_probs=53.3
Q ss_pred EEEEEcCCCCeeCCCC--CceEEEEEcCC-CccccCCchhhhcccCC-CC--eEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDG--KTGELCLKGDV-FLGYRNKVEATKEMLDD-DG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~--~~Gel~i~~~~-~~gY~~~~~~~~~~~~~-~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
+++++|-+.+.-.+.+ ..|||+|+|+. ..||+++++.|++.|+. +| ||+|||+|.+.+||.|.|.
T Consensus 464 eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkII 534 (678)
T KOG1180|consen 464 EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKII 534 (678)
T ss_pred EEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEe
Confidence 5677775434333333 36999999999 99999999999999976 78 9999999999999999873
No 94
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.54 E-value=3.1e-14 Score=88.73 Aligned_cols=63 Identities=29% Similarity=0.495 Sum_probs=54.9
Q ss_pred EEEEcCCCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCC-CeEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDD-GWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~-~~~~TGD~~~~d~dG~l~~~ 66 (66)
++|+|++ +++++.|+.|||+++++.+.+|+++++.+...+..+ +||+|||+++++++|+++|+
T Consensus 338 ~~i~d~~-~~~~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~ 401 (511)
T PRK13391 338 LHILDDD-GAELPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLT 401 (511)
T ss_pred EEEECCC-CCCCCCCCceEEEEecCcceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEe
Confidence 6788866 899999999999999988668999999888777544 89999999999999999874
No 95
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.54 E-value=1.8e-14 Score=90.39 Aligned_cols=59 Identities=34% Similarity=0.552 Sum_probs=52.5
Q ss_pred EcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 6 IDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 6 ~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+|++ +++++.|+.|||+++++. +.|||++++.+++.| .++||+|||+++++++|+++|+
T Consensus 381 ~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~ 440 (541)
T TIGR03205 381 LDDP-TKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLV 440 (541)
T ss_pred cCCC-CccCCCCCeeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEE
Confidence 3544 788999999999999999 999999999988888 5789999999999999999874
No 96
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.53 E-value=2.8e-14 Score=91.49 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=51.6
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcC--C-CccccCCchhhh--cc-cC-CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGD--V-FLGYRNKVEATK--EM-LD-DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~--~-~~gY~~~~~~~~--~~-~~-~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ |+++ .|+.|||+|++| + +.|||++++.++ .. |. .++||+|||++++|+||+|+|+
T Consensus 447 ~~~~ivd~~-g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~ 517 (655)
T PRK03584 447 MAVEAWDED-GRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIY 517 (655)
T ss_pred ceeEEECCC-CCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEE
Confidence 367899977 8888 799999999996 5 889999987542 22 21 2578899999999999999984
No 97
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.53 E-value=1.9e-14 Score=90.57 Aligned_cols=60 Identities=40% Similarity=0.531 Sum_probs=50.4
Q ss_pred EEcCCCCeeC-CCCCceEEEEE-cCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 5 IIDPVTSVQL-PDGKTGELCLK-GDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 5 i~d~~~g~~~-~~~~~Gel~i~-~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++|++ |+++ +.+..|||+++ |+. +.|||++++.+++.| .++||+|||++++|++|+++++
T Consensus 337 ~~d~~-g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~ 399 (540)
T PRK13388 337 RFDAH-GALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFA 399 (540)
T ss_pred eccCc-cccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEe
Confidence 44544 5555 34678999998 999 999999999998888 6789999999999999999874
No 98
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.53 E-value=4.1e-14 Score=88.79 Aligned_cols=63 Identities=30% Similarity=0.500 Sum_probs=52.7
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ ++++++++.|||+++++. +.||++.+.... ....++||+|||++++|++|+++++
T Consensus 370 ~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~ 433 (545)
T PRK07768 370 EVRVVDED-GQVLPPRGVGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVC 433 (545)
T ss_pred EEEEECCC-CCCCCCCCEEEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEE
Confidence 57888866 899999999999999999 999998654433 3335789999999999999999874
No 99
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.52 E-value=5.4e-14 Score=87.55 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=55.2
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-Cc-cccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~-gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|+. +++++.|+.|||+++++. +. +|++++..+...+ .++||+|||++++|++|+++++
T Consensus 334 ~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~ 398 (509)
T PRK12406 334 ELRFVDED-GRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLC 398 (509)
T ss_pred EEEEECCC-CCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEe
Confidence 57888976 899999999999999998 54 9999988877665 6899999999999999999874
No 100
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.51 E-value=7.1e-14 Score=86.47 Aligned_cols=63 Identities=40% Similarity=0.557 Sum_probs=54.4
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC-C--CeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD-D--GWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~-~--~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ +.+++.++.|||+++++. +.|||++++.+...|.. + +||+|||++++ ++|+++++
T Consensus 328 ~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~ 394 (503)
T PRK04813 328 PLLIIDEE-GTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQ 394 (503)
T ss_pred EEEEECCC-CCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEe
Confidence 56788876 889999999999999999 99999999988776622 3 49999999999 89999874
No 101
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.51 E-value=5.5e-14 Score=87.04 Aligned_cols=63 Identities=43% Similarity=0.753 Sum_probs=56.5
Q ss_pred EEEEEcCCCCeeCCC--CCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPD--GKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~--~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ +++++. |+.|||+++++. +.+|+++++.+.+.| .++||+|||+++++++|+++++
T Consensus 349 ~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~ 414 (521)
T PRK06187 349 EARIVDDD-GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYIT 414 (521)
T ss_pred EEEEECCC-CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEe
Confidence 57889987 888888 999999999999 999999998888877 5779999999999999998763
No 102
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.50 E-value=8.3e-14 Score=87.03 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=52.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+++|+. +.+|++.+. ..+ .++||+|||++++|++|+++++
T Consensus 354 ~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TGDl~~~d~~G~l~i~ 415 (516)
T PRK13383 354 CPVRILDRN-NRPVGPRVTGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTGDMGYLDNAGRLFIV 415 (516)
T ss_pred cEEEEECCC-CCCCCCCCceEEEEecCcccccccCCch---hhe-ecCceecceeEEEcCCccEEEe
Confidence 357889977 899999999999999999 999998754 223 5789999999999999999874
No 103
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.48 E-value=1.1e-13 Score=86.01 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=54.9
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC-----------CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD-----------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~-----------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+++|+. +.|||+++..+...|.. ..||.|||++++|++|+++++
T Consensus 337 ~~~~i~~~~-~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~ 413 (515)
T TIGR03098 337 AEVLVLRED-GSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFV 413 (515)
T ss_pred CEEEEECCC-CCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEE
Confidence 357888866 899999999999999999 99999998877665521 248999999999999999873
No 104
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.45 E-value=3.2e-13 Score=85.48 Aligned_cols=63 Identities=25% Similarity=0.458 Sum_probs=49.7
Q ss_pred EEEEEcCCCCeeCC--CCCceEEEEEcCC-CccccCCchhh----------------hcccCCCCeEecCceEEECCCCc
Q psy4969 2 SRTIIDPVTSVQLP--DGKTGELCLKGDV-FLGYRNKVEAT----------------KEMLDDDGWLHTGDLAYRLPDGT 62 (66)
Q Consensus 2 ~v~i~d~~~g~~~~--~~~~Gel~i~~~~-~~gY~~~~~~~----------------~~~~~~~~~~~TGD~~~~d~dG~ 62 (66)
+++|+|+ +.+++ .++.|||+++|+. +.|||++++.+ ...+..++||+|||++++++||+
T Consensus 368 ~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~ 445 (576)
T PRK05620 368 EYRIVND--GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445 (576)
T ss_pred eEEEecC--CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCce
Confidence 4567764 55553 4678999999999 99999998876 22233568999999999999999
Q ss_pred EEEC
Q psy4969 63 HFIW 66 (66)
Q Consensus 63 l~~~ 66 (66)
++|+
T Consensus 446 l~~~ 449 (576)
T PRK05620 446 LTIH 449 (576)
T ss_pred EEEE
Confidence 9874
No 105
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.44 E-value=2.7e-13 Score=85.28 Aligned_cols=60 Identities=30% Similarity=0.352 Sum_probs=49.9
Q ss_pred EEEEEcCCCCeeCCCC--CceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDG--KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~--~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ +++++.+ +.|||+++|+. +.|||+++. ..+ .++||+|||++++|+||+++++
T Consensus 366 ~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~ 428 (539)
T PRK07008 366 DMKIVGDD-GRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQIT 428 (539)
T ss_pred EEEEECCC-CCccCCCCCcceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEe
Confidence 57788876 7777754 57999999999 999999883 234 3689999999999999999874
No 106
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.42 E-value=5.8e-13 Score=86.41 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=43.8
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCC--chh-------hhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNK--VEA-------TKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~--~~~-------~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ + .++.|||+++|+. +.|||++ ++. +...+..++||+|||++++|+||+++|+
T Consensus 541 ~~~i~d~~-~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~ 610 (718)
T PRK08043 541 DARLLSVP-G----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQ 610 (718)
T ss_pred eeEEecCC-C----CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEE
Confidence 45566544 3 2456999999999 9999983 432 1112224689999999999999999874
No 107
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.37 E-value=2.2e-12 Score=81.17 Aligned_cols=61 Identities=33% Similarity=0.394 Sum_probs=49.4
Q ss_pred EEEEEcCCCCeeCCCC--CceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDG--KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~--~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ +++++.+ ..|||+++|+. +.|||+.. ...+..++||+|||+++++++|+++++
T Consensus 366 ~i~v~d~~-~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~g~~~~~ 429 (542)
T PRK06018 366 EMKITDDA-GKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRIT 429 (542)
T ss_pred EEEEECCC-CCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCCccEEEE
Confidence 57788876 8877653 67999999999 99999832 234446789999999999999999874
No 108
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.34 E-value=3.9e-12 Score=85.40 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=40.7
Q ss_pred CCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 17 GKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 17 ~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++.|||+++|+. +.||++++.........++||+|||++++|+||+++++
T Consensus 979 ~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~ 1029 (1140)
T PRK06814 979 DEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIK 1029 (1140)
T ss_pred CCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEE
Confidence 578999999999 99999876533221125789999999999999999874
No 109
>KOG1175|consensus
Probab=99.32 E-value=5.8e-12 Score=81.35 Aligned_cols=65 Identities=29% Similarity=0.328 Sum_probs=53.9
Q ss_pred CEEEEEcCCCCeeCCCC-CceEEEEEc--C-C-CccccCCchhhhcccCC--CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDG-KTGELCLKG--D-V-FLGYRNKVEATKEMLDD--DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~-~~Gel~i~~--~-~-~~gY~~~~~~~~~~~~~--~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+.+.|+|++ |++++++ +.|+|+++. | + +.+||++++....++.. .++|.|||.+++|+|||++|.
T Consensus 423 ~~v~i~de~-g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~ 494 (626)
T KOG1175|consen 423 YDVQILDEN-GNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWIL 494 (626)
T ss_pred cceEEECCC-CCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEE
Confidence 467899986 9988886 889999996 3 5 88999999966554433 789999999999999999984
No 110
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.30 E-value=1.3e-11 Score=76.81 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=51.5
Q ss_pred EEEEEcCCCCeeCCCCCc--eEEEEEcCC-CccccCCchhhhcccCC---CCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKT--GELCLKGDV-FLGYRNKVEATKEMLDD---DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~--Gel~i~~~~-~~gY~~~~~~~~~~~~~---~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.++|+|++ ++++++|+. |+|+ +++. +.||++++..+++.|.. .+||+|||++++|++|+|+++
T Consensus 359 ~~~i~~~~-~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~ 427 (533)
T PRK07798 359 RTVVLDED-GNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLL 427 (533)
T ss_pred eEEEECCC-CCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEE
Confidence 57788877 888999887 6665 4567 99999999988877732 359999999999999999874
No 111
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.26 E-value=1.5e-11 Score=78.26 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=44.1
Q ss_pred eCCCCCceEEE--EEcCC-CccccCCchhhhcccC------CCCeEecCceEEECCCCcEEEC
Q psy4969 13 QLPDGKTGELC--LKGDV-FLGYRNKVEATKEMLD------DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 13 ~~~~~~~Gel~--i~~~~-~~gY~~~~~~~~~~~~------~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.+++|+.|||+ ++++. +.|| +++..+.+.|. .++||+|||+|++|+||+|+++
T Consensus 397 ~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~ 458 (600)
T PRK08279 397 KVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFV 458 (600)
T ss_pred cCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEe
Confidence 57889999998 67888 9999 88887766541 2579999999999999999874
No 112
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.25 E-value=2.2e-11 Score=75.81 Aligned_cols=44 Identities=30% Similarity=0.516 Sum_probs=38.1
Q ss_pred CCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 17 GKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 17 ~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++.|||++++|. +.|||+++. ..++||+|||++++|+||+|+|+
T Consensus 299 g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~ 343 (452)
T PRK07445 299 NQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHIL 343 (452)
T ss_pred CCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEE
Confidence 678999999999 999997532 24689999999999999999874
No 113
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.24 E-value=3.3e-11 Score=73.70 Aligned_cols=48 Identities=29% Similarity=0.532 Sum_probs=42.0
Q ss_pred CceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 18 KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 18 ~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+.|||+++++. +.|||+++..+...+ .++||+|||++++++||+++++
T Consensus 291 ~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~ 339 (436)
T TIGR01923 291 GHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVL 339 (436)
T ss_pred CceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEe
Confidence 67999999999 999999877776555 6789999999999999999874
No 114
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.17 E-value=4.8e-11 Score=73.75 Aligned_cols=45 Identities=31% Similarity=0.509 Sum_probs=39.4
Q ss_pred eEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 20 GELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 20 Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
|||+++|+. +.|||++++.+.... .++||+|||+|++| +|+++|+
T Consensus 305 gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~ 350 (458)
T PRK09029 305 GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTIL 350 (458)
T ss_pred CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEe
Confidence 899999999 999999888775443 57899999999999 9999874
No 115
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.17 E-value=7.8e-11 Score=79.18 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=41.1
Q ss_pred cCCCC--eeCCCCCceEEEEEcCCCccccCCchhh--hcccC-CCCeEecCceEEECCCCcEEEC
Q psy4969 7 DPVTS--VQLPDGKTGELCLKGDVFLGYRNKVEAT--KEMLD-DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 7 d~~~g--~~~~~~~~Gel~i~~~~~~gY~~~~~~~--~~~~~-~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
|++ | +.+++|++|||+++++. |+ +++.+ ...|. .++||+|||+|++|+||+|+|+
T Consensus 796 d~~-G~~~~~~~ge~Gel~~~~~~---~~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~ 855 (994)
T PRK07868 796 DDR-GFVRRAEVNEVGVLLARARG---PI-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLV 855 (994)
T ss_pred cCC-ceEEEcCCCCceEEEEecCC---CC-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEe
Confidence 444 6 67889999999999886 22 34332 22342 3789999999999999999985
No 116
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.14 E-value=2.4e-10 Score=74.91 Aligned_cols=64 Identities=23% Similarity=0.137 Sum_probs=47.7
Q ss_pred CEEEEEcCCCCeeCCCCC--ceEEEEEcCC---CccccCCchhhhcccC------CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGK--TGELCLKGDV---FLGYRNKVEATKEMLD------DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~--~Gel~i~~~~---~~gY~~~~~~~~~~~~------~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ |++++.|+ .|||+++++. ..+|+++. .....|. ...||+|||++++|++|+++|+
T Consensus 534 ~~v~v~d~~-g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~ 608 (728)
T PLN03052 534 CKLFILDDS-GNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAH 608 (728)
T ss_pred ceEEEECCC-CCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEE
Confidence 467899977 99999885 5999998654 45677764 2333331 1238999999999999999884
No 117
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.04 E-value=5.3e-10 Score=71.66 Aligned_cols=64 Identities=36% Similarity=0.372 Sum_probs=56.3
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.+.|+|.. .+++|.+..|||+|.|.. ..||++.++.+...|..+.+|+|||++++..+|.+.++
T Consensus 551 ~~~ild~~-~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~l 615 (642)
T COG1020 551 QLYILDQG-LRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYL 615 (642)
T ss_pred eEEEECCC-CCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEe
Confidence 57788855 899999999999999999 99999999999998844348999999999999988763
No 118
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.97 E-value=8.1e-10 Score=66.60 Aligned_cols=45 Identities=33% Similarity=0.626 Sum_probs=37.8
Q ss_pred ceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 19 TGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 19 ~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
.|+|+++|+. +.||++++..+ .+..++||+|||++++ ++|+++|+
T Consensus 207 ~Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~ 252 (358)
T PRK07824 207 DGRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVL 252 (358)
T ss_pred CCEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEE
Confidence 4999999999 99999988643 3445789999999999 88998874
No 119
>KOG1179|consensus
Probab=98.84 E-value=1e-08 Score=66.04 Aligned_cols=54 Identities=33% Similarity=0.472 Sum_probs=42.7
Q ss_pred eCCCCCceEEEEE----cCC--CccccCCchhhhccc-----C-CCCeEecCceEEECCCCcEEEC
Q psy4969 13 QLPDGKTGELCLK----GDV--FLGYRNKVEATKEML-----D-DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 13 ~~~~~~~Gel~i~----~~~--~~gY~~~~~~~~~~~-----~-~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+|++||+|.|+-+ .|. |.||.+.++.++++. . .+-||.|||+-.+|+.|+|||+
T Consensus 442 ~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~ 507 (649)
T KOG1179|consen 442 PCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFK 507 (649)
T ss_pred ECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEe
Confidence 6889999977654 354 899999777776543 2 2449999999999999999984
No 120
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=98.72 E-value=3.3e-08 Score=61.14 Aligned_cols=47 Identities=43% Similarity=0.495 Sum_probs=36.7
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECCC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 60 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~d 60 (66)
.++|+|+++++++++|+.|||++++.. ...+ +..||+|||+++++++
T Consensus 256 ~~eivd~~~g~~v~~Ge~Gelvvt~~~-----------~~~~-p~~ry~TGDl~~~~~~ 302 (422)
T TIGR02155 256 YPEIIDPHTGEVLPDGEEGELVFTTLT-----------KEAL-PVIRYRTRDLTRLLPG 302 (422)
T ss_pred EEEEECCCCCCCCCCCCeeEEEEecCC-----------cccc-ceeeEEcCcEEEEECC
Confidence 356889766999999999999998633 2233 4569999999999775
No 121
>PRK09188 serine/threonine protein kinase; Provisional
Probab=98.28 E-value=7.3e-07 Score=55.17 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred CCCeEecCceEEE-CCCCcEEEC
Q psy4969 45 DDGWLHTGDLAYR-LPDGTHFIW 66 (66)
Q Consensus 45 ~~~~~~TGD~~~~-d~dG~l~~~ 66 (66)
.+|||+|||+|++ |++|+|+|+
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~ 229 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWS 229 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEE
Confidence 6799999999998 799999984
No 122
>PRK08308 acyl-CoA synthetase; Validated
Probab=98.01 E-value=1.3e-05 Score=49.34 Aligned_cols=21 Identities=33% Similarity=0.435 Sum_probs=19.0
Q ss_pred CCeEecCceEEECCCCcEEEC
Q psy4969 46 DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 46 ~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++||+|||++++|++|+++|+
T Consensus 290 ~~~~~TGDl~~~~~dg~l~~~ 310 (414)
T PRK08308 290 DKEIFTKDLGYKSERGTLHFM 310 (414)
T ss_pred CceEECCceEEECCCccEEEe
Confidence 579999999999999999874
No 123
>KOG3628|consensus
Probab=98.00 E-value=1.2e-05 Score=55.39 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=50.2
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC------------CCCeEecCceEEECCCCcEEE
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD------------DDGWLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~------------~~~~~~TGD~~~~d~dG~l~~ 65 (66)
.+.|+++++.+.|.++++|||||.+++ ...||.-+..+...|. ...|.+||=+|++. +|.+|+
T Consensus 513 t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~v 588 (1363)
T KOG3628|consen 513 TLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYV 588 (1363)
T ss_pred EEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEE
Confidence 466788888899999999999999999 9999988877766551 12378999999996 455554
No 124
>KOG3628|consensus
Probab=97.80 E-value=4.8e-05 Score=52.69 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=43.0
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhh-hccc---------CCCCeEecCceEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEAT-KEML---------DDDGWLHTGDLAYRL 58 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~-~~~~---------~~~~~~~TGD~~~~d 58 (66)
+++.|++|++-.+|..|+.||||++++. +.+|++..+.. ...| ....|-||||+|.+.
T Consensus 1162 ~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1162 TDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred ceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeee
Confidence 4688999998899999999999999998 77776542211 1122 123599999999863
No 125
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=97.61 E-value=0.0002 Score=45.09 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.7
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEc
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKG 26 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~ 26 (66)
.+.|+|++++.++++|+.|||++..
T Consensus 261 ~vEIvDp~~~~~vp~Ge~GELvvT~ 285 (445)
T TIGR03335 261 HLDVYDPRHQRFLPDGECGRIVLTT 285 (445)
T ss_pred EEEEEcCCCCCCCcCCCceEEEEEe
Confidence 4678999877889999999999975
No 126
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=96.39 E-value=0.0093 Score=38.19 Aligned_cols=46 Identities=39% Similarity=0.479 Sum_probs=33.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 59 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~ 59 (66)
.+.|+||++++.++.|+.|||++..=. +..+ +---|+|||+.++..
T Consensus 269 ~~Ei~dP~t~e~l~dge~GelV~T~L~-----------~~~~-PlIRYrtgDit~i~~ 314 (438)
T COG1541 269 IFEIVDPETGEQLPDGERGELVITTLT-----------KEGM-PLIRYRTGDITVILS 314 (438)
T ss_pred eeeeecCCcCccCCCCCeeEEEEEecc-----------ccCc-ceEEEEcCCeeEecc
Confidence 367899999999999999999996411 1111 111389999988865
No 127
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=95.24 E-value=0.018 Score=36.03 Aligned_cols=19 Identities=26% Similarity=0.083 Sum_probs=17.5
Q ss_pred eEecCceEEECCCCcEEEC
Q psy4969 48 WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~~ 66 (66)
|++|||++++|++|+|+|+
T Consensus 276 ~~~tgD~g~~d~~G~l~i~ 294 (386)
T TIGR02372 276 RLDLQDRLAWDKDGGFTIL 294 (386)
T ss_pred eeecCceEEEcCCCcEEEe
Confidence 7899999999999999874
No 128
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=93.62 E-value=0.54 Score=29.57 Aligned_cols=45 Identities=33% Similarity=0.386 Sum_probs=31.6
Q ss_pred EEEEcCCCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECCC
Q psy4969 3 RTIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 60 (66)
Q Consensus 3 v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~d 60 (66)
|.|.|+++..+++.|++|-|.+-.+....| .+...|.|+|.+..+
T Consensus 287 V~iRDp~tl~~~~~Ge~Gli~vidl~~~s~-------------p~~IlTeDlGvl~~~ 331 (365)
T PF04443_consen 287 VIIRDPETLEPLPPGETGLIQVIDLANTSY-------------PGFILTEDLGVLHGD 331 (365)
T ss_pred EEEECCCCCcCCCCCCeeEEEEEcccccCC-------------CcEEEEcceeeecCC
Confidence 567799888999999999998876551112 122568888876543
No 129
>PTZ00297 pantothenate kinase; Provisional
Probab=87.89 E-value=1.6 Score=32.27 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=31.0
Q ss_pred CEEEEEcC-CCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECCCCc
Q psy4969 1 MSRTIIDP-VTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62 (66)
Q Consensus 1 ~~v~i~d~-~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~ 62 (66)
++++|.+. +.+. ....|||+++ |+++++.|.+.+ ++|+..|.+-.+|.-..
T Consensus 809 vEvKI~~~~E~~~---~~~~GEIlvr------~~kdpe~T~e~~--~gW~~dG~L~IidRkKd 860 (1452)
T PTZ00297 809 LQVDLEPFDEPSD---GAGIGQLVLA------KKGEPRRTLPIA--AQWKRDRTLRLLGPPLG 860 (1452)
T ss_pred eEEEEcccccccC---CCCCCeEEEE------ECCChHHHHHhh--CcCccCCeEEEEecccc
Confidence 36677653 2111 1235999995 568899888743 68876666665554333
No 130
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=80.53 E-value=1.8 Score=16.34 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=7.1
Q ss_pred EECCCCcEEE
Q psy4969 56 YRLPDGTHFI 65 (66)
Q Consensus 56 ~~d~dG~l~~ 65 (66)
+.|.+|+|||
T Consensus 11 ~~D~~G~lWi 20 (24)
T PF07494_consen 11 YEDSDGNLWI 20 (24)
T ss_dssp EE-TTSCEEE
T ss_pred EEcCCcCEEE
Confidence 4688899886
No 131
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=69.29 E-value=21 Score=21.74 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=7.1
Q ss_pred EEEEcCCCCeeCC
Q psy4969 3 RTIIDPVTSVQLP 15 (66)
Q Consensus 3 v~i~d~~~g~~~~ 15 (66)
.+|+|.+ |++++
T Consensus 109 G~V~D~~-G~Pv~ 120 (256)
T cd03458 109 GTVTDTD-GKPLA 120 (256)
T ss_pred EEEEcCC-CCCCC
Confidence 4566655 66665
No 132
>KOG1178|consensus
Probab=67.71 E-value=11 Score=27.23 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.2
Q ss_pred CCeEecCceEEECCCCcEEE
Q psy4969 46 DGWLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 46 ~~~~~TGD~~~~d~dG~l~~ 65 (66)
+..|+|||.++.-.+|.+.|
T Consensus 453 ~r~y~tgD~gr~l~ng~l~~ 472 (1032)
T KOG1178|consen 453 ARIYRTGDNGRSLKNGGLEI 472 (1032)
T ss_pred hhcccccccceeecCCCEEE
Confidence 34899999998888887765
No 133
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=67.69 E-value=26 Score=21.62 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=5.6
Q ss_pred EEEcCCCCeeCC
Q psy4969 4 TIIDPVTSVQLP 15 (66)
Q Consensus 4 ~i~d~~~g~~~~ 15 (66)
+|+|.+ |++++
T Consensus 130 ~V~D~~-G~PI~ 140 (282)
T cd03460 130 TVTDTD-GKPVP 140 (282)
T ss_pred EEECCC-CCCcC
Confidence 455544 55544
No 134
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=65.47 E-value=28 Score=21.54 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=5.6
Q ss_pred EEEcCCCCeeCC
Q psy4969 4 TIIDPVTSVQLP 15 (66)
Q Consensus 4 ~i~d~~~g~~~~ 15 (66)
+|+|.+ |++++
T Consensus 134 ~V~D~~-G~PI~ 144 (285)
T TIGR02439 134 QVTDAD-GKPIA 144 (285)
T ss_pred EEECCC-CCCcC
Confidence 455544 55544
No 135
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=64.84 E-value=28 Score=21.43 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.8
Q ss_pred EEEEcCCCCeeCCC
Q psy4969 3 RTIIDPVTSVQLPD 16 (66)
Q Consensus 3 v~i~d~~~g~~~~~ 16 (66)
-+|+|.+ |++++.
T Consensus 125 G~V~D~~-G~Pv~g 137 (277)
T cd03461 125 GRVTDTD-GKPLPG 137 (277)
T ss_pred EEEEcCC-CCCcCC
Confidence 3455654 655543
No 136
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.02 E-value=29 Score=20.75 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=16.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCCCccccC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDVFLGYRN 34 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~ 34 (66)
+.+|+|.+ |++|+.-. =|||=.. ..|+++
T Consensus 76 ~G~VlD~~-G~Pv~~A~-VEiWQAd--a~GrY~ 104 (226)
T COG3485 76 EGRVLDGN-GRPVPDAL-VEIWQAD--ADGRYS 104 (226)
T ss_pred EEEEECCC-CCCCCCCE-EEEEEcC--CCCccc
Confidence 45678877 88776432 2555432 445444
No 137
>PF15121 TMEM71: TMEM71 protein family
Probab=61.37 E-value=11 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCeE-ecCceEEECCCCcEEE
Q psy4969 46 DGWL-HTGDLAYRLPDGTHFI 65 (66)
Q Consensus 46 ~~~~-~TGD~~~~d~dG~l~~ 65 (66)
+||| .|-|-...|+||++.+
T Consensus 67 NGYYi~TEDSFl~D~dGNITL 87 (149)
T PF15121_consen 67 NGYYIWTEDSFLCDEDGNITL 87 (149)
T ss_pred CccEEEeccceeecCCCCEee
Confidence 5654 6999999999999865
No 138
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=60.05 E-value=36 Score=20.59 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=5.8
Q ss_pred EEEcCCCCeeCC
Q psy4969 4 TIIDPVTSVQLP 15 (66)
Q Consensus 4 ~i~d~~~g~~~~ 15 (66)
+|+|.+ |++++
T Consensus 104 ~V~D~~-G~Pv~ 114 (246)
T TIGR02465 104 TVRDLS-GTPVA 114 (246)
T ss_pred EEEcCC-CCCcC
Confidence 455544 55554
No 139
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=55.99 E-value=44 Score=20.28 Aligned_cols=10 Identities=20% Similarity=0.056 Sum_probs=5.4
Q ss_pred EECCCCcEEE
Q psy4969 56 YRLPDGTHFI 65 (66)
Q Consensus 56 ~~d~dG~l~~ 65 (66)
.-|++|.+.|
T Consensus 147 ~Td~~G~y~F 156 (247)
T cd03462 147 RTDEDGRYEV 156 (247)
T ss_pred EeCCCCCEEE
Confidence 3356666554
No 140
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=55.03 E-value=6.9 Score=21.14 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=8.2
Q ss_pred EECCCCcEEE
Q psy4969 56 YRLPDGTHFI 65 (66)
Q Consensus 56 ~~d~dG~l~~ 65 (66)
+.|+||+||+
T Consensus 93 ~KDeDGFLYi 102 (121)
T PTZ00380 93 CKRDDGFLYV 102 (121)
T ss_pred hcCCCCeEEE
Confidence 5688999987
No 141
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=54.87 E-value=18 Score=17.09 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=5.3
Q ss_pred EEEcCCCCeeCCCC
Q psy4969 4 TIIDPVTSVQLPDG 17 (66)
Q Consensus 4 ~i~d~~~g~~~~~~ 17 (66)
.|.+.+ |+++|-|
T Consensus 2 ~l~~~~-G~~lPfG 14 (68)
T PF13953_consen 2 TLRDAD-GKPLPFG 14 (68)
T ss_dssp EEEETT-SEE--TT
T ss_pred EEEcCC-CCcCCCC
Confidence 344444 6665544
No 142
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=52.21 E-value=19 Score=15.58 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=11.7
Q ss_pred CeeCCCCCceEEEEE
Q psy4969 11 SVQLPDGKTGELCLK 25 (66)
Q Consensus 11 g~~~~~~~~Gel~i~ 25 (66)
.++++||+.|.|-+.
T Consensus 30 ~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 30 KKPIAPGESGKIKVT 44 (45)
T ss_pred cceECCCCEEEEEEE
Confidence 467889999988764
No 143
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=51.77 E-value=9.5 Score=19.95 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=7.0
Q ss_pred EECCCCcEEE
Q psy4969 56 YRLPDGTHFI 65 (66)
Q Consensus 56 ~~d~dG~l~~ 65 (66)
+.|+||+||+
T Consensus 86 ~kdeDGFLY~ 95 (104)
T PF02991_consen 86 YKDEDGFLYM 95 (104)
T ss_dssp HB-TTSSEEE
T ss_pred hCCCCCeEEE
Confidence 3578999987
No 144
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=50.21 E-value=15 Score=19.45 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=10.7
Q ss_pred EEEEEcCCCCeeCC
Q psy4969 2 SRTIIDPVTSVQLP 15 (66)
Q Consensus 2 ~v~i~d~~~g~~~~ 15 (66)
+|.|+|+.+|++++
T Consensus 87 ~V~IVDe~TGR~m~ 100 (113)
T PF01043_consen 87 EVVIVDEFTGRIMP 100 (113)
T ss_dssp EEEEBCTTTTSEBT
T ss_pred EEEEEECCCCCcCC
Confidence 57888888787765
No 145
>PF05452 Clavanin: Clavanin; InterPro: IPR008453 This family consists of clavanin proteins from the haemocytes of the invertebrate Styela clava (Sea squirt), a solitary tunicate. The family is made up of four alpha-helical antimicrobial peptides, clavanins A, B, C and D. The tunicate peptides resemble magainins in size, primary sequence and antibacterial activity. Synthetic clavanin A displays comparable antimicrobial activity to magainins and cecropins. The presence of alpha-helical antimicrobial peptides in the haemocytes of a urochordate suggests that such peptides are primeval effectors of innate immunity in the vertebrate lineage [].; GO: 0005576 extracellular region
Probab=50.21 E-value=9.1 Score=18.66 Aligned_cols=7 Identities=57% Similarity=1.284 Sum_probs=6.0
Q ss_pred CeEecCc
Q psy4969 47 GWLHTGD 53 (66)
Q Consensus 47 ~~~~TGD 53 (66)
-||.|||
T Consensus 73 hwydtgd 79 (80)
T PF05452_consen 73 HWYDTGD 79 (80)
T ss_pred ccccCCC
Confidence 4999998
No 146
>KOG3050|consensus
Probab=49.48 E-value=4.8 Score=24.55 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=12.8
Q ss_pred CchhhhcccCCC----CeEecCceE
Q psy4969 35 KVEATKEMLDDD----GWLHTGDLA 55 (66)
Q Consensus 35 ~~~~~~~~~~~~----~~~~TGD~~ 55 (66)
..++.++.| ++ |||.||+-.
T Consensus 79 k~eqykqVF-pdl~vlGwYttG~d~ 102 (299)
T KOG3050|consen 79 KEEQYKQVF-PDLYVLGWYTTGSDP 102 (299)
T ss_pred HHHHHHHhc-ccceEEEEeecCCCC
Confidence 344555556 43 799999754
No 147
>PF09956 DUF2190: Uncharacterized conserved protein (DUF2190); InterPro: IPR011231 This entry is represented by Bacteriophage VT1-Sakai, H0018. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised conserved proteins.
Probab=48.20 E-value=39 Score=17.71 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=19.7
Q ss_pred CCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECCC
Q psy4969 14 LPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 60 (66)
Q Consensus 14 ~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~d 60 (66)
.+.|+.|++.+.|- |.-|...... |.-|+..|+|.+
T Consensus 38 ~~~Ge~g~~~~~GV-----f~lpk~~~~a------~a~G~~vY~d~~ 73 (106)
T PF09956_consen 38 AAAGETGELHTEGV-----FELPKAAADA------IAVGAKVYWDAT 73 (106)
T ss_pred cCCCCeEEEEEEEE-----EEeecccccc------ccCCCEEEEECC
Confidence 45677777777653 3333322222 356777777655
No 148
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.10 E-value=26 Score=18.05 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=9.0
Q ss_pred eEecCceEEE-----CCCCcEEE
Q psy4969 48 WLHTGDLAYR-----LPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~-----d~dG~l~~ 65 (66)
|.+||-.++. |+||.+|+
T Consensus 17 YvnTgTvgrV~dIkkdEdG~~WV 39 (97)
T COG4014 17 YVNTGTVGRVVDIKKDEDGDIWV 39 (97)
T ss_pred EeecCceeeEEEEEeecCCceEE
Confidence 3445554443 55666554
No 149
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=46.55 E-value=54 Score=18.54 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.8
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
..++||+..-|+||-+.+
T Consensus 137 ~V~PGD~IvaD~DGVvVi 154 (161)
T TIGR02998 137 TFFPDDYIYADNTGIILS 154 (161)
T ss_pred EECCCCEEEEcCCcEEEE
Confidence 689999999999998764
No 150
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=44.75 E-value=12 Score=18.35 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=8.1
Q ss_pred EECCCCcEEE
Q psy4969 56 YRLPDGTHFI 65 (66)
Q Consensus 56 ~~d~dG~l~~ 65 (66)
.+|++|++||
T Consensus 42 wiDe~G~vYi 51 (76)
T PF06970_consen 42 WIDENGNVYI 51 (76)
T ss_pred cCCCCCCEEE
Confidence 4689998887
No 151
>PF10102 DUF2341: Domain of unknown function (DUF2341); InterPro: IPR018765 This domain of unknown function is found in various bacterial proteins, including MotA/TolQ/ExbB proton channels and other transport proteins.
Probab=43.99 E-value=44 Score=16.84 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=23.2
Q ss_pred EEEEEcCCCCeeCC--------CCCceEEEEEcCC-------CccccCCchhh
Q psy4969 2 SRTIIDPVTSVQLP--------DGKTGELCLKGDV-------FLGYRNKVEAT 39 (66)
Q Consensus 2 ~v~i~d~~~g~~~~--------~~~~Gel~i~~~~-------~~gY~~~~~~~ 39 (66)
+|+++|.+ +.+++ ..+...|||+-|. ..=|+.++.+.
T Consensus 5 DIRf~d~~-~~~L~ywIE~wd~~~~~A~iWVkvp~i~~~~~~i~lyyGn~~a~ 56 (89)
T PF10102_consen 5 DIRFYDSD-GTPLPYWIESWDPTNEQALIWVKVPSIPAGSTTIYLYYGNPSAT 56 (89)
T ss_pred cEEEEeCC-CCEeEEEEEECCCCCCeEEEEEECCCCCCCCcEEEEEECCCCCc
Confidence 46777765 66553 3456889999764 23467666544
No 152
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=42.84 E-value=11 Score=18.81 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.0
Q ss_pred CCeEecCceEEECCC
Q psy4969 46 DGWLHTGDLAYRLPD 60 (66)
Q Consensus 46 ~~~~~TGD~~~~d~d 60 (66)
-||+.|||.+++...
T Consensus 40 vGYllSGDPaYItsh 54 (79)
T PF06135_consen 40 VGYLLSGDPAYITSH 54 (79)
T ss_pred HhheecCCCccccCc
Confidence 368999999998654
No 153
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=41.79 E-value=26 Score=15.99 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=8.0
Q ss_pred cCceEEECCCCcEEE
Q psy4969 51 TGDLAYRLPDGTHFI 65 (66)
Q Consensus 51 TGD~~~~d~dG~l~~ 65 (66)
-|.+.|.++||.+.|
T Consensus 32 ~~~i~Y~~~dg~yli 46 (57)
T PF10411_consen 32 GGGILYVDEDGRYLI 46 (57)
T ss_dssp TTEEEEEETTSSEEE
T ss_pred CCeEEEEcCCCCEEE
Confidence 345555666665443
No 154
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=41.05 E-value=25 Score=14.67 Aligned_cols=9 Identities=11% Similarity=0.361 Sum_probs=7.3
Q ss_pred ECCCCcEEE
Q psy4969 57 RLPDGTHFI 65 (66)
Q Consensus 57 ~d~dG~l~~ 65 (66)
.|.+|++|+
T Consensus 20 vD~~GNiYv 28 (38)
T PF06739_consen 20 VDSNGNIYV 28 (38)
T ss_pred ECCCCCEEE
Confidence 588898886
No 155
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=40.33 E-value=35 Score=18.09 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=13.1
Q ss_pred EecCceEEECCCCcEEE
Q psy4969 49 LHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 49 ~~TGD~~~~d~dG~l~~ 65 (66)
+..||++++-+.+.|.|
T Consensus 60 ~~~GDi~Yw~pg~~l~i 76 (120)
T PF04126_consen 60 VEAGDIAYWPPGGALAI 76 (120)
T ss_dssp B-TTEEEEECCCTEEEE
T ss_pred ccCceEEEeCCCCEEEE
Confidence 57899999987777765
No 156
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=38.28 E-value=36 Score=14.13 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=10.8
Q ss_pred CCCeEecCceEEECCCCcEE
Q psy4969 45 DDGWLHTGDLAYRLPDGTHF 64 (66)
Q Consensus 45 ~~~~~~TGD~~~~d~dG~l~ 64 (66)
...-|..||++.. +|.+|
T Consensus 6 ~~~~Y~~Gd~V~~--~g~~y 23 (41)
T PF02839_consen 6 PGTTYNAGDRVSY--NGKLY 23 (41)
T ss_dssp TTCEE-TT-EEEE--TTEEE
T ss_pred CCCEEcCCCEEEE--CCCEE
Confidence 3446889999986 46665
No 157
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=38.20 E-value=22 Score=17.71 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=12.0
Q ss_pred CCCeEecCceEEEC
Q psy4969 45 DDGWLHTGDLAYRL 58 (66)
Q Consensus 45 ~~~~~~TGD~~~~d 58 (66)
.+|+|.+||-|.++
T Consensus 38 mdGYy~agngG~i~ 51 (80)
T PF12433_consen 38 MDGYYAAGNGGWID 51 (80)
T ss_pred CCceEEcCCCceee
Confidence 47899999999876
No 158
>PRK06201 hypothetical protein; Validated
Probab=37.86 E-value=87 Score=18.46 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.9
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
..+.||+..-|.||-+.+
T Consensus 159 ~V~PGD~I~aD~dGVvvi 176 (221)
T PRK06201 159 VIEPGDLIVGDDDGLVAV 176 (221)
T ss_pred EEcCCCEEEEcCCceEEE
Confidence 678999999999998865
No 159
>KOG4826|consensus
Probab=37.21 E-value=20 Score=21.42 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=26.8
Q ss_pred ceEEEE--EcCC-CccccCCchhhhcccCCCCe--EecCceEEECCCCcE
Q psy4969 19 TGELCL--KGDV-FLGYRNKVEATKEMLDDDGW--LHTGDLAYRLPDGTH 63 (66)
Q Consensus 19 ~Gel~i--~~~~-~~gY~~~~~~~~~~~~~~~~--~~TGD~~~~d~dG~l 63 (66)
.|-|++ .|+. +..|.++++..+... ..+| |..||.-+.+-|..+
T Consensus 66 sGlih~v~egyfv~~p~~~~~~~~s~~L-~~~WKeYsk~D~RYv~~d~~v 114 (229)
T KOG4826|consen 66 SGLIHLVLEGYFVFRPETNLPANSSALL-AQLWKEYSKGDSRYVLTDDVV 114 (229)
T ss_pred hCeeeeEEEeeEEeeecccCCccHHHHH-HHHHHHhcccceeEeccCCcE
Confidence 355544 4666 777777777533322 3444 778888877766543
No 160
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=36.56 E-value=1.1e+02 Score=19.07 Aligned_cols=8 Identities=25% Similarity=0.185 Sum_probs=4.2
Q ss_pred CCCCcEEE
Q psy4969 58 LPDGTHFI 65 (66)
Q Consensus 58 d~dG~l~~ 65 (66)
|++|.+.|
T Consensus 182 DadG~y~F 189 (281)
T TIGR02438 182 DDEGRFEI 189 (281)
T ss_pred CCCCCEEE
Confidence 55565544
No 161
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=34.70 E-value=34 Score=16.94 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.1
Q ss_pred EEEEEcCCCCeeCCC
Q psy4969 2 SRTIIDPVTSVQLPD 16 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~ 16 (66)
.+.+.|.+ |++++-
T Consensus 23 ~v~v~D~~-Gnpv~~ 36 (92)
T smart00634 23 TATVTDAN-GNPVAG 36 (92)
T ss_pred EEEEECCC-CCCcCC
Confidence 57788977 888875
No 162
>KOG1654|consensus
Probab=34.58 E-value=23 Score=18.98 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=7.2
Q ss_pred ECCCCcEEEC
Q psy4969 57 RLPDGTHFIW 66 (66)
Q Consensus 57 ~d~dG~l~~~ 66 (66)
.|+||+||++
T Consensus 99 kdeDgFLYm~ 108 (116)
T KOG1654|consen 99 KDEDGFLYMT 108 (116)
T ss_pred cccCcEEEEE
Confidence 4788888863
No 163
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=34.05 E-value=99 Score=18.83 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=16.2
Q ss_pred CCCCceEEEEEc-CC-CccccCCc
Q psy4969 15 PDGKTGELCLKG-DV-FLGYRNKV 36 (66)
Q Consensus 15 ~~~~~Gel~i~~-~~-~~gY~~~~ 36 (66)
.+|...|||++- |. ..||.-.+
T Consensus 171 ~pgivAElC~SDDP~YtTGYVA~~ 194 (242)
T PRK01322 171 HPGVIAELCWSDDPDYTTGYVATK 194 (242)
T ss_pred CCCeEEEEEecCCCCCeeEEEEeC
Confidence 578889999984 55 77887443
No 164
>PRK03955 hypothetical protein; Reviewed
Probab=33.88 E-value=49 Score=18.12 Aligned_cols=18 Identities=28% Similarity=0.184 Sum_probs=14.4
Q ss_pred eEecCceEEEC-CCCcEEE
Q psy4969 48 WLHTGDLAYRL-PDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d-~dG~l~~ 65 (66)
.+.+||..++| .+|.+.+
T Consensus 110 ~l~~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 110 KLKDGDRVVVDGDEGEVEI 128 (131)
T ss_pred ecCCCCEEEEeCCCCEEEE
Confidence 57899999999 4587765
No 165
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.54 E-value=1.1e+02 Score=17.68 Aligned_cols=9 Identities=22% Similarity=0.198 Sum_probs=5.2
Q ss_pred ECCCCcEEE
Q psy4969 57 RLPDGTHFI 65 (66)
Q Consensus 57 ~d~dG~l~~ 65 (66)
-|++|.+.|
T Consensus 89 TD~~G~y~F 97 (185)
T cd03463 89 TDADGRFSF 97 (185)
T ss_pred ECCCCCEEE
Confidence 366666554
No 166
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=31.28 E-value=1.1e+02 Score=17.58 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=10.7
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEE
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLK 25 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~ 25 (66)
..+|+|.+ +++++- ..=|||=.
T Consensus 33 ~G~V~D~~-g~Pv~~-A~veiWqa 54 (183)
T PF00775_consen 33 HGRVIDTD-GKPVPG-ALVEIWQA 54 (183)
T ss_dssp EEEEEETT-SSB-TT-EEEEEEE-
T ss_pred EEEEECCC-CCCCCC-cEEEEEec
Confidence 34677765 776643 22345543
No 167
>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving
Probab=31.16 E-value=43 Score=18.75 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=23.2
Q ss_pred CceEEEEEcCC-CccccCCchhh--hcccCCCCeEecCceEEE
Q psy4969 18 KTGELCLKGDV-FLGYRNKVEAT--KEMLDDDGWLHTGDLAYR 57 (66)
Q Consensus 18 ~~Gel~i~~~~-~~gY~~~~~~~--~~~~~~~~~~~TGD~~~~ 57 (66)
..+.+.+.+.. ..-..+-|--. .++++...||.|.|++.|
T Consensus 39 R~~~v~v~~~~y~a~LvdLPtiiEs~KT~D~k~~yKtaDI~QM 81 (162)
T cd08047 39 RRAVVRINGQKYPAKLVDLPTIIESHKTLDKKNLYKTADISQM 81 (162)
T ss_pred cEEEEEECCEEcceEEeecCceeeeeeccccCceEEecChhhE
Confidence 44666666544 33344444322 234445669999999876
No 168
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=29.64 E-value=60 Score=17.85 Aligned_cols=17 Identities=41% Similarity=0.479 Sum_probs=14.5
Q ss_pred EecCceEEECCCCcEEE
Q psy4969 49 LHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 49 ~~TGD~~~~d~dG~l~~ 65 (66)
+.|||..+++.+|.+.+
T Consensus 113 l~~g~~v~v~~~G~ve~ 129 (131)
T COG1786 113 LKTGDRVRVNPEGEVEI 129 (131)
T ss_pred hccCCEEEEcCCceEEe
Confidence 68999999998888765
No 169
>PF14903 WG_beta_rep: WG containing repeat
Probab=29.36 E-value=47 Score=12.83 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=5.8
Q ss_pred EEECCCCcEE
Q psy4969 55 AYRLPDGTHF 64 (66)
Q Consensus 55 ~~~d~dG~l~ 64 (66)
|.+|.+|.+.
T Consensus 2 G~id~~G~~v 11 (35)
T PF14903_consen 2 GYIDKNGKIV 11 (35)
T ss_pred EEEeCCCCEE
Confidence 4566666654
No 170
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=29.03 E-value=35 Score=20.51 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=5.4
Q ss_pred EECCCCcEEEC
Q psy4969 56 YRLPDGTHFIW 66 (66)
Q Consensus 56 ~~d~dG~l~~~ 66 (66)
.+|++|+|||+
T Consensus 228 a~d~~G~LYIv 238 (248)
T PF06977_consen 228 AFDPDGNLYIV 238 (248)
T ss_dssp EE-TT--EEEE
T ss_pred EECCCCCEEEE
Confidence 46777887774
No 171
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=28.84 E-value=1.2e+02 Score=18.62 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=15.7
Q ss_pred CeeCCCCCceEEEEEcCC-Ccccc
Q psy4969 11 SVQLPDGKTGELCLKGDV-FLGYR 33 (66)
Q Consensus 11 g~~~~~~~~Gel~i~~~~-~~gY~ 33 (66)
+...|+|..+++.+.+.. ...|.
T Consensus 272 ~~l~p~Gm~a~V~i~~~~~~~~~~ 295 (310)
T PRK10559 272 GNLYPAGTTATVVITGKQDRDASQ 295 (310)
T ss_pred cccccCCCEEEEEEEcCCCCcccc
Confidence 555667888888887765 44454
No 172
>KOG1556|consensus
Probab=28.59 E-value=24 Score=21.72 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=8.2
Q ss_pred CCeEecCceEE
Q psy4969 46 DGWLHTGDLAY 56 (66)
Q Consensus 46 ~~~~~TGD~~~ 56 (66)
-|||+||=.-+
T Consensus 93 vGWYhTGPkl~ 103 (309)
T KOG1556|consen 93 VGWYHTGPKLR 103 (309)
T ss_pred eeeeccCCccc
Confidence 37999996544
No 173
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=28.03 E-value=40 Score=17.83 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=7.1
Q ss_pred EECCCCcEEE
Q psy4969 56 YRLPDGTHFI 65 (66)
Q Consensus 56 ~~d~dG~l~~ 65 (66)
+.|+||+||+
T Consensus 94 ~kd~DGfLyl 103 (112)
T cd01611 94 HKDEDGFLYM 103 (112)
T ss_pred hCCCCCEEEE
Confidence 3467888886
No 174
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=27.47 E-value=38 Score=21.99 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=17.0
Q ss_pred CccccCCchhhhcccCCCCe
Q psy4969 29 FLGYRNKVEATKEMLDDDGW 48 (66)
Q Consensus 29 ~~gY~~~~~~~~~~~~~~~~ 48 (66)
++.||.+|..++..|...+|
T Consensus 164 ~~~~~~~P~~~R~~f~~kgw 183 (397)
T COG2046 164 FPKYWLTPAETREVFKEKGW 183 (397)
T ss_pred chhhccCHHHHHHHHHhcCC
Confidence 77999999999888866677
No 175
>PF04658 TAFII55_N: TAFII55 protein conserved region; InterPro: IPR006751 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits its acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminal of the protein [].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005669 transcription factor TFIID complex
Probab=27.04 E-value=69 Score=18.08 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=20.9
Q ss_pred CceEEEEEcCC-CccccCCchhh--hcccCCCCeEecCceEEE
Q psy4969 18 KTGELCLKGDV-FLGYRNKVEAT--KEMLDDDGWLHTGDLAYR 57 (66)
Q Consensus 18 ~~Gel~i~~~~-~~gY~~~~~~~--~~~~~~~~~~~TGD~~~~ 57 (66)
..|.+.+.+.. ..-..+-|--. .+.+....||.|+|++.|
T Consensus 41 R~~~v~i~~~~y~a~LvDLP~IvEs~KT~D~k~~yKtaDI~QM 83 (162)
T PF04658_consen 41 RRAVVRIGGQIYSAKLVDLPCIVESHKTLDKKNFYKTADISQM 83 (162)
T ss_pred CEEEEEECCEEcceEEeecCceeeEEeecccCeEEEEecccee
Confidence 34555555433 22233333222 123444569999999876
No 176
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=27.03 E-value=69 Score=17.13 Aligned_cols=26 Identities=19% Similarity=0.563 Sum_probs=15.5
Q ss_pred EEEEEcCCCCeeCC----CCC--ceEEEEEcC
Q psy4969 2 SRTIIDPVTSVQLP----DGK--TGELCLKGD 27 (66)
Q Consensus 2 ~v~i~d~~~g~~~~----~~~--~Gel~i~~~ 27 (66)
+|.|+|-+.|+... +|+ .|+|++.|.
T Consensus 42 ~V~I~Nv~NG~Rf~TYvI~g~~gSg~I~lNGA 73 (111)
T cd06919 42 KVLVVNVNNGARFETYVIPGERGSGVICLNGA 73 (111)
T ss_pred EEEEEECCCCcEEEEEEEEcCCCCCEEEeCCH
Confidence 46677766565432 233 478888764
No 177
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=26.28 E-value=73 Score=14.03 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=12.7
Q ss_pred EecCceEEECCCCcEEEC
Q psy4969 49 LHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 49 ~~TGD~~~~d~dG~l~~~ 66 (66)
-..|-..+.++||..+.|
T Consensus 26 ~v~GsY~y~~pdG~~~~V 43 (52)
T PF00379_consen 26 VVRGSYSYIDPDGQTRTV 43 (52)
T ss_pred EEEEEEEEECCCCCEEEE
Confidence 456777788888876643
No 178
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=26.03 E-value=85 Score=14.69 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=15.7
Q ss_pred CCCeEecCceEEECCCCcEEE
Q psy4969 45 DDGWLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 45 ~~~~~~TGD~~~~d~dG~l~~ 65 (66)
.|-|+..||.-.+...+.+++
T Consensus 36 ~D~~L~~G~~l~l~~g~~vvl 56 (63)
T PF11142_consen 36 DDYWLQAGDSLRLRRGGRVVL 56 (63)
T ss_pred CCEEECCCCEEEeCCCCEEEE
Confidence 345788899888877777665
No 179
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=25.99 E-value=90 Score=18.49 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=18.3
Q ss_pred EEEcCCCCeeCCCCCceEEEEEcCC-Cc
Q psy4969 4 TIIDPVTSVQLPDGKTGELCLKGDV-FL 30 (66)
Q Consensus 4 ~i~d~~~g~~~~~~~~Gel~i~~~~-~~ 30 (66)
.+.|+. |+++... .|++++.-|. +.
T Consensus 25 ~v~d~~-g~~~q~s-sG~~~l~RP~kFr 50 (210)
T TIGR03009 25 TRTDSV-AAPATTY-SGAILYMKPDFAV 50 (210)
T ss_pred EEECCC-CcEEEee-eEEEEEeCCCeEE
Confidence 355766 7777665 4999999888 64
No 180
>PRK03760 hypothetical protein; Provisional
Probab=25.42 E-value=71 Score=16.96 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=11.9
Q ss_pred ecCceEEECCCCcEE
Q psy4969 50 HTGDLAYRLPDGTHF 64 (66)
Q Consensus 50 ~TGD~~~~d~dG~l~ 64 (66)
..=|+.++|++|.+.
T Consensus 59 ~pLDiiFld~~g~Vv 73 (117)
T PRK03760 59 SSIDVIFLDSNRRVV 73 (117)
T ss_pred CeeEEEEECCCCeEE
Confidence 367999999998764
No 181
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=25.33 E-value=1e+02 Score=17.29 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.7
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
..+.||+..-|.||-+.+
T Consensus 137 ~V~PGD~I~aD~dGVvvi 154 (159)
T PRK09372 137 TFFPGDYLYADNDGIIVS 154 (159)
T ss_pred EECCCCEEEEcCCCEEEE
Confidence 678999999999998765
No 182
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=25.30 E-value=75 Score=17.37 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=16.2
Q ss_pred EEEEEcCCCCeeCC----CCC--ceEEEEEcC
Q psy4969 2 SRTIIDPVTSVQLP----DGK--TGELCLKGD 27 (66)
Q Consensus 2 ~v~i~d~~~g~~~~----~~~--~Gel~i~~~ 27 (66)
+|.|+|-+.|+... +|+ .|.|++.|+
T Consensus 43 ~V~V~Nv~NG~Rf~TYvI~G~~GSg~I~lNGA 74 (126)
T TIGR00223 43 KVDIVNVNNGKRFSTYAIAGKRGSRIICVNGA 74 (126)
T ss_pred EEEEEECCCCcEEEEEEEEcCCCCCEEEeCCH
Confidence 46777766675432 343 477888874
No 183
>PRK01546 hypothetical protein; Provisional
Probab=24.69 E-value=43 Score=16.79 Aligned_cols=14 Identities=0% Similarity=0.169 Sum_probs=9.4
Q ss_pred EEEEEcCCCCeeCCC
Q psy4969 2 SRTIIDPVTSVQLPD 16 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~ 16 (66)
.++|+|++ |..+.|
T Consensus 51 ~i~vvD~~-G~dVTP 64 (79)
T PRK01546 51 GIKVVNEQ-GTDVTP 64 (79)
T ss_pred cceEECCC-CCCCCH
Confidence 36788887 765544
No 184
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=24.45 E-value=76 Score=16.41 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=10.4
Q ss_pred EecCceEEECCCCcEE
Q psy4969 49 LHTGDLAYRLPDGTHF 64 (66)
Q Consensus 49 ~~TGD~~~~d~dG~l~ 64 (66)
...=|++++|++|.+.
T Consensus 47 ~~pLDi~fld~~g~Vv 62 (108)
T PF02643_consen 47 RFPLDIAFLDSDGRVV 62 (108)
T ss_dssp -S-EEEEEE-TTSBEE
T ss_pred ceeEEEEEECCCCeEE
Confidence 3467899999998864
No 185
>COG5475 Uncharacterized small protein [Function unknown]
Probab=24.32 E-value=78 Score=14.88 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=9.2
Q ss_pred EecCceEEECCCC
Q psy4969 49 LHTGDLAYRLPDG 61 (66)
Q Consensus 49 ~~TGD~~~~d~dG 61 (66)
|.|||....-+.|
T Consensus 5 FstgdvV~lKsGG 17 (60)
T COG5475 5 FSTGDVVTLKSGG 17 (60)
T ss_pred eecCcEEEeecCC
Confidence 6888888775443
No 186
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=24.14 E-value=59 Score=14.88 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=6.8
Q ss_pred EecCceEEECC
Q psy4969 49 LHTGDLAYRLP 59 (66)
Q Consensus 49 ~~TGD~~~~d~ 59 (66)
|.+||+..+-.
T Consensus 1 f~~GDvV~LKS 11 (53)
T PF09926_consen 1 FKIGDVVQLKS 11 (53)
T ss_pred CCCCCEEEEcc
Confidence 45677776643
No 187
>PF08460 SH3_5: Bacterial SH3 domain; InterPro: IPR013667 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; GO: 0016787 hydrolase activity; PDB: 1R77_B.
Probab=24.06 E-value=83 Score=14.85 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=9.5
Q ss_pred eEecCceEEEC----CCCcEEE
Q psy4969 48 WLHTGDLAYRL----PDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d----~dG~l~~ 65 (66)
+|.-|+....| .||+.||
T Consensus 30 ~~~~G~~V~YD~~~~~dGy~Wi 51 (65)
T PF08460_consen 30 TYPKGQSVNYDQVIKADGYVWI 51 (65)
T ss_dssp EE-TT-EEEEEEEEEETTEEEE
T ss_pred EECCCCEEEEEEEEEeCCEEEE
Confidence 45556555443 5777765
No 188
>PRK05473 hypothetical protein; Provisional
Probab=23.75 E-value=28 Score=17.73 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=11.4
Q ss_pred CeEecCceEEECCC
Q psy4969 47 GWLHTGDLAYRLPD 60 (66)
Q Consensus 47 ~~~~TGD~~~~d~d 60 (66)
||+.+||-+++...
T Consensus 44 GYllSGDPaYItsh 57 (86)
T PRK05473 44 GYLLSGDPAYIPRH 57 (86)
T ss_pred hhhccCCCCccCCc
Confidence 68899999998653
No 189
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=23.71 E-value=62 Score=12.28 Aligned_cols=7 Identities=29% Similarity=0.866 Sum_probs=3.9
Q ss_pred CCCcEEE
Q psy4969 59 PDGTHFI 65 (66)
Q Consensus 59 ~dG~l~~ 65 (66)
++|.|++
T Consensus 11 ~~g~i~V 17 (28)
T PF01436_consen 11 SDGNIYV 17 (28)
T ss_dssp TTSEEEE
T ss_pred CCCCEEE
Confidence 5565554
No 190
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=23.56 E-value=1.3e+02 Score=16.23 Aligned_cols=27 Identities=19% Similarity=0.537 Sum_probs=13.8
Q ss_pred EEEEEcCCCCeeCC----CCC--ceEEEEEcCC
Q psy4969 2 SRTIIDPVTSVQLP----DGK--TGELCLKGDV 28 (66)
Q Consensus 2 ~v~i~d~~~g~~~~----~~~--~Gel~i~~~~ 28 (66)
+|.|+|-++|.... +|+ .|+|++.|+.
T Consensus 43 ~V~V~Nv~nG~Rf~TYvI~g~~GSg~I~lNGaA 75 (116)
T PF02261_consen 43 QVQVVNVNNGERFETYVIPGERGSGVICLNGAA 75 (116)
T ss_dssp EEEEEETTT--EEEEEEEEESTTTT-EEEEGGG
T ss_pred EEEEEECCCCcEEEEEEEEccCCCcEEEECCHH
Confidence 46677766665432 233 3788888754
No 191
>PRK02539 hypothetical protein; Provisional
Probab=23.38 E-value=52 Score=16.73 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=9.7
Q ss_pred EEEEEcCCCCeeCCC
Q psy4969 2 SRTIIDPVTSVQLPD 16 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~ 16 (66)
.++|+|++ |..+.|
T Consensus 50 ~i~ivD~~-G~dVTP 63 (85)
T PRK02539 50 GIKIVDEE-GNDVTP 63 (85)
T ss_pred cceEECCC-CCCCCH
Confidence 36788887 776654
No 192
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.12 E-value=61 Score=17.75 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=5.1
Q ss_pred ECCCCcEEE
Q psy4969 57 RLPDGTHFI 65 (66)
Q Consensus 57 ~d~dG~l~~ 65 (66)
+.++|.+|+
T Consensus 71 L~d~G~IWv 79 (127)
T PF11253_consen 71 LADDGVIWV 79 (127)
T ss_pred hcCCCEEEE
Confidence 345666665
No 193
>KOG4195|consensus
Probab=21.80 E-value=73 Score=19.40 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=18.2
Q ss_pred CccccCCchhhhcccCCCCeEecCceEEECCCCc
Q psy4969 29 FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62 (66)
Q Consensus 29 ~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~ 62 (66)
..||.+++..| .+.|.-|--+-+-|++|.
T Consensus 201 YkGYvDDpRNT-----DNaWmET~avn~hde~g~ 229 (275)
T KOG4195|consen 201 YKGYVDDPRNT-----DNAWMETVAVNFHDEDGN 229 (275)
T ss_pred eeeecCCCCcc-----cccceeEEEEeeeccccc
Confidence 55777777655 344666666666666664
No 194
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=21.67 E-value=91 Score=16.96 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=12.0
Q ss_pred ecCceEEECCCCcEE
Q psy4969 50 HTGDLAYRLPDGTHF 64 (66)
Q Consensus 50 ~TGD~~~~d~dG~l~ 64 (66)
..=|+.++|+||.+.
T Consensus 62 lpLDiiFid~dg~i~ 76 (126)
T COG1430 62 LPLDIIFIDSDGRVV 76 (126)
T ss_pred cceEEEEEcCCCCEE
Confidence 347999999999864
No 195
>PRK01631 hypothetical protein; Provisional
Probab=20.70 E-value=62 Score=16.11 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=9.0
Q ss_pred EEEEcCCCCeeCCC
Q psy4969 3 RTIIDPVTSVQLPD 16 (66)
Q Consensus 3 v~i~d~~~g~~~~~ 16 (66)
++|+|++ |+.+.|
T Consensus 50 i~ivD~~-G~dvTP 62 (76)
T PRK01631 50 TKIVDQN-GLNVTP 62 (76)
T ss_pred ceeECCC-CCcCCH
Confidence 6788887 765544
No 196
>PRK09262 hypothetical protein; Provisional
Probab=20.57 E-value=1.2e+02 Score=18.07 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.6
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
-.++||+..-|.||-+.+
T Consensus 157 ~V~PGD~IvaD~dGVvvI 174 (225)
T PRK09262 157 LVNPGDVVVADDDGVVVV 174 (225)
T ss_pred EECCCCEEEEECCcEEEE
Confidence 578999999999998765
No 197
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=20.53 E-value=1.4e+02 Score=16.98 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.3
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
-.+.||+..-|+||-+.+
T Consensus 137 ~V~PGDiI~aD~dGVvvi 154 (163)
T PRK12487 137 IIEPGDMLYADENGIAVS 154 (163)
T ss_pred EECCCCEEEEcCCCEEEE
Confidence 478999999999998765
No 198
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=20.48 E-value=1.1e+02 Score=15.74 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=10.9
Q ss_pred ecCceEEECCCCcEE
Q psy4969 50 HTGDLAYRLPDGTHF 64 (66)
Q Consensus 50 ~TGD~~~~d~dG~l~ 64 (66)
.|+..+.+|.+|.+.
T Consensus 59 ~T~~~Vi~d~~G~Fv 73 (92)
T PF11429_consen 59 KTNNVVIIDKDGNFV 73 (92)
T ss_dssp TTTEEEEE-TTS-EE
T ss_pred CCCeEEEEcCCCCEE
Confidence 589999999999864
No 199
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=20.35 E-value=1.2e+02 Score=17.95 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.6
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
-.+.||+..-|.||-+.+
T Consensus 155 ~V~PGD~i~aD~dGVvvi 172 (222)
T TIGR02798 155 LVNPGDVVVADDDGVVVV 172 (222)
T ss_pred EECCCCEEEEcCCcEEEE
Confidence 578999999999998765
Done!