Query psy4969
Match_columns 66
No_of_seqs 223 out of 1875
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 22:29:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5a_A Long-chain-fatty-acid-- 99.9 7.2E-22 2.5E-26 120.6 6.7 65 1-66 402-478 (480)
2 4fuq_A Malonyl COA synthetase; 99.8 3.7E-21 1.3E-25 118.9 8.0 66 1-66 329-395 (503)
3 3ni2_A 4-coumarate:COA ligase; 99.8 5.8E-21 2E-25 118.6 7.3 66 1-66 364-430 (536)
4 1mdb_A 2,3-dihydroxybenzoate-A 99.8 7.4E-21 2.5E-25 118.3 7.3 64 2-66 362-426 (539)
5 3rix_A Luciferase, luciferin 4 99.8 9.3E-21 3.2E-25 118.0 7.7 66 1-66 369-435 (550)
6 3o83_A Peptide arylation enzym 99.8 1.3E-20 4.4E-25 117.4 7.3 65 1-66 370-435 (544)
7 2d1s_A Luciferase, luciferin 4 99.8 2.1E-20 7.2E-25 116.5 7.3 66 1-66 371-437 (548)
8 4gr5_A Non-ribosomal peptide s 99.8 1.6E-20 5.4E-25 117.4 5.6 65 1-66 392-465 (570)
9 3rg2_A Enterobactin synthase c 99.8 3.9E-20 1.3E-24 116.6 7.3 64 2-66 366-430 (617)
10 3ivr_A Putative long-chain-fat 99.8 2.9E-20 9.8E-25 114.8 6.3 64 1-66 330-394 (509)
11 3g7s_A Long-chain-fatty-acid-- 99.8 5.7E-20 2E-24 114.4 7.3 66 1-66 365-435 (549)
12 3nyq_A Malonyl-COA ligase; A/B 99.8 5E-20 1.7E-24 114.0 6.4 65 1-66 333-401 (505)
13 3l8c_A D-alanine--poly(phospho 99.8 3.9E-20 1.3E-24 114.3 5.9 65 1-66 331-399 (521)
14 3tsy_A Fusion protein 4-coumar 99.8 8.4E-20 2.9E-24 119.4 7.2 66 1-66 411-477 (979)
15 3etc_A AMP-binding protein; ad 99.8 8.6E-20 3E-24 114.6 6.8 64 1-66 402-471 (580)
16 1amu_A GRSA, gramicidin synthe 99.8 4.8E-20 1.6E-24 115.4 5.6 65 1-66 355-426 (563)
17 1v25_A Long-chain-fatty-acid-C 99.8 1.5E-19 5E-24 112.6 7.6 65 1-66 364-431 (541)
18 3ite_A SIDN siderophore synthe 99.8 1.4E-19 4.8E-24 112.7 7.1 65 1-66 356-423 (562)
19 2v7b_A Benzoate-coenzyme A lig 99.8 2.3E-19 7.9E-24 111.1 6.9 64 1-66 361-425 (529)
20 3c5e_A Acyl-coenzyme A synthet 99.8 3.5E-19 1.2E-23 111.6 6.4 64 1-66 383-452 (570)
21 1t5h_X 4-chlorobenzoyl COA lig 99.8 3.9E-19 1.3E-23 109.7 6.4 63 2-66 331-398 (504)
22 3kxw_A Saframycin MX1 syntheta 99.8 5.7E-19 2E-23 110.2 5.9 63 3-66 383-454 (590)
23 4dg8_A PA1221; ANL superfamily 99.8 4.5E-19 1.6E-23 112.3 5.0 64 2-66 343-415 (620)
24 3r44_A Fatty acyl COA syntheta 99.8 5.6E-19 1.9E-23 109.5 5.3 62 2-66 347-409 (517)
25 3fce_A D-alanine--poly(phospho 99.8 1E-18 3.4E-23 108.0 5.9 64 1-66 328-395 (512)
26 3e7w_A D-alanine--poly(phospho 99.7 2.3E-18 7.8E-23 106.4 6.5 64 1-66 327-394 (511)
27 3gqw_A Fatty acid AMP ligase; 99.7 1.4E-18 4.9E-23 107.9 5.1 63 1-66 394-457 (576)
28 1pg4_A Acetyl-COA synthetase; 99.7 2.1E-18 7.1E-23 109.5 4.9 65 1-66 444-513 (652)
29 2vsq_A Surfactin synthetase su 99.7 5.3E-18 1.8E-22 113.6 6.4 64 2-66 787-857 (1304)
30 1ry2_A Acetyl-coenzyme A synth 99.7 1.6E-17 5.3E-22 105.8 5.1 66 1-66 451-522 (663)
31 3ipl_A 2-succinylbenzoate--COA 99.6 4.1E-16 1.4E-20 96.1 6.4 58 1-66 336-394 (501)
32 3qov_A Phenylacetate-coenzyme 99.2 1.7E-11 5.8E-16 74.6 3.5 48 2-61 266-313 (436)
33 2y4o_A Phenylacetate-coenzyme 99.2 1.7E-11 5.9E-16 74.6 3.4 50 2-63 273-323 (443)
34 2y27_A Phenylacetate-coenzyme 99.2 1.8E-11 6.3E-16 74.4 3.3 50 2-63 271-321 (437)
35 4gs5_A Acyl-COA synthetase (AM 98.6 2E-08 6.8E-13 60.2 3.0 52 13-64 192-245 (358)
36 3hgu_A EHPF; phenazine, antibi 98.0 2.1E-06 7.3E-11 51.2 2.1 50 2-52 296-349 (369)
37 3th1_A Chlorocatechol 1,2-diox 67.0 12 0.00041 22.0 4.3 11 4-15 105-115 (260)
38 2boy_A 3-chlorocatechol 1,2-di 66.2 17 0.00059 21.2 4.8 11 4-15 108-118 (254)
39 2xsu_A Catechol 1,2 dioxygenas 63.8 16 0.00056 22.0 4.5 11 4-15 142-152 (312)
40 3e8v_A Possible transglutamina 62.2 4.7 0.00016 19.6 1.7 15 2-17 4-18 (82)
41 2azq_A Catechol 1,2-dioxygenas 62.0 20 0.00068 21.6 4.6 12 3-15 137-148 (311)
42 4b2g_A GH3-1 auxin conjugating 60.7 6.6 0.00023 25.7 2.6 31 13-59 392-422 (609)
43 3hhy_A 1,2-CTD, catechol 1,2-d 59.2 25 0.00087 20.8 4.8 12 3-15 136-147 (280)
44 3n9t_A PNPC; phospholipid bind 58.2 26 0.0009 20.9 4.7 12 3-15 134-145 (290)
45 3t63_A 3,4-PCD, protocatechuat 54.4 26 0.00089 19.6 4.1 10 5-15 55-64 (200)
46 1dmh_A 1,2-CTD, catechol 1,2-d 54.0 27 0.00092 21.0 4.3 20 3-24 138-157 (311)
47 1tmx_A Hydroxyquinol 1,2-dioxy 47.5 34 0.0012 20.4 4.0 12 3-15 138-149 (293)
48 1q5x_A Regulator of RNAse E ac 45.5 35 0.0012 18.3 4.0 18 48-65 137-154 (161)
49 3o5u_A Chlorocatechol 1,2-diox 45.2 45 0.0015 19.5 4.4 11 4-15 109-119 (257)
50 1nxj_A Probable S-adenosylmeth 42.8 37 0.0013 18.7 3.5 18 48-65 166-183 (183)
51 3c8o_A Regulator of ribonuclea 42.7 39 0.0013 18.2 3.8 18 48-65 137-154 (162)
52 4eql_A 4-substituted benzoates 41.0 63 0.0022 21.1 4.7 30 14-59 381-410 (581)
53 2pcn_A S-adenosylmethionine:2- 39.6 39 0.0013 18.1 3.2 18 48-65 135-152 (161)
54 1vi4_A Regulator of ribonuclea 35.6 44 0.0015 18.3 3.0 18 48-65 140-157 (174)
55 1j3l_A Demethylmenaquinone met 34.5 40 0.0014 18.2 2.7 18 48-65 136-153 (164)
56 1zx8_A Hypothetical protein TM 31.6 25 0.00086 18.5 1.6 17 49-65 73-89 (136)
57 3m95_A Autophagy related prote 30.6 22 0.00075 18.5 1.2 9 57-65 107-115 (125)
58 2r2q_A Gamma-aminobutyric acid 30.4 22 0.00076 17.8 1.2 8 58-65 99-106 (110)
59 2okm_A Collagen adhesin; colla 29.6 19 0.00066 19.4 0.9 14 48-63 7-20 (147)
60 3rui_B Autophagy-related prote 28.4 25 0.00086 18.0 1.2 9 57-65 101-109 (118)
61 3h9d_A ATG8, microtubule-assoc 28.4 25 0.00086 18.1 1.2 9 57-65 102-110 (119)
62 1eo6_A GATE-16, golgi-associat 27.3 27 0.00093 17.8 1.2 8 58-65 100-107 (117)
63 3qqz_A Putative uncharacterize 26.3 32 0.0011 19.8 1.5 11 56-66 230-240 (255)
64 2zjd_A Microtubule-associated 25.1 31 0.0011 18.0 1.2 8 58-65 109-116 (130)
65 1e50_B Core-binding factor CBF 24.8 17 0.00059 19.2 0.2 16 18-33 90-106 (134)
66 2c5q_A RRAA-like protein YER01 24.7 42 0.0014 19.3 1.8 18 48-65 168-185 (240)
67 2bum_B Protocatechuate 3,4-dio 24.2 1.1E+02 0.0038 17.6 4.6 12 3-15 83-94 (241)
68 1uhe_A Aspartate 1-decarboxyla 23.5 62 0.0021 16.2 2.0 27 2-28 18-49 (97)
69 3uji_P Envelope glycoprotein G 22.4 31 0.0011 11.9 0.7 7 48-54 15-21 (23)
70 1mhn_A SurviVal motor neuron p 22.4 44 0.0015 14.5 1.3 6 46-51 18-23 (59)
71 3t63_M 3,4-PCD, protocatechuat 22.1 1.2E+02 0.0042 17.4 4.6 22 2-25 81-102 (238)
72 3mly_P HIV-1 GP120 third varia 22.0 32 0.0011 11.9 0.7 7 48-54 15-21 (23)
73 3k4i_A Uncharacterized protein 21.8 51 0.0018 19.0 1.8 18 48-65 164-181 (244)
74 3m7a_A Uncharacterized protein 21.8 60 0.002 17.1 1.9 15 50-64 82-96 (140)
75 2nnz_A Hypothetical protein; b 21.7 74 0.0025 17.0 2.3 18 48-65 91-108 (153)
76 3pjy_A Hypothetical signal pep 21.6 61 0.0021 16.9 1.9 15 50-64 68-82 (136)
77 1h8g_A Major autolysin; cholin 21.0 83 0.0029 15.0 2.3 16 50-65 79-94 (95)
78 1wr7_A NEDD4-2; all-beta, liga 20.3 59 0.002 13.0 1.4 9 57-65 17-25 (41)
79 2law_A Yorkie homolog; YAP, SM 20.3 50 0.0017 13.0 1.2 7 59-65 17-23 (38)
No 1
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.86 E-value=7.2e-22 Score=120.64 Aligned_cols=65 Identities=34% Similarity=0.623 Sum_probs=58.8
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC-----------CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-----------DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~-----------~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|++|||+|+||+ +.|||++++.+++.|. .++||+|||+|++| ||+|+|+
T Consensus 402 ~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~ 478 (480)
T 3t5a_A 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFII 478 (480)
T ss_dssp SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEEC
T ss_pred CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEe
Confidence 3689999877899999999999999999 9999999999998884 45699999999997 9999985
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.85 E-value=3.7e-21 Score=118.93 Aligned_cols=66 Identities=38% Similarity=0.544 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+|+||+ +.|||++++.+++.|..++||+|||++++|+||+|+|+
T Consensus 329 ~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~ 395 (503)
T 4fuq_A 329 VSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHIL 395 (503)
T ss_dssp CEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEEC
T ss_pred eEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEE
Confidence 4688999666999999999999999999 99999999999999977899999999999999999985
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.84 E-value=5.8e-21 Score=118.63 Aligned_cols=66 Identities=44% Similarity=0.832 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+|+|+. +.|||++++.+++.|..++||+|||+|++|+||+|+|+
T Consensus 364 ~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~ 430 (536)
T 3ni2_A 364 AEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIV 430 (536)
T ss_dssp CEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred cEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEE
Confidence 4688999766999999999999999999 99999999999999977899999999999999999874
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.84 E-value=7.4e-21 Score=118.31 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=60.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ ++++++|+.|||+|+||+ +.|||++++.+++.|..++||+|||+|++|+||+|+|+
T Consensus 362 ~~~i~d~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~ 426 (539)
T 1mdb_A 362 ESRVWDDH-DRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVE 426 (539)
T ss_dssp EEEEECTT-SCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred eEEEECCC-CCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEe
Confidence 68899977 999999999999999999 99999999999999977899999999999999999874
No 5
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.84 E-value=9.3e-21 Score=117.98 Aligned_cols=66 Identities=41% Similarity=0.753 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+|+||+ +.|||++++.+++.|..++||+|||+|++|+||+|+|+
T Consensus 369 ~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~ 435 (550)
T 3rix_A 369 FEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV 435 (550)
T ss_dssp CEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC
T ss_pred cEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEE
Confidence 4688999766999999999999999999 99999999999998877899999999999999999985
No 6
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.83 E-value=1.3e-20 Score=117.36 Aligned_cols=65 Identities=31% Similarity=0.568 Sum_probs=60.6
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|++|||+|+||. +.|||++++.+++.|..++||+|||+|++|+||+|+|+
T Consensus 370 ~~~~i~d~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~ 435 (544)
T 3o83_A 370 DEIKIVDEQ-YREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVV 435 (544)
T ss_dssp CEEEEECTT-SCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEE
T ss_pred cEEEEECCC-CCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEE
Confidence 368899976 999999999999999999 99999999999999977899999999999999999874
No 7
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.82 E-value=2.1e-20 Score=116.54 Aligned_cols=66 Identities=42% Similarity=0.779 Sum_probs=60.5
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+++|+. +.|||++++.+++.|..++||+|||+|++|+||+|+|+
T Consensus 371 ~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~ 437 (548)
T 2d1s_A 371 FKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIV 437 (548)
T ss_dssp CEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred ceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEe
Confidence 4688999555999999999999999999 99999999999998877899999999999999999874
No 8
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.82 E-value=1.6e-20 Score=117.44 Aligned_cols=65 Identities=28% Similarity=0.307 Sum_probs=58.6
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC--------CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD--------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~--------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|++|||+|+||+ +.|||++++.+++.|.. ++||+|||+|++|+||+|+|+
T Consensus 392 ~~v~i~d~~-~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~ 465 (570)
T 4gr5_A 392 KRAYVLDDD-LKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYV 465 (570)
T ss_dssp EEEEEECTT-SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEE
T ss_pred CEEEEECCC-CCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEE
Confidence 368899977 999999999999999999 99999999999888743 269999999999999999884
No 9
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.81 E-value=3.9e-20 Score=116.60 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=60.4
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++.|+|++ +++++.|++|||+|+|+. +.|||++++.+++.|..++||+|||++++++||+|+|+
T Consensus 366 ~~~i~d~~-~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~ 430 (617)
T 3rg2_A 366 EVWVADAE-GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQ 430 (617)
T ss_dssp EEEEECTT-SCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred eEEEECCC-CCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEE
Confidence 67899977 999999999999999999 99999999999999988899999999999999999874
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.81 E-value=2.9e-20 Score=114.77 Aligned_cols=64 Identities=36% Similarity=0.658 Sum_probs=59.8
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|+|+. +.|||++++.+++.| .++||+|||++++|+||+|+|+
T Consensus 330 ~~~~i~d~~-~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~ 394 (509)
T 3ivr_A 330 RTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYA 394 (509)
T ss_dssp CEEEEECTT-SCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEE
T ss_pred cEEEEECCC-CCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEe
Confidence 468899988 999999999999999999 999999999999999 6899999999999999999874
No 11
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.81 E-value=5.7e-20 Score=114.44 Aligned_cols=66 Identities=23% Similarity=0.446 Sum_probs=59.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC--CCC--eEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD--DDG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~--~~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+|+||. +.|||++++.+++.|. .++ ||+|||+|++|+||+|+|+
T Consensus 365 ~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~ 435 (549)
T 3g7s_A 365 IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQ 435 (549)
T ss_dssp CEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEE
T ss_pred CEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEe
Confidence 4688999555999999999999999999 9999999999998873 456 9999999999999999874
No 12
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.81 E-value=5e-20 Score=114.01 Aligned_cols=65 Identities=29% Similarity=0.521 Sum_probs=55.3
Q ss_pred CEEEEEcCCCCeeCCC---CCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPD---GKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~---~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++. |++|||+|+|++ +.|||++++.+++.|..++||+|||+|++|+||+|+|+
T Consensus 333 ~~~~i~d~~-g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~ 401 (505)
T 3nyq_A 333 VELRLVEED-GTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV 401 (505)
T ss_dssp CEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred CEEEEECCC-CCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe
Confidence 468899987 888876 899999999999 99999999999999977899999999999999999874
No 13
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.81 E-value=3.9e-20 Score=114.33 Aligned_cols=65 Identities=29% Similarity=0.375 Sum_probs=58.7
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhccc---CCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML---DDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~---~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|+||. +.|||++++.+++.| ..++||+|||+|++|++|+|+|+
T Consensus 331 ~~~~i~d~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~ 399 (521)
T 3l8c_A 331 SPTYIIDED-GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYG 399 (521)
T ss_dssp SCEEEECTT-SCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEE
T ss_pred CEEEEECCC-cCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEe
Confidence 357899977 999999999999999999 999999999998887 34579999999999999999874
No 14
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.80 E-value=8.4e-20 Score=119.45 Aligned_cols=66 Identities=41% Similarity=0.722 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|++|||+|+||. +.|||++++.+++.|..++||+|||++++|+||+|+|+
T Consensus 411 ~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~ 477 (979)
T 3tsy_A 411 AEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIV 477 (979)
T ss_dssp CEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred cEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEe
Confidence 4689999777999999999999999999 99999999999999978899999999999999999874
No 15
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.80 E-value=8.6e-20 Score=114.64 Aligned_cols=64 Identities=28% Similarity=0.435 Sum_probs=59.1
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEc-----CC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKG-----DV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~-----~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|++ +. +.|||++++.+++.| .++||+|||+|++|+||+|+|+
T Consensus 402 ~~v~ivd~~-g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~ 471 (580)
T 3etc_A 402 YKIELMDRD-GRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471 (580)
T ss_dssp CEEEEECTT-SCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred CEEEEECCC-CCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEE
Confidence 468999987 9999999999999996 67 999999999999999 6899999999999999999974
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.80 E-value=4.8e-20 Score=115.39 Aligned_cols=65 Identities=31% Similarity=0.396 Sum_probs=58.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC------CCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|+||+ +.|||++++.+++.|.. ++||+|||+|++|+||+|+|+
T Consensus 355 ~~v~i~d~~-~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~ 426 (563)
T 1amu_A 355 TQIYIVDEN-LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 426 (563)
T ss_dssp EEEEEECTT-SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE
T ss_pred CEEEEECCC-cCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEe
Confidence 368899977 999999999999999999 99999999999888732 359999999999999999874
No 17
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.80 E-value=1.5e-19 Score=112.57 Aligned_cols=65 Identities=32% Similarity=0.409 Sum_probs=58.6
Q ss_pred CEEEEEcCCCCeeCCC--CCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPD--GKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~--~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++. ++.|||+|+||. +.|||++++.+++.|..++||+|||+|++|+||+|+|+
T Consensus 364 ~~~~i~d~~-g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~ 431 (541)
T 1v25_A 364 VRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK 431 (541)
T ss_dssp CEEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred cEEEEECCC-CCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEe
Confidence 468999987 888885 368999999999 99999999999999966899999999999999999874
No 18
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.80 E-value=1.4e-19 Score=112.73 Aligned_cols=65 Identities=23% Similarity=0.363 Sum_probs=57.7
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCC--eEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++++++++|+.|||+|+|+. +.|||++++.+...+ .++ ||+|||+|++|+||+|+|+
T Consensus 356 ~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~ 423 (562)
T 3ite_A 356 SVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFL 423 (562)
T ss_dssp CEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred CeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEE
Confidence 3678999776889999999999999999 999999999887665 455 9999999999999999984
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.79 E-value=2.3e-19 Score=111.14 Aligned_cols=64 Identities=28% Similarity=0.515 Sum_probs=59.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|+|+. +.|||++++.+.+.| .++||+|||++++|+||+|+|+
T Consensus 361 ~~~~i~d~~-g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~ 425 (529)
T 2v7b_A 361 YEIELRDEA-GHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYA 425 (529)
T ss_dssp CEEEEECTT-SCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred CEEEEECCC-CCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEe
Confidence 468899977 999999999999999999 999999999999888 5899999999999999999874
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.78 E-value=3.5e-19 Score=111.62 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=59.0
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEE-----cCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLK-----GDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~-----~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|+ |+. +.|||++++.+.+.| .++||+|||++++|+||+|+|+
T Consensus 383 ~~v~i~d~~-g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~ 452 (570)
T 3c5e_A 383 YDVQIIDDK-GNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFM 452 (570)
T ss_dssp CCEEEECTT-SCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred ceEEEECCC-CCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEE
Confidence 368899977 999999999999999 889 999999999999888 6899999999999999999874
No 21
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.78 E-value=3.9e-19 Score=109.74 Aligned_cols=63 Identities=38% Similarity=0.611 Sum_probs=57.8
Q ss_pred EEEEEcCCCC---eeCCCCCceEEEEE-cCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTS---VQLPDGKTGELCLK-GDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g---~~~~~~~~Gel~i~-~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ + +++++|+.|||+++ ++. +.|||++++.+++.| .++||+|||+|++|+||+|+|+
T Consensus 331 ~~~i~~~~-~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~ 398 (504)
T 1t5h_X 331 EVRIVRIG-GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRIL 398 (504)
T ss_dssp CEEEECTT-SCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred ceeEEecc-CCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEe
Confidence 57888876 6 89999999999999 889 999999999999998 7899999999999999999874
No 22
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.77 E-value=5.7e-19 Score=110.17 Aligned_cols=63 Identities=27% Similarity=0.460 Sum_probs=55.9
Q ss_pred EEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC------CC--eEecCceEEECCCCcEEEC
Q psy4969 3 RTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 3 v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~------~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
++|+|+++++++++|++|||+|+||+ +.|||++++.+++.|.. ++ ||+|||+|++| +|+|+|+
T Consensus 383 v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~ 454 (590)
T 3kxw_A 383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVT 454 (590)
T ss_dssp EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEE
T ss_pred eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEE
Confidence 67889877899999999999999999 99999999999988843 14 99999999999 9999874
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.76 E-value=4.5e-19 Score=112.25 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=57.1
Q ss_pred EEEEEcCCCCee-CCCCCceEEEEEcCC-CccccCCchhhhcccCCC-------CeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQ-LPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD-------GWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~-~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~-------~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ +++ +++|++|||+|+|+. +.|||++++.|++.|..+ +||+|||++++|+||+|+|+
T Consensus 343 ~~~i~d~~-~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~ 415 (620)
T 4dg8_A 343 AVLLLDEH-GQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFI 415 (620)
T ss_dssp EEEEECTT-SCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEE
T ss_pred EEEEECcc-CCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEE
Confidence 67899987 665 789999999999999 999999999999888432 69999999999999999874
No 24
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.76 E-value=5.6e-19 Score=109.49 Aligned_cols=62 Identities=31% Similarity=0.552 Sum_probs=57.4
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ +.+++.| .|||+|+|+. +.|||++++.+++.| .++||+|||+|++|+||+|+|+
T Consensus 347 ~~~i~d~~-~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~ 409 (517)
T 3r44_A 347 DVAVRGDD-GVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIK 409 (517)
T ss_dssp EEEEECTT-SCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred EEEEECCC-CCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEe
Confidence 57888877 8999988 8999999999 999999999999999 7899999999999999999874
No 25
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.76 E-value=1e-18 Score=107.96 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=57.1
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC---CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD---DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~---~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+++||+ +.|||++++.+++.|. .++||+|||+|++ +||+|+|+
T Consensus 328 ~~~~i~d~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~ 395 (512)
T 3fce_A 328 CRLLIMKED-GTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN 395 (512)
T ss_dssp CEEEEECSS-SCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEE
T ss_pred cEEEEECCC-CCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEe
Confidence 367899977 999999999999999999 9999999999988872 3569999999999 79999874
No 26
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.75 E-value=2.3e-18 Score=106.45 Aligned_cols=64 Identities=31% Similarity=0.502 Sum_probs=56.4
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccC-CCC--eEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-DDG--WLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~-~~~--~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|+.|||+|+||. +.|||++++.+++.|. .++ ||+|||+|++ +||+|+|+
T Consensus 327 ~~~~i~d~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~ 394 (511)
T 3e7w_A 327 MNIFIMDEE-GQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQ 394 (511)
T ss_dssp CEEEEECTT-SCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEE
T ss_pred CEEEEECCC-CCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEE
Confidence 468899987 999999999999999999 9999999999988873 223 7999999999 58999874
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.74 E-value=1.4e-18 Score=107.92 Aligned_cols=63 Identities=27% Similarity=0.564 Sum_probs=56.5
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ ++++++|++|||+|+|+. +.|||++++.+.+.+ .++||+|||+|++ +||+|+|+
T Consensus 394 ~~~~i~d~~-g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~ 457 (576)
T 3gqw_A 394 HGIEIRNEA-GMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVT 457 (576)
T ss_dssp CEEEEECTT-SCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEE
T ss_pred CeEEEECCC-CCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEE
Confidence 368899976 999999999999999999 999999998887665 7899999999999 79999874
No 28
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.73 E-value=2.1e-18 Score=109.53 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=57.3
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEc--CC-CccccCCchhhhcccC--CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKEMLD--DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~--~~-~~gY~~~~~~~~~~~~--~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++++.|+.|||+|+| |+ +.|||++++.+.+.+. .++||+|||+|++|+||+|+|+
T Consensus 444 ~~v~i~d~~-g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~ 513 (652)
T 1pg4_A 444 VQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWIT 513 (652)
T ss_dssp CCEEEECTT-CCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEE
T ss_pred CeEEEECCC-CCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEE
Confidence 368899987 9999999999999999 67 9999999998876652 3789999999999999999984
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.73 E-value=5.3e-18 Score=113.56 Aligned_cols=64 Identities=41% Similarity=0.515 Sum_probs=58.0
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCC------CCeEecCceEEECCCCcEEEC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~------~~~~~TGD~~~~d~dG~l~~~ 66 (66)
+++|+|++ ++++|.|++|||+|+|++ +.|||++++.|+++|.. ++||+|||+|++++||+|+|+
T Consensus 787 ~~~i~d~~-~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~ 857 (1304)
T 2vsq_A 787 SVYILNEQ-SQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA 857 (1304)
T ss_dssp EEEEECTT-SCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEE
T ss_pred EEEEECCC-cCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEE
Confidence 67899987 999999999999999999 99999999999988832 359999999999999999874
No 30
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.70 E-value=1.6e-17 Score=105.82 Aligned_cols=66 Identities=23% Similarity=0.265 Sum_probs=57.0
Q ss_pred CEEEEEcCCCCeeCCC-CCceEEEEEc--CC-CccccCCchhhhcccC--CCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPD-GKTGELCLKG--DV-FLGYRNKVEATKEMLD--DDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~-~~~Gel~i~~--~~-~~gY~~~~~~~~~~~~--~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|+++|++++. |+.|||+|++ |+ +.|||++++.+.+.|. .+|||+|||+|++|+||+|+|+
T Consensus 451 ~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~ 522 (663)
T 1ry2_A 451 IDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWIL 522 (663)
T ss_dssp CCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEEC
T ss_pred CeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEE
Confidence 3578999834999988 9999999999 47 9999999998877663 3789999999999999999985
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.64 E-value=4.1e-16 Score=96.06 Aligned_cols=58 Identities=29% Similarity=0.505 Sum_probs=49.9
Q ss_pred CEEEEEcCCCCeeCCCCCceEEEEEcCC-CccccCCchhhhcccCCCCeEecCceEEECCCCcEEEC
Q psy4969 1 MSRTIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIW 66 (66)
Q Consensus 1 ~~v~i~d~~~g~~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG~l~~~ 66 (66)
++++|+|++ +++.|||+|+|+. +.|||++++.+.. | .++||+|||++++|+||+|+|+
T Consensus 336 ~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~ 394 (501)
T 3ipl_A 336 VDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIY 394 (501)
T ss_dssp CEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEE
T ss_pred cEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEE
Confidence 356777754 4567999999999 9999999998876 6 6899999999999999999874
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.17 E-value=1.7e-11 Score=74.57 Aligned_cols=48 Identities=38% Similarity=0.452 Sum_probs=40.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECCCC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 61 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~dG 61 (66)
.++|+|+++++++++|+.|||++++.. ...+ +.+||+|||+++++++|
T Consensus 266 ~v~i~d~~~g~~~~~g~~Gel~v~~~~-----------~~~~-~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 266 LVEIIDPETGEPVPEGEIGELVLTTLD-----------REMM-PLIRYRTRDLTRILPGK 313 (436)
T ss_dssp EEEEECTTTCSBCSTTCCEEEEEEESS-----------CCSS-CCCSEEEEEEECEECSC
T ss_pred EEEEEECCCCCCCCCCCceEEEEeccC-----------cCCc-eEEEEEcCCEEEEcCCC
Confidence 578999666999999999999999743 2234 57899999999999998
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.16 E-value=1.7e-11 Score=74.65 Aligned_cols=50 Identities=40% Similarity=0.485 Sum_probs=41.3
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECCC-CcE
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD-GTH 63 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~d-G~l 63 (66)
.++|+|+++++++++|+.|||++++.. .+.| +.+||+|||+++++++ |++
T Consensus 273 ~~~i~d~~~g~~~~~G~~Gel~v~~~t-----------~~~~-p~~~y~TGDl~~~~~~cG~~ 323 (443)
T 2y4o_A 273 YPEIIDPVTGEVLPDGSQGELVFTSLT-----------KEAM-PVIRYRTRDLTALLPPTARA 323 (443)
T ss_dssp EEEEECTTTCCBCCTTCCEEEEEEESS-----------CSSS-CCSSEEEEEEECEECCSSSS
T ss_pred EEEEEcCCCCCCCCCCCceEEEEeCCC-----------cccC-hhheeecCCEEEEcCCCCCC
Confidence 578999766999999999999998733 2234 5689999999999999 975
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.15 E-value=1.8e-11 Score=74.41 Aligned_cols=50 Identities=40% Similarity=0.461 Sum_probs=41.0
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECC-CCcE
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP-DGTH 63 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~-dG~l 63 (66)
.++|+|+++++++++|+.|||++++.. .+.| +.+||+|||++++|+ +|++
T Consensus 271 ~~~i~d~~~g~~~~~g~~Gel~v~~~t-----------~~~~-~~~~y~TGDl~~~~~~~G~~ 321 (437)
T 2y27_A 271 YPEIIDPETGEVLPDGELGELVFTSLT-----------KEAL-PIIRYRTRDLTRLLPGTART 321 (437)
T ss_dssp EEEEECTTTCCBCCTTCCEEEEEEESS-----------CSSS-CCCSEEEEEEECEECCSSSS
T ss_pred EEEEEcCCCCCCCCCCCccEEEEecCC-----------cCCc-hhheeecCCEEEEeCCCCCC
Confidence 578899766999999999999998733 2334 568999999999999 6984
No 35
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.62 E-value=2e-08 Score=60.23 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=40.1
Q ss_pred eCCCCCceEEEEEcCC-CccccCCchhhhc-ccCCCCeEecCceEEECCCCcEE
Q psy4969 13 QLPDGKTGELCLKGDV-FLGYRNKVEATKE-MLDDDGWLHTGDLAYRLPDGTHF 64 (66)
Q Consensus 13 ~~~~~~~Gel~i~~~~-~~gY~~~~~~~~~-~~~~~~~~~TGD~~~~d~dG~l~ 64 (66)
+++..+.|++++..|. ..+|.+..+...+ .+..++||+|||++++|++|+++
T Consensus 192 ~~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g~~~ 245 (358)
T 4gs5_A 192 ALNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNAFQW 245 (358)
T ss_dssp ECSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSEEEE
T ss_pred cccccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCceEE
Confidence 4555677899999999 8889887665433 34467899999999999998554
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=98.02 E-value=2.1e-06 Score=51.18 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=32.1
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEEcCC----CccccCCchhhhcccCCCCeEecC
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLKGDV----FLGYRNKVEATKEMLDDDGWLHTG 52 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~~~~----~~gY~~~~~~~~~~~~~~~~~~TG 52 (66)
+++|+|+++++++++|++|||+|++.. +.+|+..+..+.... .++|+.+|
T Consensus 296 ~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~-~~g~~~d~ 349 (369)
T 3hgu_A 296 TYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPG-VSGFAGDR 349 (369)
T ss_dssp EEEEECTTTCSBCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-STTCSSCE
T ss_pred EEEEECCCCCcCCCCCCceEEEEEEcCcccccccccCCceEEEecC-CCCCcCcc
Confidence 678999855999999999999998632 334544443333222 34444443
No 37
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=66.96 E-value=12 Score=21.96 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=5.8
Q ss_pred EEEcCCCCeeCC
Q psy4969 4 TIIDPVTSVQLP 15 (66)
Q Consensus 4 ~i~d~~~g~~~~ 15 (66)
+|+|.+ |++++
T Consensus 105 ~V~D~~-G~Pv~ 115 (260)
T 3th1_A 105 TVRSDT-GELLA 115 (260)
T ss_dssp EEEETT-SCBCS
T ss_pred EEECCC-CCCcC
Confidence 455544 55554
No 38
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=66.15 E-value=17 Score=21.19 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=5.6
Q ss_pred EEEcCCCCeeCC
Q psy4969 4 TIIDPVTSVQLP 15 (66)
Q Consensus 4 ~i~d~~~g~~~~ 15 (66)
+|+|.+ |++++
T Consensus 108 ~V~D~~-G~Pv~ 118 (254)
T 2boy_A 108 EVVDQE-GAPLA 118 (254)
T ss_dssp EEECTT-SCBCC
T ss_pred EEECCC-CCCCC
Confidence 455544 55554
No 39
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=63.83 E-value=16 Score=21.96 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=5.5
Q ss_pred EEEcCCCCeeCC
Q psy4969 4 TIIDPVTSVQLP 15 (66)
Q Consensus 4 ~i~d~~~g~~~~ 15 (66)
+|+|.+ |++++
T Consensus 142 ~V~D~~-G~Pv~ 152 (312)
T 2xsu_A 142 TVTDTE-GNIIE 152 (312)
T ss_dssp EEEETT-SCBCT
T ss_pred EEECCC-CCCCC
Confidence 455543 55554
No 40
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=62.23 E-value=4.7 Score=19.60 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.2
Q ss_pred EEEEEcCCCCeeCCCC
Q psy4969 2 SRTIIDPVTSVQLPDG 17 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~ 17 (66)
.|+|+|.+ |+|++--
T Consensus 4 ~v~V~d~~-GkPV~gA 18 (82)
T 3e8v_A 4 SVLVTDAE-GQPVADA 18 (82)
T ss_dssp EEEEECTT-SCBCTTC
T ss_pred EEEEEcCC-CCCCCCC
Confidence 68899988 9998754
No 41
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=61.96 E-value=20 Score=21.57 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=6.7
Q ss_pred EEEEcCCCCeeCC
Q psy4969 3 RTIIDPVTSVQLP 15 (66)
Q Consensus 3 v~i~d~~~g~~~~ 15 (66)
.+|+|.+ |++++
T Consensus 137 G~V~D~~-G~Pv~ 148 (311)
T 2azq_A 137 GQVFDAN-GKPLA 148 (311)
T ss_dssp EEEECSS-SCBCT
T ss_pred EEEEcCC-CCCCC
Confidence 3456655 66655
No 42
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=60.68 E-value=6.6 Score=25.72 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=21.5
Q ss_pred eCCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECC
Q psy4969 13 QLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 59 (66)
Q Consensus 13 ~~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~ 59 (66)
.|..|+.+||+|... .|+|. |++||+.++..
T Consensus 392 eVe~G~~YelViTt~--~GL~R--------------Yr~GD~v~v~~ 422 (609)
T 4b2g_A 392 HVEVGKEYELVITTY--AGLYR--------------YRVGDILRVTG 422 (609)
T ss_dssp GCCTTCEEEEEEECT--TSCCS--------------EEEEEEEEEEE
T ss_pred HcCCCCeEEEehhhh--hhhhh--------------eecCCEEEEee
Confidence 467888899999532 23331 78999988863
No 43
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=59.17 E-value=25 Score=20.82 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=6.0
Q ss_pred EEEEcCCCCeeCC
Q psy4969 3 RTIIDPVTSVQLP 15 (66)
Q Consensus 3 v~i~d~~~g~~~~ 15 (66)
.+|+|.+ |++++
T Consensus 136 G~V~D~~-G~Pv~ 147 (280)
T 3hhy_A 136 GQVTDLD-GNGLA 147 (280)
T ss_dssp EEEECTT-SCBCS
T ss_pred EEEECCC-CCCCC
Confidence 3455544 55554
No 44
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=58.25 E-value=26 Score=20.85 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=7.4
Q ss_pred EEEEcCCCCeeCC
Q psy4969 3 RTIIDPVTSVQLP 15 (66)
Q Consensus 3 v~i~d~~~g~~~~ 15 (66)
.+|+|.+ |++++
T Consensus 134 G~V~D~~-G~Pv~ 145 (290)
T 3n9t_A 134 GRVLDVQ-GRPVV 145 (290)
T ss_dssp EEEEETT-SCBCS
T ss_pred EEEECCC-CCCCC
Confidence 4566755 77664
No 45
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=54.38 E-value=26 Score=19.65 Aligned_cols=10 Identities=10% Similarity=0.036 Sum_probs=4.3
Q ss_pred EEcCCCCeeCC
Q psy4969 5 IIDPVTSVQLP 15 (66)
Q Consensus 5 i~d~~~g~~~~ 15 (66)
|+|.+ |++++
T Consensus 55 V~D~~-G~Pv~ 64 (200)
T 3t63_A 55 VYDGN-GHLVR 64 (200)
T ss_dssp EECTT-SCBCS
T ss_pred EECCC-CCCCC
Confidence 44443 44443
No 46
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=53.96 E-value=27 Score=21.04 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=9.7
Q ss_pred EEEEcCCCCeeCCCCCceEEEE
Q psy4969 3 RTIIDPVTSVQLPDGKTGELCL 24 (66)
Q Consensus 3 v~i~d~~~g~~~~~~~~Gel~i 24 (66)
.+|+|.+ |++++. ..=|||=
T Consensus 138 G~V~D~~-G~Pv~~-A~VeiWq 157 (311)
T 1dmh_A 138 GTIFDAD-GKPLPN-AKVEIWH 157 (311)
T ss_dssp EEEECTT-SCBCTT-CEEEEEE
T ss_pred EEEEcCC-CCCCCC-cEEEEEc
Confidence 3456654 666542 2234444
No 47
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=47.49 E-value=34 Score=20.40 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=6.6
Q ss_pred EEEEcCCCCeeCC
Q psy4969 3 RTIIDPVTSVQLP 15 (66)
Q Consensus 3 v~i~d~~~g~~~~ 15 (66)
.+|+|.+ |++++
T Consensus 138 G~V~D~~-G~Pv~ 149 (293)
T 1tmx_A 138 GTVTDTD-GNPVP 149 (293)
T ss_dssp EEEEETT-SCBCT
T ss_pred EEEECCC-CCCCC
Confidence 3556644 66654
No 48
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=45.52 E-value=35 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.0
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
.++.||+.+-|+||-+.+
T Consensus 137 ~V~PGD~i~aD~dGVvvi 154 (161)
T 1q5x_A 137 TFFSGDHLYADNTGIILS 154 (161)
T ss_dssp EECTTCEEEECSSCEEEE
T ss_pred EECCCCEEEEcCCeEEEE
Confidence 688999999999998765
No 49
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=45.24 E-value=45 Score=19.52 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=5.4
Q ss_pred EEEcCCCCeeCC
Q psy4969 4 TIIDPVTSVQLP 15 (66)
Q Consensus 4 ~i~d~~~g~~~~ 15 (66)
+|+|.+ |++++
T Consensus 109 ~V~D~~-G~Pv~ 119 (257)
T 3o5u_A 109 SVRDTS-GTPIT 119 (257)
T ss_dssp EEECTT-CCBCT
T ss_pred EEECCC-CCCCC
Confidence 455543 55553
No 50
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=42.82 E-value=37 Score=18.74 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.7
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
..+.||+.+-|+||-+.|
T Consensus 166 ~V~PGD~I~aD~dGVVvI 183 (183)
T 1nxj_A 166 TFVPGDIAYSDDDGIIVV 183 (183)
T ss_dssp EECTTSEEEECSSCEEEC
T ss_pred EECCCCEEEECCCeEEEC
Confidence 688999999999998754
No 51
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=42.75 E-value=39 Score=18.18 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.9
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
.++.||+.+-|+||-+.+
T Consensus 137 ~V~PGD~i~aD~dGVvvi 154 (162)
T 3c8o_A 137 TFRPGEFVYADNNGIIVS 154 (162)
T ss_dssp EECTTSEEEECSSCEEEE
T ss_pred EECCCCEEEEcCCeEEEE
Confidence 688999999999998765
No 52
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=41.01 E-value=63 Score=21.07 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=18.7
Q ss_pred CCCCCceEEEEEcCCCccccCCchhhhcccCCCCeEecCceEEECC
Q psy4969 14 LPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 59 (66)
Q Consensus 14 ~~~~~~Gel~i~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~d~ 59 (66)
+..|+.++|+|.... |.| -|++||+.++..
T Consensus 381 Ve~G~~YelViTt~~--GL~--------------RYr~GD~v~v~~ 410 (581)
T 4eql_A 381 VKLGCTYEPVVTNFA--GLY--------------RMRVGDIVLVTG 410 (581)
T ss_dssp CCTTCEEEEEEECSS--SCC--------------SEECCEEEEEEE
T ss_pred cCCCceEEEEEeecc--cee--------------eEEcCCEEEEcc
Confidence 456677777775322 111 278999888764
No 53
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=39.63 E-value=39 Score=18.12 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.8
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
..+.||+.+-|+||-+.+
T Consensus 135 ~V~PGD~i~aD~dGVvvi 152 (161)
T 2pcn_A 135 RWEPGAYVYADADGVVVA 152 (161)
T ss_dssp EECTTCEEEEETTEEEEE
T ss_pred EECCCCEEEECCCeEEEE
Confidence 688999999999998765
No 54
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=35.59 E-value=44 Score=18.26 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.8
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
.++.||+.+-|+||-+.+
T Consensus 140 ~V~PGD~I~aD~dGVvvi 157 (174)
T 1vi4_A 140 IVEPGDYLYADWNGILMS 157 (174)
T ss_dssp EECTTSEEEEETTEEEEE
T ss_pred EECCCCEEEEcCCeEEEE
Confidence 688999999999998765
No 55
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=34.52 E-value=40 Score=18.18 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.8
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
.++.||+.+-|+||-+.+
T Consensus 136 ~V~PGD~i~aD~dGVvvi 153 (164)
T 1j3l_A 136 EVLPGSFLLADEDGLLLL 153 (164)
T ss_dssp EECTTCEEEEETTEEEEE
T ss_pred EECCCCEEEECCCeEEEE
Confidence 688999999999998765
No 56
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=31.61 E-value=25 Score=18.53 Aligned_cols=17 Identities=24% Similarity=0.519 Sum_probs=13.7
Q ss_pred EecCceEEECCCCcEEE
Q psy4969 49 LHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 49 ~~TGD~~~~d~dG~l~~ 65 (66)
+..||++|+-+-|.|-|
T Consensus 73 ~~~GDIaYw~pgg~LaI 89 (136)
T 1zx8_A 73 VEIGDVGYWPPGKALCL 89 (136)
T ss_dssp BCTTEEEEEGGGTEEEE
T ss_pred CCCCcEEEeCCCCEEEE
Confidence 57899999988887765
No 57
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=30.61 E-value=22 Score=18.51 Aligned_cols=9 Identities=22% Similarity=0.025 Sum_probs=6.9
Q ss_pred ECCCCcEEE
Q psy4969 57 RLPDGTHFI 65 (66)
Q Consensus 57 ~d~dG~l~~ 65 (66)
.|+||+||+
T Consensus 107 kdeDGfLY~ 115 (125)
T 3m95_A 107 HDEDFFLYI 115 (125)
T ss_dssp CCTTSCEEE
T ss_pred CCCCCeEEE
Confidence 368888886
No 58
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=30.43 E-value=22 Score=17.85 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=6.5
Q ss_pred CCCCcEEE
Q psy4969 58 LPDGTHFI 65 (66)
Q Consensus 58 d~dG~l~~ 65 (66)
|+||+||+
T Consensus 99 d~DGfLyi 106 (110)
T 2r2q_A 99 EEDYFLYV 106 (110)
T ss_dssp CTTSCEEE
T ss_pred CCCCEEEE
Confidence 67888887
No 59
>2okm_A Collagen adhesin; collagen-binding, cell adhesion; 1.65A {Enterococcus faecalis}
Probab=29.57 E-value=19 Score=19.37 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=9.8
Q ss_pred eEecCceEEECCCCcE
Q psy4969 48 WLHTGDLAYRLPDGTH 63 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l 63 (66)
+|.|||+. ++++.+
T Consensus 7 yyKtGdm~--~d~~~V 20 (147)
T 2okm_A 7 FYKVGDLA--GESNQV 20 (147)
T ss_dssp EEEEEECC--SSTTEE
T ss_pred EEeccCCC--CCCCeE
Confidence 68999994 555553
No 60
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=28.45 E-value=25 Score=18.02 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=6.9
Q ss_pred ECCCCcEEE
Q psy4969 57 RLPDGTHFI 65 (66)
Q Consensus 57 ~d~dG~l~~ 65 (66)
.|+||+||+
T Consensus 101 kdeDGfLyv 109 (118)
T 3rui_B 101 KDKDGFLYV 109 (118)
T ss_dssp CCTTSCEEE
T ss_pred CCCCCeEEE
Confidence 378888886
No 61
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=28.42 E-value=25 Score=18.06 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=6.7
Q ss_pred ECCCCcEEE
Q psy4969 57 RLPDGTHFI 65 (66)
Q Consensus 57 ~d~dG~l~~ 65 (66)
.|+||+||+
T Consensus 102 kd~DGfLyv 110 (119)
T 3h9d_A 102 KDEDGFLYM 110 (119)
T ss_dssp CCTTSCEEE
T ss_pred CCCCCeEEE
Confidence 367888876
No 62
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=27.26 E-value=27 Score=17.77 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=6.4
Q ss_pred CCCCcEEE
Q psy4969 58 LPDGTHFI 65 (66)
Q Consensus 58 d~dG~l~~ 65 (66)
|+||+||+
T Consensus 100 d~DGfLyi 107 (117)
T 1eo6_A 100 DEDGFLYV 107 (117)
T ss_dssp CTTSCEEE
T ss_pred CCCCEEEE
Confidence 67888886
No 63
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=26.28 E-value=32 Score=19.75 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=7.1
Q ss_pred EECCCCcEEEC
Q psy4969 56 YRLPDGTHFIW 66 (66)
Q Consensus 56 ~~d~dG~l~~~ 66 (66)
.+|++|+|||+
T Consensus 230 a~d~~G~lyIv 240 (255)
T 3qqz_A 230 AMDASGNIYIV 240 (255)
T ss_dssp EECTTCCEEEE
T ss_pred EECCCCCEEEE
Confidence 35677777764
No 64
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=25.13 E-value=31 Score=18.02 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=6.4
Q ss_pred CCCCcEEE
Q psy4969 58 LPDGTHFI 65 (66)
Q Consensus 58 d~dG~l~~ 65 (66)
|+||+||+
T Consensus 109 deDGfLyv 116 (130)
T 2zjd_A 109 DEDGFLYM 116 (130)
T ss_dssp CTTSCEEE
T ss_pred CCCCEEEE
Confidence 67888886
No 65
>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A
Probab=24.79 E-value=17 Score=19.23 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.7
Q ss_pred CceEEEEEcCC-Ccccc
Q psy4969 18 KTGELCLKGDV-FLGYR 33 (66)
Q Consensus 18 ~~Gel~i~~~~-~~gY~ 33 (66)
++|+++++++. +.|-+
T Consensus 90 e~gkV~~~S~fI~NGVC 106 (134)
T 1e50_B 90 EAGKVYLKAPMILNGVC 106 (134)
T ss_dssp STTEEEEEEEEEETTEE
T ss_pred CCceEEEEccceecceE
Confidence 56999999987 77654
No 66
>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function, structural genomics, unknown function, pseudo-knot; HET: CME; 1.70A {Saccharomyces cerevisiae}
Probab=24.69 E-value=42 Score=19.26 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=15.4
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
..+.||+.+-|+||-+.+
T Consensus 168 ~V~PGD~I~aD~dGVVvi 185 (240)
T 2c5q_A 168 TICPGDYIAGDNNGIVRI 185 (240)
T ss_dssp EECTTCEEEEETTEEEEE
T ss_pred EECCCCEEEEcCCcEEEe
Confidence 678999999999998765
No 67
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=24.25 E-value=1.1e+02 Score=17.64 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=7.3
Q ss_pred EEEEcCCCCeeCC
Q psy4969 3 RTIIDPVTSVQLP 15 (66)
Q Consensus 3 v~i~d~~~g~~~~ 15 (66)
.+|+|.+ |++++
T Consensus 83 G~V~D~~-G~Pv~ 94 (241)
T 2bum_B 83 GYVRDQF-GRPVK 94 (241)
T ss_dssp EEEEETT-SCBCC
T ss_pred EEEECCC-CCCCC
Confidence 3566755 77665
No 68
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=23.50 E-value=62 Score=16.16 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=17.1
Q ss_pred EEEEEcCCCCeeCC----CCC-ceEEEEEcCC
Q psy4969 2 SRTIIDPVTSVQLP----DGK-TGELCLKGDV 28 (66)
Q Consensus 2 ~v~i~d~~~g~~~~----~~~-~Gel~i~~~~ 28 (66)
+|.|+|-+.|.... +|+ .|.|++.|..
T Consensus 18 ~V~IvNvnNG~RfeTYvI~GerSG~I~lNGAA 49 (97)
T 1uhe_A 18 KVEIVDVNNGERFSTYVILGKKRGEICVNGAA 49 (97)
T ss_dssp EEEEEETTTCCEEEEECEEECSTTCEEEEGGG
T ss_pred EEEEEECCCCceEEEEEEeeccCCeEEEchHH
Confidence 46788876675432 222 5889998754
No 69
>3uji_P Envelope glycoprotein GP160; IG domains, antibody FAB, antigen binding, the third variabl of HIV-1 GP120, immune system; HET: NAG FUC; 1.60A {Hiv-1 M} PDB: 3mlw_P 1f58_P 3mlx_P* 1ai1_P 1acy_P 2b1a_P 3mlt_P
Probab=22.42 E-value=31 Score=11.92 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=4.3
Q ss_pred eEecCce
Q psy4969 48 WLHTGDL 54 (66)
Q Consensus 48 ~~~TGD~ 54 (66)
||.|+++
T Consensus 15 fy~t~~I 21 (23)
T 3uji_P 15 FYTTKNI 21 (26)
T ss_pred EEecccc
Confidence 5667654
No 70
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=22.40 E-value=44 Score=14.53 Aligned_cols=6 Identities=0% Similarity=-0.230 Sum_probs=3.5
Q ss_pred CCeEec
Q psy4969 46 DGWLHT 51 (66)
Q Consensus 46 ~~~~~T 51 (66)
+.||+.
T Consensus 18 g~wYrA 23 (59)
T 1mhn_A 18 GCIYPA 23 (59)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 348873
No 71
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=22.14 E-value=1.2e+02 Score=17.45 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=11.9
Q ss_pred EEEEEcCCCCeeCCCCCceEEEEE
Q psy4969 2 SRTIIDPVTSVQLPDGKTGELCLK 25 (66)
Q Consensus 2 ~v~i~d~~~g~~~~~~~~Gel~i~ 25 (66)
+.+|+|.+ |++++. ..=|||=.
T Consensus 81 ~G~V~D~~-G~Pv~~-A~VEiWqa 102 (238)
T 3t63_M 81 AGRVVDQY-GKPVPN-TLVEMWQA 102 (238)
T ss_dssp EEEEEETT-SCBCTT-CEEEEEEC
T ss_pred EEEEECCC-CCCCCC-CEEEEEec
Confidence 34567755 777653 33455543
No 72
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=21.96 E-value=32 Score=11.87 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=4.2
Q ss_pred eEecCce
Q psy4969 48 WLHTGDL 54 (66)
Q Consensus 48 ~~~TGD~ 54 (66)
||.|+++
T Consensus 15 fy~t~~i 21 (23)
T 3mly_P 15 FYATNGI 21 (26)
T ss_pred EEecccc
Confidence 5666654
No 73
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=21.79 E-value=51 Score=18.95 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.6
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
..+.||+.+-|+||-+.+
T Consensus 164 ~V~PGD~V~aD~dGVVvi 181 (244)
T 3k4i_A 164 TIQPGDLMVCDGSGCVVV 181 (244)
T ss_dssp EECTTCEEEEETTEEEEE
T ss_pred EECCCCEEEEcCCeEEEE
Confidence 578999999999998765
No 74
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=21.79 E-value=60 Score=17.10 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=12.1
Q ss_pred ecCceEEECCCCcEE
Q psy4969 50 HTGDLAYRLPDGTHF 64 (66)
Q Consensus 50 ~TGD~~~~d~dG~l~ 64 (66)
..=|++++|++|.+.
T Consensus 82 ~PLDiiFid~dg~Vv 96 (140)
T 3m7a_A 82 IPLDIIFVGLDRRVM 96 (140)
T ss_dssp SCEEEEEECTTSBEE
T ss_pred cceEEEEECCCCeEE
Confidence 466999999999864
No 75
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=21.68 E-value=74 Score=17.00 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=13.9
Q ss_pred eEecCceEEECCCCcEEE
Q psy4969 48 WLHTGDLAYRLPDGTHFI 65 (66)
Q Consensus 48 ~~~TGD~~~~d~dG~l~~ 65 (66)
-...||++++-+.+.|-|
T Consensus 91 ~~~~GDI~Yy~pg~~LaI 108 (153)
T 2nnz_A 91 VVELGDVAYWIPGKAICL 108 (153)
T ss_dssp CCCTTEEEEETTTTEEEE
T ss_pred cCCCCeEEEeCCCCEEEE
Confidence 357899999987777655
No 76
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=21.64 E-value=61 Score=16.93 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.0
Q ss_pred ecCceEEECCCCcEE
Q psy4969 50 HTGDLAYRLPDGTHF 64 (66)
Q Consensus 50 ~TGD~~~~d~dG~l~ 64 (66)
..=|++++|++|.+.
T Consensus 68 ~PLDiiFld~~g~Vv 82 (136)
T 3pjy_A 68 LPLDMLFIASDGTIR 82 (136)
T ss_dssp SCEEEEEECTTSBEE
T ss_pred cceEEEEECCCCEEE
Confidence 367999999999764
No 77
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=21.04 E-value=83 Score=15.05 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=8.8
Q ss_pred ecCceEEECCCCcEEE
Q psy4969 50 HTGDLAYRLPDGTHFI 65 (66)
Q Consensus 50 ~TGD~~~~d~dG~l~~ 65 (66)
.++..-++++||.+.+
T Consensus 79 ~~~~~y~~~~dG~~~~ 94 (95)
T 1h8g_A 79 ADRPEFTVEPDGLITV 94 (95)
T ss_dssp CCGGGEEECTTSCEEE
T ss_pred EECCEEEECCCeEEEe
Confidence 3444446667776653
No 78
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=20.30 E-value=59 Score=13.02 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=4.5
Q ss_pred ECCCCcEEE
Q psy4969 57 RLPDGTHFI 65 (66)
Q Consensus 57 ~d~dG~l~~ 65 (66)
+|.+|..|+
T Consensus 17 ~~~~G~~Yy 25 (41)
T 1wr7_A 17 IAPNGRPFF 25 (41)
T ss_dssp ECTTSCEEE
T ss_pred EcCCCCEEE
Confidence 344555554
No 79
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=20.30 E-value=50 Score=13.03 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=3.1
Q ss_pred CCCcEEE
Q psy4969 59 PDGTHFI 65 (66)
Q Consensus 59 ~dG~l~~ 65 (66)
++|..||
T Consensus 17 ~~G~~Yy 23 (38)
T 2law_A 17 QDGEIYY 23 (38)
T ss_dssp TTTEEEE
T ss_pred CCCCEEE
Confidence 4444443
Done!