RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4969
(66 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 63.8 bits (154), Expect = 1e-14
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH 63
++D T L + GELC++G + GY N EAT ++D DGWLH+GD+AY D
Sbjct: 370 VVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHF 429
Query: 64 FI 65
FI
Sbjct: 430 FI 431
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 59.5 bits (143), Expect = 4e-13
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 5 IIDPVTSVQLPDGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 62
+ D DGK GE+ LKG + GY EAT+ L DG+ TGD+A +G
Sbjct: 361 VADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGY 420
Query: 63 HFI 65
I
Sbjct: 421 VEI 423
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 52.0 bits (124), Expect = 2e-10
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 5 IIDPVTSVQLPDGKTGELCLKGD---VFLGYRNKVEATKE--MLDDDGWLHTGDLAYRLP 59
++D G L + E ++ +GD A R
Sbjct: 444 LVDNEGHP-QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE 502
Query: 60 DGTHFI 65
DG ++I
Sbjct: 503 DGYYWI 508
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 49.1 bits (116), Expect = 2e-09
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 5 IIDPVTSVQLPDGKT-GELCLKGD---VFLGYRNKVEATKE--MLDDDGWLHTGDLAYRL 58
++DP T +L G L +K + + + G+ TGD A +
Sbjct: 432 VLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKD 491
Query: 59 PDGTHFI 65
DG +I
Sbjct: 492 KDGYIWI 498
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 46.0 bits (108), Expect = 2e-08
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 14 LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDD------DGWLHTGDLAYRLPDGTHFI 65
G+ GELC+ G+ + GY + E T + D + TGD A L DG
Sbjct: 351 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEY 409
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 36.5 bits (83), Expect = 6e-05
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 1 MSRTIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 59
+ + + G+TG L +G GY E +DG+ TGD+
Sbjct: 360 YDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419
Query: 60 DGTHFIW 66
DG +
Sbjct: 420 DGYIVVE 426
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 33.1 bits (74), Expect = 0.001
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 14 LPDGKTGELCLK--GDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 65
+ +G+ GEL + F+GY N+ +AT E L D GW T D+A P+GT I
Sbjct: 345 VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRI 397
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Length = 358
Score = 22.7 bits (47), Expect = 4.9
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 30 LGYRNKVEATKEMLDDDGWLHTG 52
GYR + + L L G
Sbjct: 51 WGYRRRARLSLNYLPKTQQLQMG 73
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 22.1 bits (46), Expect = 6.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 44 DDDGWLHTGDLAYRLPDGTHFI 65
+D H GD + D ++
Sbjct: 43 PEDTLYHLGDFTWHFNDKNEYL 64
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 318
Score = 22.4 bits (48), Expect = 6.8
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 48 WLHTGDLAYRLPDGTHFIW 66
W+ T A L H W
Sbjct: 129 WVRTYKRAEALGMSQHLSW 147
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 303
Score = 22.0 bits (47), Expect = 7.2
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 48 WLHTGDLAYRLPDGTHFIW 66
W T A L G H W
Sbjct: 130 WGRTYLRAQALGMGKHTAW 148
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 280
Score = 21.6 bits (46), Expect = 9.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 48 WLHTGDLAYRLPDGTHFIW 66
L ++ +L G H +
Sbjct: 109 ALREVEICRKLGIGFHVPF 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.142 0.456
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,490
Number of extensions: 9970
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 19
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)