Diaphorina citri psyllid: psy496


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MHAFYAQSITYRLKEDLAGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRTLKRSETQQYPNDQQHT
ccccccccEEEEEEccccccccccccHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHHccccccEEEECccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccCEEEECccHHHHHHHccccccccccEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHccccccccEEEccccccccccccHHHHHHHHHHHccccccccccccccc
MHAFYAQSITYRLKEDLAGCGKTTQVPQFILDDE**RNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRTL***************
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MHAFYAQSITYRLKEDLAGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRTLKRSETQQYPNDQQHT

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable ATP-dependent RNA helicase DHX36 Plays a role in degradation and deadenylation of mRNAs containing in their 3'-UTR the consensus ARE sequence element. May function in sex development and spermatogenesis.confidentQ9H2U1
Probable ATP-dependent RNA helicase DHX36 Plays a role in degradation and deadenylation of mRNAs containing in their 3'-UTR the consensus ARE sequence element. May function in sex development and spermatogenesis.confidentQ8VHK9

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0034605 [BP]cellular response to heatprobableGO:0009628, GO:0051716, GO:0050896, GO:0009987, GO:0008150, GO:0006950, GO:0044763, GO:0033554, GO:0009266, GO:0009408, GO:0044699
GO:0070937 [CC]CRD-mediated mRNA stability complexprobableGO:0043234, GO:0005737, GO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0071011 [CC]precatalytic spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0071013 [CC]catalytic step 2 spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0003725 [MF]double-stranded RNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0000805 [CC]X chromosomeprobableGO:0043232, GO:0044464, GO:0000803, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0043228, GO:0044424, GO:0005694, GO:0043226
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0000785 [CC]chromatinprobableGO:0005575, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0043228, GO:0044424, GO:0044427, GO:0005694, GO:0043226, GO:0044422
GO:0005813 [CC]centrosomeprobableGO:0005856, GO:0005575, GO:0015630, GO:0043232, GO:0044464, GO:0005623, GO:0005815, GO:0044446, GO:0043229, GO:0043228, GO:0044430, GO:0044424, GO:0005622, GO:0043226, GO:0044422
GO:0004004 [MF]ATP-dependent RNA helicase activityprobableGO:0016787, GO:0016818, GO:0008026, GO:0042623, GO:0003824, GO:0017111, GO:0016817, GO:0004386, GO:0070035, GO:0003724, GO:0003674, GO:0016887, GO:0008186, GO:0016462
GO:0002151 [MF]G-quadruplex RNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0005739 [CC]mitochondrionprobableGO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0005700 [CC]polytene chromosomeprobableGO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0043228, GO:0044424, GO:0005694, GO:0043226
GO:0010468 [BP]regulation of gene expressionprobableGO:0060255, GO:0008150, GO:0065007, GO:0050789, GO:0019222
GO:0005665 [CC]DNA-directed RNA polymerase II, core complexprobableGO:0030880, GO:0000428, GO:0031974, GO:0043229, GO:0016591, GO:0043227, GO:0043226, GO:0005575, GO:0031981, GO:0005634, GO:0005654, GO:0044451, GO:0055029, GO:0043234, GO:0032991, GO:0043231, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0070013, GO:0044428, GO:0044424, GO:0044422
GO:0003682 [MF]chromatin bindingprobableGO:0003674, GO:0005488

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3LLM, chain A
Confidence level:very confident
Coverage over the Query: 45-58,69-233
View the alignment between query and template
View the model in PyMOL
Template: 2XAU, chain A
Confidence level:very confident
Coverage over the Query: 45-291
View the alignment between query and template
View the model in PyMOL
Template: 2DB3, chain A
Confidence level:confident
Coverage over the Query: 6-59,70-288
View the alignment between query and template
View the model in PyMOL