BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4972
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 144/237 (60%), Gaps = 4/237 (1%)
Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRI 173
+D H + SLE+LY G+T KL L K ++C C G+G K GA C SC G G K R
Sbjct: 12 KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 174 IGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF 233
+GP M Q+ Q C C G G++++ KDRC SC G+K + +K+LEV+V+ GMK+ Q+I F
Sbjct: 72 MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 234 RGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQ 293
+GE DQ PD PGDV+ ++ ++PH F+R G +LV I L A+ G ++H+
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 294 LLITHPPGEVIKPEDIKGIVGEGMPIYK-NPYEKGTLYIKFDVQFPESYFNNDAKLK 349
L + PGEVI P K I G+GMPI K Y G L IKF ++ PE++F ++ LK
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY--GNLIIKFTIKDPENHFTSEENLK 245
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
K+L + V KG KE KI F EGDQ + P D++ VL+ KPH+ F+R G +++ I+
Sbjct: 52 KILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARIS 111
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
L EALCG T + LD R + + +VI+P + + GEG+P+ K P ++G L I+F+
Sbjct: 112 LREALCGCTVNVPTLDGRTIPVVF--KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE 169
Query: 335 VQFPE 339
V FPE
Sbjct: 170 VIFPE 174
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
K+L + V KG KE KI F EGDQ + P D++ VL+ KPH+ F+R G +++ I+
Sbjct: 45 KILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARIS 104
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
L EALCG T + LD R + + +VI+P + + GEG+P+ K P ++G L I+F+
Sbjct: 105 LREALCGCTVNVPTLDGRTIPVVF--KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE 162
Query: 335 VQFPE 339
V FPE
Sbjct: 163 VIFPE 167
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
K+L + V KG KE KI F EGDQ + P D++ VL+ KPH+ F+R G +++ I+
Sbjct: 43 KILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARIS 102
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
L EALCG T + LD R + + +VI+P + + GEG+P+ K P ++G L I+F+
Sbjct: 103 LREALCGCTVNVPTLDGRTIPVVF--KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE 160
Query: 335 VQFPE 339
V FPE
Sbjct: 161 VIFPE 165
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 216 VLEVNVDKGMKEMQKIYFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
++EV + G K+ K+ + GEGDQ+ P PGD++++++ K H RF R +L+ TI
Sbjct: 43 IVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIP 102
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
L AL GFT + LD+R L I P E++ P+ K + EG PI P +KG L ++FD
Sbjct: 103 LVRALTGFTCPVTTLDNRNLQI--PIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFD 160
Query: 335 VQFPESYFNNDAKL 348
+ FP+S KL
Sbjct: 161 ICFPKSLTPEQKKL 174
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%)
Query: 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
+T Y+VLGV ASD E+KKAYRK+A +FHPDKNP+ ++FK+IS AYEVLSDEKKR
Sbjct: 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 63 YDRYG 67
YD+ G
Sbjct: 67 YDQGG 71
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
+ +T Y+VLGV +A+ +E+KKAYRKLA ++HPDKNP G+KFK+IS AYEVLSD KKR
Sbjct: 3 VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKR 62
Query: 61 ATYDRYGIQ 69
YD+ G Q
Sbjct: 63 ELYDKGGEQ 71
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEKKRATYD 64
Y+ LG+++ ASD+EIK+AYR+ A +HPDKN E G +KFKEI+ AY+VLSD +KR +D
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65
Query: 65 RYGIQGIK 72
RYG +G+K
Sbjct: 66 RYGEEGLK 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 81.3 bits (199), Expect = 8e-16, Method: Composition-based stats.
Identities = 44/65 (67%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRAT 62
YEVLGV SAS ++IKKAYRKLA +HPDKNP EA KFK +S AYEVLSD KKR+
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 63 YDRYG 67
YDR G
Sbjct: 72 YDRAG 76
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 81.3 bits (199), Expect = 8e-16, Method: Composition-based stats.
Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKR 60
D Y VLGVS++AS +IKKAY+KLA+E+HPDKN P A D+F +IS AYE+LS+E+KR
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKR 75
Query: 61 ATYDRYG 67
YD YG
Sbjct: 76 TNYDHYG 82
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 55/70 (78%)
Query: 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
+TKLY++LGVS SA++QE+KK YRK A ++HPDK +KFKEIS A+E+L+D +KR
Sbjct: 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66
Query: 63 YDRYGIQGIK 72
YD+YG++ +
Sbjct: 67 YDQYGLEAAR 76
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEK 58
A YE+LGVSK+A ++EI+KAY++LA ++HPD+N EA KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 59 KRATYDRYG 67
KRA YD+YG
Sbjct: 61 KRAAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEK 58
A YE+LGVSK+A ++EI+KAY++LA ++HPD+N EA KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 59 KRATYDRYGIQGIKE-----KAGGGGADFSD 84
KRA YD+YG ++ GGGADFSD
Sbjct: 61 KRAAYDQYGHAAFEQGGMGGGGFGGGADFSD 91
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEK 58
A YE+LGVSK+A ++EI+KAY++LA ++HPD+N EA KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 59 KRATYDRYGIQGIKE-----KAGGGGADFSD 84
KRA YD+YG ++ GGGADFSD
Sbjct: 61 KRAAYDQYGHAAFEQGGMGGGGFGGGADFSD 91
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 79.7 bits (195), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 6 LYEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRAT 62
LY VLG+ K+A+ +IKK+YRKLA ++HPDK NPEA DKFKEI+ A+ +L+D KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 63 YDRYGIQGI 71
YD+YG G+
Sbjct: 79 YDKYGSLGL 87
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKK 59
D Y +LGVSK+AS +EI++A++KLA + HPDK NP A F +I+ AYEVL DE
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 60 RATYDRYGIQGIKEKAGGGGADFS 83
R YD+YG +G+++ GG +S
Sbjct: 80 RKKYDKYGEKGLEDNQGGQYESWS 103
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 78.6 bits (192), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 12/85 (14%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRAT 62
YE+L V +SAS +IKKAYR+ A ++HPDKNP+ A KFKE++ AYEVLSD+ KR
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 63 YDRYGIQGI--------KEKAGGGG 79
YDRYG +G+ + +AG GG
Sbjct: 65 YDRYGREGLTGTGTGPSRAEAGSGG 89
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 77.4 bits (189), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRAT 62
YEVL V + AS + IKKAYRKLA ++HPDKNP EA +FK+++ AYEVLSD KKR
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 63 YDRYG 67
YDRYG
Sbjct: 72 YDRYG 76
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Query: 6 LYEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRAT 62
Y +LGVSK+AS +EI++A++KLA + HPDK NP A F +I+ AYEVL DE R
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 63 YDRYGIQGIKEKAGG 77
YD+YG +G+++ GG
Sbjct: 64 YDKYGEKGLEDNQGG 78
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 75.1 bits (183), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 2/63 (3%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
YE+LGVS+ ASD+++KKAYR+LA +FHPDKN P A + FK I AY VLS+ +KR YD
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69
Query: 65 RYG 67
++G
Sbjct: 70 QFG 72
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 212 SVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVI-IVLEQKPHDRFQRQGINLVTT 270
S K +++ + G K KI ++ +GD P + V+++K H F+R G +L+ T
Sbjct: 33 SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYT 92
Query: 271 ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY 330
++ E+L GF+K I+ +D R L ++ + ++P G+GMP KNP ++G L
Sbjct: 93 LPLSFKESLLGFSKTIQTIDGRTLPLSR--VQPVQPSQTSTYPGQGMPTPKNPSQRGNLI 150
Query: 331 IKFDVQFPESYFNNDAK 347
+K+ V +P S NDA+
Sbjct: 151 VKYKVDYPISL--NDAQ 165
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 212 SVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVI-IVLEQKPHDRFQRQGINLVTT 270
S K +++ + G K KI ++ +GD P + V+++K H F+R G +L+ T
Sbjct: 33 SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYT 92
Query: 271 ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY 330
++ E+L GF+K I+ +D R L ++ + ++P G+GMP KNP ++G L
Sbjct: 93 LPLSFKESLLGFSKTIQTIDGRTLPLSR--VQPVQPSQTSTYPGQGMPTPKNPSQRGNLI 150
Query: 331 IKFDVQFPESYFNNDAK 347
+K+ V +P S NDA+
Sbjct: 151 VKYKVDYPISL--NDAQ 165
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 3/65 (4%)
Query: 6 LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEKKRAT 62
Y++LGV ++AS +EIKKAY +LAK++HPD N P+A +KF +++ AYEVLSDE KR
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 63 YDRYG 67
YD YG
Sbjct: 69 YDAYG 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
Y++LGV KSAS+++IKKA+ KLA ++HPDKN P+A KF+EI+ AYE LSD +R YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
Query: 65 RYGIQGIKEKAGGGG 79
G G G
Sbjct: 70 TLGHSAFTSGKGQSG 84
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 64.3 bits (155), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
Y ++GV + + IK AYR+LA+++HPD K P+A +FKE++ A+EVLSDE++RA YD
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 67
Query: 65 R 65
+
Sbjct: 68 Q 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
Y +LGV + + IK AYR+LA+++HPD K +A KFK+++ A+EVL DE++RA YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
Query: 65 R 65
+
Sbjct: 91 Q 91
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETI 273
K L V + G+ + Q+I +G+G + P GD+ +V+ PH F G NL +
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 274 TLTEALCGFTKVIKHLDDRQLLITHPPG 301
EA G + L + +L+T PPG
Sbjct: 241 APWEAALGAKVTVPTLKE-SILLTVPPG 267
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
F+R G +LV I L A+ G ++H+ L + PGEVI P K I G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 320 YKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
K G L IKF ++FPE++F ++ LK
Sbjct: 62 PKY-GGYGNLIIKFTIKFPENHFTSEENLK 90
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKR 60
T LY++LGV +A+ +IK AY + +HPD+N EA ++F IS AY VL R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 61 ATYDR 65
YDR
Sbjct: 77 RKYDR 81
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 7 YEVLGVSKSASD-QEIKKAYRKLAKEFHPD--KNPE----AGDKFKEISFAYEVLSDEKK 59
Y+VL V++ D Q++ KAYR LA++ HPD KN E A ++F+ I+ AYE L D++
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 60 RATYDRY 66
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDK------NPEAGDKFKEISFAYEVLSDEKKR 60
Y++LGV ++A QEI KAYRKLA ++HPD +A KF +I+ A EVLSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 61 ATYD 64
+D
Sbjct: 445 KKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDK------NPEAGDKFKEISFAYEVLSDEKKR 60
Y++LGV ++A QEI KAYRKLA ++HPD +A KF +I+ A EVLSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 61 ATYD 64
+D
Sbjct: 445 KKFD 448
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRATY 63
Y +LG + +S ++I ++ A E HPDK NP+A + F+++ A E+L++E+ RA Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82
Query: 64 DRY 66
D +
Sbjct: 83 DHW 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAY 51
M Y +LG SA+ ++K+ Y+KL +HPDK E KF EI A+
Sbjct: 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66
Query: 52 EVLSDEKKRATYD 64
++L +E+ + YD
Sbjct: 67 KILGNEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 6 LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAYEVLSD 56
Y +LG SA+ ++K+ Y+KL +HPDK E KF EI A+++L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 57 EKKRATYD 64
E+ + YD
Sbjct: 78 EETKKKYD 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDK--NPEAGDKFKEISFAYEVL 54
+++LGV AS E+ KAYRKLA HPDK P + D FK + A L
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
+L ++LG+ +SA + ++KAY K KEFHPDK + +K K+++ Y+ + D K A
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVKYAH 67
Query: 63 YDRYG 67
+G
Sbjct: 68 QPDFG 72
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 5 KLYEVLGVSKSASDQ--EIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
+L ++LG+ +SA ++KAY K KEFHPDK + +K K+++ Y+ + D K A
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVKYAH 70
Query: 63 YDRYG 67
+G
Sbjct: 71 QPDFG 75
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 21 IKKAYRKLAKEFHPDKNPEAGDKFK--------EISFAYEVLSDEKKRATYDRYGIQGIK 72
+ +R L K FHPD A ++ + +I+ AY+ L D +RA Y +QGI+
Sbjct: 23 LSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEY-LLSLQGIE 81
Query: 73 EKA 75
A
Sbjct: 82 XNA 84
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 6 LYEVLGVSKSA---SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEI 47
L EV V + A + E KK R+L ++HPDKNPE D E+
Sbjct: 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEV 59
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 21 IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATY 63
++K YR+L + HPD + ++ ++ AY L D +R+ Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 21 IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATY 63
++K YR+L + HPD + ++ ++ AY L D +R+ Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 178 MTQQIQARCSDC---------QGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEM 228
+T QI A+ SD +G EV++ G A VKKV+ ++ + + ++
Sbjct: 15 VTSQIHAKGSDLAKLXQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKV 74
Query: 229 QKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVT 269
+ + G G QQ + GD EQ P F + ++VT
Sbjct: 75 ARAFIEGNGHQQVEYVQGDA----EQXP---FTDERFHIVT 108
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 143 CSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQ---QIQARCSDCQGEGEVMNE 198
C C+G G+K G TC +C G G M Q +Q C CQG G ++
Sbjct: 14 CDVCHGSGAKPGTQPQTCPTCHGSGQV--------QMRQGFFAVQQTCPHCQGRGTLI-- 63
Query: 199 KDRCGSCAG 207
KD C C G
Sbjct: 64 KDPCNKCHG 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,496,904
Number of Sequences: 62578
Number of extensions: 436010
Number of successful extensions: 1035
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 63
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)