Query psy4972
Match_columns 349
No_of_seqs 268 out of 2154
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:33:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.6E-92 3.5E-97 664.9 35.9 332 1-349 1-342 (371)
2 PTZ00037 DnaJ_C chaperone prot 100.0 3.1E-85 6.6E-90 637.6 36.2 332 1-349 25-358 (421)
3 PRK14296 chaperone protein Dna 100.0 1.3E-83 2.9E-88 620.3 36.6 331 1-348 1-352 (372)
4 PRK14288 chaperone protein Dna 100.0 2.1E-81 4.6E-86 604.9 36.2 327 3-348 2-336 (369)
5 PRK14286 chaperone protein Dna 100.0 2.7E-80 6E-85 597.8 36.1 333 1-348 1-348 (372)
6 PRK14298 chaperone protein Dna 100.0 3.2E-80 7E-85 597.8 35.7 329 3-348 4-342 (377)
7 PRK14287 chaperone protein Dna 100.0 6.3E-80 1.4E-84 595.1 36.2 332 1-348 1-339 (371)
8 PRK14276 chaperone protein Dna 100.0 9.6E-80 2.1E-84 596.0 36.1 332 1-348 1-347 (380)
9 PRK14278 chaperone protein Dna 100.0 1.9E-79 4.1E-84 593.1 37.4 331 4-348 3-341 (378)
10 PRK14280 chaperone protein Dna 100.0 2.2E-79 4.7E-84 592.8 37.0 332 1-348 1-344 (376)
11 PRK14277 chaperone protein Dna 100.0 8.5E-79 1.9E-83 590.5 36.6 334 2-348 3-356 (386)
12 PRK14285 chaperone protein Dna 100.0 1.6E-78 3.5E-83 584.1 35.4 328 3-349 2-345 (365)
13 PRK14282 chaperone protein Dna 100.0 3.1E-78 6.8E-83 583.7 37.1 334 1-348 1-354 (369)
14 PRK14297 chaperone protein Dna 100.0 3.4E-78 7.3E-83 585.6 36.4 335 1-349 1-350 (380)
15 PRK14281 chaperone protein Dna 100.0 7.8E-78 1.7E-82 585.3 36.5 338 3-349 2-364 (397)
16 PRK14279 chaperone protein Dna 100.0 1.1E-77 2.4E-82 582.9 34.9 332 3-348 8-369 (392)
17 PRK14301 chaperone protein Dna 100.0 2.9E-77 6.3E-82 576.9 35.1 329 1-348 1-341 (373)
18 KOG0712|consensus 100.0 3.7E-78 8E-83 560.4 27.4 330 1-348 1-330 (337)
19 PRK14284 chaperone protein Dna 100.0 4E-77 8.7E-82 579.7 34.7 330 4-348 1-357 (391)
20 PRK14294 chaperone protein Dna 100.0 7.6E-77 1.7E-81 573.5 35.8 330 1-348 1-341 (366)
21 PRK14295 chaperone protein Dna 100.0 9E-77 2E-81 576.0 35.2 333 3-348 8-363 (389)
22 PRK10767 chaperone protein Dna 100.0 2.6E-76 5.6E-81 571.4 35.3 327 1-348 1-339 (371)
23 PRK14291 chaperone protein Dna 100.0 1E-75 2.3E-80 568.2 36.1 329 3-344 2-351 (382)
24 TIGR02349 DnaJ_bact chaperone 100.0 1.1E-75 2.4E-80 564.3 35.6 330 5-348 1-344 (354)
25 PRK14283 chaperone protein Dna 100.0 7.8E-76 1.7E-80 568.7 34.7 335 1-348 2-347 (378)
26 PRK14290 chaperone protein Dna 100.0 2.2E-75 4.9E-80 563.0 37.3 332 4-348 3-347 (365)
27 PRK14300 chaperone protein Dna 100.0 1.9E-75 4.1E-80 564.5 36.5 331 4-349 3-344 (372)
28 PRK14293 chaperone protein Dna 100.0 8.3E-75 1.8E-79 560.8 36.4 337 3-348 2-345 (374)
29 PRK14289 chaperone protein Dna 100.0 1.7E-74 3.8E-79 561.1 36.4 340 1-349 2-356 (386)
30 PRK14292 chaperone protein Dna 100.0 1.2E-73 2.5E-78 552.9 36.5 331 3-348 1-339 (371)
31 PRK14299 chaperone protein Dna 100.0 1.9E-58 4.2E-63 432.5 29.5 260 1-348 1-277 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.6E-56 3.5E-61 422.5 30.6 272 1-348 1-284 (306)
33 KOG0713|consensus 100.0 4.7E-45 1E-49 335.0 11.6 306 2-340 14-324 (336)
34 TIGR03835 termin_org_DnaJ term 100.0 1.5E-41 3.2E-46 338.7 29.0 124 211-340 693-817 (871)
35 KOG0715|consensus 100.0 1.8E-40 3.9E-45 308.6 15.6 244 3-277 42-288 (288)
36 KOG0714|consensus 99.9 3.7E-23 8E-28 193.7 18.0 254 3-319 2-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.8 2.9E-21 6.3E-26 147.0 6.3 80 266-349 1-80 (81)
38 PTZ00341 Ring-infected erythro 99.8 3.7E-19 8.1E-24 182.6 8.1 72 2-73 571-644 (1136)
39 KOG0716|consensus 99.8 2.3E-19 5E-24 160.6 5.2 70 3-72 30-102 (279)
40 KOG0718|consensus 99.8 5.7E-19 1.2E-23 167.8 5.9 74 3-76 8-87 (546)
41 KOG0691|consensus 99.8 8.1E-19 1.8E-23 162.3 6.8 89 3-95 4-95 (296)
42 KOG0717|consensus 99.7 1.3E-18 2.9E-23 165.3 6.1 71 2-72 6-80 (508)
43 COG2214 CbpA DnaJ-class molecu 99.7 8.3E-17 1.8E-21 144.2 14.7 191 2-267 4-227 (237)
44 PF00226 DnaJ: DnaJ domain; I 99.7 7.7E-18 1.7E-22 122.2 5.5 60 5-64 1-64 (64)
45 KOG0719|consensus 99.7 1.4E-17 3.1E-22 145.6 6.4 67 3-69 13-84 (264)
46 PHA03102 Small T antigen; Revi 99.7 2.5E-17 5.4E-22 138.5 6.7 85 4-94 5-91 (153)
47 KOG0624|consensus 99.7 2.8E-17 6.1E-22 151.8 6.5 70 2-72 392-467 (504)
48 smart00271 DnaJ DnaJ molecular 99.6 8E-16 1.7E-20 110.0 6.0 55 4-58 1-59 (60)
49 cd06257 DnaJ DnaJ domain or J- 99.6 1.9E-15 4.2E-20 106.0 6.2 52 5-56 1-55 (55)
50 KOG0721|consensus 99.6 1.5E-15 3.3E-20 131.9 6.1 68 2-69 97-167 (230)
51 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 4.1E-14 8.8E-19 103.1 7.5 65 143-209 1-66 (66)
52 COG0484 DnaJ DnaJ-class molecu 99.5 8.7E-14 1.9E-18 132.1 7.1 119 139-270 158-346 (371)
53 PRK01356 hscB co-chaperone Hsc 99.4 1.3E-13 2.9E-18 118.6 6.8 64 3-66 1-72 (166)
54 KOG0550|consensus 99.4 9.2E-14 2E-18 131.4 6.2 65 2-66 371-439 (486)
55 PRK05014 hscB co-chaperone Hsc 99.4 3E-13 6.4E-18 117.1 6.7 62 4-65 1-72 (171)
56 PTZ00100 DnaJ chaperone protei 99.4 2E-13 4.2E-18 109.2 5.0 54 1-55 62-115 (116)
57 KOG0722|consensus 99.4 8E-14 1.7E-18 123.6 3.1 64 3-66 32-97 (329)
58 PRK00294 hscB co-chaperone Hsc 99.4 4.5E-13 9.8E-18 115.8 7.3 65 1-65 1-75 (173)
59 PRK14282 chaperone protein Dna 99.4 3.4E-13 7.4E-18 130.8 7.2 56 216-271 304-360 (369)
60 PRK03578 hscB co-chaperone Hsc 99.4 1E-12 2.2E-17 114.0 7.0 63 3-65 5-77 (176)
61 PRK14290 chaperone protein Dna 99.4 9.7E-13 2.1E-17 127.5 6.5 56 216-271 297-353 (365)
62 PRK14294 chaperone protein Dna 99.3 1E-12 2.2E-17 127.4 6.0 57 216-272 291-348 (366)
63 PRK14285 chaperone protein Dna 99.3 2.6E-12 5.5E-17 124.4 8.6 55 216-270 294-349 (365)
64 PRK14298 chaperone protein Dna 99.3 1.1E-12 2.3E-17 127.5 5.8 56 216-271 292-348 (377)
65 KOG0720|consensus 99.3 8.8E-13 1.9E-17 126.0 4.9 64 3-66 234-299 (490)
66 PRK10767 chaperone protein Dna 99.3 4.1E-12 8.8E-17 123.5 6.5 56 216-271 289-345 (371)
67 PRK14279 chaperone protein Dna 99.3 6.1E-12 1.3E-16 122.8 7.8 118 139-269 189-373 (392)
68 PRK14300 chaperone protein Dna 99.3 7.4E-12 1.6E-16 121.6 8.0 55 216-270 293-348 (372)
69 PRK14301 chaperone protein Dna 99.3 6.9E-12 1.5E-16 121.8 7.5 55 216-270 291-346 (373)
70 PHA02624 large T antigen; Prov 99.2 5.7E-12 1.2E-16 126.2 5.5 59 4-63 11-71 (647)
71 PRK14284 chaperone protein Dna 99.2 1.3E-11 2.9E-16 120.6 7.9 56 216-271 307-363 (391)
72 PRK14288 chaperone protein Dna 99.2 1.9E-11 4.1E-16 118.6 8.6 54 216-269 286-340 (369)
73 PRK09430 djlA Dna-J like membr 99.2 6.2E-12 1.4E-16 116.5 4.6 54 3-56 199-262 (267)
74 PRK14287 chaperone protein Dna 99.2 1.4E-11 3E-16 119.6 7.2 56 216-271 289-345 (371)
75 TIGR02349 DnaJ_bact chaperone 99.2 1.8E-11 3.8E-16 118.4 7.4 53 216-268 294-347 (354)
76 PRK14295 chaperone protein Dna 99.2 2.1E-11 4.6E-16 118.9 7.9 55 216-270 314-368 (389)
77 PRK14278 chaperone protein Dna 99.2 3E-11 6.5E-16 117.5 8.8 54 216-269 291-345 (378)
78 PRK14293 chaperone protein Dna 99.2 2.4E-11 5.1E-16 118.2 8.0 56 216-271 294-351 (374)
79 PRK14286 chaperone protein Dna 99.2 3E-11 6.5E-16 117.3 8.0 54 216-269 298-352 (372)
80 PRK14281 chaperone protein Dna 99.2 2.3E-11 5E-16 119.1 6.9 54 216-269 313-367 (397)
81 PRK14276 chaperone protein Dna 99.2 3.2E-11 6.9E-16 117.5 7.6 54 216-269 297-351 (380)
82 COG5407 SEC63 Preprotein trans 99.2 1.4E-11 3.1E-16 117.2 4.2 67 4-70 98-172 (610)
83 PRK14280 chaperone protein Dna 99.2 4.9E-11 1.1E-15 116.0 8.0 54 216-269 294-348 (376)
84 PRK14297 chaperone protein Dna 99.2 6.5E-11 1.4E-15 115.4 8.1 53 216-268 299-352 (380)
85 PRK14289 chaperone protein Dna 99.1 6.3E-11 1.4E-15 115.8 7.0 52 216-267 305-357 (386)
86 PRK14296 chaperone protein Dna 99.1 8.6E-11 1.9E-15 114.0 7.9 53 216-268 301-355 (372)
87 PRK14292 chaperone protein Dna 99.1 9.6E-11 2.1E-15 113.9 7.2 54 216-269 289-343 (371)
88 PRK14277 chaperone protein Dna 99.1 1.2E-10 2.6E-15 113.7 7.6 54 216-269 306-360 (386)
89 PTZ00037 DnaJ_C chaperone prot 99.1 1.2E-10 2.5E-15 114.4 7.0 53 216-268 302-360 (421)
90 PRK14291 chaperone protein Dna 99.1 4E-10 8.7E-15 109.9 9.6 43 216-258 303-346 (382)
91 PRK14283 chaperone protein Dna 99.1 3.2E-10 7E-15 110.4 7.9 55 216-270 297-352 (378)
92 PRK01773 hscB co-chaperone Hsc 99.0 1.4E-09 3E-14 94.1 6.8 63 3-65 1-73 (173)
93 TIGR00714 hscB Fe-S protein as 98.9 2.6E-09 5.6E-14 91.2 6.2 51 16-66 3-61 (157)
94 PRK14299 chaperone protein Dna 98.9 9E-09 1.9E-13 96.9 9.0 71 260-340 125-195 (291)
95 PLN03165 chaperone protein dna 98.8 8.8E-09 1.9E-13 81.9 6.6 61 139-213 40-100 (111)
96 COG5269 ZUO1 Ribosome-associat 98.8 8.1E-09 1.7E-13 92.8 6.1 65 3-67 42-114 (379)
97 PF01556 CTDII: DnaJ C termina 98.8 7.7E-09 1.7E-13 78.5 4.1 49 215-263 27-77 (81)
98 KOG1150|consensus 98.7 1.5E-08 3.2E-13 87.3 5.0 60 3-62 52-115 (250)
99 PRK10266 curved DNA-binding pr 98.7 8E-08 1.7E-12 91.1 8.9 75 262-340 115-202 (306)
100 KOG1789|consensus 98.6 5.8E-08 1.2E-12 100.8 5.2 56 1-56 1278-1337(2235)
101 TIGR02642 phage_xxxx uncharact 98.4 4.6E-07 1E-11 78.8 5.3 51 183-234 99-149 (186)
102 KOG0568|consensus 98.2 1.6E-06 3.5E-11 76.5 4.3 54 4-57 47-103 (342)
103 KOG0723|consensus 98.2 2.1E-06 4.6E-11 66.7 4.4 56 1-57 53-108 (112)
104 KOG0712|consensus 98.0 1.2E-05 2.5E-10 76.1 7.0 43 216-258 280-324 (337)
105 COG1107 Archaea-specific RecJ- 97.8 8.4E-06 1.8E-10 80.8 2.8 12 184-195 69-80 (715)
106 TIGR03835 termin_org_DnaJ term 97.8 9.1E-05 2E-09 76.3 9.6 86 4-92 2-89 (871)
107 KOG2813|consensus 97.8 2.9E-05 6.3E-10 71.7 4.8 60 140-220 198-277 (406)
108 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.6 3.3E-05 7.2E-10 56.1 1.7 42 139-193 14-66 (66)
109 COG1107 Archaea-specific RecJ- 97.2 0.00041 8.9E-09 69.2 4.3 73 141-214 3-83 (715)
110 KOG2813|consensus 97.0 0.00037 8E-09 64.5 2.5 80 125-214 169-260 (406)
111 KOG3192|consensus 96.6 0.0022 4.8E-08 53.6 3.9 63 3-65 7-79 (168)
112 PLN03165 chaperone protein dna 96.4 0.0019 4.1E-08 51.6 2.2 39 142-196 54-99 (111)
113 TIGR02642 phage_xxxx uncharact 95.9 0.0053 1.1E-07 53.6 2.3 29 140-168 99-127 (186)
114 COG1076 DjlA DnaJ-domain-conta 94.8 0.022 4.7E-07 49.5 2.7 62 5-66 2-73 (174)
115 PF03656 Pam16: Pam16; InterP 94.7 0.039 8.4E-07 45.3 3.9 54 4-58 58-111 (127)
116 KOG0431|consensus 93.0 0.11 2.4E-06 51.9 4.3 28 11-38 395-422 (453)
117 KOG2824|consensus 92.7 0.17 3.6E-06 46.6 4.5 65 123-206 216-280 (281)
118 COG1076 DjlA DnaJ-domain-conta 91.2 0.083 1.8E-06 45.9 0.8 34 4-37 113-146 (174)
119 KOG0715|consensus 90.4 0.35 7.5E-06 45.5 4.3 34 293-337 234-267 (288)
120 cd03031 GRX_GRX_like Glutaredo 90.3 0.27 5.8E-06 41.5 3.1 38 124-169 86-123 (147)
121 PF11833 DUF3353: Protein of u 89.2 0.74 1.6E-05 40.7 5.1 40 13-57 1-40 (194)
122 PF13446 RPT: A repeated domai 89.1 0.39 8.4E-06 34.1 2.7 48 1-56 2-49 (62)
123 smart00709 Zpr1 Duplicated dom 86.3 3.2 6.8E-05 35.6 7.1 20 216-235 81-100 (160)
124 KOG2824|consensus 85.5 0.81 1.7E-05 42.2 3.2 40 157-212 230-275 (281)
125 TIGR00310 ZPR1_znf ZPR1 zinc f 84.8 3.4 7.5E-05 36.4 6.8 20 216-235 80-100 (192)
126 PRK04023 DNA polymerase II lar 84.3 1.1 2.4E-05 48.2 4.1 65 123-210 609-674 (1121)
127 KOG0724|consensus 83.5 1.1 2.5E-05 42.9 3.5 51 16-66 4-61 (335)
128 PRK14714 DNA polymerase II lar 82.7 1.9 4.1E-05 47.7 5.1 69 123-210 643-720 (1337)
129 cd03031 GRX_GRX_like Glutaredo 82.2 1.5 3.3E-05 36.9 3.4 39 157-211 100-145 (147)
130 TIGR00630 uvra excinuclease AB 80.1 1.2 2.6E-05 48.6 2.5 33 158-194 738-770 (924)
131 PRK00349 uvrA excinuclease ABC 73.0 3.3 7.1E-05 45.4 3.5 33 158-194 740-772 (943)
132 TIGR00630 uvra excinuclease AB 71.7 1.9 4.1E-05 47.0 1.4 33 183-215 736-775 (924)
133 PRK00635 excinuclease ABC subu 68.8 3.2 7E-05 48.3 2.4 33 158-194 1609-1641(1809)
134 COG0178 UvrA Excinuclease ATPa 68.1 5.4 0.00012 42.5 3.6 13 158-170 732-744 (935)
135 TIGR00340 zpr1_rel ZPR1-relate 67.2 14 0.00031 31.7 5.5 20 216-235 78-98 (163)
136 PF03833 PolC_DP2: DNA polymer 64.4 2.2 4.7E-05 45.3 0.0 64 124-210 638-703 (900)
137 smart00709 Zpr1 Duplicated dom 63.7 59 0.0013 27.8 8.6 26 282-314 75-100 (160)
138 PF03589 Antiterm: Antitermina 60.4 1.9 4.1E-05 33.6 -1.0 37 157-195 6-44 (95)
139 PF07709 SRR: Seven Residue Re 57.4 6.6 0.00014 19.2 1.0 13 43-55 2-14 (14)
140 PF12991 DUF3875: Domain of un 53.8 8.1 0.00018 26.5 1.3 23 325-347 26-48 (54)
141 PRK00635 excinuclease ABC subu 52.4 5.7 0.00012 46.3 0.7 33 183-215 1607-1646(1809)
142 PRK03564 formate dehydrogenase 51.2 15 0.00033 34.9 3.2 20 185-206 214-233 (309)
143 PF04246 RseC_MucC: Positive r 50.0 21 0.00045 29.3 3.5 23 214-236 41-63 (135)
144 PF14687 DUF4460: Domain of un 49.3 36 0.00077 27.3 4.6 43 14-56 4-53 (112)
145 PF12434 Malate_DH: Malate deh 48.9 24 0.00052 20.6 2.5 18 17-34 9-26 (28)
146 COG1198 PriA Primosomal protei 48.3 18 0.00039 38.5 3.6 61 129-208 419-484 (730)
147 PRK14559 putative protein seri 47.4 14 0.0003 38.8 2.5 49 141-208 2-50 (645)
148 PF07739 TipAS: TipAS antibiot 47.1 41 0.0009 26.4 4.8 52 11-68 51-104 (118)
149 PF03367 zf-ZPR1: ZPR1 zinc-fi 47.1 30 0.00065 29.6 4.1 35 157-191 2-38 (161)
150 COG5552 Uncharacterized conser 44.9 87 0.0019 23.1 5.5 34 5-38 4-37 (88)
151 TIGR00595 priA primosomal prot 44.3 20 0.00043 36.5 3.1 61 130-209 198-263 (505)
152 TIGR00310 ZPR1_znf ZPR1 zinc f 43.7 2E+02 0.0043 25.4 8.8 10 158-167 2-11 (192)
153 PF14205 Cys_rich_KTR: Cystein 43.2 45 0.00098 23.0 3.6 13 156-168 4-16 (55)
154 TIGR03655 anti_R_Lar restricti 42.0 40 0.00086 22.9 3.4 10 158-167 3-12 (53)
155 cd01388 SOX-TCF_HMG-box SOX-TC 41.4 59 0.0013 23.3 4.4 42 23-66 14-55 (72)
156 PRK00349 uvrA excinuclease ABC 41.1 15 0.00033 40.3 1.7 31 140-170 738-775 (943)
157 cd00084 HMG-box High Mobility 40.6 64 0.0014 22.0 4.5 43 22-66 12-54 (66)
158 PRK12336 translation initiatio 40.6 1.4E+02 0.0031 26.4 7.6 14 137-150 95-108 (201)
159 PRK12380 hydrogenase nickel in 40.5 24 0.00052 28.2 2.4 29 138-166 68-96 (113)
160 PF14353 CpXC: CpXC protein 40.0 36 0.00078 27.6 3.5 13 183-195 38-50 (128)
161 PF07092 DUF1356: Protein of u 39.2 12 0.00027 34.0 0.6 13 184-196 39-51 (238)
162 PRK05580 primosome assembly pr 38.8 38 0.00082 35.9 4.2 61 130-209 366-431 (679)
163 PRK14051 negative regulator Gr 38.7 1.5E+02 0.0032 23.5 6.4 71 245-319 47-119 (123)
164 PF08273 Prim_Zn_Ribbon: Zinc- 37.9 23 0.00051 22.8 1.6 12 140-151 3-14 (40)
165 TIGR00757 RNaseEG ribonuclease 37.8 16 0.00036 36.2 1.3 25 172-196 379-403 (414)
166 PF07295 DUF1451: Protein of u 37.2 32 0.00069 29.0 2.7 9 156-164 112-120 (146)
167 cd01390 HMGB-UBF_HMG-box HMGB- 37.2 77 0.0017 21.8 4.5 41 24-66 14-54 (66)
168 PRK14873 primosome assembly pr 35.9 38 0.00082 35.8 3.6 59 129-208 368-431 (665)
169 TIGR01562 FdhE formate dehydro 35.8 36 0.00078 32.3 3.2 9 141-149 185-193 (305)
170 PF00505 HMG_box: HMG (high mo 35.7 72 0.0016 22.2 4.1 43 22-66 12-54 (69)
171 PF13719 zinc_ribbon_5: zinc-r 35.6 31 0.00067 21.6 1.9 10 141-150 3-12 (37)
172 COG1198 PriA Primosomal protei 35.0 21 0.00046 38.0 1.6 38 141-192 445-484 (730)
173 PRK00564 hypA hydrogenase nick 34.7 1E+02 0.0023 24.7 5.3 12 138-149 69-80 (117)
174 COG0178 UvrA Excinuclease ATPa 34.5 23 0.0005 38.0 1.8 33 135-167 724-764 (935)
175 PF07092 DUF1356: Protein of u 34.5 16 0.00035 33.2 0.5 28 183-215 27-54 (238)
176 cd01389 MATA_HMG-box MATA_HMG- 33.9 98 0.0021 22.4 4.7 42 22-65 13-54 (77)
177 PRK13263 ureE urease accessory 33.9 2.5E+02 0.0054 25.1 7.9 45 267-312 21-65 (206)
178 KOG3442|consensus 33.6 60 0.0013 26.4 3.6 34 5-38 60-93 (132)
179 TIGR00100 hypA hydrogenase nic 32.7 40 0.00086 27.0 2.5 10 139-148 69-78 (115)
180 COG5216 Uncharacterized conser 32.5 37 0.0008 23.8 1.9 14 120-133 31-44 (67)
181 PF02814 UreE_N: UreE urease a 32.3 1E+02 0.0023 21.7 4.4 45 268-313 16-60 (65)
182 PF11023 DUF2614: Protein of u 31.9 23 0.00049 28.3 1.0 28 181-208 67-94 (114)
183 COG1326 Uncharacterized archae 31.5 3.7E+02 0.008 23.8 9.8 21 216-236 64-86 (201)
184 PRK12380 hydrogenase nickel in 31.4 60 0.0013 25.9 3.3 11 185-195 88-98 (113)
185 PRK00464 nrdR transcriptional 30.6 56 0.0012 27.8 3.2 9 158-166 2-10 (154)
186 PF13453 zf-TFIIB: Transcripti 30.3 56 0.0012 20.8 2.5 8 184-191 20-27 (41)
187 PRK00488 pheS phenylalanyl-tRN 30.1 36 0.00078 32.8 2.1 46 159-212 233-281 (339)
188 PTZ00199 high mobility group p 29.4 1.1E+02 0.0025 23.3 4.5 42 25-66 37-78 (94)
189 PRK02935 hypothetical protein; 29.3 31 0.00068 27.2 1.3 28 181-208 68-95 (110)
190 PF01155 HypA: Hydrogenase exp 29.2 29 0.00063 27.7 1.2 29 138-166 68-96 (113)
191 TIGR00100 hypA hydrogenase nic 29.0 74 0.0016 25.5 3.5 12 184-195 87-98 (115)
192 PF01155 HypA: Hydrogenase exp 28.9 37 0.00081 27.1 1.8 11 184-194 87-97 (113)
193 PRK00488 pheS phenylalanyl-tRN 27.6 58 0.0013 31.4 3.1 22 139-168 259-280 (339)
194 PRK03824 hypA hydrogenase nick 27.2 1.7E+02 0.0036 24.2 5.4 10 185-194 109-118 (135)
195 PRK11712 ribonuclease G; Provi 27.2 28 0.00061 35.3 0.9 27 10-36 139-165 (489)
196 PF08792 A2L_zn_ribbon: A2L zi 27.2 57 0.0012 20.0 1.9 10 158-167 5-14 (33)
197 PF09862 DUF2089: Protein of u 27.0 39 0.00085 27.1 1.5 19 186-206 1-19 (113)
198 PF01846 FF: FF domain; Inter 26.2 1.5E+02 0.0033 19.4 4.2 14 20-33 1-14 (51)
199 PTZ00043 cytochrome c oxidase 26.1 1.2E+02 0.0025 27.5 4.4 48 8-55 84-132 (268)
200 PF13248 zf-ribbon_3: zinc-rib 26.0 31 0.00067 19.8 0.6 20 185-206 4-23 (26)
201 PF09855 DUF2082: Nucleic-acid 25.3 1.2E+02 0.0025 21.8 3.5 9 183-191 36-44 (64)
202 PTZ00087 thrombosponding-relat 25.2 96 0.0021 28.8 3.8 16 155-170 238-255 (340)
203 COG2214 CbpA DnaJ-class molecu 24.5 2.1E+02 0.0045 24.4 6.0 69 266-339 150-218 (237)
204 COG2260 Predicted Zn-ribbon RN 24.4 55 0.0012 23.0 1.7 11 183-193 17-27 (59)
205 PRK11032 hypothetical protein; 23.9 73 0.0016 27.2 2.7 14 20-33 3-16 (160)
206 PRK05580 primosome assembly pr 23.2 54 0.0012 34.7 2.2 39 140-192 390-430 (679)
207 smart00398 HMG high mobility g 22.8 1.9E+02 0.004 19.9 4.4 42 23-66 14-55 (70)
208 COG2190 NagE Phosphotransferas 22.7 98 0.0021 26.3 3.2 47 284-337 63-112 (156)
209 PRK13261 ureE urease accessory 22.5 2.6E+02 0.0056 23.7 5.9 44 269-313 22-65 (159)
210 PRK14873 primosome assembly pr 22.5 55 0.0012 34.6 2.1 39 140-193 392-432 (665)
211 smart00276 GLECT Galectin. Gal 22.4 1.1E+02 0.0024 24.7 3.4 40 218-257 2-48 (128)
212 smart00440 ZnF_C2C2 C2C2 Zinc 22.4 1.6E+02 0.0035 18.7 3.5 16 158-173 2-17 (40)
213 COG0089 RplW Ribosomal protein 22.3 67 0.0014 24.9 2.0 21 9-29 25-45 (94)
214 KOG0724|consensus 22.1 31 0.00068 32.9 0.2 55 11-66 32-86 (335)
215 PF06675 DUF1177: Protein of u 21.7 2.9E+02 0.0063 25.5 6.2 90 244-337 79-179 (276)
216 smart00778 Prim_Zn_Ribbon Zinc 21.7 49 0.0011 20.9 0.9 11 157-167 4-14 (37)
217 PRK10053 hypothetical protein; 21.7 1.1E+02 0.0023 25.3 3.2 22 294-315 88-113 (130)
218 PF13717 zinc_ribbon_4: zinc-r 21.4 76 0.0016 19.7 1.8 10 141-150 3-12 (36)
219 TIGR00595 priA primosomal prot 20.9 58 0.0013 33.2 1.8 40 140-193 222-263 (505)
220 KOG0527|consensus 20.9 1.3E+02 0.0027 29.0 4.0 43 21-65 73-115 (331)
221 cd00571 UreE UreE urease acces 20.8 3.1E+02 0.0066 22.5 5.8 45 268-313 20-64 (136)
222 PF14354 Lar_restr_allev: Rest 20.7 1.2E+02 0.0027 20.7 3.0 8 184-191 30-37 (61)
223 PRK14113 urease accessory prot 20.2 3E+02 0.0065 23.2 5.7 43 269-312 17-59 (152)
224 PF10041 DUF2277: Uncharacteri 20.2 3.7E+02 0.0081 19.9 5.7 33 6-38 5-37 (78)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-92 Score=664.91 Aligned_cols=332 Identities=40% Similarity=0.717 Sum_probs=301.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG 77 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 77 (349)
|..+|||+||||+++||.+|||||||+||++||||+|+ +|+++|++|++||||||||+||++||+||++++++++.+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 67899999999999999999999999999999999998 488999999999999999999999999999998743322
Q ss_pred ----CCCC-ChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCC
Q psy4972 78 ----GGAD-FSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSK 152 (349)
Q Consensus 78 ----~g~~-~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~ 152 (349)
++|+ ++.|+|++|||++.+ +..+..+++++.|+.+.|+|||+|||.|+++++.+++.+.|++|+|+|+.
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak 154 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGG------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAK 154 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCc------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCC
Confidence 1233 478999999974311 11233457789999999999999999999999999999999999999999
Q ss_pred CC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEE
Q psy4972 153 SG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI 231 (349)
Q Consensus 153 ~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i 231 (349)
.+ ...+|++|+|+|++...+++ |+ ++++++|+.|+|+|+++ +++|++|+|.|++...+.++|+||+|+.+|++|
T Consensus 155 ~gt~~~tC~tC~G~G~v~~~~~~--g~-~~~~~~C~~C~G~G~~i--~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~i 229 (371)
T COG0484 155 PGTDPKTCPTCNGSGQVRTVQRT--GF-FSFQQTCPTCNGTGKII--KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRI 229 (371)
T ss_pred CCCCCCcCCCCCCcCeEEEEEee--eE-EEEEEECCCCccceeEC--CCCCCCCCCCCeEeeeeEEEEECCCCCccCCEE
Confidence 98 58999999999998888777 33 47899999999999999 999999999999999999999999999999999
Q ss_pred EEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEE
Q psy4972 232 YFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIK 310 (349)
Q Consensus 232 ~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~ 310 (349)
+++|+|++++ ++++|||||+|+|++|+.|.|+|+||+++++|++.+|++|++++|+||||+ +.|+||+| +++|+++
T Consensus 230 r~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~ 306 (371)
T COG0484 230 RLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVF 306 (371)
T ss_pred EEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEE
Confidence 9999999997 567899999999999999999999999999999999999999999999998 99999999 6889999
Q ss_pred EEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972 311 GIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349 (349)
Q Consensus 311 ~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~ 349 (349)
||+|+|||...+. .+|||||+|+|++|++ ||++|+|
T Consensus 307 rl~gkG~p~~~~~-~~GDl~v~v~v~~P~~--ls~~q~~ 342 (371)
T COG0484 307 RLRGKGMPKLRSG-GRGDLYVRVKVETPKN--LSDEQKE 342 (371)
T ss_pred EEcCCCccccCCC-CcCCEEEEEEEEcCCC--CCHHHHH
Confidence 9999999986654 5799999999999999 9999864
No 2
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=3.1e-85 Score=637.58 Aligned_cols=332 Identities=47% Similarity=0.872 Sum_probs=302.8
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCC
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGA 80 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~ 80 (349)
|..+|||++|||+++||.+|||+|||+||++||||+|+. .++|++|++||+||+||++|+.||+||++++.++. +.
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~---~~ 100 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE---QP 100 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC---CC
Confidence 456899999999999999999999999999999999974 68999999999999999999999999998765321 12
Q ss_pred CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCC
Q psy4972 81 DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCA 160 (349)
Q Consensus 81 ~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~ 160 (349)
.++.|+|+.|||++ .+..+.+++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+...+|+
T Consensus 101 ~d~~d~f~~~Fggg----------~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~ 170 (421)
T PTZ00037 101 ADASDLFDLIFGGG----------RKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCK 170 (421)
T ss_pred cchhhhHHHhhccc----------cccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCC
Confidence 34568899998742 01123457899999999999999999999999999999999999998777788999
Q ss_pred CCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCC
Q psy4972 161 SCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240 (349)
Q Consensus 161 ~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~ 240 (349)
.|+|+|+++...++++ ++++.+.+|+.|+|+|+++...++|+.|+|.+++.+.+.++|+||+|+++|++|+|+|+|++.
T Consensus 171 ~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~ 249 (421)
T PTZ00037 171 LCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEK 249 (421)
T ss_pred CCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCC
Confidence 9999999888888887 777899999999999999977899999999999999999999999999999999999999998
Q ss_pred CCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCC
Q psy4972 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 320 (349)
Q Consensus 241 ~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~ 320 (349)
+++.||||+|+|++++|+.|+|+|+||+++++|+|++||+|+++.|+||||+.|.|+||+|++++||++++|+|+|||..
T Consensus 250 ~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~ 329 (421)
T PTZ00037 250 PNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTY 329 (421)
T ss_pred CCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccC
Confidence 88899999999999999999999999999999999999999999999999998999999999999999999999999987
Q ss_pred CCCCCCCcEEEEEEEEcC--CCCCCCccccC
Q psy4972 321 KNPYEKGTLYIKFDVQFP--ESYFNNDAKLK 349 (349)
Q Consensus 321 ~~~~~~Gdl~v~~~v~~P--~~~~ls~~q~~ 349 (349)
++++.+|||||+|+|.|| +. ||++|++
T Consensus 330 ~~~~~rGDL~V~~~V~~P~~~~--Ls~~qk~ 358 (421)
T PTZ00037 330 KSPFKKGNLYVTFEVIFPVDRK--FTNEEKE 358 (421)
T ss_pred CCCCCCCCEEEEEEEEcCCCCC--CCHHHHH
Confidence 665578999999999999 77 9998853
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-83 Score=620.35 Aligned_cols=331 Identities=31% Similarity=0.549 Sum_probs=292.8
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-C
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-G 77 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~ 77 (349)
|+.+|||++|||+++|+.+|||+|||+||++||||+|+ +|+++|++|++||+|||||++|+.||+||++++..+.+ +
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~ 80 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFS 80 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcC
Confidence 77899999999999999999999999999999999985 57899999999999999999999999999987653110 1
Q ss_pred ---CC------------CCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEe
Q psy4972 78 ---GG------------ADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVI 142 (349)
Q Consensus 78 ---~g------------~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~ 142 (349)
++ +..+.|+|++|||++ + ++..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg-----~----~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~ 151 (372)
T PRK14296 81 SNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSN-----K----SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTN 151 (372)
T ss_pred cCCCccccccccccccccccchhhhhhhcCCC-----c----cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeec
Confidence 11 112345666666531 0 11223457899999999999999999999999999999
Q ss_pred ccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEe
Q psy4972 143 CSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNV 221 (349)
Q Consensus 143 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~I 221 (349)
|++|+|+|...+. ..+|+.|+|+|.+...++++| ++++.+++|+.|+|+|+++ +++|+.|+|.+++.+.+.++|.|
T Consensus 152 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~I 228 (372)
T PRK14296 152 CSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKII--KNKCKNCKGKGKYLERKKIEVNI 228 (372)
T ss_pred cCCCCCCccCCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceee--cccccCCCCceEEEEEEEEEEEE
Confidence 9999999998764 789999999999998888888 4447889999999999998 88999999999999999999999
Q ss_pred cCCCccCcEEEEcCCCCCC-CCCCCccEEEEEEEccCCccccc-cceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcC
Q psy4972 222 DKGMKEMQKIYFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQ-GINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 299 (349)
Q Consensus 222 p~G~~~G~~i~~~g~G~~~-~~~~~GDl~v~i~v~~~~~f~r~-g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip 299 (349)
|+|+++|++|+|+|+|++. +++.+|||+|+|++++|+.|+|+ |+||+++++|||++||+|+++.|+||||+ +.|+||
T Consensus 229 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip 307 (372)
T PRK14296 229 PKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLP 307 (372)
T ss_pred CCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEEC
Confidence 9999999999999999987 46789999999999999999995 89999999999999999999999999998 899999
Q ss_pred CCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 300 ~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
++ +++|++++|+|+|||...+++.+|||||+|+|.||+. ||++|+
T Consensus 308 ~~--t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~--Ls~~q~ 352 (372)
T PRK14296 308 KS--INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKN--LSKKEK 352 (372)
T ss_pred Cc--cCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence 87 8999999999999996655556899999999999999 999885
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-81 Score=604.89 Aligned_cols=327 Identities=28% Similarity=0.551 Sum_probs=285.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-CC
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-GG 78 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~~ 78 (349)
.+|||+||||+++||.+|||+|||+||++||||+|+ +|+++|++|++||+||+||++|+.||+||++++..+++ ++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~ 81 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence 479999999999999999999999999999999986 37899999999999999999999999999987753221 11
Q ss_pred CCCC----hhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCC
Q psy4972 79 GADF----SDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG 154 (349)
Q Consensus 79 g~~~----~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 154 (349)
++.+ +.++|+.|||+ ++ . +....++++++|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|....
T Consensus 82 ~~~~~f~~~~~~F~~~fg~-----g~-~-~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 154 (369)
T PRK14288 82 DFSDFFEDLGSFFEDAFGF-----GA-R-GSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK 154 (369)
T ss_pred ccccchhhHHHHHHhhcCC-----CC-c-ccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC
Confidence 2222 22344444431 11 0 011123457899999999999999999999999999999999999999887
Q ss_pred CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972 155 ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR 234 (349)
Q Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~ 234 (349)
...+|+.|+|+|.+...+ |++ +++++|+.|.|+|+++ .++|+.|+|.+++.+.+.++|.||||+++|++|+|+
T Consensus 155 ~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~ 227 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQ----GFM-SFAQTCGACQGKGKII--KTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK 227 (369)
T ss_pred CCcCCCCCCCCcEEEEEe----ceE-EEEEecCCCCCCceEc--cccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence 788999999999865433 444 5677999999999998 788999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcC
Q psy4972 235 GEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 314 (349)
Q Consensus 235 g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g 314 (349)
|+|++.+++.+|||+|+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+.+.|+||++ +++|++++|+|
T Consensus 228 g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g 305 (369)
T PRK14288 228 NKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRN 305 (369)
T ss_pred cCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcC
Confidence 9999988888999999999999999999999999999999999999999999999998889999987 89999999999
Q ss_pred CCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 315 EGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 315 ~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+|||..+. ..+|||||+|+|.||++ ||++|+
T Consensus 306 ~G~p~~~~-~~~GDL~v~~~v~~P~~--ls~~q~ 336 (369)
T PRK14288 306 EGVKHPES-SYRGSLIVELQVIYPKS--LNKEQQ 336 (369)
T ss_pred CCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 99997653 35899999999999999 999885
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-80 Score=597.77 Aligned_cols=333 Identities=34% Similarity=0.666 Sum_probs=291.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc--
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA-- 75 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~-- 75 (349)
|.++|||++|||+++|+.+|||+|||+||++||||+|+ +++++|++|++||+||+||++|+.||+||+++++.+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG 80 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCC
Confidence 67799999999999999999999999999999999985 4679999999999999999999999999998765321
Q ss_pred -CCCC-------CCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972 76 -GGGG-------ADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN 147 (349)
Q Consensus 76 -~~~g-------~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~ 147 (349)
+.++ +.++.|+|++|||++. +++.++++..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~ffgg~~---~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~ 157 (372)
T PRK14286 81 FGQGAYTDFSDIFGDFGDIFGDFFGGGR---GGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCN 157 (372)
T ss_pred CCCCCcccccccccchhhHHHHhhCCCc---cCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCc
Confidence 1111 1235688999997531 1100001122345789999999999999999999999999999999999
Q ss_pred CCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972 148 GKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK 226 (349)
Q Consensus 148 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~ 226 (349)
|+|...+. ..+|+.|+|+|++.... |++ +++++|+.|+|+|+++ .++|+.|+|.+++.+.+.++|+||+|++
T Consensus 158 G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (372)
T PRK14286 158 GSGASKGSSPTTCPDCGGSGQIRRTQ----GFF-SVATTCPTCRGKGTVI--SNPCKTCGGQGLQEKRRTINIKIPPGVE 230 (372)
T ss_pred CCCcCCCCCCccCCCCcCeEEEEEEe----ceE-EEEEeCCCCCceeeEe--cccCCCCCCCcEEecceEEEEEECCCCC
Confidence 99998764 68999999999875542 555 5788999999999998 7899999999999999999999999999
Q ss_pred cCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972 227 EMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 305 (349)
Q Consensus 227 ~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~ 305 (349)
+|++|+|+|+|++.++ ..+|||||+|++++|+.|+|+|+||++++.|+|++|++|+++.|+||||+++.|+||++ ++
T Consensus 231 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~ 308 (372)
T PRK14286 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TE 308 (372)
T ss_pred CCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cC
Confidence 9999999999999864 56799999999999999999999999999999999999999999999999899999988 89
Q ss_pred CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+|++++|+|+|||..+. ..+|||||+|+|.||+. ||++|+
T Consensus 309 ~g~~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~--Ls~~qk 348 (372)
T PRK14286 309 SGQVFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKK--ITRRQR 348 (372)
T ss_pred CCcEEEECCCCCCCCCC-CCCCcEEEEEEEECCCC--CCHHHH
Confidence 99999999999997654 36899999999999999 999885
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-80 Score=597.81 Aligned_cols=329 Identities=35% Similarity=0.616 Sum_probs=292.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC----
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG---- 76 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~---- 76 (349)
.+|||+||||+++|+.+|||+|||+||++||||+|+ +++++|++|++||++|+||.+|+.||+||++++..+.+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 689999999999999999999999999999999995 57799999999999999999999999999987653211
Q ss_pred --CCCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCC
Q psy4972 77 --GGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG 154 (349)
Q Consensus 77 --~~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 154 (349)
+++++++.|+|++|||++ ++ .+..+++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+
T Consensus 84 ~~~~~~~~~~d~f~~~Fgg~----~~----~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 155 (377)
T PRK14298 84 FRGADFGGFGDIFEMFFGGG----GR----RGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPG 155 (377)
T ss_pred cccCCcCcchhhhHhhhcCC----Cc----cCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCC
Confidence 112334568899998742 10 01123457899999999999999999999999999999999999999887
Q ss_pred C-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEE
Q psy4972 155 A-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF 233 (349)
Q Consensus 155 ~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~ 233 (349)
. ..+|+.|+|+|++...+++++|+ ++++.+|+.|+|+|+++ .++|+.|+|++++.+.++++|.||||+++|++|+|
T Consensus 156 ~~~~~C~~C~G~G~~~~~~~~~~g~-~~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~ 232 (377)
T PRK14298 156 TSPKRCPTCGGTGQVTTTRSTPLGQ-FVTTTTCSTCHGRGQVI--ESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKL 232 (377)
T ss_pred CCCCcCCCCCCccEEEEEEecCcee-EEEEEeCCCCCCCCccc--CCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEE
Confidence 5 68999999999988877754444 48999999999999998 78999999999999999999999999999999999
Q ss_pred cCCCCCC-CCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEE
Q psy4972 234 RGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGI 312 (349)
Q Consensus 234 ~g~G~~~-~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l 312 (349)
+|+|++. .++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+||||+ +.|+||++ +++|++++|
T Consensus 233 ~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri 309 (377)
T PRK14298 233 SGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRL 309 (377)
T ss_pred ecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEE
Confidence 9999997 4678999999999999999999999999999999999999999999999997 78999998 799999999
Q ss_pred cCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 313 VGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 313 ~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+|+|||..+. ..+|||||+|+|.||+. |+++|+
T Consensus 310 ~g~G~p~~~~-~~~GDL~V~~~V~~P~~--ls~~~~ 342 (377)
T PRK14298 310 KDKGMPRLHG-HGKGDQLVKVIVKTPTK--LTQEQK 342 (377)
T ss_pred CCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 9999997654 36899999999999999 998874
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.3e-80 Score=595.05 Aligned_cols=332 Identities=30% Similarity=0.588 Sum_probs=296.4
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-- 76 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-- 76 (349)
|+.+|||++|||+++|+.+|||+|||+||++||||+|+ +++++|++|++||++|+||++|+.||+||++++..+.+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~ 80 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGG 80 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCC
Confidence 67789999999999999999999999999999999995 57889999999999999999999999999987753211
Q ss_pred -CCCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC
Q psy4972 77 -GGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA 155 (349)
Q Consensus 77 -~~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~ 155 (349)
.++|.++.|+|++|||++ ++ . .....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+.
T Consensus 81 ~~~~f~~~~d~f~~~fgg~----~~-~--~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 153 (371)
T PRK14287 81 GAGDFGGFSDIFDMFFGGG----GG-R--RNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGT 153 (371)
T ss_pred CCccccchHHHHHhhhccc----cC-C--CCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCC
Confidence 122344568999998742 11 0 111224578999999999999999999999999999999999999988764
Q ss_pred -cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972 156 -TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR 234 (349)
Q Consensus 156 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~ 234 (349)
..+|+.|+|+|++...+++++|+++ .+.+|+.|.|+|+++ .++|..|.|.+++.+.+.++|.||+|+++|++|+|+
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 230 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVV-NRRVCHHCEGTGKII--KQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEE-EEEeCCCCCCCCccc--cccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence 7889999999999999999999985 477999999999998 788999999999999999999999999999999999
Q ss_pred CCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEc
Q psy4972 235 GEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV 313 (349)
Q Consensus 235 g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~ 313 (349)
|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+||+ +.|+||++ +++|++++|+
T Consensus 231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~ 307 (371)
T PRK14287 231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLR 307 (371)
T ss_pred cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEc
Confidence 9999975 467899999999999999999999999999999999999999999999997 89999998 7999999999
Q ss_pred CCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 314 GEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 314 g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
|+|||..++. .+|||||+|+|.+|+. |+++|+
T Consensus 308 g~G~p~~~~~-~~GDL~V~~~v~~P~~--l~~~q~ 339 (371)
T PRK14287 308 GKGVPNVHGR-GQGDQHVQVRVVTPKN--LTEKEK 339 (371)
T ss_pred CCCccCCCCC-CCCCEEEEEEEEcCCC--CCHHHH
Confidence 9999976543 5899999999999999 998885
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.6e-80 Score=595.97 Aligned_cols=332 Identities=33% Similarity=0.602 Sum_probs=296.1
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-- 76 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-- 76 (349)
|+++|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||+++++++.+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~ 80 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGG 80 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCC
Confidence 67799999999999999999999999999999999985 57899999999999999999999999999987753211
Q ss_pred --C-C------CCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972 77 --G-G------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN 147 (349)
Q Consensus 77 --~-~------g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~ 147 (349)
+ + ++.++.|+|++|||++ ++. .....++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~fgg~----~~~---~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~ 153 (380)
T PRK14276 81 AGGFGGFDGSGGFGGFEDIFSSFFGGG----GAR---RNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCN 153 (380)
T ss_pred CCCCCCccccccccchhhHHHHHhCcc----ccc---cCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCc
Confidence 0 1 1234568899998742 110 1112345789999999999999999999999999999999999
Q ss_pred CCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972 148 GKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK 226 (349)
Q Consensus 148 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~ 226 (349)
|+|...+. ..+|+.|+|+|.+...+++++|+++ .+.+|+.|+|+|+++ +++|+.|+|.+++.+.++++|.||+|++
T Consensus 154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (380)
T PRK14276 154 GSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMR-RQVTCDVCHGTGKEI--KEPCQTCHGTGHEKQAHTVSVKIPAGVE 230 (380)
T ss_pred CcccCCCCCCccCCCCCCeeEEEEEEecCCceEE-EEEECCCCCCCCccc--cCCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence 99998764 7899999999999999999999985 478999999999998 7899999999999999999999999999
Q ss_pred cCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972 227 EMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 305 (349)
Q Consensus 227 ~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~ 305 (349)
+|++|+|+|+|++.++ ..+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+||+ +.|+||++ ++
T Consensus 231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~ 307 (380)
T PRK14276 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQ 307 (380)
T ss_pred CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CC
Confidence 9999999999999754 56799999999999999999999999999999999999999999999997 78999998 79
Q ss_pred CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+|++++|+|+|||..+. ..+|||||+|+|.||+. ||++|+
T Consensus 308 ~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~--l~~~q~ 347 (380)
T PRK14276 308 TGKKFRLRGKGAPKLRG-GGNGDQHVTVNIVTPTK--LNDAQK 347 (380)
T ss_pred CCCEEEECCCCcCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 99999999999997654 35799999999999999 999885
No 9
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-79 Score=593.11 Aligned_cols=331 Identities=34% Similarity=0.610 Sum_probs=292.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHHHHhccchhhhhhhhcccccccccccC----C
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE--AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG----G 77 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~----~ 77 (349)
+|||+||||+++|+.+|||+|||+||++||||+|++ ++++|++|++||+||+||++|+.||+||++...+++. +
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~ 82 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG 82 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence 799999999999999999999999999999999975 6789999999999999999999999999864322111 1
Q ss_pred CCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-c
Q psy4972 78 GGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-T 156 (349)
Q Consensus 78 ~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~ 156 (349)
++|.+++|+|++|||++ ++. ......++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+. .
T Consensus 83 ~~f~~~~d~f~~ffgg~----g~~--~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~ 156 (378)
T PRK14278 83 GGFGGLGDVFEAFFGGG----AAS--RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKP 156 (378)
T ss_pred cCcCchhHHHHHHhCCC----CCC--CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCc
Confidence 12344568999999742 100 0111234578999999999999999999999999999999999999998764 7
Q ss_pred ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCC
Q psy4972 157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE 236 (349)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~ 236 (349)
.+|+.|+|+|++...+++++|+++ .+++|+.|+|.|+++ .++|+.|+|++++.+.+.++|.||||+++|++|+|+|+
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~ 233 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVM-TSRPCPTCRGVGEVI--PDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQ 233 (378)
T ss_pred eecCCccCceEEEEEEeccceeEE-EEEECCCCCccceee--CCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccC
Confidence 899999999998888888888884 567999999999998 78899999999999999999999999999999999999
Q ss_pred CCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCC
Q psy4972 237 GDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGE 315 (349)
Q Consensus 237 G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~ 315 (349)
|++.++ +.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|||+..+.|+||++ +++|++++|+|+
T Consensus 234 G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~ 311 (378)
T PRK14278 234 GEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGR 311 (378)
T ss_pred cCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCC
Confidence 999875 56799999999999999999999999999999999999999999999777899999998 899999999999
Q ss_pred CcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 316 GMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 316 G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
|||..+. ..+|||||+|+|.||++ ||++|+
T Consensus 312 G~p~~~~-~~~GDL~V~~~V~~P~~--Ls~~qk 341 (378)
T PRK14278 312 GMPHLRS-GGRGDLHAHVEVVVPTR--LDHEDI 341 (378)
T ss_pred CCCCCCC-CCCCCEEEEEEEEcCCC--CCHHHH
Confidence 9997653 36899999999999999 999885
No 10
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-79 Score=592.75 Aligned_cols=332 Identities=35% Similarity=0.630 Sum_probs=295.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC-
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG- 77 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~- 77 (349)
|+.+|||+||||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||++++..+.++
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 80 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGG 80 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCC
Confidence 67789999999999999999999999999999999985 578999999999999999999999999999877532111
Q ss_pred ----CCCC---ChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972 78 ----GGAD---FSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG 150 (349)
Q Consensus 78 ----~g~~---~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G 150 (349)
+++. +++|+|++|||++ +. + .....++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~fgg~----~~--~-~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G 153 (376)
T PRK14280 81 GFGGGDFGGGFGFEDIFSSFFGGG----GR--R-RDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSG 153 (376)
T ss_pred CCCCCCccccccchhhHHHHhCCc----cc--c-CcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcc
Confidence 1111 3568899998742 10 0 0112345789999999999999999999999999999999999999
Q ss_pred CCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972 151 SKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ 229 (349)
Q Consensus 151 ~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~ 229 (349)
...+. ...|+.|+|+|.+...+++++|+++ .+.+|+.|+|+|+++ .++|+.|+|++++.+.+.++|.||+|+++|+
T Consensus 154 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~ 230 (376)
T PRK14280 154 AKPGTSKETCSHCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEI--KEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ 230 (376)
T ss_pred cCCCCCCccCCCCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCcee--cCCCCCCCCceEEEEEEEEEEEeCCCCcCCc
Confidence 88764 7899999999999888889999885 678999999999998 7899999999999999999999999999999
Q ss_pred EEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972 230 KIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED 308 (349)
Q Consensus 230 ~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~ 308 (349)
+|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||++ +++|+
T Consensus 231 ~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~ 307 (376)
T PRK14280 231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGT 307 (376)
T ss_pred EEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCc
Confidence 9999999999754 67899999999999999999999999999999999999999999999996 88999998 89999
Q ss_pred EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+++|+|+|||..++ ..+|||||+|+|.||+. ||++|+
T Consensus 308 ~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~--Ls~~q~ 344 (376)
T PRK14280 308 QFRLKGKGVPNVRG-YGQGDQYVVVRVVTPTK--LTDRQK 344 (376)
T ss_pred EEEEcCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 99999999997654 36899999999999999 999885
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.5e-79 Score=590.45 Aligned_cols=334 Identities=34% Similarity=0.626 Sum_probs=293.8
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-- 76 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-- 76 (349)
+.+|||+||||+++|+.+|||+|||+||++||||+|+ +++++|++|++||+||+||.+|+.||+||+++++.+..
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 3589999999999999999999999999999999986 36789999999999999999999999999887653110
Q ss_pred ---C-CC-----C----CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEec
Q psy4972 77 ---G-GG-----A----DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVIC 143 (349)
Q Consensus 77 ---~-~g-----~----~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C 143 (349)
+ ++ + .++.|+|++||++. | |+. +..+..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~-f--gg~-~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C 158 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF-F--GTG-RRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKC 158 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhccc-c--cCC-CcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccC
Confidence 0 11 1 23457888888642 2 221 00111234578999999999999999999999999999999
Q ss_pred cCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEec
Q psy4972 144 STCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222 (349)
Q Consensus 144 ~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip 222 (349)
++|+|+|...+. ..+|+.|+|+|++...+++++|++++. ++|+.|+|+|+++ .++|+.|+|++++.+.+.++|.||
T Consensus 159 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip 235 (386)
T PRK14277 159 DVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKII--TDPCNKCGGTGRIRRRRKIKVNIP 235 (386)
T ss_pred CCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeec--cCCCCCCCCCcEEeeeeEEEEecC
Confidence 999999998764 789999999999999999999998654 7999999999998 789999999999999999999999
Q ss_pred CCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCC
Q psy4972 223 KGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG 301 (349)
Q Consensus 223 ~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~ 301 (349)
+|+++|++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|++||+|+++.|+||||+ +.|+||++
T Consensus 236 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g 314 (386)
T PRK14277 236 AGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG 314 (386)
T ss_pred CCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC
Confidence 9999999999999999864 467899999999999999999999999999999999999999999999997 89999998
Q ss_pred CCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 302 EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 302 ~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+++|++++|+|+|||..++. .+|||||+|+|.||+. ||++|+
T Consensus 315 --~~~g~~~ri~g~G~p~~~~~-~~GDL~v~~~V~~P~~--Ls~~qk 356 (386)
T PRK14277 315 --TQTGTKFRLRGKGIPHLRGR-GRGDQIVKVYIEVPKK--LTEKQK 356 (386)
T ss_pred --CCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEeCCC--CCHHHH
Confidence 79999999999999976643 6899999999999999 999885
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-78 Score=584.14 Aligned_cols=328 Identities=36% Similarity=0.673 Sum_probs=290.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC---
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--- 76 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--- 76 (349)
.+|||++|||+++||.+|||+|||+||++||||+|+ ++.++|++|++||++|+||.+|+.||+||+.++.++++
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 479999999999999999999999999999999986 36789999999999999999999999999987653211
Q ss_pred -CCC-------CCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCC
Q psy4972 77 -GGG-------ADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNG 148 (349)
Q Consensus 77 -~~g-------~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G 148 (349)
.++ +.++.|+|++|||++. +. .+..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|++|+|
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~~----~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G 154 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---GQ----DKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLG 154 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc---CC----CCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCC
Confidence 011 1235688888887421 10 11123457899999999999999999999999999999999999
Q ss_pred CCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCcc
Q psy4972 149 KGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKE 227 (349)
Q Consensus 149 ~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~ 227 (349)
+|...+. ...|+.|+|+|++.. ++|++ +++.+|+.|.|.|+++ .++|..|+|.+++.+.+.++|+||||+++
T Consensus 155 ~G~~~~~~~~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~ 227 (365)
T PRK14285 155 KKSEKGTSPSICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKII--SNPCKSCKGKGSLKKKETIELKIPAGIDD 227 (365)
T ss_pred cccCCCCCCccCCCccCceeEEe----cCcee-EEeeecCCCCCccccc--CCCCCCCCCCCEEeccEEEEEEECCCCCC
Confidence 9998764 789999999998653 56777 7899999999999998 78999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCC
Q psy4972 228 MQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKP 306 (349)
Q Consensus 228 G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~ 306 (349)
|++|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||+++++|||.+||+|++++|+||||+++.|+||++ +++
T Consensus 228 G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~ 305 (365)
T PRK14285 228 NQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TEN 305 (365)
T ss_pred CCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCC
Confidence 999999999999875 56899999999999999999999999999999999999999999999999899999998 899
Q ss_pred CcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972 307 EDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349 (349)
Q Consensus 307 g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~ 349 (349)
|++++|+|+|||..+.. .+|||||+|+|.+|+. |+++|++
T Consensus 306 g~~irl~GkG~p~~~~~-~~GDL~V~~~v~~P~~--l~~~q~~ 345 (365)
T PRK14285 306 DEQIIIKNEGMPILHTE-KFGNLILIIKIKTPKN--LNSNAIK 345 (365)
T ss_pred CcEEEECCCCccCCCCC-CCCCEEEEEEEECCCC--CCHHHHH
Confidence 99999999999976643 5799999999999999 9988853
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-78 Score=583.69 Aligned_cols=334 Identities=32% Similarity=0.594 Sum_probs=293.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhcccccccccc--
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK-- 74 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~-- 74 (349)
|+.+|||+||||+++||.+|||+|||+||++||||+|+. ++++|++|++||++|+||++|+.||+||++++...
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~ 80 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ 80 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc
Confidence 677999999999999999999999999999999999863 57899999999999999999999999998775421
Q ss_pred --cCCCCC-C----Ch-----hhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEe
Q psy4972 75 --AGGGGA-D----FS-----DDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVI 142 (349)
Q Consensus 75 --~~~~g~-~----~~-----~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~ 142 (349)
.+++++ . .+ .|+|++|||++ ++ +..+...+.+++|+.+.|.|||+|+|+|+++++.+.+.+.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~--~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~ 154 (369)
T PRK14282 81 ETESGGGFFEDIFKDFENIFNRDIFDIFFGER----RT--QEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYET 154 (369)
T ss_pred cCCCCCcccccccccccccccchhhhHhhccc----CC--cccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeeccc
Confidence 111121 1 01 26677777531 11 0011123457899999999999999999999999999999
Q ss_pred ccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEe
Q psy4972 143 CSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNV 221 (349)
Q Consensus 143 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~I 221 (349)
|++|+|+|...+. ..+|+.|+|+|.++..+++++|+++ .+++|+.|+|+|+++ .++|+.|+|++++.+.++++|+|
T Consensus 155 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~I 231 (369)
T PRK14282 155 CPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFV-SERTCERCGGTGKIP--GEYCHECGGSGRIRRRVRTTVKI 231 (369)
T ss_pred CCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceE-EEEECCCCCCcceeC--CCCCCCCCCceeEEEEEEEEEEe
Confidence 9999999998764 7899999999999999999999985 577999999999998 78999999999999999999999
Q ss_pred cCCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCC
Q psy4972 222 DKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300 (349)
Q Consensus 222 p~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~ 300 (349)
|||+++|++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.||++|++++|+|+||+++.|+||+
T Consensus 232 p~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~ 311 (369)
T PRK14282 232 PAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPP 311 (369)
T ss_pred CCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCC
Confidence 99999999999999999875 46789999999999999999999999999999999999999999999999989999999
Q ss_pred CCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 301 ~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+ +++|++++|+|+|||..+. ..+|||||+|+|.+|+. |+.+|+
T Consensus 312 g--~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~--l~~~~~ 354 (369)
T PRK14282 312 G--TQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKR--LSREER 354 (369)
T ss_pred C--cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 8 8999999999999997543 35899999999999999 988774
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-78 Score=585.57 Aligned_cols=335 Identities=34% Similarity=0.636 Sum_probs=296.3
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG- 76 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~- 76 (349)
|..+|||++|||+++|+.+|||+|||+||++||||+|+ +++++|++|++||++|+||.+|+.||+||+++++.+++
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~ 80 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGF 80 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCC
Confidence 66789999999999999999999999999999999996 46799999999999999999999999999987753211
Q ss_pred -CCC---C-----CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972 77 -GGG---A-----DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN 147 (349)
Q Consensus 77 -~~g---~-----~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~ 147 (349)
.++ + .++.|+|++|||+++ ++. +.+...+++++|+.+.|.|||+|+|+|+++++.+.+.+.|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~---g~~--~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 155 (380)
T PRK14297 81 GSGGFGGFDFSDMGGFGDIFDSFFGGGF---GSS--SRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCN 155 (380)
T ss_pred CCCCCCCcCcccccchhHHHHHHhccCc---ccc--ccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcc
Confidence 011 1 134688999997521 111 01112345789999999999999999999999999999999999
Q ss_pred CCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972 148 GKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK 226 (349)
Q Consensus 148 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~ 226 (349)
|+|...+. ..+|+.|+|+|++...+++++|++ +.+.+|+.|+|+|+++ .++|..|+|.+++.+.+.++|.||+|++
T Consensus 156 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 156 GTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSF-VSTTTCDKCGGSGKVI--EDPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred cccccCCCcCccCCCccCeEEEEEEEEcCCcee-EEEEeCCCCCCCceEc--CCCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 99998764 789999999999998889999987 4688999999999998 7899999999999999999999999999
Q ss_pred cCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972 227 EMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 305 (349)
Q Consensus 227 ~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~ 305 (349)
+|++|+|+|+|++.+. ..+|||+|+|++++|+.|+|+|+||++++.|+|++||+|++++|+|+||+ +.|+||++ ++
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~ 309 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQ 309 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cC
Confidence 9999999999998754 57899999999999999999999999999999999999999999999996 88999998 89
Q ss_pred CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972 306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349 (349)
Q Consensus 306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~ 349 (349)
+|+++||+|+|||..+. ..+|||||+|+|.||+. ||++|++
T Consensus 310 ~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~--ls~~q~~ 350 (380)
T PRK14297 310 PGTVFRLKGKGVPRVNS-TGRGNQYVTVIVDIPKK--LNSKQKE 350 (380)
T ss_pred CCCEEEEcCCCcCCCCC-CCCCcEEEEEEEEcCCC--CCHHHHH
Confidence 99999999999997653 36899999999999999 9998853
No 15
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.8e-78 Score=585.29 Aligned_cols=338 Identities=38% Similarity=0.682 Sum_probs=292.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc---C
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA---G 76 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~---~ 76 (349)
.+|||+||||+++|+.+|||+|||+||++||||+|+ +++++|++|++||++|+||.+|+.||+||++++.... +
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 379999999999999999999999999999999986 3678999999999999999999999999998765311 1
Q ss_pred CC----CCCChhhHH---HhhhcCCC-------CCCCCCCCCC-C-C--CCCCCCCCeeeeEEeChhhhhcCCcceeeee
Q psy4972 77 GG----GADFSDDLI---SQLFGGRL-------FGMGGPFGGH-S-R--GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLT 138 (349)
Q Consensus 77 ~~----g~~~~~d~f---~~~fg~~~-------~~~g~~~~~~-~-~--~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~ 138 (349)
++ ++.+++|+| ++|||++. ++|.+.++++ . . ..+.++.|+.+.|.|||+|+|+|+++++.+.
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 11 111244665 47787421 1111101111 1 1 1224689999999999999999999999999
Q ss_pred eeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEE
Q psy4972 139 KSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLE 218 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~ 218 (349)
+.+.|++|+|+|...+...+|+.|+|+|.+...+++++|+++ .+++|+.|+|+|+++ +++|+.|+|++++...++++
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~ 238 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFV-NITACPTCGGEGRVV--KDRCPACYGEGIKQGEVTVK 238 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEE-EEEecCCCcceeeee--CCCCCCCCCCccEecceEEE
Confidence 999999999999988778899999999999888889998885 477999999999998 78999999999999999999
Q ss_pred EEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEE
Q psy4972 219 VNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLIT 297 (349)
Q Consensus 219 v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ 297 (349)
|+||+|+++|++|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||++++.|+|.+||+|++++|+||||+ +.|+
T Consensus 239 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ 317 (397)
T PRK14281 239 VTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLT 317 (397)
T ss_pred EecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEE
Confidence 999999999999999999999864 68999999999999999999999999999999999999999999999996 8899
Q ss_pred cCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972 298 HPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349 (349)
Q Consensus 298 ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~ 349 (349)
||++ +++|++++|+|+|||..+. ..+|||||+|+|.||+. ||++|++
T Consensus 318 ip~g--~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~--Ls~~qk~ 364 (397)
T PRK14281 318 IPAG--TQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKE--VSHQDKE 364 (397)
T ss_pred eCCc--cCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCC--CCHHHHH
Confidence 9998 8999999999999997654 36899999999999999 9998853
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-77 Score=582.85 Aligned_cols=332 Identities=32% Similarity=0.568 Sum_probs=277.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccc-----
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK----- 74 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~----- 74 (349)
.+|||+||||+++|+.+|||+|||+||++||||+|+ +|+++|++|++||+|||||+||+.||+||+++..++
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 479999999999999999999999999999999997 467999999999999999999999999997432111
Q ss_pred --c-CC-CCC--------CChhhHHHhhhcCC------CCC--CCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcce
Q psy4972 75 --A-GG-GGA--------DFSDDLISQLFGGR------LFG--MGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTK 134 (349)
Q Consensus 75 --~-~~-~g~--------~~~~d~f~~~fg~~------~~~--~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~ 134 (349)
+ ++ ++| .+++++|+..++++ +|+ |++..+..+...+.+++|+.+.|.|||+|+|+|++++
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~ 167 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMP 167 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEE
Confidence 0 00 111 11122221110000 010 1110000112234578999999999999999999999
Q ss_pred eeeeeeEeccCCCCCCCCCC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEe
Q psy4972 135 LQLTKSVICSTCNGKGSKSG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSV 213 (349)
Q Consensus 135 i~~~~~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~ 213 (349)
+.+.+.+.|++|+|+|...+ ...+|+.|+|+|++...+ |++ +++++|+.|+|+|+++ +++|..|.|++++.+
T Consensus 168 v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~i--~~~C~~C~G~g~v~~ 240 (392)
T PRK14279 168 LRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAF-GFSEPCTDCRGTGSII--EDPCEECKGTGVTTR 240 (392)
T ss_pred EeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cce-EEEEecCCCCceeEEe--CCcCCCCCCCeEEEE
Confidence 99999999999999999876 478999999999876543 333 5779999999999998 789999999999999
Q ss_pred eEEEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCc
Q psy4972 214 KKVLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDR 292 (349)
Q Consensus 214 ~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~ 292 (349)
.+.++|.||||+++|++|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+||+
T Consensus 241 ~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~ 320 (392)
T PRK14279 241 TRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP 320 (392)
T ss_pred eeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce
Confidence 99999999999999999999999999864 56799999999999999999999999999999999999999999999996
Q ss_pred EEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 293 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 293 ~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+.|+||++ +++|++++|+|+|||... +.+|||||+|+|.||++ ||++|+
T Consensus 321 -i~v~Ip~g--~~~g~~iri~g~G~p~~~--~~~GDL~I~~~v~~P~~--Ls~~q~ 369 (392)
T PRK14279 321 -VGVKVPAG--TADGRILRVRGRGVPKRS--GGAGDLLVTVKVAVPPN--LDGAAA 369 (392)
T ss_pred -EEEEECCC--CCCCCEEEECCCCCCCCC--CCCCCEEEEEEEECCCC--CCHHHH
Confidence 88999998 899999999999999643 46899999999999999 999885
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-77 Score=576.94 Aligned_cols=329 Identities=36% Similarity=0.657 Sum_probs=287.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG 77 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 77 (349)
|..+|||++|||+++||.+|||+|||+||++||||+|+. ++++|++|++||+||+||.+|+.||+||++++.++++.
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~ 80 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGF 80 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCC
Confidence 567899999999999999999999999999999999863 67899999999999999999999999999877532211
Q ss_pred CCC-------CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972 78 GGA-------DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG 150 (349)
Q Consensus 78 ~g~-------~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G 150 (349)
+++ ..+.|+|++|||.+ +. ++.+..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~g-----~~-~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G 154 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGFS-----GG-GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG 154 (373)
T ss_pred CCcccccccccchHHHHHHHhhcc-----Cc-ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence 222 22346676666521 11 001122345789999999999999999999999999999999999999
Q ss_pred CCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972 151 SKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ 229 (349)
Q Consensus 151 ~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~ 229 (349)
...+. ..+|+.|+|+|.+... . |++ +++.+|+.|+|.|+++ .++|+.|+|.+++.+.+.++|+||+|+++|+
T Consensus 155 ~~~~~~~~~C~~C~G~G~v~~~--~--G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (373)
T PRK14301 155 AAPGTSPETCRHCGGSGQVRQS--Q--GFF-QIAVPCPVCRGEGRVI--THPCPKCKGSGIVQQTRELKVRIPAGVDTGS 227 (373)
T ss_pred cCCCCCCcccCCccCeeEEEEE--e--eeE-EEEEeCCCCCceeeec--CCCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence 98764 7899999999987643 2 454 5699999999999998 7899999999999999999999999999999
Q ss_pred EEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972 230 KIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED 308 (349)
Q Consensus 230 ~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~ 308 (349)
+|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+||||+ +.|+||++ +++|+
T Consensus 228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~ 304 (373)
T PRK14301 228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGE 304 (373)
T ss_pred EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCc
Confidence 999999999875 467899999999999999999999999999999999999999999999997 89999998 89999
Q ss_pred EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+++|+|+|||..+. ..+|||||+|+|.||+. |+++|+
T Consensus 305 ~~ri~g~G~p~~~~-~~~GDL~I~~~V~~P~~--l~~~q~ 341 (373)
T PRK14301 305 VFRLRGKGLPYLGS-SQKGDLLVEVSVVTPTK--LTKRQE 341 (373)
T ss_pred EEEEcCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 99999999998654 36899999999999999 999885
No 18
>KOG0712|consensus
Probab=100.00 E-value=3.7e-78 Score=560.35 Aligned_cols=330 Identities=52% Similarity=0.936 Sum_probs=308.4
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCC
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGA 80 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~ 80 (349)
+.++.||+||+|+++||.+|||||||+||++||||+||.+.++|++|+.||||||||++|++||+||++++.++++++|+
T Consensus 1 ~~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~ 80 (337)
T KOG0712|consen 1 VKNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF 80 (337)
T ss_pred CcccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999776665555
Q ss_pred CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCC
Q psy4972 81 DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCA 160 (349)
Q Consensus 81 ~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~ 160 (349)
+. |++||+.+ ++ ..++..|++|+.+.+.|||+|+|.|.++++.++++.+|+.|.|+|..+++...|+
T Consensus 81 ~~----f~~~F~~g---~~------~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~ 147 (337)
T KOG0712|consen 81 GG----FSQFFGFG---GN------GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCT 147 (337)
T ss_pred cc----HHHhccCC---Cc------CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCC
Confidence 43 88888722 11 1223344999999999999999999999999999999999999999999888999
Q ss_pred CCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCC
Q psy4972 161 SCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240 (349)
Q Consensus 161 ~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~ 240 (349)
.|+|+|..+.+++++|||+++++.+|..|+|.|.+++..+.|+.|.|++++...+.++|.|++|+++++++.+.|++++.
T Consensus 148 ~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea 227 (337)
T KOG0712|consen 148 TCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEA 227 (337)
T ss_pred CCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeec
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCC
Q psy4972 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY 320 (349)
Q Consensus 241 ~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~ 320 (349)
++..+||+++.|..++|+.|.|.|+||++..+|+|.+|++|+.+.+.||||+.+.+.++||+|++|+.+++|+|+|||+.
T Consensus 228 ~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~ 307 (337)
T KOG0712|consen 228 PGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIF 307 (337)
T ss_pred CCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 321 KNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 321 ~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+++ +|||||+|+|+||+ |+++++
T Consensus 308 ~~~--~g~lyi~~~v~fp~---~~~~~~ 330 (337)
T KOG0712|consen 308 RNP--KGDLYIKFEVKFPK---LSPSQL 330 (337)
T ss_pred cCC--CCcEEEEEEEEcCC---CChHHH
Confidence 876 99999999999999 576664
No 19
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-77 Score=579.66 Aligned_cols=330 Identities=34% Similarity=0.626 Sum_probs=283.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc---CC
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA---GG 77 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~---~~ 77 (349)
.|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||++++..+. ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 48999999999999999999999999999999996 3678999999999999999999999999988763221 11
Q ss_pred CCCCC------------------hhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeee
Q psy4972 78 GGADF------------------SDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTK 139 (349)
Q Consensus 78 ~g~~~------------------~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~ 139 (349)
+++.. +.|+|++||++....|++ .....++.++.|+.+.|.|||+|+|+|+++++.+.+
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~---~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r 157 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM---RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSG 157 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc---cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEee
Confidence 11111 135555565431100111 001123457899999999999999999999999999
Q ss_pred eEeccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEE
Q psy4972 140 SVICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLE 218 (349)
Q Consensus 140 ~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~ 218 (349)
.+.|++|+|+|+..+. ..+|+.|+|+|.+...+ |++ +++.+|+.|+|.|+++ .++|+.|+|.+++.+.++++
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~ 230 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFF-SMASTCPECGGEGRVI--TDPCSVCRGQGRIKDKRSVH 230 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceE-EEEEECCCCCCCCccc--CCcCCCCCCcceecceEEEE
Confidence 9999999999998764 78999999999876533 455 5788999999999998 78999999999999999999
Q ss_pred EEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCC-CcEEEE
Q psy4972 219 VNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD-DRQLLI 296 (349)
Q Consensus 219 v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~-g~~i~v 296 (349)
|+||||+++|++|+|+|+|+++++ +.+|||+|+|++++|+.|+|+|+||++++.|||++|++|++++|+||| |+.+.|
T Consensus 231 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v 310 (391)
T PRK14284 231 VHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRL 310 (391)
T ss_pred EEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEE
Confidence 999999999999999999999874 678999999999999999999999999999999999999999999998 668999
Q ss_pred EcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 297 THPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 297 ~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+||++ +++|++++|+|+|||..++ ..+|||||+|+|.+|+. |+++|+
T Consensus 311 ~Ip~g--~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~--l~~~q~ 357 (391)
T PRK14284 311 TIPEG--IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQN--LSEEQK 357 (391)
T ss_pred EECCc--cCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCC--CCHHHH
Confidence 99998 8999999999999997654 36899999999999999 999875
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.6e-77 Score=573.46 Aligned_cols=330 Identities=33% Similarity=0.616 Sum_probs=288.1
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG- 76 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~- 76 (349)
|+.+|||+||||+++|+.+|||+|||+||++||||+|+ +++++|++|++||+||+||.+|+.||+||++++..++.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~ 80 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS 80 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC
Confidence 77899999999999999999999999999999999986 36789999999999999999999999999988753211
Q ss_pred C-CCC----CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCC
Q psy4972 77 G-GGA----DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS 151 (349)
Q Consensus 77 ~-~g~----~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~ 151 (349)
+ +++ .++.|+|++|||.+ +..++.......+++|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|.
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~g-----~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~ 155 (366)
T PRK14294 81 GFSGFDDIFSSFGDIFEDFFGFG-----GGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGC 155 (366)
T ss_pred CcCccccchhhhhhhHHHhhccC-----CCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccc
Confidence 1 122 23457888888611 1000011123457899999999999999999999999999999999999999
Q ss_pred CCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972 152 KSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230 (349)
Q Consensus 152 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~ 230 (349)
.... ...|+.|+|+|.+... . |++ +++++|+.|+|+|+++ ..+|+.|+|.+++.+.+.++|.||+|+++|++
T Consensus 156 ~~~~~~~~C~~C~G~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (366)
T PRK14294 156 EPGTSPTTCPQCGGSGQVTQS--Q--GFF-SIRTTCPRCRGMGKVI--VSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR 228 (366)
T ss_pred cCCCCcccCCCcCCeEEEEEE--e--eeE-EEEeeCCCCCCcCeec--CcCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence 8764 7899999999987643 2 555 5789999999999998 78999999999999999999999999999999
Q ss_pred EEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcE
Q psy4972 231 IYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI 309 (349)
Q Consensus 231 i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~ 309 (349)
|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.+||+|++++|+||||+ +.|+||++ +++|++
T Consensus 229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~ 305 (366)
T PRK14294 229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDI 305 (366)
T ss_pred EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCE
Confidence 99999999874 567899999999999999999999999999999999999999999999996 68999998 899999
Q ss_pred EEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 310 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 310 ~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
++|+|+|||..+. ..+|||||+|+|.+|+. |+++|+
T Consensus 306 iri~G~G~p~~~~-~~~GDL~V~~~v~~P~~--l~~~q~ 341 (366)
T PRK14294 306 FRFKGKGIPSLRG-GGRGDQIIEVEVKVPTR--LTKKQE 341 (366)
T ss_pred EEECCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 9999999997654 36899999999999999 998874
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9e-77 Score=575.97 Aligned_cols=333 Identities=35% Similarity=0.624 Sum_probs=281.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhc----cccccccccc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDR----YGIQGIKEKA 75 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~----~G~~~~~~~~ 75 (349)
.+|||+||||+++|+.+|||+|||+||++||||+|+ +++++|++|++||+||+||.+|+.||+ ||++++..+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 469999999999999999999999999999999986 467999999999999999999999999 9988775321
Q ss_pred C---CCCCC-ChhhHHHhhhcCCC-------CC--CCCCCCC-CCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeE
Q psy4972 76 G---GGGAD-FSDDLISQLFGGRL-------FG--MGGPFGG-HSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSV 141 (349)
Q Consensus 76 ~---~~g~~-~~~d~f~~~fg~~~-------~~--~g~~~~~-~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~ 141 (349)
+ ++++. +++++|..+++++. |. |+.++++ ++..++.++.|+.+.|.|||+|+|+|+++++.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~ 167 (389)
T PRK14295 88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQA 167 (389)
T ss_pred CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccc
Confidence 1 11221 11233322110000 00 1111110 1122345789999999999999999999999999999
Q ss_pred eccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEE
Q psy4972 142 ICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN 220 (349)
Q Consensus 142 ~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~ 220 (349)
.|++|+|+|...+. ..+|+.|+|+|.+.... |++ +++.+|+.|+|+|+++ .++|..|.|++++.+.+.++|.
T Consensus 168 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~~~~~~~l~V~ 240 (389)
T PRK14295 168 PCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGF-SLSEPCPDCKGRGLIA--DDPCLVCKGSGRAKSSRTMQVR 240 (389)
T ss_pred cCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cce-EEEEecCCCcceeEEe--ccCCCCCCCCceEeeeeEEEEE
Confidence 99999999998874 78999999999876543 334 5778999999999998 7899999999999999999999
Q ss_pred ecCCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcC
Q psy4972 221 VDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 299 (349)
Q Consensus 221 Ip~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip 299 (349)
||+|+++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+||++++.|||++|++|++++|+||||+++.|+||
T Consensus 241 Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip 320 (389)
T PRK14295 241 IPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLP 320 (389)
T ss_pred eCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEEC
Confidence 999999999999999999875 4678999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 300 ~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
++ +++|++++|+|+|||..+ +.+|||||+|+|.||+. ||++|+
T Consensus 321 ~g--~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~--Ls~~qk 363 (389)
T PRK14295 321 PG--TPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKD--LSGKAR 363 (389)
T ss_pred Cc--cCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCC--CCHHHH
Confidence 98 899999999999999643 35899999999999999 999885
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-76 Score=571.41 Aligned_cols=327 Identities=36% Similarity=0.668 Sum_probs=284.6
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG 77 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 77 (349)
|+.+|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||++++..+.++
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~ 80 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGG 80 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCC
Confidence 67789999999999999999999999999999999986 367899999999999999999999999999877532211
Q ss_pred CC------CCC-hhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972 78 GG------ADF-SDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG 150 (349)
Q Consensus 78 ~g------~~~-~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G 150 (349)
++ +.+ +.|+|+.|||++ + + ....++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~f~~~f~~~fgg~-----~--~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G 152 (371)
T PRK10767 81 GGFGGGGGFGDIFGDIFGDIFGGG-----R--G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG 152 (371)
T ss_pred CCCCCccccccchhhhhhhhccCC-----c--c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence 11 111 234555555421 0 0 1122346789999999999999999999999999999999999999
Q ss_pred CCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972 151 SKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ 229 (349)
Q Consensus 151 ~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~ 229 (349)
...+. ...|+.|+|+|++...+ |++ +++.+|+.|+|+|+++ .++|+.|+|++++.+.+.++|.||+|+++|+
T Consensus 153 ~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 225 (371)
T PRK10767 153 AKPGTSPKTCPTCHGAGQVRMQQ----GFF-TVQQTCPTCHGRGKII--KDPCKKCHGQGRVEKEKTLSVKIPAGVDTGD 225 (371)
T ss_pred cCCCCCCccCCCCCCeeEEEEee----ceE-EEEEeCCCCCCceeEC--CCCCCCCCCCceEeeeeeEEEecCCCCCCCc
Confidence 88764 67999999999866543 555 5788999999999998 7899999999999999999999999999999
Q ss_pred EEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972 230 KIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED 308 (349)
Q Consensus 230 ~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~ 308 (349)
+|+|+|+|++.. ++.+|||+|+|++++|+.|+|+|+||++++.|+|++||+|++++|+|||| .+.|+||++ +++|+
T Consensus 226 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~ 302 (371)
T PRK10767 226 RIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEG--TQTGK 302 (371)
T ss_pred EEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCC--CCCCC
Confidence 999999999864 56789999999999999999999999999999999999999999999999 589999998 89999
Q ss_pred EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+++|+|+|||..+. ..+|||||+|+|.||+. |+++|+
T Consensus 303 ~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~--l~~~~~ 339 (371)
T PRK10767 303 LFRLRGKGVKSVRS-GARGDLYCQVVVETPVN--LTKRQK 339 (371)
T ss_pred EEEECCCCcCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence 99999999997654 36899999999999999 998874
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-75 Score=568.16 Aligned_cols=329 Identities=35% Similarity=0.650 Sum_probs=283.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC----
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG---- 76 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~---- 76 (349)
.+|||++|||+++|+.+|||+|||+||++||||+|+ +++++|++|++||++|+||.+|+.||+||++++..+..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 479999999999999999999999999999999995 57899999999999999999999999999987653211
Q ss_pred CCC-----CCChhhHHHhhhcCCCCC----CCCCCC-CCC---CCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEec
Q psy4972 77 GGG-----ADFSDDLISQLFGGRLFG----MGGPFG-GHS---RGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVIC 143 (349)
Q Consensus 77 ~~g-----~~~~~d~f~~~fg~~~~~----~g~~~~-~~~---~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C 143 (349)
.++ +.++.|+|++||+. |+ |++..+ .++ ...+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~--fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C 159 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDI--FGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPC 159 (382)
T ss_pred ccccccccCCCHHHHHHHHHHh--ccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccC
Confidence 011 12456788888542 11 121100 011 1224478999999999999999999999999999999
Q ss_pred cCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEec
Q psy4972 144 STCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222 (349)
Q Consensus 144 ~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip 222 (349)
+.|+|+|...+. ...|+.|+|+|.+.... ++ ++++++|+.|+|.|. + .++|+.|+|.+++.+.++++|+||
T Consensus 160 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~-~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip 231 (382)
T PRK14291 160 EACGGTGYDPGSGEKVCPTCGGSGEIYQRG----GF-FRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIP 231 (382)
T ss_pred CCCccccCCCCCCCccCCCCCCceEEEEec----ce-EEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeC
Confidence 999999998764 78999999999876541 33 467899999999995 4 688999999999999999999999
Q ss_pred CCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCC
Q psy4972 223 KGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG 301 (349)
Q Consensus 223 ~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~ 301 (349)
||+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||+.+.|+||++
T Consensus 232 ~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g 311 (382)
T PRK14291 232 PGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG 311 (382)
T ss_pred CCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc
Confidence 9999999999999999975 678999999999999999999999999999999999999999999999998899999999
Q ss_pred CCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCC
Q psy4972 302 EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNN 344 (349)
Q Consensus 302 ~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls 344 (349)
+++|++++|+|+|||..+. ..+|||||+|+|.||+...||
T Consensus 312 --~~~G~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls 351 (382)
T PRK14291 312 --TKEGDKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLS 351 (382)
T ss_pred --cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcC
Confidence 8999999999999998654 368999999999999732388
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.1e-75 Score=564.32 Aligned_cols=330 Identities=35% Similarity=0.655 Sum_probs=293.7
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--CC--
Q psy4972 5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--GG-- 78 (349)
Q Consensus 5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--~~-- 78 (349)
|||++|||+++|+.+|||+|||+||++||||+|+ ++.++|++|++||++|+|+.+|+.||+||++++..+.+ ++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 7999999999999999999999999999999995 57899999999999999999999999999987653211 11
Q ss_pred ------CCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCC
Q psy4972 79 ------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSK 152 (349)
Q Consensus 79 ------g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~ 152 (349)
++.++.|+|++|||++. +++ ..+...+.+++|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|..
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~---g~~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~ 155 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGG---GSG--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAK 155 (354)
T ss_pred CCccccCcCchhhhHHHHhccCc---ccC--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCC
Confidence 13345688999997531 111 0112335678999999999999999999999999999999999999988
Q ss_pred CCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEE
Q psy4972 153 SGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI 231 (349)
Q Consensus 153 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i 231 (349)
.+. ...|+.|+|+|.++..++++||++++ +++|+.|.|+|+++ .++|+.|+|++++.+.+.++|+||+|+++|++|
T Consensus 156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 232 (354)
T TIGR02349 156 PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKII--KEPCSTCKGKGRVKERKTITVKIPAGVDTGQRL 232 (354)
T ss_pred CCCCCccCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceec--CCCCCCCCCCcEecccceEEEEECCCCCCCCEE
Confidence 764 78999999999999999999999865 77999999999998 778999999999999999999999999999999
Q ss_pred EEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEE
Q psy4972 232 YFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIK 310 (349)
Q Consensus 232 ~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~ 310 (349)
+|+|+|++.. ++.+|||+|+|++++|+.|+|+|+||++.+.|+|++||+|+++.|+|||| .+.|.||++ +++|+++
T Consensus 233 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~ 309 (354)
T TIGR02349 233 RVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVF 309 (354)
T ss_pred EEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEE
Confidence 9999999864 46789999999999999999999999999999999999999999999999 689999988 8999999
Q ss_pred EEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 311 GIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 311 ~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+|+|+|||..++. .+|||||+|+|.||+. |+++|+
T Consensus 310 ~i~g~G~p~~~~~-~~GDL~i~~~v~~P~~--l~~~~~ 344 (354)
T TIGR02349 310 RLKGKGVPRLRGN-GRGDLLVTVKVETPKN--LSKEQK 344 (354)
T ss_pred EECCCCcCCCCCC-CCCCEEEEEEEECCCC--CCHHHH
Confidence 9999999976543 6899999999999999 998875
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.8e-76 Score=568.68 Aligned_cols=335 Identities=33% Similarity=0.604 Sum_probs=288.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCC
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGG 78 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 78 (349)
|+++|||++|||+++|+.+|||+|||+||++||||+|+ +++++|++|++||++|+||.+|++||+||++++......+
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~ 81 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQED 81 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccc
Confidence 56799999999999999999999999999999999995 5789999999999999999999999999988764211100
Q ss_pred CC--CChhhHHHhhhcC--CC---CCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCC
Q psy4972 79 GA--DFSDDLISQLFGG--RL---FGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS 151 (349)
Q Consensus 79 g~--~~~~d~f~~~fg~--~~---~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~ 151 (349)
.+ ..+.++|..|+++ .. |+|++ ++...++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~f~~~~fgg----~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~ 157 (378)
T PRK14283 82 IFNNINFEDIFQGFGFGIGNIFDMFGFGG----GSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRA 157 (378)
T ss_pred cccccCccccccccccchhhhccccccCC----CCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCcccc
Confidence 00 0112222222210 00 11221 11223457899999999999999999999999999999999999998
Q ss_pred CCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972 152 KSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230 (349)
Q Consensus 152 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~ 230 (349)
..+. ...|+.|+|+|++...+++++|+++ .+.+|+.|.|.|+.+ .++|..|+|++++.+.+.++|.||+|+++|++
T Consensus 158 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~ 234 (378)
T PRK14283 158 EPGSEVKTCPTCGGTGQVKQVRNTILGQMM-NVTTCPDCQGEGKIV--EKPCSNCHGKGVVRETKTISVKIPAGVETGSR 234 (378)
T ss_pred CCCCCCccCCCcCCccEEEEEEeccCceEE-EEEECCCCCccceec--CCCCCCCCCceeeccceeEEEEECCCCCCCcE
Confidence 8764 7889999999999999999999874 567999999999998 78999999999999999999999999999999
Q ss_pred EEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcE
Q psy4972 231 IYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI 309 (349)
Q Consensus 231 i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~ 309 (349)
|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+|| ++.|+||++ +++|++
T Consensus 235 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~ 311 (378)
T PRK14283 235 LRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTT 311 (378)
T ss_pred EEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCE
Confidence 99999999875 46789999999999999999999999999999999999999999999999 689999998 799999
Q ss_pred EEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 310 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 310 ~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+||+|+|||.... ..+|||||+|+|.||++ ||++|+
T Consensus 312 ~ri~g~G~p~~~~-~~~GdL~v~~~v~~P~~--l~~~q~ 347 (378)
T PRK14283 312 FRLKGHGMPSLRW-SGKGNLYVKVKVVVPKK--LSPKQK 347 (378)
T ss_pred EEECCCCCCCCCC-CCCCCEEEEEEEEeCCC--CCHHHH
Confidence 9999999997653 36899999999999999 999885
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-75 Score=563.05 Aligned_cols=332 Identities=31% Similarity=0.587 Sum_probs=288.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC--
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG-- 77 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-- 77 (349)
+|||+||||+++|+.+|||+|||+||++||||+|+ ++.++|++|++||++|+||.+|+.||+||+.++.+++++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 79999999999999999999999999999999986 366999999999999999999999999999876532111
Q ss_pred -CC---CCChhhHHHhhhcCCCCC--CCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCC
Q psy4972 78 -GG---ADFSDDLISQLFGGRLFG--MGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS 151 (349)
Q Consensus 78 -~g---~~~~~d~f~~~fg~~~~~--~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~ 151 (349)
++ +.++.|+|+.|||+.+.+ +++. + ......+++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~-~-~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~ 160 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGF-G-NQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGA 160 (365)
T ss_pred ccccccccchhHHHHHHhcCcccccccccc-c-cccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccC
Confidence 11 235678999999753100 0110 0 01111234789999999999999999999999999999999999998
Q ss_pred CCCCcccCCCCCccceEEEEEEecCccc-eEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972 152 KSGATFTCASCRGCGFKIHHRIIGPNMT-QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230 (349)
Q Consensus 152 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~ 230 (349)
......+|+.|+|+|++...++ +|++ ++.+.+|+.|.|.|+++ +++|+.|+|++++.+.+.++|.||||+.+|++
T Consensus 161 ~~~~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 236 (365)
T PRK14290 161 KNGKLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIP--EEKCPRCNGTGTVVVNEDISVKIPKGATDNLR 236 (365)
T ss_pred CCCCCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEc--cCCCCCCCCceeEEEeeEEEEEECCCCCCCcE
Confidence 8777789999999998766554 4554 45678999999999998 78999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEE
Q psy4972 231 IYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIK 310 (349)
Q Consensus 231 i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~ 310 (349)
|+|+|+|++ +++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|++|. +.|+||++ +++|+++
T Consensus 237 i~~~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~i 312 (365)
T PRK14290 237 LRVKGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVL 312 (365)
T ss_pred EEEccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEE
Confidence 999999996 6788999999999999999999999999999999999999999999999984 89999988 8999999
Q ss_pred EEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 311 GIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 311 ~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+|+|+|||..+.. .+|||||+|+|.+|+. |+++|+
T Consensus 313 ri~g~G~p~~~~~-~~GDL~V~~~V~~P~~--l~~~~~ 347 (365)
T PRK14290 313 KIKGAGMPHLNGH-GSGDLLVRINVEVPKR--LTSKQK 347 (365)
T ss_pred EECCCCCCCCCCC-CCCCEEEEEEEECCCC--CCHHHH
Confidence 9999999976543 5899999999999999 998874
No 27
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-75 Score=564.53 Aligned_cols=331 Identities=32% Similarity=0.615 Sum_probs=286.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc---c-CC
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK---A-GG 77 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~---~-~~ 77 (349)
+|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+|+.+|+.||+||++++..+ + ++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 79999999999999999999999999999999985 477899999999999999999999999999876532 1 11
Q ss_pred --CCCC-ChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCC
Q psy4972 78 --GGAD-FSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG 154 (349)
Q Consensus 78 --~g~~-~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 154 (349)
+++. ++.++|++||+. +| +++........+.++.|+.+.|.+||+|+|+|+++++.+.+.+.|++|+|+|...+
T Consensus 83 ~~~~~~~~~~~~f~~~f~~-~~--gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~ 159 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSD-FM--GGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKG 159 (372)
T ss_pred CCCccccchhhhHHHHHHh-hc--CCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCC
Confidence 1221 234667777753 12 21100001112347899999999999999999999999999999999999999876
Q ss_pred C-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEE
Q psy4972 155 A-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF 233 (349)
Q Consensus 155 ~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~ 233 (349)
. ..+|+.|+|+|.+... .|++ +++.+|+.|+|.|+++ .++|+.|+|++++.+.+.++|.||+|+++|++|+|
T Consensus 160 ~~~~~C~~C~G~G~~~~~----~g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l 232 (372)
T PRK14300 160 ETVTTCDACSGVGATRMQ----QGFF-TIEQACHKCQGNGQII--KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRH 232 (372)
T ss_pred CCCccCCCccCeEEEEEe----eceE-EEEEeCCCCCccceEe--CCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEE
Confidence 4 7899999999987542 2566 4788999999999998 78999999999999999999999999999999999
Q ss_pred cCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEE
Q psy4972 234 RGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGI 312 (349)
Q Consensus 234 ~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l 312 (349)
+|+|++.. ++.+|||+|+|++++|+.|+|+|+||++++.|+|++|++|+++.|+|+||+.+.|+||++ +++|++++|
T Consensus 233 ~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri 310 (372)
T PRK14300 233 TGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRL 310 (372)
T ss_pred eccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEE
Confidence 99999874 567899999999999999999999999999999999999999999999998899999999 899999999
Q ss_pred cCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972 313 VGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349 (349)
Q Consensus 313 ~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~ 349 (349)
+|+|||..++ ..+|||||+|+|.||++ ||++|++
T Consensus 311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~--ls~~qk~ 344 (372)
T PRK14300 311 RSKGMSKMRS-TIRGDMLTHIHVEVPKN--LSKRQRE 344 (372)
T ss_pred CCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHHH
Confidence 9999997653 36899999999999999 9999863
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.3e-75 Score=560.77 Aligned_cols=337 Identities=34% Similarity=0.625 Sum_probs=294.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--C-
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--G- 77 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--~- 77 (349)
..|||+||||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||++++.++.+ +
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 479999999999999999999999999999999985 47899999999999999999999999999987653211 1
Q ss_pred CCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-c
Q psy4972 78 GGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-T 156 (349)
Q Consensus 78 ~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~ 156 (349)
+++..+.|+|++||++. .++++.....+..++.++.|+.+.|.|||+|+|.|+++++.+.+.+.|++|+|+|...+. .
T Consensus 82 ~~~~~~~d~f~~~fg~~-~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 160 (374)
T PRK14293 82 GDMGGFADIFETFFSGF-GGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP 160 (374)
T ss_pred ccccchHHHHHHHhccc-CCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCC
Confidence 12233468899998641 011110000111234578899999999999999999999999999999999999998764 7
Q ss_pred ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCC
Q psy4972 157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE 236 (349)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~ 236 (349)
..|+.|+|+|++...+++++|++++ +.+|+.|.|.|+++ +++|+.|.|.+++.+.+.++|+||||+++|++|+|+|+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~ 237 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVI--EDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGE 237 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEE-EeeCCCCCcceeEe--ccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccC
Confidence 7899999999999999999998854 68999999999998 78999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCC
Q psy4972 237 GDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGE 315 (349)
Q Consensus 237 G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~ 315 (349)
|++.. +..+|||+|+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|+||+ +.|+||++ +++|++++|+|+
T Consensus 238 G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~ 314 (374)
T PRK14293 238 GDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENK 314 (374)
T ss_pred ccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCC
Confidence 99864 467899999999999999999999999999999999999999999999996 78899988 899999999999
Q ss_pred CcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 316 GMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 316 G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
|||..++.+.+|||||+|+|.||+. |+++|+
T Consensus 315 G~p~~~~~~~~GDL~v~~~v~~P~~--l~~~~~ 345 (374)
T PRK14293 315 GVPRLGNPVARGDHLITVKVKIPTR--ISDEER 345 (374)
T ss_pred CCCCCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence 9998765446899999999999999 998875
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-74 Score=561.06 Aligned_cols=340 Identities=34% Similarity=0.636 Sum_probs=292.6
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG 77 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 77 (349)
|+.+|||++|||+++|+.+|||+|||+||++||||+|+ ++.++|++|++||++|+||.+|+.||+||+++++.+.+.
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 45689999999999999999999999999999999986 467999999999999999999999999999876532111
Q ss_pred CCC----CChhhHHHhh---hcCCCCCCCCC--CC-CCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972 78 GGA----DFSDDLISQL---FGGRLFGMGGP--FG-GHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN 147 (349)
Q Consensus 78 ~g~----~~~~d~f~~~---fg~~~~~~g~~--~~-~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~ 147 (349)
+++ .++.++|+.| |++.+.+++++ ++ +.....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+
T Consensus 82 ~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 161 (386)
T PRK14289 82 GGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH 161 (386)
T ss_pred CCCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence 111 1234555443 54311011110 00 01112245789999999999999999999999999999999999
Q ss_pred CCCCCCC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972 148 GKGSKSG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK 226 (349)
Q Consensus 148 G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~ 226 (349)
|+|.... ....|+.|+|+|.+...+++++|+++ .+.+|+.|+|.|+++ ..+|..|.|++++.+.+.++|+||+|++
T Consensus 162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 238 (386)
T PRK14289 162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQ-TQSTCPTCNGEGKII--KKKCKKCGGEGIVYGEEVITVKIPAGVA 238 (386)
T ss_pred CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEE-EEEecCCCCcccccc--CcCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence 9998875 47899999999999999999999985 589999999999998 7899999999999999999999999999
Q ss_pred cCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972 227 EMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 305 (349)
Q Consensus 227 ~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~ 305 (349)
+|++|+|+|+|++.. ++.+|||+|+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|++|+ +.|+||++ ++
T Consensus 239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~ 315 (386)
T PRK14289 239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQ 315 (386)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cC
Confidence 999999999999874 567899999999999999999999999999999999999999999999996 89999998 79
Q ss_pred CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972 306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349 (349)
Q Consensus 306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~ 349 (349)
+|+++||+|+|||..++ ..+|||||+|+|.||++ ||++|++
T Consensus 316 ~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~--l~~~q~~ 356 (386)
T PRK14289 316 PGKVLRLRNKGLPSVNG-YGTGDLLVNVSVYIPET--LSKEEKQ 356 (386)
T ss_pred CCcEEEECCCCcCCCCC-CCCCcEEEEEEEEeCCC--CCHHHHH
Confidence 99999999999997654 36899999999999999 9998863
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-73 Score=552.90 Aligned_cols=331 Identities=34% Similarity=0.625 Sum_probs=291.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC---
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG--- 77 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~--- 77 (349)
+.|||++|||+++|+.+|||+|||+||++||||+|+ +++++|++|++||++|+||.+|+.||+||+++..+..++
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~ 80 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF 80 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence 369999999999999999999999999999999996 478999999999999999999999999998764221111
Q ss_pred CCC-CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-
Q psy4972 78 GGA-DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA- 155 (349)
Q Consensus 78 ~g~-~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~- 155 (349)
+++ .+++|+|+.|||++.+ ++. ....++.++.|+.+.+.+||+|+|+|+++++.+.+.+.|++|+|+|.....
T Consensus 81 ~~~~~d~~d~f~~~fg~~~~--~~~---~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~ 155 (371)
T PRK14292 81 GGMGFDPMDIFEQLFGGAGF--GGG---RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGK 155 (371)
T ss_pred CccCCChHHHHHHhhCCCCc--CCC---CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCC
Confidence 111 1346899999975321 110 011234578999999999999999999999999999999999999987753
Q ss_pred -cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972 156 -TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR 234 (349)
Q Consensus 156 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~ 234 (349)
..+|+.|+|+|++...+++.+|+++ .+.+|+.|+|.|+.+ ..+|..|.|++++...+.++|.||+|+++|++|+|+
T Consensus 156 ~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 232 (371)
T PRK14292 156 PPKTCPTCRGAGAVRAQARTIFGVVE-TQQPCPTCRGEGQII--TDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA 232 (371)
T ss_pred CCccCCCCCCccEEEEEEeccCceEE-EeeecCCCcccceec--CCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence 6889999999999888888888884 578999999999998 789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcC
Q psy4972 235 GEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 314 (349)
Q Consensus 235 g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g 314 (349)
|+|++.+++. |||+|+|++++|+.|+|+|+||++.+.|+|.+|++|+++.|+||||+. .|+||++ ++++++++|+|
T Consensus 233 G~G~~~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g 308 (371)
T PRK14292 233 GMGNEGPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRG 308 (371)
T ss_pred cCcCCCCCCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECC
Confidence 9999987665 999999999999999999999999999999999999999999999974 7999998 89999999999
Q ss_pred CCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 315 EGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 315 ~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+|||..++. .+|||||+|+|.||+. ||++|+
T Consensus 309 ~G~p~~~~~-~~GDL~V~~~v~~P~~--l~~~q~ 339 (371)
T PRK14292 309 QGMPRLQGA-GTGDLIVEYEIAVPKQ--LSPEAR 339 (371)
T ss_pred CCCCCCCCC-CCCCEEEEEEEECCCC--CCHHHH
Confidence 999976543 5799999999999999 999885
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-58 Score=432.45 Aligned_cols=260 Identities=36% Similarity=0.591 Sum_probs=218.8
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc---c
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK---A 75 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~---~ 75 (349)
|..+|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||++++..+ .
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~ 80 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGP 80 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCC
Confidence 66789999999999999999999999999999999985 578999999999999999999999999998754321 0
Q ss_pred -----CCCC-----CCChhhHHHhhhcCC-CC-CCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEec
Q psy4972 76 -----GGGG-----ADFSDDLISQLFGGR-LF-GMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVIC 143 (349)
Q Consensus 76 -----~~~g-----~~~~~d~f~~~fg~~-~~-~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C 143 (349)
+.++ +.+++|+|++|||+. .+ +++..... ....++++.|+.+.+.|||+|+|.|+++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~-~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~----- 154 (291)
T PRK14299 81 PPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGS-VGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA----- 154 (291)
T ss_pred CCCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCccccccc-ccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-----
Confidence 0011 134568899999742 11 11110000 012245789999999999999999999887542
Q ss_pred cCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecC
Q psy4972 144 STCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDK 223 (349)
Q Consensus 144 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~ 223 (349)
.+.++|+||+
T Consensus 155 ----------------------------------------------------------------------g~~~~V~Ip~ 164 (291)
T PRK14299 155 ----------------------------------------------------------------------GERLSVRIPP 164 (291)
T ss_pred ----------------------------------------------------------------------CEEEEEecCC
Confidence 1368899999
Q ss_pred CCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCC
Q psy4972 224 GMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEV 303 (349)
Q Consensus 224 G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v 303 (349)
|+++|++|+|+|+|++. |||+|+|++++|+.|+|+|+||+++++||+.+|++|++++|+|+||. +.|+||++
T Consensus 165 G~~~G~~ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~-- 236 (291)
T PRK14299 165 GVREGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR-- 236 (291)
T ss_pred CcCCCcEEEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--
Confidence 99999999999999874 99999999999999999999999999999999999999999999996 88999988
Q ss_pred cCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 304 IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 304 ~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+++|+++||+|+|||.. .+.+|||||+|+|.||+. |+++|+
T Consensus 237 ~~~g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~--l~~~~~ 277 (291)
T PRK14299 237 TQAGRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTR--PTPEEE 277 (291)
T ss_pred cCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCC--CCHHHH
Confidence 89999999999999963 246899999999999999 998874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.6e-56 Score=422.49 Aligned_cols=272 Identities=28% Similarity=0.488 Sum_probs=225.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhccccc----ccccc
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQ----GIKEK 74 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~----~~~~~ 74 (349)
|+.+|||++|||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||.. ++.+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~ 80 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQ 80 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccc
Confidence 67789999999999999999999999999999999985 5789999999999999999999999999854 22211
Q ss_pred --cCCC---CCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCC
Q psy4972 75 --AGGG---GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGK 149 (349)
Q Consensus 75 --~~~~---g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~ 149 (349)
.+++ ++.++.++|+.|||++ ++. .+....+++.|+.+.+.|||+|++.|+.+++.+.+.+ |
T Consensus 81 ~~~~~~~~~~~~~~~~~f~~~~g~~----~~~---~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~--- 146 (306)
T PRK10266 81 FQHGDGQSFNAEDFDDIFSSIFGQH----ARQ---SRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y--- 146 (306)
T ss_pred cccCCCCCCCCCCHHHHHHHHhCCC----CCC---CCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c---
Confidence 0111 1234568888888742 110 1112345689999999999999999999999887642 1
Q ss_pred CCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972 150 GSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ 229 (349)
Q Consensus 150 G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~ 229 (349)
.|.|.. . ....+.++|+||+|+++|+
T Consensus 147 -------------~g~G~~---------------------------~--------------~~~~~~~~V~Ip~G~~~G~ 172 (306)
T PRK10266 147 -------------NAFGMI---------------------------E--------------QEIPKTLNVKIPAGVGNGQ 172 (306)
T ss_pred -------------cCCCeE---------------------------E--------------EeeeEEEEEEECCCCcCCc
Confidence 122210 0 0123579999999999999
Q ss_pred EEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972 230 KIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED 308 (349)
Q Consensus 230 ~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~ 308 (349)
+|+|+|+|++..+ ..+|||+|+|++++|+.|+|+|+||++++.||+++|++|++++|+|++|+ +.|+||++ +++|+
T Consensus 173 ~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~ 249 (306)
T PRK10266 173 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQ 249 (306)
T ss_pred EEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCC
Confidence 9999999998754 57899999999999999999999999999999999999999999999996 89999998 79999
Q ss_pred EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+++|+|+|||..+ .+|||||+|+|.+|++ ||++|+
T Consensus 250 ~~ri~g~G~p~~~---~~GdL~v~~~v~~P~~--l~~~q~ 284 (306)
T PRK10266 250 RLRVKGKGLVSKK---QTGDLYAVLKIVMPPK--PDEKTA 284 (306)
T ss_pred EEEECCCCCCCCC---CCCCEEEEEEEECCCC--CCHHHH
Confidence 9999999999643 5899999999999999 999885
No 33
>KOG0713|consensus
Probab=100.00 E-value=4.7e-45 Score=334.99 Aligned_cols=306 Identities=40% Similarity=0.648 Sum_probs=245.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc--C
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA--G 76 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~--~ 76 (349)
+.+|||++|||+++|+..|||+||||||++||||+|| .|.+.|++|+.||||||||++|+.||+||++++...+ +
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~ 93 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDG 93 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccc
Confidence 4699999999999999999999999999999999996 4789999999999999999999999999999997543 1
Q ss_pred CCCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCc
Q psy4972 77 GGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT 156 (349)
Q Consensus 77 ~~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~ 156 (349)
.++.+. .++|+.||+.-++.+++. ......+++.++...++.++++.|.+...+....+.+.|+. .|+ .
T Consensus 94 ~~g~~~-~~~f~~~f~dfg~~~~g~---~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~--~---- 162 (336)
T KOG0713|consen 94 EGGGGG-NDIFSAFFGDFGVTVGGN---PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGT--R---- 162 (336)
T ss_pred ccCCcc-cchHHHhhcccccccCCC---cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Ccc--c----
Confidence 112111 478888887422222221 22334678999999999999999999998888877776652 111 1
Q ss_pred ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCC
Q psy4972 157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE 236 (349)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~ 236 (349)
.|+-. ..+..++.++|.++.++ ...|.+|.+.+.......+++.+..|...+....+..+
T Consensus 163 ----~~~~~-~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (336)
T KOG0713|consen 163 ----KCNCR-LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELE 222 (336)
T ss_pred ----ccCCh-hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeecc
Confidence 11111 11223344444443332 34577777777788889999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCC
Q psy4972 237 GDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEG 316 (349)
Q Consensus 237 G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G 316 (349)
|.+...+.+||+.+.+...+|+.|.|+++++++.+.+++.+++.|...++.++|+..+.+.-.. +..|+..++..++|
T Consensus 223 ~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~--~~~p~~~~~~~~~~ 300 (336)
T KOG0713|consen 223 GEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKK--ITWPGARTRKKGEG 300 (336)
T ss_pred CCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhh--ccccchhhhhhhcc
Confidence 9998889999999999999999999999999999999999999999999999999766554333 36789999999999
Q ss_pred cCCCCCCCCCCcEEEEEEEEcCCC
Q psy4972 317 MPIYKNPYEKGTLYIKFDVQFPES 340 (349)
Q Consensus 317 ~p~~~~~~~~Gdl~v~~~v~~P~~ 340 (349)
||..+.....|++|++|.+.+|.+
T Consensus 301 ~~~l~~~~~~~~~~~t~~~~~~~~ 324 (336)
T KOG0713|consen 301 MPLLKNRNEKGNLYVTFDVEFPKS 324 (336)
T ss_pred chhhhccchhcceeEEecccCccc
Confidence 998887778899999999999965
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=1.5e-41 Score=338.72 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=113.1
Q ss_pred EEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCC
Q psy4972 211 LSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD 290 (349)
Q Consensus 211 ~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~ 290 (349)
+.+.+.++|+||+|+++|++|+|+|+|++++++. |||+|+|++++|+.|+|+|+||++.+.|+|.+||+|+++.|+|||
T Consensus 693 vkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLD 771 (871)
T TIGR03835 693 TNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPN 771 (871)
T ss_pred eeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCC
Confidence 3456799999999999999999999999876664 999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEE-cCCC
Q psy4972 291 DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ-FPES 340 (349)
Q Consensus 291 g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~-~P~~ 340 (349)
|+ +.|+||++ +++|+++||+|+|||..+ +.||||||+|+|. ++++
T Consensus 772 Gr-VkLkIPpg--TqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 772 KL-FNVRIPGG--IKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred CC-EEEeeCCC--CCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence 97 88999988 899999999999999543 4689999999997 5655
No 35
>KOG0715|consensus
Probab=100.00 E-value=1.8e-40 Score=308.60 Aligned_cols=244 Identities=33% Similarity=0.606 Sum_probs=208.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCC
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGA 80 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~ 80 (349)
..|||+||||+++|+..|||+||++||++||||.|. ++.++|++|.+|||+|+|+++|+.||++|..+.. +..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~-----~~~ 116 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG-----EFG 116 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc-----ccc
Confidence 348999999999999999999999999999999985 6889999999999999999999999999886511 111
Q ss_pred CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-cccC
Q psy4972 81 DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTC 159 (349)
Q Consensus 81 ~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C 159 (349)
+++.++|..+|++. ......+.+..+++.++|+++..|+.+.+.+.....|.+|.|.|...+. ...|
T Consensus 117 g~~~~~~~~~~~~~------------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 184 (288)
T KOG0715|consen 117 GNPFDVFLEFFGGK------------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESC 184 (288)
T ss_pred CCccchHHHhhccc------------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccc
Confidence 25668888887641 1112234577788999999999999999999999999999999977774 7899
Q ss_pred CCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCC
Q psy4972 160 ASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ 239 (349)
Q Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~ 239 (349)
+.|.|+|.........+. .. +|+.|.|.|.+. .+.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~f~----~~-~~~~c~~~~~~~--~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~ 257 (288)
T KOG0715|consen 185 KTCSGRGLVSNPKEDPFI----LY-TCSYCLGRGLVL--RDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND 257 (288)
T ss_pred hhhhCcccccccccCCcc----ee-ecccccccceec--cchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc
Confidence 999999965543333321 12 899999999998 56699999999999999999999999999999999998865
Q ss_pred CCCCCCccEEEEEEEccCCccccccceeEEEeecCHHH
Q psy4972 240 QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTE 277 (349)
Q Consensus 240 ~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~ 277 (349)
||.|.+.|.+++.|+|+|.|++++..|++.+
T Consensus 258 -------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 -------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred -------eEEEEEEeccCcccccccCcccccccccccC
Confidence 8999999999999999999999999998753
No 36
>KOG0714|consensus
Probab=99.91 E-value=3.7e-23 Score=193.66 Aligned_cols=254 Identities=41% Similarity=0.662 Sum_probs=191.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-C
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-G 77 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~ 77 (349)
..|||++|+|.++|+.++|++||+++|++||||+|+. +.++|++|.+||++|+|+.+|..||+||+++..+... .
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 4799999999999999999999999999999999864 3457999999999999999999999999866654211 1
Q ss_pred ----C-----CCCChhhHHHhhhcCC-CCC-C-------------------CCCCCC--C----------CCCCCCCCCC
Q psy4972 78 ----G-----GADFSDDLISQLFGGR-LFG-M-------------------GGPFGG--H----------SRGRPHRGED 115 (349)
Q Consensus 78 ----~-----g~~~~~d~f~~~fg~~-~~~-~-------------------g~~~~~--~----------~~~~~~~~~d 115 (349)
. .+..+.+.|.+|||.. .+. + +..... . ......+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 1 1234467888888831 111 0 000000 0 0011122233
Q ss_pred eeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceE
Q psy4972 116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEV 195 (349)
Q Consensus 116 ~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 195 (349)
+.+.+.+++++.+.++.+...+.+...=. ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~-------- 192 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSFTS-----------------------------------------NG-------- 192 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccccC-----------------------------------------Cc--------
Confidence 45555568888888888877776543100 00
Q ss_pred EcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEE--eec
Q psy4972 196 MNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTT--ETI 273 (349)
Q Consensus 196 ~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~--l~I 273 (349)
.........+.+.+.+++..|+.+....+|+..++..|-++++.+..++|..|.+.+.+|... ..|
T Consensus 193 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (306)
T KOG0714|consen 193 ------------REGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI 260 (306)
T ss_pred ------------ccccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceeccccee
Confidence 001224567899999999999999999999988777889999999999999999999999999 999
Q ss_pred CHHHHhCCcEEEEecCCCcEEEEEcCCC-CCcCCCcEEEEcCCCcCC
Q psy4972 274 TLTEALCGFTKVIKHLDDRQLLITHPPG-EVIKPEDIKGIVGEGMPI 319 (349)
Q Consensus 274 ~l~~al~G~~~~i~~l~g~~i~v~ip~~-~v~~~g~~~~l~g~G~p~ 319 (349)
++.+|++|....++++++..+.+. .. .++.++...+++++|||.
T Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 261 SLKEALLGVTVFVPTLDGRSYSLS--INKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ehhhhhcCcceeeecccCccccCc--ccccccCCCceeeecCCCCCC
Confidence 999999999999999999765543 44 568999999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.84 E-value=2.9e-21 Score=146.97 Aligned_cols=80 Identities=38% Similarity=0.567 Sum_probs=69.3
Q ss_pred eeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCc
Q psy4972 266 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNND 345 (349)
Q Consensus 266 dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~ 345 (349)
||+++++|++++|++|++++|+|+||+++.|++|++ +++|++++|+|+|||...+++.+|||||+|+|.||++ ||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~--ls~ 76 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKK--LSP 76 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SS--TSH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCC--CCH
Confidence 799999999999999999999999999999999998 8999999999999999887768999999999999999 999
Q ss_pred cccC
Q psy4972 346 AKLK 349 (349)
Q Consensus 346 ~q~~ 349 (349)
+|+|
T Consensus 77 ~qk~ 80 (81)
T PF01556_consen 77 EQKE 80 (81)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.77 E-value=3.7e-19 Score=182.58 Aligned_cols=72 Identities=42% Similarity=0.711 Sum_probs=67.1
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE 73 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 73 (349)
.+++||++|||+++|+..+||+|||+||++||||+|+ .+.++|++|++||+|||||.+|+.||+||..++..
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 4689999999999999999999999999999999997 46789999999999999999999999999987653
No 39
>KOG0716|consensus
Probab=99.77 E-value=2.3e-19 Score=160.57 Aligned_cols=70 Identities=61% Similarity=0.963 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK 72 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 72 (349)
..|+|+||||+++|+.++||||||+|+++||||+++ ++.++|++||+||++|+||.+|..||.||+.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 357999999999999999999999999999999985 4789999999999999999999999999987753
No 40
>KOG0718|consensus
Probab=99.76 E-value=5.7e-19 Score=167.84 Aligned_cols=74 Identities=54% Similarity=0.889 Sum_probs=68.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG 76 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~ 76 (349)
+.|||.+|+|+++||.+||++|||++++-||||++- .|++.|+.|.+||||||||.+|++||.||++|++-.+.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gw 87 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGW 87 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccCc
Confidence 569999999999999999999999999999999973 36889999999999999999999999999999984333
No 41
>KOG0691|consensus
Probab=99.76 E-value=8.1e-19 Score=162.33 Aligned_cols=89 Identities=52% Similarity=0.829 Sum_probs=77.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCC
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGG 79 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g 79 (349)
+.|||++|||+.+|+..||++|||+.|++||||+|| .|.++|+.+.+||+||+|+.+|+.||.+|..+.... +
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----~ 79 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----G 79 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch----h
Confidence 689999999999999999999999999999999996 478999999999999999999999999998765332 3
Q ss_pred CCChhhHHHhhhcCCC
Q psy4972 80 ADFSDDLISQLFGGRL 95 (349)
Q Consensus 80 ~~~~~d~f~~~fg~~~ 95 (349)
+.+..++|.+.|++..
T Consensus 80 ~~d~~~~~r~~f~~dl 95 (296)
T KOG0691|consen 80 REDQADGFRKKFGSDL 95 (296)
T ss_pred hhhHHHHHHHHhhhhh
Confidence 4456688888887543
No 42
>KOG0717|consensus
Probab=99.74 E-value=1.3e-18 Score=165.29 Aligned_cols=71 Identities=55% Similarity=0.798 Sum_probs=65.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK 72 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 72 (349)
.++.||++|||.++|+..+||++||+|||+||||+|| ++.++|+.|+.||+|||||..|++||..-++-+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 4688999999999999999999999999999999997 4789999999999999999999999987664443
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.3e-17 Score=144.17 Aligned_cols=191 Identities=30% Similarity=0.384 Sum_probs=125.1
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccc-ccccccccC
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYG-IQGIKEKAG 76 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G-~~~~~~~~~ 76 (349)
...+||+||||+++|+..||++|||++|++||||+++. +.++|+.|++||++|+|+.+|+.||.++ .........
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~~~~~~~~~~~ 83 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIGADNYFPGKSY 83 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhcccccCccccc
Confidence 35799999999999999999999999999999999974 5699999999999999999999999973 322211110
Q ss_pred --CC---CC--CChhhHHHhhhcCCC-----CC----CCCCCCC-----------CCCCCCCCCC-CeeeeEEeChhhhh
Q psy4972 77 --GG---GA--DFSDDLISQLFGGRL-----FG----MGGPFGG-----------HSRGRPHRGE-DTVHPLKVSLEDLY 128 (349)
Q Consensus 77 --~~---g~--~~~~d~f~~~fg~~~-----~~----~g~~~~~-----------~~~~~~~~~~-d~~~~l~vsl~e~~ 128 (349)
.. .. ....+++...++... .. +...... .......... +....+.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (237)
T COG2214 84 RESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSRGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEAL 163 (237)
T ss_pred cccccccccccccHHHHHHhhcccccccccccchhhhcccccccccccccccccccccccccccccceeeeeeccHHHHh
Confidence 00 01 123344444433210 00 0000000 0000000000 23333444444444
Q ss_pred cCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972 129 NGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGR 208 (349)
Q Consensus 129 ~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~ 208 (349)
.+....+.+.
T Consensus 164 ~~~~~~~~~~---------------------------------------------------------------------- 173 (237)
T COG2214 164 AGVKKAVARL---------------------------------------------------------------------- 173 (237)
T ss_pred cCcceeeecc----------------------------------------------------------------------
Confidence 4433332221
Q ss_pred cEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCcccccccee
Q psy4972 209 KTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINL 267 (349)
Q Consensus 209 g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL 267 (349)
......+.+|.++..+..+++.+.+.... +..++.+..+..++|+.|..++.++
T Consensus 174 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 174 ----LGKALKSTIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred ----ccccccccCCcccccCceeeecccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence 11122378999999999999999998877 7789999999999999999999998
No 44
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.72 E-value=7.7e-18 Score=122.23 Aligned_cols=60 Identities=57% Similarity=0.951 Sum_probs=56.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhh
Q psy4972 5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYD 64 (349)
Q Consensus 5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD 64 (349)
|||+||||+++++.++|++||+++++++|||+++. +.+.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999999864 4599999999999999999999998
No 45
>KOG0719|consensus
Probab=99.70 E-value=1.4e-17 Score=145.61 Aligned_cols=67 Identities=57% Similarity=0.902 Sum_probs=62.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc-----chHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP-----EAGDKFKEISFAYEVLSDEKKRATYDRYGIQ 69 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 69 (349)
.+|+|+||||.++|+..+|++||++||++||||+++ ++.++|+.++.||+||+|.++|+.||..|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 469999999999999999999999999999999996 3678999999999999999999999998864
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.70 E-value=2.5e-17 Score=138.53 Aligned_cols=85 Identities=28% Similarity=0.438 Sum_probs=72.6
Q ss_pred cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCCC
Q psy4972 4 TKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGAD 81 (349)
Q Consensus 4 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~~ 81 (349)
+.+|++|||+++| |.++||+|||++|+++|||+++ +.++|++|++||++|+|+.+|..||.+|........ .
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg-~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~-----~ 78 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG-DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE-----D 78 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc-hhHHHHHHHHHHHHHhhHHHhccccccCCccccccc-----c
Confidence 5789999999999 9999999999999999999975 468999999999999999999999999976543221 2
Q ss_pred ChhhHHHhhhcCC
Q psy4972 82 FSDDLISQLFGGR 94 (349)
Q Consensus 82 ~~~d~f~~~fg~~ 94 (349)
.+.++|.++||+.
T Consensus 79 ~~~~~f~~~fg~~ 91 (153)
T PHA03102 79 VPSGYVGATFGDR 91 (153)
T ss_pred cHHHHhhhhcCCc
Confidence 2667788888654
No 47
>KOG0624|consensus
Probab=99.69 E-value=2.8e-17 Score=151.82 Aligned_cols=70 Identities=47% Similarity=0.743 Sum_probs=62.7
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK 72 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 72 (349)
..+|||+||||.++|+..||.||||+||.+||||... .|+++|-.|..|-|||+||++|+.||. |++.+.
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 3689999999999999999999999999999999864 367889999999999999999999998 455443
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.62 E-value=8e-16 Score=109.99 Aligned_cols=55 Identities=67% Similarity=0.984 Sum_probs=51.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchh
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEK 58 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~ 58 (349)
++||++|||+++++.++|++||+++++++|||+++. +.+.|+.|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999873 6789999999999999985
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.59 E-value=1.9e-15 Score=106.00 Aligned_cols=52 Identities=69% Similarity=1.076 Sum_probs=49.6
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccc
Q psy4972 5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSD 56 (349)
Q Consensus 5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d 56 (349)
|||++|||+++++.++|+++|++|+++||||+++. +.+.|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999975 78999999999999986
No 50
>KOG0721|consensus
Probab=99.59 E-value=1.5e-15 Score=131.91 Aligned_cols=68 Identities=43% Similarity=0.800 Sum_probs=63.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQ 69 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 69 (349)
..-|+|+||||++.|+.+|||||||+|++++|||++| +.++.|.+|++||+.|+|+..|..|..||+.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 3468999999999999999999999999999999984 4678899999999999999999999999874
No 51
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.52 E-value=4.1e-14 Score=103.13 Aligned_cols=65 Identities=38% Similarity=0.891 Sum_probs=52.5
Q ss_pred ccCCCCCCCCCC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCcc
Q psy4972 143 CSTCNGKGSKSG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRK 209 (349)
Q Consensus 143 C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g 209 (349)
|+.|+|+|+.++ ...+|+.|+|+|++...++ .++++++++++|+.|+|+|+++ ..++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 899999999665 5889999999999998888 6677779999999999999999 899999999975
No 52
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8.7e-14 Score=132.10 Aligned_cols=119 Identities=23% Similarity=0.487 Sum_probs=86.3
Q ss_pred eeEeccCCCCCCCCC-----C---CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcC-----CCCCCcC
Q psy4972 139 KSVICSTCNGKGSKS-----G---ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNE-----KDRCGSC 205 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~-----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~-----~~~C~~C 205 (349)
..++|++|+|+|... + ..++|+.|+|+|. .+..+|+.|+|.|++... ..+--..
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~-------------~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~ 224 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGK-------------IIKDPCGKCKGKGRVKKKKSISVNIPAGVD 224 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCcccee-------------ECCCCCCCCCCCCeEeeeeEEEEECCCCCc
Confidence 567899999999642 2 2578999999998 457899999999996411 1111111
Q ss_pred CCccEEEeeE--------------------------------------------------------EEEEEecCCCccCc
Q psy4972 206 AGRKTLSVKK--------------------------------------------------------VLEVNVDKGMKEMQ 229 (349)
Q Consensus 206 ~g~g~~~~~~--------------------------------------------------------~~~v~Ip~G~~~G~ 229 (349)
.|......-. .++|+||||+++|+
T Consensus 225 ~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~ 304 (371)
T COG0484 225 DGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGE 304 (371)
T ss_pred cCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCc
Confidence 1111100000 67999999999999
Q ss_pred EEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEE
Q psy4972 230 KIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTT 270 (349)
Q Consensus 230 ~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 270 (349)
+++|+|+|.+.. +...|||||.|+|.-+..+......|+.+
T Consensus 305 ~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 305 VFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred EEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 999999999974 45579999999999999887766655443
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.45 E-value=1.3e-13 Score=118.56 Aligned_cols=64 Identities=27% Similarity=0.408 Sum_probs=56.6
Q ss_pred ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcchH------HHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPEAG------DKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~~~------~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
+.|||++|||++. ++..+|+++||+|++++|||++.... +.+..|++||++|+||.+|+.|+.-
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3699999999997 78999999999999999999986432 3477999999999999999999853
No 54
>KOG0550|consensus
Probab=99.45 E-value=9.2e-14 Score=131.37 Aligned_cols=65 Identities=55% Similarity=0.811 Sum_probs=60.6
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
+.+|||.||||+++|+..|||+|||++|+.||||+|. +++.+|+++-+||.+|+||.+|..||..
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 3589999999999999999999999999999999985 4678999999999999999999999973
No 55
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=3e-13 Score=117.06 Aligned_cols=62 Identities=29% Similarity=0.476 Sum_probs=55.6
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 4 TKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 4 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.|||++|||++. ++..+|+++||+|++++|||+.+. +.+.|..|++||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999996 688999999999999999999642 34679999999999999999999984
No 56
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.41 E-value=2e-13 Score=109.16 Aligned_cols=54 Identities=26% Similarity=0.419 Sum_probs=49.6
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLS 55 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~ 55 (349)
|...++|+||||+++|+.+||++|||+|++++|||++ ++.+.|++|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999999999999985 56789999999999985
No 57
>KOG0722|consensus
Probab=99.41 E-value=8e-14 Score=123.55 Aligned_cols=64 Identities=45% Similarity=0.771 Sum_probs=59.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
..|+|++|||+++|+.+||.+|||+||+++|||+++ ++.+.|..|.+|||+|.|.+.|..||-+
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 368999999999999999999999999999999985 4567899999999999999999999965
No 58
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=4.5e-13 Score=115.77 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=58.9
Q ss_pred CCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 1 MADTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
|...+||++|||++. .+..+|+++||+|++++|||++.. +.+.|..||+||++|+||.+|+.|+.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 678999999999997 568999999999999999999742 34679999999999999999999995
No 59
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.4e-13 Score=130.82 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=49.9
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEe
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTE 271 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l 271 (349)
.++|+||+|+++|++++|+|+|.+.. ++.+|||||+|++..|+.|++++.+|+.++
T Consensus 304 ~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 304 TTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred EEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999999864 356899999999999999999998876653
No 60
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=1e-12 Score=114.01 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=55.8
Q ss_pred ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
..|||++|||++. ++..+|+++||+|++++|||+++. +.+.+..||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 5799999999995 689999999999999999999752 23446899999999999999999994
No 61
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=9.7e-13 Score=127.47 Aligned_cols=56 Identities=13% Similarity=0.310 Sum_probs=50.6
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE 271 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l 271 (349)
.++|+||+|+++|++++|+|+|.+.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 297 ~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 297 KYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred eEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999998755 46899999999999999999999887764
No 62
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1e-12 Score=127.42 Aligned_cols=57 Identities=26% Similarity=0.336 Sum_probs=49.9
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEee
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTET 272 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~ 272 (349)
.++|.||+|+++|++++|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++.
T Consensus 291 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 291 ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998754 468999999999999999999887776543
No 63
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=2.6e-12 Score=124.42 Aligned_cols=55 Identities=18% Similarity=0.416 Sum_probs=48.3
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCccccccceeEEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDRFQRQGINLVTT 270 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 270 (349)
.++|+||+|+++|++++|+|+|.+.++. ..|||+|+|++..|+.|++++..|+.+
T Consensus 294 ~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999999987554 469999999999999999988765544
No 64
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.1e-12 Score=127.52 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=49.3
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE 271 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l 271 (349)
.++|+||+|+++|++++|+|+|.+..+ ...|||||+++|..++.|++++.+|+.++
T Consensus 292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 292 KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998654 45799999999999999999998776654
No 65
>KOG0720|consensus
Probab=99.33 E-value=8.8e-13 Score=126.04 Aligned_cols=64 Identities=44% Similarity=0.698 Sum_probs=61.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~--~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+|+|.+|||+.+++.++|||.||++|+.-||||| +.|+|.|+.+..|||+|+|+.+|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 47999999999999999999999999999999998 57899999999999999999999999974
No 66
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=4.1e-12 Score=123.48 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=49.6
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE 271 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l 271 (349)
.++|+||+|+++|++++|+|+|.+..+ +..|||||+|+|..++.|++++.+|+.++
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998653 46799999999999999999998877654
No 67
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=6.1e-12 Score=122.85 Aligned_cols=118 Identities=24% Similarity=0.499 Sum_probs=82.9
Q ss_pred eeEeccCCCCCCCCC------CCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCC-------------
Q psy4972 139 KSVICSTCNGKGSKS------GATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK------------- 199 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~------------- 199 (349)
....|+.|+|+|... ....+|+.|+|+|.. +..+|+.|.|.|.+...+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 255 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSI-------------IEDPCEECKGTGVTTRTRTINVRIPPGVEDG 255 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEE-------------eCCcCCCCCCCeEEEEeeeeEEEeCCCCCCC
Confidence 346799999999653 125789999999983 456899999998773100
Q ss_pred ---------CCCCcC--CCccEEEee-------------------------------------EEEEEEecCCCccCcEE
Q psy4972 200 ---------DRCGSC--AGRKTLSVK-------------------------------------KVLEVNVDKGMKEMQKI 231 (349)
Q Consensus 200 ---------~~C~~C--~g~g~~~~~-------------------------------------~~~~v~Ip~G~~~G~~i 231 (349)
+.-... .|.-++.-. ..++|+||+|+++|++|
T Consensus 256 ~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~i 335 (392)
T PRK14279 256 QRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRIL 335 (392)
T ss_pred cEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEE
Confidence 000000 011011000 05789999999999999
Q ss_pred EEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEE
Q psy4972 232 YFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 232 ~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
+|+|+|.+..++..|||||+|+|.-++.++.+...++.
T Consensus 336 ri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~~~l~ 373 (392)
T PRK14279 336 RVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAAEALE 373 (392)
T ss_pred EECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 99999999766678999999999988877666554443
No 68
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=7.4e-12 Score=121.55 Aligned_cols=55 Identities=11% Similarity=0.270 Sum_probs=46.9
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTT 270 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 270 (349)
.++|+||+|+++|++++|+|+|.+.++ ..+|||||+++|..+..|+.+...++.+
T Consensus 293 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~ 348 (372)
T PRK14300 293 KVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEE 348 (372)
T ss_pred EEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999999998754 5689999999999998887776554433
No 69
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=6.9e-12 Score=121.79 Aligned_cols=55 Identities=15% Similarity=0.327 Sum_probs=47.2
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTT 270 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 270 (349)
.++|+||+|+++|++++|+|+|.+..+ ...|||||+++|..|+.++.+..+++.+
T Consensus 291 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999998754 4579999999999998888777655544
No 70
>PHA02624 large T antigen; Provisional
Probab=99.25 E-value=5.7e-12 Score=126.20 Aligned_cols=59 Identities=32% Similarity=0.531 Sum_probs=56.2
Q ss_pred cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhh
Q psy4972 4 TKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATY 63 (349)
Q Consensus 4 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~Y 63 (349)
+++|++|||+++| +.++||+|||++|++||||++ +++++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 6899999999999 999999999999999999997 4678999999999999999999999
No 71
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.3e-11 Score=120.56 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=48.0
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE 271 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l 271 (349)
.++|+||+|+++|++++|+|+|.+..+ ..+|||||+|+|..++.++.++..|+.++
T Consensus 307 ~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 307 TCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred EEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998754 46899999999999998888777665443
No 72
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.9e-11 Score=118.59 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=46.0
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|+||+|+++|++++|+|+|.+.++. ..|||||+++|..|+.|+.+...++.
T Consensus 286 ~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~ 340 (369)
T PRK14288 286 ELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLE 340 (369)
T ss_pred EEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999999987654 46999999999999988877654443
No 73
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.23 E-value=6.2e-12 Score=116.45 Aligned_cols=54 Identities=54% Similarity=0.734 Sum_probs=49.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----------chHHHHHHHHHHHHhccc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----------EAGDKFKEISFAYEVLSD 56 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----------~~~~~f~~i~~Ay~~L~d 56 (349)
..++|++|||+++||.+|||+|||+|+++||||++. .++++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999952 256899999999999975
No 74
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.4e-11 Score=119.58 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=48.1
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE 271 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l 271 (349)
.++|+||+|+++|++++|+|+|.+..+ ...|||||+|+|..++.++++...|+.++
T Consensus 289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999998654 45799999999999999988876655443
No 75
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.22 E-value=1.8e-11 Score=118.38 Aligned_cols=53 Identities=11% Similarity=0.328 Sum_probs=46.3
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLV 268 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~ 268 (349)
.++|.||+|+++|++++|+|+|.+..+ ..+|||||+++|..++.+++++.+++
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 578999999999999999999998754 36899999999999998888776554
No 76
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.1e-11 Score=118.93 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=46.2
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTT 270 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 270 (349)
.++|+||+|+++|++++|+|+|.+..++.+|||||+++|.-+..++.....++.+
T Consensus 314 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~ 368 (389)
T PRK14295 314 PVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREALEA 368 (389)
T ss_pred EEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999999987666789999999999887766665544433
No 77
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=3e-11 Score=117.51 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=44.8
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|.||+|+++|++++|+|+|.+..+ ...|||||+++|.-+..++.+...++.
T Consensus 291 ~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~ 345 (378)
T PRK14278 291 PSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLR 345 (378)
T ss_pred eEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 679999999999999999999998643 467999999999988777666554443
No 78
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.4e-11 Score=118.20 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=49.2
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCCC--CCccEEEEEEEccCCccccccceeEEEe
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQ--EPGDVIIVLEQKPHDRFQRQGINLVTTE 271 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~--~~GDl~v~i~v~~~~~f~r~g~dL~~~l 271 (349)
.++|+||+|+++|++++|+|+|.+..++ ..|||||.++|..++.+++++.+++.++
T Consensus 294 ~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 294 PVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999986543 5799999999999999999998776654
No 79
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3e-11 Score=117.28 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=45.7
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|+||+|+++|++++|+|+|.+..+ ...|||||+|+|.-++.++.+..+++.
T Consensus 298 ~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~ 352 (372)
T PRK14286 298 KAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIE 352 (372)
T ss_pred EEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999999998654 457999999999988877776665443
No 80
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.3e-11 Score=119.08 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=44.8
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|+||+|+++|++++|+|+|.+..+ ...|||||+++|.-+..++.+...++.
T Consensus 313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~ 367 (397)
T PRK14281 313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLK 367 (397)
T ss_pred cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 578999999999999999999998654 467999999999988777666654443
No 81
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=3.2e-11 Score=117.49 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=45.0
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|+||+|+++|++++|+|+|.+..+ ..+|||||+|+|..+..++.+...++.
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~ 351 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALK 351 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999999998754 467999999999988877666554443
No 82
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.18 E-value=1.4e-11 Score=117.23 Aligned_cols=67 Identities=43% Similarity=0.807 Sum_probs=61.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRYGIQG 70 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 70 (349)
-|+|+||||+.+++..+||++||+|++++|||+-+. -+|++.+|++||+.|+|...|+.|-.||...
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 489999999999999999999999999999999652 4688999999999999999999999998643
No 83
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=4.9e-11 Score=116.00 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=44.7
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|+||+|+++|++++|+|+|.+..+ ...|||||+++|..++.++.+...++.
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~ 348 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLR 348 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999999998653 467999999999988777665554443
No 84
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=6.5e-11 Score=115.36 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=44.2
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLV 268 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~ 268 (349)
.++|+||+|+++|++++|+|+|.+..+ ...|||||+|+|.-++.++.+...++
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 352 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL 352 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence 578999999999999999999998654 46799999999998877766555443
No 85
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=6.3e-11 Score=115.75 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=43.3
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCcccccccee
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINL 267 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL 267 (349)
.++|.||+|+++|++++++|+|.+.++ +..|||||+|+|.-+..++.+...|
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~ 357 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQT 357 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHH
Confidence 689999999999999999999998654 4689999999999776666555433
No 86
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=8.6e-11 Score=114.05 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=43.6
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCC--CCCCccEEEEEEEccCCccccccceeE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQP--DQEPGDVIIVLEQKPHDRFQRQGINLV 268 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDl~v~i~v~~~~~f~r~g~dL~ 268 (349)
.++|+||+++++|++++|+|+|.+.. .+..|||||+++|.-++.++.+...|+
T Consensus 301 ~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l 355 (372)
T PRK14296 301 DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELI 355 (372)
T ss_pred CEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHH
Confidence 58899999999999999999999743 245799999999998877766655443
No 87
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=9.6e-11 Score=113.90 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=46.2
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
..+|.||+|+++|++++|+|+|.+..+ ..+|||||+++|..++.|+.+...|+.
T Consensus 289 ~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 289 PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999999998754 467999999999999988877765554
No 88
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=1.2e-10 Score=113.68 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=44.0
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|.||+|+++|++++|+|+|.+..+ ...|||||+++|.-++.++.+..+++.
T Consensus 306 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~ 360 (386)
T PRK14277 306 KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLR 360 (386)
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence 468999999999999999999998644 457999999999977766666554443
No 89
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.10 E-value=1.2e-10 Score=114.43 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=43.5
Q ss_pred EEEEEecCC--CccCcEEEEcCCCCCCCC--CCCccEEEEEEEccC--CccccccceeE
Q psy4972 216 VLEVNVDKG--MKEMQKIYFRGEGDQQPD--QEPGDVIIVLEQKPH--DRFQRQGINLV 268 (349)
Q Consensus 216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~--~~~GDl~v~i~v~~~--~~f~r~g~dL~ 268 (349)
.+.|+||+| +++|++++|+|+|.+..+ +..|||||+++|.-+ ..++.+...++
T Consensus 302 ~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll 360 (421)
T PTZ00037 302 KLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEIL 360 (421)
T ss_pred eEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHH
Confidence 689999999 999999999999998643 357999999999977 66666554433
No 90
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=4e-10 Score=109.86 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.4
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCC
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHD 258 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~ 258 (349)
.++|+||+|+++|++++|+|+|.+..+ ..+|||||+++|.-+.
T Consensus 303 ~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 303 KEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 589999999999999999999998754 4679999999998765
No 91
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=3.2e-10 Score=110.42 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=44.5
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTT 270 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 270 (349)
.++|.||+|+++|++++|+|+|.+..+ ...|||||+++|.-++.++.+...++.+
T Consensus 297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~ 352 (378)
T PRK14283 297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLRE 352 (378)
T ss_pred eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 578999999999999999999998643 4679999999998777666655544433
No 92
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.96 E-value=1.4e-09 Score=94.12 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=55.1
Q ss_pred ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
+.|||++|||++. .+..+++++|++|.+++|||+... +.+.-..||+||.+|+||.+|+.|=-
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 4799999999997 899999999999999999999632 23456789999999999999998853
No 93
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.89 E-value=2.6e-09 Score=91.22 Aligned_cols=51 Identities=29% Similarity=0.448 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 16 ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 16 a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+..+|+++||+|++++|||+.+. +.+.|..||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 477899999999999999998532 457899999999999999999999964
No 94
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=9e-09 Score=96.85 Aligned_cols=71 Identities=27% Similarity=0.427 Sum_probs=63.6
Q ss_pred cccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCC
Q psy4972 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339 (349)
Q Consensus 260 f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~ 339 (349)
+.|.|.|+++.+.|||.||++|++++| +++++++.|+||+| +++|++++++|+|++. |||||+|+|.-+.
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 357899999999999999999999998 67888899999999 8999999999999862 9999999998554
Q ss_pred C
Q psy4972 340 S 340 (349)
Q Consensus 340 ~ 340 (349)
.
T Consensus 195 ~ 195 (291)
T PRK14299 195 V 195 (291)
T ss_pred C
Confidence 4
No 95
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.83 E-value=8.8e-09 Score=81.94 Aligned_cols=61 Identities=26% Similarity=0.698 Sum_probs=49.4
Q ss_pred eeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEe
Q psy4972 139 KSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSV 213 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~ 213 (349)
..+.|..|+|+|.. +|+.|+|+|.+.... ++ .++.+.+|+.|+|.|+. +|+.|+|++++..
T Consensus 40 ~~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 45789999999973 899999999876433 32 24688999999999975 4999999988754
No 96
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.1e-09 Score=92.77 Aligned_cols=65 Identities=42% Similarity=0.559 Sum_probs=58.5
Q ss_pred ccccccccCCCC---CCCHHHHHHHHHHHHHHhCCCCC-----cchHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972 3 DTKLYEVLGVSK---SASDQEIKKAYRKLAKEFHPDKN-----PEAGDKFKEISFAYEVLSDEKKRATYDRYG 67 (349)
Q Consensus 3 ~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~~hPd~~-----~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 67 (349)
..|+|.+|||+. .|++.+|.+|.++...+||||+. .+..+-|+.|+.||++|+|+.+|.+||.--
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 368999999997 58899999999999999999997 345788999999999999999999999754
No 97
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.76 E-value=7.7e-09 Score=78.47 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=37.6
Q ss_pred EEEEEEecCCCccCcEEEEcCCCCCCCC--CCCccEEEEEEEccCCccccc
Q psy4972 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPD--QEPGDVIIVLEQKPHDRFQRQ 263 (349)
Q Consensus 215 ~~~~v~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDl~v~i~v~~~~~f~r~ 263 (349)
+.++|+||+|+++|++++++|+|.+... ...|||+|+++|.-+..++.+
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~ 77 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPE 77 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHH
Confidence 4788889999999999999999997543 368999999999977766544
No 98
>KOG1150|consensus
Probab=98.72 E-value=1.5e-08 Score=87.28 Aligned_cols=60 Identities=40% Similarity=0.686 Sum_probs=54.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhh
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRAT 62 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~ 62 (349)
+-++|++|.|.+..+.++||+.||+|++..|||+||. |...|.-+.+||..|-|+.-|..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3578999999999999999999999999999999985 56789999999999999885543
No 99
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.67 E-value=8e-08 Score=91.09 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=62.6
Q ss_pred cccceeEEEeecCHHHHhCCcEEEE----ecCC--C-------cEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCc
Q psy4972 262 RQGINLVTTETITLTEALCGFTKVI----KHLD--D-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT 328 (349)
Q Consensus 262 r~g~dL~~~l~I~l~~al~G~~~~i----~~l~--g-------~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gd 328 (349)
+.|.|+++.+.|+|.|++.|+..+| ..++ | +++.|.||+| +++|++++++|+|+|..++ ..+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGENG-GPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCCCC-CCCcc
Confidence 4688999999999999999996655 3343 3 4689999999 8999999999999996543 35899
Q ss_pred EEEEEEEEcCCC
Q psy4972 329 LYIKFDVQFPES 340 (349)
Q Consensus 329 l~v~~~v~~P~~ 340 (349)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999998 765
No 100
>KOG1789|consensus
Probab=98.57 E-value=5.8e-08 Score=100.82 Aligned_cols=56 Identities=39% Similarity=0.664 Sum_probs=49.0
Q ss_pred CCccccccccCCCCCC----CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccc
Q psy4972 1 MADTKLYEVLGVSKSA----SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSD 56 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a----~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d 56 (349)
|..-+.|+||.|+-+- ..+.||++|++||.+|||||||+-.++|..+++|||.|+.
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 3446789999998642 4478999999999999999999999999999999999984
No 101
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.38 E-value=4.6e-07 Score=78.84 Aligned_cols=51 Identities=20% Similarity=0.492 Sum_probs=44.4
Q ss_pred eeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972 183 QARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR 234 (349)
Q Consensus 183 ~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~ 234 (349)
..+|+.|+|+|+++...++|+.|+|+|++..+....+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 457888888888885558899999999999999999999 999999999876
No 102
>KOG0568|consensus
Probab=98.18 E-value=1.6e-06 Score=76.46 Aligned_cols=54 Identities=31% Similarity=0.655 Sum_probs=48.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHH-hccch
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYE-VLSDE 57 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~-~L~d~ 57 (349)
+.||.+|||...|+.++++.||..|++++|||... .+.++|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999875 35789999999998 77643
No 103
>KOG0723|consensus
Probab=98.18 E-value=2.1e-06 Score=66.68 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=47.1
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccch
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDE 57 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~ 57 (349)
|..++.-.||||++.++.+.||+|+|++....|||+... .-.-..||||+++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-PYLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-HHHHHHHHHHHHHHhcc
Confidence 556677789999999999999999999999999999743 33345699999999754
No 104
>KOG0712|consensus
Probab=98.03 E-value=1.2e-05 Score=76.08 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=38.5
Q ss_pred EEEEEecCC--CccCcEEEEcCCCCCCCCCCCccEEEEEEEccCC
Q psy4972 216 VLEVNVDKG--MKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHD 258 (349)
Q Consensus 216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~ 258 (349)
.+++.++|| +.+|++.++.|+|++..+...|||||.+.|+-++
T Consensus 280 ~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 280 LLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred eEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 788999999 9999999999999997655599999999998666
No 105
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.85 E-value=8.4e-06 Score=80.79 Aligned_cols=12 Identities=42% Similarity=1.174 Sum_probs=6.4
Q ss_pred eeCCCCCCcceE
Q psy4972 184 ARCSDCQGEGEV 195 (349)
Q Consensus 184 ~~C~~C~G~G~~ 195 (349)
.+|+.|+|+|++
T Consensus 69 ~~c~~c~G~gkv 80 (715)
T COG1107 69 DTCPECGGTGKV 80 (715)
T ss_pred eecccCCCceeE
Confidence 355555555554
No 106
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.82 E-value=9.1e-05 Score=76.28 Aligned_cols=86 Identities=49% Similarity=0.856 Sum_probs=73.1
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCCC
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGAD 81 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~~ 81 (349)
+|||+||||+++|+.++||+|||+||++||||+++ .+.++|++|++||++|+||.+|+.||+||..+.... +++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~e---~gf~ 78 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDRE---DDFD 78 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccccc---cccc
Confidence 69999999999999999999999999999999986 567899999999999999999999999998765321 2344
Q ss_pred ChhhHHHhhhc
Q psy4972 82 FSDDLISQLFG 92 (349)
Q Consensus 82 ~~~d~f~~~fg 92 (349)
+..++|.+||+
T Consensus 79 f~~DIF~sfFe 89 (871)
T TIGR03835 79 FQADVFNSFFE 89 (871)
T ss_pred hhHHHHHHHhh
Confidence 44567777665
No 107
>KOG2813|consensus
Probab=97.77 E-value=2.9e-05 Score=71.68 Aligned_cols=60 Identities=33% Similarity=0.825 Sum_probs=41.6
Q ss_pred eEeccCCCCCCCCC--------------------CCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCC
Q psy4972 140 SVICSTCNGKGSKS--------------------GATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK 199 (349)
Q Consensus 140 ~~~C~~C~G~G~~~--------------------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 199 (349)
...|+.|+|+|... ++...|..|+|+|. .+|++|.|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence 46688999888422 12345777777775 37899999985
Q ss_pred CCCCcCCCccEEEeeEEEEEE
Q psy4972 200 DRCGSCAGRKTLSVKKVLEVN 220 (349)
Q Consensus 200 ~~C~~C~g~g~~~~~~~~~v~ 220 (349)
.+|.+|.|.|.......+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 469999998877766555444
No 108
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.57 E-value=3.3e-05 Score=56.09 Aligned_cols=42 Identities=38% Similarity=0.890 Sum_probs=29.8
Q ss_pred eeEeccCCCCCCCCCC----------CcccCCCCCccceEEEEEEecCccceEe-eeeCCCCCCcc
Q psy4972 139 KSVICSTCNGKGSKSG----------ATFTCASCRGCGFKIHHRIIGPNMTQQI-QARCSDCQGEG 193 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~~C~~C~G~G 193 (349)
....|+.|+|+|.... ...+|+.|+|+|. .+ ..+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~-------------~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGK-------------IIEKDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSE-------------E-TSSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceee-------------EECCCCCCCCCCcC
Confidence 3468999999996531 2568999999998 34 67999999986
No 109
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.00041 Score=69.17 Aligned_cols=73 Identities=26% Similarity=0.589 Sum_probs=53.3
Q ss_pred EeccCCCCCCCCCCCcccCCCCCccceEEEEEEe--------cCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEE
Q psy4972 141 VICSTCNGKGSKSGATFTCASCRGCGFKIHHRII--------GPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLS 212 (349)
Q Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~--------~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~ 212 (349)
..|+.|+|+|...-....|+.|+|+|.+...... +.-++.....+|+.|.|+|.+. -...|+.|.|+|.+.
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-VYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-EEeecccCCCceeEE
Confidence 4699999999877677889999999986433211 1112223467999999999885 367899999987765
Q ss_pred ee
Q psy4972 213 VK 214 (349)
Q Consensus 213 ~~ 214 (349)
.-
T Consensus 82 ~c 83 (715)
T COG1107 82 TC 83 (715)
T ss_pred ee
Confidence 43
No 110
>KOG2813|consensus
Probab=97.03 E-value=0.00037 Score=64.53 Aligned_cols=80 Identities=25% Similarity=0.615 Sum_probs=52.3
Q ss_pred hhhhcCCcceeeeeee---EeccCCCCCCCCCCCcccCCCCCccc--------eEEEEEEec-CccceEeeeeCCCCCCc
Q psy4972 125 EDLYNGKTTKLQLTKS---VICSTCNGKGSKSGATFTCASCRGCG--------FKIHHRIIG-PNMTQQIQARCSDCQGE 192 (349)
Q Consensus 125 ~e~~~G~~~~i~~~~~---~~C~~C~G~G~~~~~~~~C~~C~G~G--------~~~~~~~~~-~g~~~~~~~~C~~C~G~ 192 (349)
--++.|....+.+... ..|..|.|.|. ..|+.|+|.| .+......| +----.....|..|+|+
T Consensus 169 p~mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~ 243 (406)
T KOG2813|consen 169 PGMFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGR 243 (406)
T ss_pred CCcccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCC
Confidence 3455555555555543 56999999995 5799999999 332233333 11111245679999999
Q ss_pred ceEEcCCCCCCcCCCccEEEee
Q psy4972 193 GEVMNEKDRCGSCAGRKTLSVK 214 (349)
Q Consensus 193 G~~~~~~~~C~~C~g~g~~~~~ 214 (349)
|. .+|++|+|.|.+.-.
T Consensus 244 G~-----~~C~tC~grG~k~C~ 260 (406)
T KOG2813|consen 244 GI-----KECHTCKGRGKKPCT 260 (406)
T ss_pred Cc-----ccCCcccCCCCcccc
Confidence 94 569999998876543
No 111
>KOG3192|consensus
Probab=96.63 E-value=0.0022 Score=53.61 Aligned_cols=63 Identities=25% Similarity=0.574 Sum_probs=50.4
Q ss_pred ccccccccCCCC--CCCHHHHHHHHHHHHHHhCCCCC--c------chHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 3 DTKLYEVLGVSK--SASDQEIKKAYRKLAKEFHPDKN--P------EAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 3 ~~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~hPd~~--~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.++||.++|... ...+.....-|.-..+++|||+. + -+.+.-.++++||.+|.||.+|+.|=.
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 368999987544 45666677689999999999983 2 256778999999999999999999863
No 112
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.42 E-value=0.0019 Score=51.57 Aligned_cols=39 Identities=36% Similarity=0.895 Sum_probs=31.3
Q ss_pred eccCCCCCCCCC----C---CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972 142 ICSTCNGKGSKS----G---ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM 196 (349)
Q Consensus 142 ~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 196 (349)
.|+.|+|+|... + ...+|+.|+|+|.. .|+.|.|+|.+.
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------------~C~~C~G~G~~~ 99 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------------TCTTCQGSGIQP 99 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------------eCCCCCCCEEEe
Confidence 799999999643 1 15689999999961 499999999875
No 113
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.86 E-value=0.0053 Score=53.64 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=16.0
Q ss_pred eEeccCCCCCCCCCCCcccCCCCCccceE
Q psy4972 140 SVICSTCNGKGSKSGATFTCASCRGCGFK 168 (349)
Q Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 168 (349)
...|+.|+|+|.......+|+.|+|+|.+
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence 55666666666543323456666665554
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.022 Score=49.53 Aligned_cols=62 Identities=27% Similarity=0.435 Sum_probs=48.7
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 5 ~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
+++...+..+.+ ..+..+..|+.+.+.+|||+... +.+.+..++.||.+|.||-+|+.|=.-
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 455566666654 34568999999999999999742 235788999999999999999998753
No 115
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.75 E-value=0.039 Score=45.27 Aligned_cols=54 Identities=28% Similarity=0.285 Sum_probs=38.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchh
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEK 58 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~ 58 (349)
.....||+|++..+.++|.+.|.+|....+|++. ++.-.-..|..|.|.|..+.
T Consensus 58 ~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 58 DEARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999976 44444455777888887554
No 116
>KOG0431|consensus
Probab=93.03 E-value=0.11 Score=51.89 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCc
Q psy4972 11 GVSKSASDQEIKKAYRKLAKEFHPDKNP 38 (349)
Q Consensus 11 gv~~~a~~~~Ik~ayr~l~~~~hPd~~~ 38 (349)
.+..=.+.++|||||||..+..||||.+
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlq 422 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQ 422 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCccccc
Confidence 3444568999999999999999999975
No 117
>KOG2824|consensus
Probab=92.66 E-value=0.17 Score=46.57 Aligned_cols=65 Identities=25% Similarity=0.545 Sum_probs=43.9
Q ss_pred ChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCC
Q psy4972 123 SLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRC 202 (349)
Q Consensus 123 sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C 202 (349)
-|..++.|.. -...-.|..|.|.+. .+|..|+|+=++... .... ..-.+|+.|+-.|-+. |
T Consensus 216 kL~~lL~~~p----~~~~~~C~~CGg~rF-----lpC~~C~GS~kv~~~-~~~~----~~~~rC~~CNENGLvr-----C 276 (281)
T KOG2824|consen 216 KLGKLLKGIP----CEGGGVCESCGGARF-----LPCSNCHGSCKVHEE-EEDD----GGVLRCLECNENGLVR-----C 276 (281)
T ss_pred hHHHHHhcCC----CCCCCcCCCcCCcce-----EecCCCCCceeeeee-ccCC----CcEEECcccCCCCcee-----C
Confidence 3666666665 223356999998874 579999999876542 0111 2345899999999765 8
Q ss_pred CcCC
Q psy4972 203 GSCA 206 (349)
Q Consensus 203 ~~C~ 206 (349)
+.|.
T Consensus 277 p~Cs 280 (281)
T KOG2824|consen 277 PVCS 280 (281)
T ss_pred CccC
Confidence 8885
No 118
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.083 Score=45.89 Aligned_cols=34 Identities=53% Similarity=0.729 Sum_probs=32.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN 37 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~ 37 (349)
.+.|.+|++...++..+|+++|+++....|||+-
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a 146 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKA 146 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHH
Confidence 5789999999999999999999999999999984
No 119
>KOG0715|consensus
Probab=90.42 E-value=0.35 Score=45.53 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEc
Q psy4972 293 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQF 337 (349)
Q Consensus 293 ~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~ 337 (349)
.+.|.+|++ +..+.++++++.|- .||+|++.|.-
T Consensus 234 ~i~i~~~~g--~~~~~~l~~~~~~~---------~~l~v~~~v~~ 267 (288)
T KOG0715|consen 234 DIMIVLPAG--VRSADTLRFAGHGN---------DDLFVRLIVAK 267 (288)
T ss_pred eEEeecCcc--cccccEEEEecCCc---------ceEEEEEEecc
Confidence 467788888 78999999998863 29999998874
No 120
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=90.28 E-value=0.27 Score=41.50 Aligned_cols=38 Identities=24% Similarity=0.592 Sum_probs=21.9
Q ss_pred hhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEE
Q psy4972 124 LEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKI 169 (349)
Q Consensus 124 l~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 169 (349)
|.+++.+.... .....|..|.|.+. .+|..|+|+=++.
T Consensus 86 L~~lL~~~~~~---~~~~~C~~Cgg~rf-----v~C~~C~Gs~k~~ 123 (147)
T cd03031 86 LRKLLKGIRAR---AGGGVCEGCGGARF-----VPCSECNGSCKVF 123 (147)
T ss_pred HHHHHhhcccc---cCCCCCCCCCCcCe-----EECCCCCCcceEE
Confidence 56666665221 12345777777763 4577777776653
No 121
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=89.17 E-value=0.74 Score=40.69 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccch
Q psy4972 13 SKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDE 57 (349)
Q Consensus 13 ~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~ 57 (349)
+++||.+||.+|+.++..+| .++++.-.+|..||+.+.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y-----~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY-----AGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999988 34455667799999876543
No 122
>PF13446 RPT: A repeated domain in UCH-protein
Probab=89.15 E-value=0.39 Score=34.07 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=34.1
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccc
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSD 56 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d 56 (349)
|.-.++|+.|||+++.+.+.|-.+|+.... - +| .....+.+|..++.+
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~----~P---~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-D----DP---SQKDTLREALRVIAE 49 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-c----Ch---HhHHHHHHHHHHHHH
Confidence 344678999999999999999999999777 2 22 223344555555543
No 123
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=86.28 E-value=3.2 Score=35.55 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.2
Q ss_pred EEEEEecCCCccCcEEEEcC
Q psy4972 216 VLEVNVDKGMKEMQKIYFRG 235 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g 235 (349)
.+.++||||...|..-.+.|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 67888888888888877766
No 124
>KOG2824|consensus
Probab=85.48 E-value=0.81 Score=42.20 Aligned_cols=40 Identities=33% Similarity=0.684 Sum_probs=27.6
Q ss_pred ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEc------CCCCCCcCCCccEEE
Q psy4972 157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMN------EKDRCGSCAGRKTLS 212 (349)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~g~g~~~ 212 (349)
..|..|+|.+.+ +|..|+|+-++.. .-..|..|+-.|.+.
T Consensus 230 ~~C~~CGg~rFl----------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL----------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE----------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 468888877753 6888888877764 234688887766654
No 125
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=84.84 E-value=3.4 Score=36.42 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.0
Q ss_pred EEEEEecCC-CccCcEEEEcC
Q psy4972 216 VLEVNVDKG-MKEMQKIYFRG 235 (349)
Q Consensus 216 ~~~v~Ip~G-~~~G~~i~~~g 235 (349)
.+.++|||| +..|..-++.|
T Consensus 80 El~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 80 ELGLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred ceEEEECCCccCCceEEeeHh
Confidence 678888888 68888888865
No 126
>PRK04023 DNA polymerase II large subunit; Validated
Probab=84.30 E-value=1.1 Score=48.23 Aligned_cols=65 Identities=22% Similarity=0.470 Sum_probs=45.3
Q ss_pred Chhhhhc-CCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCC
Q psy4972 123 SLEDLYN-GKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201 (349)
Q Consensus 123 sl~e~~~-G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~ 201 (349)
++.+|+. +...++.+.. ..|+.|+-.+ ....|+.|+..- .....|+.|+-... ...
T Consensus 609 ~i~~A~~~~g~~eVEVg~-RfCpsCG~~t----~~frCP~CG~~T--------------e~i~fCP~CG~~~~----~y~ 665 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIGR-RKCPSCGKET----FYRRCPFCGTHT--------------EPVYRCPRCGIEVE----EDE 665 (1121)
T ss_pred cHHHHHhcCCceeecccC-ccCCCCCCcC----CcccCCCCCCCC--------------CcceeCccccCcCC----CCc
Confidence 5788887 6777777665 4599998875 346899998762 12347999965543 356
Q ss_pred CCcCCCccE
Q psy4972 202 CGSCAGRKT 210 (349)
Q Consensus 202 C~~C~g~g~ 210 (349)
|++|.-...
T Consensus 666 CPKCG~El~ 674 (1121)
T PRK04023 666 CEKCGREPT 674 (1121)
T ss_pred CCCCCCCCC
Confidence 999986533
No 127
>KOG0724|consensus
Probab=83.47 E-value=1.1 Score=42.86 Aligned_cols=51 Identities=37% Similarity=0.623 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCc-------chHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 16 ASDQEIKKAYRKLAKEFHPDKNP-------EAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 16 a~~~~Ik~ayr~l~~~~hPd~~~-------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
++..+|..+|+..++..||++.. ...+.|+.|.+||++|++..+|..+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 56788999999999999999874 2457799999999999997766666654
No 128
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=82.69 E-value=1.9 Score=47.70 Aligned_cols=69 Identities=17% Similarity=0.367 Sum_probs=44.0
Q ss_pred Chhhhh--------cCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcce
Q psy4972 123 SLEDLY--------NGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE 194 (349)
Q Consensus 123 sl~e~~--------~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 194 (349)
++.+|+ .+...++.+. ...|+.|...... ..|+.|+..=. ....|+.|+..=.
T Consensus 643 ~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGaev~ 703 (1337)
T PRK14714 643 DVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAEVP 703 (1337)
T ss_pred cHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCccC
Confidence 578888 5556666665 4679999986432 48999987632 1237999988410
Q ss_pred E-EcCCCCCCcCCCccE
Q psy4972 195 V-MNEKDRCGSCAGRKT 210 (349)
Q Consensus 195 ~-~~~~~~C~~C~g~g~ 210 (349)
. .+....|+.|...-.
T Consensus 704 ~des~a~~CP~CGtplv 720 (1337)
T PRK14714 704 PDESGRVECPRCDVELT 720 (1337)
T ss_pred CCccccccCCCCCCccc
Confidence 0 000237999986543
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.23 E-value=1.5 Score=36.92 Aligned_cols=39 Identities=33% Similarity=0.789 Sum_probs=30.6
Q ss_pred ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCC-------CCCCcCCCccEE
Q psy4972 157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK-------DRCGSCAGRKTL 211 (349)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~g~g~~ 211 (349)
..|..|.|.+.+ +|+.|+|+-++.... ..|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rfv----------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARFV----------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCeE----------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 469999998863 799999998887544 489999877654
No 130
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.13 E-value=1.2 Score=48.62 Aligned_cols=33 Identities=21% Similarity=0.537 Sum_probs=16.8
Q ss_pred cCCCCCccceEEEEEEecCccceEeeeeCCCCCCcce
Q psy4972 158 TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE 194 (349)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 194 (349)
.|+.|.|.|.+....+ ++.....+|+.|+|+.+
T Consensus 738 ~C~~C~G~G~~~~~~~----f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMH----FLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEcc----CCCCcccCCCCcCCcee
Confidence 4777777776543211 22233445555555544
No 131
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=72.99 E-value=3.3 Score=45.38 Aligned_cols=33 Identities=21% Similarity=0.534 Sum_probs=16.6
Q ss_pred cCCCCCccceEEEEEEecCccceEeeeeCCCCCCcce
Q psy4972 158 TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE 194 (349)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 194 (349)
.|+.|.|.|.+....+. +..+..+|+.|+|+.+
T Consensus 740 ~C~~C~G~G~~~~~~~f----~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIKIEMHF----LPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEEEEecc----CCCccccCccccCccc
Confidence 47777777775533222 1122345555555443
No 132
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.70 E-value=1.9 Score=47.04 Aligned_cols=33 Identities=27% Similarity=0.644 Sum_probs=26.3
Q ss_pred eeeCCCCCCcceEE-------cCCCCCCcCCCccEEEeeE
Q psy4972 183 QARCSDCQGEGEVM-------NEKDRCGSCAGRKTLSVKK 215 (349)
Q Consensus 183 ~~~C~~C~G~G~~~-------~~~~~C~~C~g~g~~~~~~ 215 (349)
.-.|+.|.|.|++. ....+|+.|+|+++..+.-
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l 775 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETL 775 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHH
Confidence 35699999999985 2356999999998876653
No 133
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=68.82 E-value=3.2 Score=48.25 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=17.7
Q ss_pred cCCCCCccceEEEEEEecCccceEeeeeCCCCCCcce
Q psy4972 158 TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE 194 (349)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 194 (349)
.|+.|.|.|.+....+ |+..+..+|+.|+|+.+
T Consensus 1609 rC~~C~G~G~i~i~m~----fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRA----FYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecc----cCCCcccCCCCCCCcCC
Confidence 4777777776543222 22234455666666544
No 134
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=68.06 E-value=5.4 Score=42.54 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=8.0
Q ss_pred cCCCCCccceEEE
Q psy4972 158 TCASCRGCGFKIH 170 (349)
Q Consensus 158 ~C~~C~G~G~~~~ 170 (349)
.|..|.|.|.+..
T Consensus 732 RCe~C~GdG~ikI 744 (935)
T COG0178 732 RCEACQGDGVIKI 744 (935)
T ss_pred CCccccCCceEEE
Confidence 4666666666443
No 135
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=67.19 E-value=14 Score=31.68 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=14.3
Q ss_pred EEEEEecCCC-ccCcEEEEcC
Q psy4972 216 VLEVNVDKGM-KEMQKIYFRG 235 (349)
Q Consensus 216 ~~~v~Ip~G~-~~G~~i~~~g 235 (349)
.+.++||||. ..|..=++.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 6778888887 5666666765
No 136
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=64.42 E-value=2.2 Score=45.32 Aligned_cols=64 Identities=22% Similarity=0.453 Sum_probs=0.0
Q ss_pred hhhhhcCC--cceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCC
Q psy4972 124 LEDLYNGK--TTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201 (349)
Q Consensus 124 l~e~~~G~--~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~ 201 (349)
+.+|+.-. ..++.+.+ ..|+.|.-... ...|+.|+..-. ..-.|+.|+-.-. ...
T Consensus 638 i~~A~~~~~g~i~vei~~-r~Cp~Cg~~t~----~~~Cp~CG~~T~--------------~~~~Cp~C~~~~~----~~~ 694 (900)
T PF03833_consen 638 IQKAAKKGKGTIEVEIGR-RRCPKCGKETF----YNRCPECGSHTE--------------PVYVCPDCGIEVE----EDE 694 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCeeEEeeec-ccCcccCCcch----hhcCcccCCccc--------------cceeccccccccC----ccc
Confidence 45555543 34455543 45888876543 467888876543 3347888886432 458
Q ss_pred CCcCCCccE
Q psy4972 202 CGSCAGRKT 210 (349)
Q Consensus 202 C~~C~g~g~ 210 (349)
|++|.....
T Consensus 695 C~~C~~~~~ 703 (900)
T PF03833_consen 695 CPKCGRETT 703 (900)
T ss_dssp ---------
T ss_pred cccccccCc
Confidence 999976533
No 137
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=63.74 E-value=59 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=14.1
Q ss_pred cEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcC
Q psy4972 282 FTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG 314 (349)
Q Consensus 282 ~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g 314 (349)
+++.|| .+.+++||| ...|..-.|.|
T Consensus 75 a~i~IP-----El~~ei~pg--~~~g~itTVEG 100 (160)
T smart00709 75 ATISIP-----ELDLEIPPG--PLGGFITTVEG 100 (160)
T ss_pred cEEEee-----eeeEEecCC--CCCcEEEehHH
Confidence 455665 345666776 35555555543
No 138
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=60.41 E-value=1.9 Score=33.56 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=19.2
Q ss_pred ccCCCCCccceEEEEEEe--cCccceEeeeeCCCCCCcceE
Q psy4972 157 FTCASCRGCGFKIHHRII--GPNMTQQIQARCSDCQGEGEV 195 (349)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~--~~g~~~~~~~~C~~C~G~G~~ 195 (349)
..|..|+|.|.+....+. .+|+ ..-..|..|.|.|+.
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~--pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGV--PVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCC--chhhhhhhhcCCCCC
Confidence 346666666654332111 1122 233568888887765
No 139
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=57.43 E-value=6.6 Score=19.18 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcc
Q psy4972 43 KFKEISFAYEVLS 55 (349)
Q Consensus 43 ~f~~i~~Ay~~L~ 55 (349)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888774
No 140
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=53.76 E-value=8.1 Score=26.54 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=19.2
Q ss_pred CCCcEEEEEEEEcCCCCCCCccc
Q psy4972 325 EKGTLYIKFDVQFPESYFNNDAK 347 (349)
Q Consensus 325 ~~Gdl~v~~~v~~P~~~~ls~~q 347 (349)
..||+.|-|+|.+|+-.++|+++
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~e 48 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAE 48 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhH
Confidence 46999999999999986677654
No 141
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=52.42 E-value=5.7 Score=46.29 Aligned_cols=33 Identities=36% Similarity=0.716 Sum_probs=26.2
Q ss_pred eeeCCCCCCcceEE-------cCCCCCCcCCCccEEEeeE
Q psy4972 183 QARCSDCQGEGEVM-------NEKDRCGSCAGRKTLSVKK 215 (349)
Q Consensus 183 ~~~C~~C~G~G~~~-------~~~~~C~~C~g~g~~~~~~ 215 (349)
.-.|+.|.|.|++. ....+|..|+|+++..+.-
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L 1646 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQ 1646 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHH
Confidence 45699999999884 3456899999998876653
No 142
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=51.22 E-value=15 Score=34.87 Aligned_cols=20 Identities=30% Similarity=0.906 Sum_probs=9.8
Q ss_pred eCCCCCCcceEEcCCCCCCcCC
Q psy4972 185 RCSDCQGEGEVMNEKDRCGSCA 206 (349)
Q Consensus 185 ~C~~C~G~G~~~~~~~~C~~C~ 206 (349)
.|+.|...=... +..|+.|.
T Consensus 214 ~CslC~teW~~~--R~~C~~Cg 233 (309)
T PRK03564 214 HCNLCESEWHVV--RVKCSNCE 233 (309)
T ss_pred EcCCCCCccccc--CccCCCCC
Confidence 355555444443 44555554
No 143
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=50.04 E-value=21 Score=29.33 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=16.7
Q ss_pred eEEEEEEecCCCccCcEEEEcCC
Q psy4972 214 KKVLEVNVDKGMKEMQKIYFRGE 236 (349)
Q Consensus 214 ~~~~~v~Ip~G~~~G~~i~~~g~ 236 (349)
...+++.-+.+++.||.+.+.-+
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEEec
Confidence 35677777888888888877643
No 144
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=49.28 E-value=36 Score=27.28 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCC---cc----hHHHHHHHHHHHHhccc
Q psy4972 14 KSASDQEIKKAYRKLAKEFHPDKN---PE----AGDKFKEISFAYEVLSD 56 (349)
Q Consensus 14 ~~a~~~~Ik~ayr~l~~~~hPd~~---~~----~~~~f~~i~~Ay~~L~d 56 (349)
+..+..+++.|.|.+-++-|||.- |+ .++-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 456778999999999999999964 33 23446666665555543
No 145
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=48.92 E-value=24 Score=20.60 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHhCC
Q psy4972 17 SDQEIKKAYRKLAKEFHP 34 (349)
Q Consensus 17 ~~~~Ik~ayr~l~~~~hP 34 (349)
..++.+.+.|+.|+.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347889999999999993
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=48.34 E-value=18 Score=38.48 Aligned_cols=61 Identities=21% Similarity=0.475 Sum_probs=39.8
Q ss_pred cCCcceeeeee-----eEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCC
Q psy4972 129 NGKTTKLQLTK-----SVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCG 203 (349)
Q Consensus 129 ~G~~~~i~~~~-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~ 203 (349)
.|...-+-++| ...|..|.- ...|+.|...=.. ++. .-.-.|..|+-...+ ...|+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~-------v~~Cp~Cd~~lt~---H~~------~~~L~CH~Cg~~~~~---p~~Cp 479 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGY-------IAECPNCDSPLTL---HKA------TGQLRCHYCGYQEPI---PQSCP 479 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCC-------cccCCCCCcceEE---ecC------CCeeEeCCCCCCCCC---CCCCC
Confidence 34444455554 488999977 4789999876221 111 234578898887443 67899
Q ss_pred cCCCc
Q psy4972 204 SCAGR 208 (349)
Q Consensus 204 ~C~g~ 208 (349)
.|.+.
T Consensus 480 ~Cgs~ 484 (730)
T COG1198 480 ECGSE 484 (730)
T ss_pred CCCCC
Confidence 99876
No 147
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=47.44 E-value=14 Score=38.85 Aligned_cols=49 Identities=20% Similarity=0.558 Sum_probs=31.9
Q ss_pred EeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972 141 VICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGR 208 (349)
Q Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~ 208 (349)
..|+.|+-.- +.....|+.|+..-. ...|+.|+-.= ......|+.|...
T Consensus 2 ~~Cp~Cg~~n--~~~akFC~~CG~~l~---------------~~~Cp~CG~~~--~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN--PNNNRFCQKCGTSLT---------------HKPCPQCGTEV--PVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC--CCCCccccccCCCCC---------------CCcCCCCCCCC--CcccccccccCCc
Confidence 4699997753 223567999954321 24799998762 2336789999754
No 148
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=47.13 E-value=41 Score=26.36 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhh-cccc
Q psy4972 11 GVSKSAS-DQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYD-RYGI 68 (349)
Q Consensus 11 gv~~~a~-~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD-~~G~ 68 (349)
|+++++. ..++-+.+..++..+++ .+.+.+..+.+.| +.||.-++.|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 4555543 34466667777776665 3446788888888 68888888888 6654
No 149
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=47.10 E-value=30 Score=29.58 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=16.4
Q ss_pred ccCCCCCccceEEEEEEecCcc--ceEeeeeCCCCCC
Q psy4972 157 FTCASCRGCGFKIHHRIIGPNM--TQQIQARCSDCQG 191 (349)
Q Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~--~~~~~~~C~~C~G 191 (349)
..|+.|+..|......-.-|.| +..+...|+.|+=
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGy 38 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGY 38 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCC
Confidence 4688888888643332222333 2234456666653
No 150
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=44.86 E-value=87 Score=23.05 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc
Q psy4972 5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP 38 (349)
Q Consensus 5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~ 38 (349)
+.-+++++++-|+..||+.|-++..+++.=-..|
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 4456789999999999999999999988655444
No 151
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.33 E-value=20 Score=36.55 Aligned_cols=61 Identities=21% Similarity=0.536 Sum_probs=36.7
Q ss_pred CCcceeeeee-----eEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCc
Q psy4972 130 GKTTKLQLTK-----SVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGS 204 (349)
Q Consensus 130 G~~~~i~~~~-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~ 204 (349)
|...-+-+++ ...|..|.-. ..|+.|.+.=.. +.. ...-.|..|+-.-. ....|+.
T Consensus 198 g~qvLvflnrrGya~~~~C~~Cg~~-------~~C~~C~~~l~~--h~~-------~~~l~Ch~Cg~~~~---~~~~Cp~ 258 (505)
T TIGR00595 198 GEQSILFLNRRGYSKNLLCRSCGYI-------LCCPNCDVSLTY--HKK-------EGKLRCHYCGYQEP---IPKTCPQ 258 (505)
T ss_pred CCcEEEEEeCCcCCCeeEhhhCcCc-------cCCCCCCCceEE--ecC-------CCeEEcCCCcCcCC---CCCCCCC
Confidence 4444444444 4679988764 689999864221 111 12346888875443 3578999
Q ss_pred CCCcc
Q psy4972 205 CAGRK 209 (349)
Q Consensus 205 C~g~g 209 (349)
|.+..
T Consensus 259 C~s~~ 263 (505)
T TIGR00595 259 CGSED 263 (505)
T ss_pred CCCCe
Confidence 98753
No 152
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=43.69 E-value=2e+02 Score=25.40 Aligned_cols=10 Identities=40% Similarity=0.740 Sum_probs=5.3
Q ss_pred cCCCCCccce
Q psy4972 158 TCASCRGCGF 167 (349)
Q Consensus 158 ~C~~C~G~G~ 167 (349)
.|+.|++.|.
T Consensus 2 ~Cp~C~~~~~ 11 (192)
T TIGR00310 2 DCPSCGGECE 11 (192)
T ss_pred cCCCCCCCCE
Confidence 3555655553
No 153
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=43.21 E-value=45 Score=23.02 Aligned_cols=13 Identities=15% Similarity=0.205 Sum_probs=8.5
Q ss_pred cccCCCCCccceE
Q psy4972 156 TFTCASCRGCGFK 168 (349)
Q Consensus 156 ~~~C~~C~G~G~~ 168 (349)
+..|+.|++.-+.
T Consensus 4 Wi~CP~CgnKTR~ 16 (55)
T PF14205_consen 4 WILCPICGNKTRL 16 (55)
T ss_pred EEECCCCCCccce
Confidence 4568888776653
No 154
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=41.97 E-value=40 Score=22.89 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=6.4
Q ss_pred cCCCCCccce
Q psy4972 158 TCASCRGCGF 167 (349)
Q Consensus 158 ~C~~C~G~G~ 167 (349)
+||-|+|...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 5666666665
No 155
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=41.42 E-value=59 Score=23.33 Aligned_cols=42 Identities=26% Similarity=0.257 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 23 KAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 23 ~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
+.+|...++-||+. ...+.-+.|.+.|..|++.++...+|..
T Consensus 14 ~~~r~~~~~~~p~~--~~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLK--ENRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566667778885 3456678899999999998887766653
No 156
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=41.11 E-value=15 Score=40.34 Aligned_cols=31 Identities=23% Similarity=0.640 Sum_probs=23.9
Q ss_pred eEeccCCCCCCCCC-------CCcccCCCCCccceEEE
Q psy4972 140 SVICSTCNGKGSKS-------GATFTCASCRGCGFKIH 170 (349)
Q Consensus 140 ~~~C~~C~G~G~~~-------~~~~~C~~C~G~G~~~~ 170 (349)
.-.|+.|.|.|... ....+|+.|+|+.....
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 35699999999653 23579999999997544
No 157
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=40.64 E-value=64 Score=22.04 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+.++...+..||+.+ ..+..+.+.+.|..|++.++...+|..
T Consensus 12 ~~~~~~~~~~~~~~~~--~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGLS--VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566777777888844 456778899999999987777666653
No 158
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=40.58 E-value=1.4e+02 Score=26.39 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=8.5
Q ss_pred eeeeEeccCCCCCC
Q psy4972 137 LTKSVICSTCNGKG 150 (349)
Q Consensus 137 ~~~~~~C~~C~G~G 150 (349)
+...+.|+.|+-.-
T Consensus 95 i~~yV~C~~C~~pd 108 (201)
T PRK12336 95 VDEYVICSECGLPD 108 (201)
T ss_pred HHheEECCCCCCCC
Confidence 44567777776543
No 159
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=40.48 E-value=24 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=12.9
Q ss_pred eeeEeccCCCCCCCCCCCcccCCCCCccc
Q psy4972 138 TKSVICSTCNGKGSKSGATFTCASCRGCG 166 (349)
Q Consensus 138 ~~~~~C~~C~G~G~~~~~~~~C~~C~G~G 166 (349)
+-...|.+|+..-........||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 68 PAQAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred CcEEEcccCCCEEecCCcCccCcCCCCCC
Confidence 34456777764433222222344444433
No 160
>PF14353 CpXC: CpXC protein
Probab=40.05 E-value=36 Score=27.56 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=8.4
Q ss_pred eeeCCCCCCcceE
Q psy4972 183 QARCSDCQGEGEV 195 (349)
Q Consensus 183 ~~~C~~C~G~G~~ 195 (349)
..+||.|+....+
T Consensus 38 ~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 38 SFTCPSCGHKFRL 50 (128)
T ss_pred EEECCCCCCceec
Confidence 4567777766654
No 161
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=39.16 E-value=12 Score=33.97 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=10.0
Q ss_pred eeCCCCCCcceEE
Q psy4972 184 ARCSDCQGEGEVM 196 (349)
Q Consensus 184 ~~C~~C~G~G~~~ 196 (349)
.+||+|.|.|++.
T Consensus 39 vtCPTCqGtGrIP 51 (238)
T PF07092_consen 39 VTCPTCQGTGRIP 51 (238)
T ss_pred CcCCCCcCCccCC
Confidence 3788888888775
No 162
>PRK05580 primosome assembly protein PriA; Validated
Probab=38.75 E-value=38 Score=35.91 Aligned_cols=61 Identities=25% Similarity=0.553 Sum_probs=37.1
Q ss_pred CCcceeeeee-----eEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCc
Q psy4972 130 GKTTKLQLTK-----SVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGS 204 (349)
Q Consensus 130 G~~~~i~~~~-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~ 204 (349)
|.+.-+-++| .+.|..|.-. ..|+.|.+.=. .+.. ...-.|..|+-.-. ....|+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~-------~~C~~C~~~l~--~h~~-------~~~l~Ch~Cg~~~~---~~~~Cp~ 426 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWV-------AECPHCDASLT--LHRF-------QRRLRCHHCGYQEP---IPKACPE 426 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCc-------cCCCCCCCcee--EECC-------CCeEECCCCcCCCC---CCCCCCC
Confidence 4444454554 5789888764 68999987321 1110 12346888876543 3568999
Q ss_pred CCCcc
Q psy4972 205 CAGRK 209 (349)
Q Consensus 205 C~g~g 209 (349)
|.+..
T Consensus 427 Cg~~~ 431 (679)
T PRK05580 427 CGSTD 431 (679)
T ss_pred CcCCe
Confidence 97763
No 163
>PRK14051 negative regulator GrlR; Provisional
Probab=38.74 E-value=1.5e+02 Score=23.52 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=45.7
Q ss_pred CccEEEEEEEccCCccccccceeEEEeecC--HHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCC
Q psy4972 245 PGDVIIVLEQKPHDRFQRQGINLVTTETIT--LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319 (349)
Q Consensus 245 ~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~--l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~ 319 (349)
.-|+++.++=..|+..+--+-+--+.+.|| +.+.-.+.+..-.--+.+.+.|.+- ++-=..+.|++-|||.
T Consensus 47 d~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~----akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 47 DEDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVY----AKFIEPLVIKNTGMPQ 119 (123)
T ss_pred cceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEe----eeeeeeeEEccCCCcc
Confidence 467888888787777666666666777887 4444444444433345566766543 2333457899999984
No 164
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=37.94 E-value=23 Score=22.81 Aligned_cols=12 Identities=33% Similarity=0.745 Sum_probs=5.4
Q ss_pred eEeccCCCCCCC
Q psy4972 140 SVICSTCNGKGS 151 (349)
Q Consensus 140 ~~~C~~C~G~G~ 151 (349)
..+||.|.|+..
T Consensus 3 h~pCP~CGG~Dr 14 (40)
T PF08273_consen 3 HGPCPICGGKDR 14 (40)
T ss_dssp EE--TTTT-TTT
T ss_pred CCCCCCCcCccc
Confidence 456777766653
No 165
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=37.80 E-value=16 Score=36.17 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=16.6
Q ss_pred EEecCccceEeeeeCCCCCCcceEE
Q psy4972 172 RIIGPNMTQQIQARCSDCQGEGEVM 196 (349)
Q Consensus 172 ~~~~~g~~~~~~~~C~~C~G~G~~~ 196 (349)
+...+.+......+||.|+|+|++.
T Consensus 379 kr~~~sL~e~~~~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 379 KRLRESLMEVLGTVCPHCSGTGIVK 403 (414)
T ss_pred cccCcChHHHhcCCCCCCcCeeEEc
Confidence 3444555555667788888888765
No 166
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=37.25 E-value=32 Score=28.97 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=5.5
Q ss_pred cccCCCCCc
Q psy4972 156 TFTCASCRG 164 (349)
Q Consensus 156 ~~~C~~C~G 164 (349)
...|..|+-
T Consensus 112 ~l~C~~Cg~ 120 (146)
T PF07295_consen 112 TLVCENCGH 120 (146)
T ss_pred eEecccCCC
Confidence 456777753
No 167
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=37.23 E-value=77 Score=21.79 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 24 AYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 24 ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
..|.-.+.-||+. ...+..+.+.+.|..|++.++....+.+
T Consensus 14 ~~r~~~~~~~p~~--~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 14 EQRPKLKKENPDA--SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHCcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455556678874 3557778899999999988877766654
No 168
>PRK14873 primosome assembly protein PriA; Provisional
Probab=35.91 E-value=38 Score=35.83 Aligned_cols=59 Identities=24% Similarity=0.475 Sum_probs=38.7
Q ss_pred cCCcceeeeee-----eEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCC
Q psy4972 129 NGKTTKLQLTK-----SVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCG 203 (349)
Q Consensus 129 ~G~~~~i~~~~-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~ 203 (349)
.| ..-+-++| ...|..|.- ...|+.|.+.=.... . ...-.|..|+-.- . ...|+
T Consensus 368 ~g-qvll~lnRrGyap~l~C~~Cg~-------~~~C~~C~~~L~~h~--~-------~~~l~Ch~CG~~~--~--p~~Cp 426 (665)
T PRK14873 368 HG-PVLVQVPRRGYVPSLACARCRT-------PARCRHCTGPLGLPS--A-------GGTPRCRWCGRAA--P--DWRCP 426 (665)
T ss_pred cC-cEEEEecCCCCCCeeEhhhCcC-------eeECCCCCCceeEec--C-------CCeeECCCCcCCC--c--CccCC
Confidence 35 66666665 378998876 478999997543211 0 1234699998642 2 67899
Q ss_pred cCCCc
Q psy4972 204 SCAGR 208 (349)
Q Consensus 204 ~C~g~ 208 (349)
.|.+.
T Consensus 427 ~Cgs~ 431 (665)
T PRK14873 427 RCGSD 431 (665)
T ss_pred CCcCC
Confidence 99876
No 169
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.83 E-value=36 Score=32.29 Aligned_cols=9 Identities=22% Similarity=0.999 Sum_probs=5.6
Q ss_pred EeccCCCCC
Q psy4972 141 VICSTCNGK 149 (349)
Q Consensus 141 ~~C~~C~G~ 149 (349)
..||.|.+.
T Consensus 185 ~~CPvCGs~ 193 (305)
T TIGR01562 185 TLCPACGSP 193 (305)
T ss_pred CcCCCCCCh
Confidence 357777655
No 170
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=35.71 E-value=72 Score=22.20 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+.++...+..||+.. ..+.-+.+.+.|.-|++.++....+.+
T Consensus 12 ~~~~~~~~k~~~p~~~--~~~i~~~~~~~W~~l~~~eK~~y~~~a 54 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS--NKEISKILAQMWKNLSEEEKAPYKEEA 54 (69)
T ss_dssp HHHHHHHHHHHSTTST--HHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc--cccchhhHHHHHhcCCHHHHHHHHHHH
Confidence 3455666667799877 556778899999999877766655543
No 171
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.58 E-value=31 Score=21.62 Aligned_cols=10 Identities=20% Similarity=0.783 Sum_probs=5.5
Q ss_pred EeccCCCCCC
Q psy4972 141 VICSTCNGKG 150 (349)
Q Consensus 141 ~~C~~C~G~G 150 (349)
+.||+|+..-
T Consensus 3 i~CP~C~~~f 12 (37)
T PF13719_consen 3 ITCPNCQTRF 12 (37)
T ss_pred EECCCCCceE
Confidence 4566665544
No 172
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.02 E-value=21 Score=37.96 Aligned_cols=38 Identities=21% Similarity=0.559 Sum_probs=26.4
Q ss_pred EeccCCCCCCCCCC--CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCc
Q psy4972 141 VICSTCNGKGSKSG--ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGE 192 (349)
Q Consensus 141 ~~C~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 192 (349)
..|++|...=.-.. ....|..|+-.. .+...|+.|++.
T Consensus 445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~--------------~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLTLHKATGQLRCHYCGYQE--------------PIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceEEecCCCeeEeCCCCCCC--------------CCCCCCCCCCCC
Confidence 56999987632221 367899998663 345689999998
No 173
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.73 E-value=1e+02 Score=24.69 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=7.0
Q ss_pred eeeEeccCCCCC
Q psy4972 138 TKSVICSTCNGK 149 (349)
Q Consensus 138 ~~~~~C~~C~G~ 149 (349)
+-...|..|+-.
T Consensus 69 p~~~~C~~Cg~~ 80 (117)
T PRK00564 69 KVELECKDCSHV 80 (117)
T ss_pred CCEEEhhhCCCc
Confidence 344667777643
No 174
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=34.50 E-value=23 Score=37.97 Aligned_cols=33 Identities=21% Similarity=0.623 Sum_probs=20.8
Q ss_pred eeeeee-EeccCCCCCCCCC-------CCcccCCCCCccce
Q psy4972 135 LQLTKS-VICSTCNGKGSKS-------GATFTCASCRGCGF 167 (349)
Q Consensus 135 i~~~~~-~~C~~C~G~G~~~-------~~~~~C~~C~G~G~ 167 (349)
++|+.. -.|+.|+|.|... .-..+|..|+|+-.
T Consensus 724 FSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 724 FSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred ccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 444433 5699999999653 11356666666654
No 175
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=34.46 E-value=16 Score=33.24 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=21.1
Q ss_pred eeeCCCCCCcceEEcCCCCCCcCCCccEEEeeE
Q psy4972 183 QARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKK 215 (349)
Q Consensus 183 ~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~ 215 (349)
+.+|-...|++.+ .|++|+|.|++....
T Consensus 27 ~~py~e~~g~~~v-----tCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 27 SFPYVEFTGRDSV-----TCPTCQGTGRIPREQ 54 (238)
T ss_pred cCccccccCCCCC-----cCCCCcCCccCCccc
Confidence 4466677777754 699999999987664
No 176
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=33.90 E-value=98 Score=22.44 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.++..++..||+.. ..+.-+.|.+.|..|++.++...++.
T Consensus 13 ~~~~r~~~~~~~p~~~--~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGLT--NNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4567778888899864 45667889999999998877665554
No 177
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=33.86 E-value=2.5e+02 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=35.3
Q ss_pred eEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEE
Q psy4972 267 LVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGI 312 (349)
Q Consensus 267 L~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l 312 (349)
....+.|++.++.. ....+.|-+|+.+-|.+|.+.++.+|+++..
T Consensus 21 ~~~~V~L~~ddr~K-rR~R~~td~G~evgl~LpRg~~L~dGDvL~~ 65 (206)
T PRK13263 21 RAPTLTLAFDARCK-SRLAATLDTGREVAVVLPRGTVLRDGDVLVA 65 (206)
T ss_pred eeeEEEECHHHhhc-ceEEEECCCCCEEEEECCCCCccCCCCEEEe
Confidence 45567888876655 4567778899999999998888899999865
No 178
>KOG3442|consensus
Probab=33.56 E-value=60 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=29.5
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc
Q psy4972 5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP 38 (349)
Q Consensus 5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~ 38 (349)
..-.||+|+...+.++|.+.|..|.....+.+..
T Consensus 60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 4457999999999999999999999988777764
No 179
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=32.71 E-value=40 Score=27.03 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=5.7
Q ss_pred eeEeccCCCC
Q psy4972 139 KSVICSTCNG 148 (349)
Q Consensus 139 ~~~~C~~C~G 148 (349)
-...|.+|+-
T Consensus 69 ~~~~C~~Cg~ 78 (115)
T TIGR00100 69 VECECEDCSE 78 (115)
T ss_pred cEEEcccCCC
Confidence 3455666663
No 180
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=32.52 E-value=37 Score=23.78 Aligned_cols=14 Identities=50% Similarity=0.824 Sum_probs=12.0
Q ss_pred EEeChhhhhcCCcc
Q psy4972 120 LKVSLEDLYNGKTT 133 (349)
Q Consensus 120 l~vsl~e~~~G~~~ 133 (349)
.+|+|+|+..|..+
T Consensus 31 FeIsLeDl~~GE~V 44 (67)
T COG5216 31 FEISLEDLRNGEVV 44 (67)
T ss_pred eEEEHHHhhCCceE
Confidence 68999999999765
No 181
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=32.32 E-value=1e+02 Score=21.71 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=28.7
Q ss_pred EEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEc
Q psy4972 268 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV 313 (349)
Q Consensus 268 ~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~ 313 (349)
.-.+.++..++.. ....+.|-+|+.+-|.+|.+..+++|+++...
T Consensus 16 ~~~v~L~~~~r~k-~r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d 60 (65)
T PF02814_consen 16 IDTVTLDWDERQK-RRLRLTTDDGREIGIDLPRGTVLRDGDVLYLD 60 (65)
T ss_dssp EEEEEE-GGGCTS-SEEEEE-TTS-EEEEE-SSTTT--TTEEEEEC
T ss_pred ceEEEECHHHhcc-eEEEEECCCCCEEEEECCCCcccCCCCEEEeC
Confidence 4455666666544 34677888999999999999889999998654
No 182
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.95 E-value=23 Score=28.30 Aligned_cols=28 Identities=21% Similarity=0.669 Sum_probs=20.7
Q ss_pred EeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972 181 QIQARCSDCQGEGEVMNEKDRCGSCAGR 208 (349)
Q Consensus 181 ~~~~~C~~C~G~G~~~~~~~~C~~C~g~ 208 (349)
..+..||.|+=.-+...+.+.|..|+-.
T Consensus 67 av~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 67 AVQVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred ceeeECCCCCChHhhhchhhccCcCCCc
Confidence 3556788888776666667899999754
No 183
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=31.55 E-value=3.7e+02 Score=23.78 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=14.9
Q ss_pred EEEEEecCC--CccCcEEEEcCC
Q psy4972 216 VLEVNVDKG--MKEMQKIYFRGE 236 (349)
Q Consensus 216 ~~~v~Ip~G--~~~G~~i~~~g~ 236 (349)
...|++|+| ++-|+.|.+.++
T Consensus 64 ~~~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 64 TKEVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred ceeEecCCCCeEecCCEEEEcCC
Confidence 456777777 677777777754
No 184
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.43 E-value=60 Score=25.94 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=6.3
Q ss_pred eCCCCCCcceE
Q psy4972 185 RCSDCQGEGEV 195 (349)
Q Consensus 185 ~C~~C~G~G~~ 195 (349)
.||.|++....
T Consensus 88 ~CP~Cgs~~~~ 98 (113)
T PRK12380 88 QCPHCHGERLR 98 (113)
T ss_pred cCcCCCCCCcE
Confidence 46666665433
No 185
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=30.63 E-value=56 Score=27.76 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=5.8
Q ss_pred cCCCCCccc
Q psy4972 158 TCASCRGCG 166 (349)
Q Consensus 158 ~C~~C~G~G 166 (349)
.||.|+..-
T Consensus 2 ~cp~c~~~~ 10 (154)
T PRK00464 2 RCPFCGHPD 10 (154)
T ss_pred cCCCCCCCC
Confidence 467776655
No 186
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.27 E-value=56 Score=20.79 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=4.3
Q ss_pred eeCCCCCC
Q psy4972 184 ARCSDCQG 191 (349)
Q Consensus 184 ~~C~~C~G 191 (349)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 34666555
No 187
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=30.07 E-value=36 Score=32.82 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=29.4
Q ss_pred CCCCCccceEEEEEEecCcc---ceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEE
Q psy4972 159 CASCRGCGFKIHHRIIGPNM---TQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLS 212 (349)
Q Consensus 159 C~~C~G~G~~~~~~~~~~g~---~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~ 212 (349)
+..--|....++.+..-+-+ ...+...|..|+|.| |..|++.+++.
T Consensus 233 l~~~fg~~~~~R~rpsyFPFTePS~Evdv~~~~~~g~g--------c~~ck~~~WiE 281 (339)
T PRK00488 233 LKAFFGEDVKIRFRPSYFPFTEPSAEVDVSCFKCGGKG--------CRVCKGTGWLE 281 (339)
T ss_pred HHHHcCCCCeEEecCCCCCCCCCceEEEEEEeccCCCc--------ccccCCCCceE
Confidence 45555555555543332222 235778899999988 99999888764
No 188
>PTZ00199 high mobility group protein; Provisional
Probab=29.41 E-value=1.1e+02 Score=23.31 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 25 YRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 25 yr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.|...+.-||+......+.-+.|.+.|..|++.++...++..
T Consensus 37 ~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A 78 (94)
T PTZ00199 37 KRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKA 78 (94)
T ss_pred HHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445556678887544456678899999999987776666553
No 189
>PRK02935 hypothetical protein; Provisional
Probab=29.34 E-value=31 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.621 Sum_probs=21.0
Q ss_pred EeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972 181 QIQARCSDCQGEGEVMNEKDRCGSCAGR 208 (349)
Q Consensus 181 ~~~~~C~~C~G~G~~~~~~~~C~~C~g~ 208 (349)
..+..||.|+=.-+..-+.+.|..|+-.
T Consensus 68 avqV~CP~C~K~TKmLGrvD~CM~C~~P 95 (110)
T PRK02935 68 AVQVICPSCEKPTKMLGRVDACMHCNQP 95 (110)
T ss_pred ceeeECCCCCchhhhccceeecCcCCCc
Confidence 4566788888776666678899999743
No 190
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=29.17 E-value=29 Score=27.70 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=11.9
Q ss_pred eeeEeccCCCCCCCCCCCcccCCCCCccc
Q psy4972 138 TKSVICSTCNGKGSKSGATFTCASCRGCG 166 (349)
Q Consensus 138 ~~~~~C~~C~G~G~~~~~~~~C~~C~G~G 166 (349)
+-...|..|+-..........||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp --EEEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred CCcEECCCCCCEEecCCCCCCCcCCcCCC
Confidence 34456777766543332223444444443
No 191
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.02 E-value=74 Score=25.47 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=7.4
Q ss_pred eeCCCCCCcceE
Q psy4972 184 ARCSDCQGEGEV 195 (349)
Q Consensus 184 ~~C~~C~G~G~~ 195 (349)
..||.|++....
T Consensus 87 ~~CP~Cgs~~~~ 98 (115)
T TIGR00100 87 YRCPKCHGIMLQ 98 (115)
T ss_pred ccCcCCcCCCcE
Confidence 457777776533
No 192
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=28.93 E-value=37 Score=27.08 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.1
Q ss_pred eeCCCCCCcce
Q psy4972 184 ARCSDCQGEGE 194 (349)
Q Consensus 184 ~~C~~C~G~G~ 194 (349)
..||.|++...
T Consensus 87 ~~CP~Cgs~~~ 97 (113)
T PF01155_consen 87 FSCPRCGSPDV 97 (113)
T ss_dssp HH-SSSSSS-E
T ss_pred CCCcCCcCCCc
Confidence 34666666553
No 193
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=27.64 E-value=58 Score=31.41 Aligned_cols=22 Identities=45% Similarity=1.147 Sum_probs=17.0
Q ss_pred eeEeccCCCCCCCCCCCcccCCCCCccceE
Q psy4972 139 KSVICSTCNGKGSKSGATFTCASCRGCGFK 168 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 168 (349)
-.+.|..|+|.| |+.|+++|..
T Consensus 259 vdv~~~~~~g~g--------c~~ck~~~Wi 280 (339)
T PRK00488 259 VDVSCFKCGGKG--------CRVCKGTGWL 280 (339)
T ss_pred EEEEEeccCCCc--------ccccCCCCce
Confidence 347788898876 7888888864
No 194
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.21 E-value=1.7e+02 Score=24.16 Aligned_cols=10 Identities=20% Similarity=0.753 Sum_probs=6.0
Q ss_pred eCCCCCCcce
Q psy4972 185 RCSDCQGEGE 194 (349)
Q Consensus 185 ~C~~C~G~G~ 194 (349)
.||.|++...
T Consensus 109 ~CP~Cgs~~~ 118 (135)
T PRK03824 109 KCPKCGSRDF 118 (135)
T ss_pred CCcCCCCCCc
Confidence 4666666543
No 195
>PRK11712 ribonuclease G; Provisional
Probab=27.19 E-value=28 Score=35.32 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=18.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy4972 10 LGVSKSASDQEIKKAYRKLAKEFHPDK 36 (349)
Q Consensus 10 Lgv~~~a~~~~Ik~ayr~l~~~~hPd~ 36 (349)
.|||+....++-++..+.++..+.|+.
T Consensus 139 vgiSrKI~de~~R~rLk~i~~~~~~~~ 165 (489)
T PRK11712 139 VGVSQRIESEEERERLKKIVAPYCDEQ 165 (489)
T ss_pred eeEecCCCChHHHHHHHHHHHhhCCCC
Confidence 567777666666777777777666553
No 196
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=27.15 E-value=57 Score=20.02 Aligned_cols=10 Identities=40% Similarity=1.189 Sum_probs=5.3
Q ss_pred cCCCCCccce
Q psy4972 158 TCASCRGCGF 167 (349)
Q Consensus 158 ~C~~C~G~G~ 167 (349)
.|+.|++.|.
T Consensus 5 ~C~~C~~~~i 14 (33)
T PF08792_consen 5 KCSKCGGNGI 14 (33)
T ss_pred EcCCCCCCeE
Confidence 4555555554
No 197
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=26.95 E-value=39 Score=27.11 Aligned_cols=19 Identities=42% Similarity=0.906 Sum_probs=10.8
Q ss_pred CCCCCCcceEEcCCCCCCcCC
Q psy4972 186 CSDCQGEGEVMNEKDRCGSCA 206 (349)
Q Consensus 186 C~~C~G~G~~~~~~~~C~~C~ 206 (349)
||.|++.=.+. +-.|+.|+
T Consensus 1 CPvCg~~l~vt--~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVT--RLKCPSCG 19 (113)
T ss_pred CCCCCCceEEE--EEEcCCCC
Confidence 55555554444 55677775
No 198
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=26.20 E-value=1.5e+02 Score=19.43 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhC
Q psy4972 20 EIKKAYRKLAKEFH 33 (349)
Q Consensus 20 ~Ik~ayr~l~~~~h 33 (349)
+.+.+|++|...+.
T Consensus 1 ~a~~~F~~lL~e~~ 14 (51)
T PF01846_consen 1 KAREAFKELLKEHK 14 (51)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCC
Confidence 46889999888765
No 199
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=26.07 E-value=1.2e+02 Score=27.48 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=31.3
Q ss_pred cccCCCCCCCHHH-HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Q psy4972 8 EVLGVSKSASDQE-IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLS 55 (349)
Q Consensus 8 ~iLgv~~~a~~~~-Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~ 55 (349)
+|-|=+.-.+.+. ++|+|++||+-.--..-.+..+....+-+-|++|.
T Consensus 84 ~ir~e~~ll~~~~l~~ksykqla~d~gmqi~~~~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 84 RIRGESTLLDPETLPKKSYKQLARDMGMQIVNEPSEHMLGLLELYEYLK 132 (268)
T ss_pred eecccccccChhhcchHHHHHHHHHhCceecCCchHHHHHHHHHHHhcC
Confidence 3333333334443 89999999996554444455677777888888885
No 200
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.04 E-value=31 Score=19.76 Aligned_cols=20 Identities=25% Similarity=0.785 Sum_probs=10.5
Q ss_pred eCCCCCCcceEEcCCCCCCcCC
Q psy4972 185 RCSDCQGEGEVMNEKDRCGSCA 206 (349)
Q Consensus 185 ~C~~C~G~G~~~~~~~~C~~C~ 206 (349)
.|+.|+- .+......|+.|.
T Consensus 4 ~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 4 FCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCcccCC--cCCcccccChhhC
Confidence 4555554 2233356677764
No 201
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=25.27 E-value=1.2e+02 Score=21.78 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=5.0
Q ss_pred eeeCCCCCC
Q psy4972 183 QARCSDCQG 191 (349)
Q Consensus 183 ~~~C~~C~G 191 (349)
...|+.|+=
T Consensus 36 ~v~C~~CGY 44 (64)
T PF09855_consen 36 TVSCTNCGY 44 (64)
T ss_pred EEECCCCCC
Confidence 445666654
No 202
>PTZ00087 thrombosponding-related protein; Provisional
Probab=25.16 E-value=96 Score=28.79 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=10.6
Q ss_pred CcccCC-CCCc-cceEEE
Q psy4972 155 ATFTCA-SCRG-CGFKIH 170 (349)
Q Consensus 155 ~~~~C~-~C~G-~G~~~~ 170 (349)
.+..|+ .|+| .|.+.+
T Consensus 238 eWS~CSkTCGgggGVQtR 255 (340)
T PTZ00087 238 EWSNCSMECDHPDNVQIR 255 (340)
T ss_pred CCCCcCcccCCCCCeEeE
Confidence 367788 5886 577544
No 203
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.47 E-value=2.1e+02 Score=24.40 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=55.0
Q ss_pred eeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCC
Q psy4972 266 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339 (349)
Q Consensus 266 dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~ 339 (349)
++...+.++..++..+....+.-.......+.+|.+ ...+..+++.+++.... ...++++.++.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 218 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLLGKALKSTIKAG--ALEGKALRLKGLLKSAR---GALGKARLKELSKRHP 218 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccccccccccCCcc--cccCceeeecccCCcCC---CCcccceeeeeccCCC
Confidence 678888999999999988888776665444677777 68899999999998755 3578999998887544
No 204
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.42 E-value=55 Score=22.96 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=5.7
Q ss_pred eeeCCCCCCcc
Q psy4972 183 QARCSDCQGEG 193 (349)
Q Consensus 183 ~~~C~~C~G~G 193 (349)
..+|+.|+|.-
T Consensus 17 ke~Cp~CG~~t 27 (59)
T COG2260 17 KEKCPVCGGDT 27 (59)
T ss_pred cccCCCCCCcc
Confidence 34555555543
No 205
>PRK11032 hypothetical protein; Provisional
Probab=23.86 E-value=73 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhC
Q psy4972 20 EIKKAYRKLAKEFH 33 (349)
Q Consensus 20 ~Ik~ayr~l~~~~h 33 (349)
..+++|.++.....
T Consensus 3 k~~~~Y~~ll~~v~ 16 (160)
T PRK11032 3 KVAQYYRELVASLT 16 (160)
T ss_pred hHHHHHHHHHHHHH
Confidence 46778888875443
No 206
>PRK05580 primosome assembly protein PriA; Validated
Probab=23.22 E-value=54 Score=34.74 Aligned_cols=39 Identities=18% Similarity=0.482 Sum_probs=23.7
Q ss_pred eEeccCCCCCCCC--CCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCc
Q psy4972 140 SVICSTCNGKGSK--SGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGE 192 (349)
Q Consensus 140 ~~~C~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 192 (349)
...|++|.+.=.. ......|..|+.+- .....|+.|++.
T Consensus 390 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 390 VAECPHCDASLTLHRFQRRLRCHHCGYQE--------------PIPKACPECGST 430 (679)
T ss_pred ccCCCCCCCceeEECCCCeEECCCCcCCC--------------CCCCCCCCCcCC
Confidence 4568888874221 12345688887543 244578888776
No 207
>smart00398 HMG high mobility group.
Probab=22.77 E-value=1.9e+02 Score=19.85 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 23 KAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 23 ~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
..++...+.-||+.. ..+..+.+.+.|..|++.++....+.+
T Consensus 14 ~~~r~~~~~~~~~~~--~~~i~~~~~~~W~~l~~~ek~~y~~~a 55 (70)
T smart00398 14 QENRAKIKAENPDLS--NAEISKKLGERWKLLSEEEKAPYEEKA 55 (70)
T ss_pred HHHHHHHHHHCcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555556688764 445667899999999988777666654
No 208
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=22.66 E-value=98 Score=26.35 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=31.7
Q ss_pred EEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCC---CCCcEEEEEEEEc
Q psy4972 284 KVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPY---EKGTLYIKFDVQF 337 (349)
Q Consensus 284 ~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~---~~Gdl~v~~~v~~ 337 (349)
+-+.+-+|-.|.|.| | + +.+.|.|+|+...-..+ ..||++++|.+.+
T Consensus 63 igi~t~~GvEiLiHi--G--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 63 IGIETDEGVEILIHI--G--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred EEEEcCCCcEEEEEe--c--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHHH
Confidence 556666777666654 3 1 35678898886543332 4699999998775
No 209
>PRK13261 ureE urease accessory protein UreE; Provisional
Probab=22.47 E-value=2.6e+02 Score=23.66 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.1
Q ss_pred EEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEc
Q psy4972 269 TTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV 313 (349)
Q Consensus 269 ~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~ 313 (349)
-.+.|+..++-.. ...+.|-+|+.+-|.+|.+..+.+|+++...
T Consensus 22 ~~v~L~~~~r~k~-r~r~~t~~G~e~~i~L~r~~~L~dGDvL~~d 65 (159)
T PRK13261 22 ETVTLEADERVKR-RLRVTTDHGEEIGLRLPRGTVLRDGDVLFLD 65 (159)
T ss_pred eEEEECHHHhhce-eEEEECCCCCEEEEECCCCCccCCCCEEEeC
Confidence 3467777666553 4677788999999999998889999998764
No 210
>PRK14873 primosome assembly protein PriA; Provisional
Probab=22.46 E-value=55 Score=34.64 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=24.7
Q ss_pred eEeccCCCCCCCCC--CCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcc
Q psy4972 140 SVICSTCNGKGSKS--GATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEG 193 (349)
Q Consensus 140 ~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 193 (349)
...|++|++.=... .....|..|+-. .....|+.|++.-
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~~---------------~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGRA---------------APDWRCPRCGSDR 432 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcCC---------------CcCccCCCCcCCc
Confidence 46799998754332 225678888642 1245799998863
No 211
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=22.39 E-value=1.1e+02 Score=24.70 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=26.8
Q ss_pred EEEecCCCccCcEEEEcCCCCCCCC-------CCCccEEEEEEEccC
Q psy4972 218 EVNVDKGMKEMQKIYFRGEGDQQPD-------QEPGDVIIVLEQKPH 257 (349)
Q Consensus 218 ~v~Ip~G~~~G~~i~~~g~G~~~~~-------~~~GDl~v~i~v~~~ 257 (349)
+..||.|+.+|++|.+.|.=...++ ...+|+.+.+++...
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~ 48 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFN 48 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCC
Confidence 4578999999999999986654321 122566666665543
No 212
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=22.37 E-value=1.6e+02 Score=18.68 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=9.1
Q ss_pred cCCCCCccceEEEEEE
Q psy4972 158 TCASCRGCGFKIHHRI 173 (349)
Q Consensus 158 ~C~~C~G~G~~~~~~~ 173 (349)
.|+.|+....+....|
T Consensus 2 ~Cp~C~~~~a~~~q~Q 17 (40)
T smart00440 2 PCPKCGNREATFFQLQ 17 (40)
T ss_pred cCCCCCCCeEEEEEEc
Confidence 4777766665544433
No 213
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=22.35 E-value=67 Score=24.91 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=16.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q psy4972 9 VLGVSKSASDQEIKKAYRKLA 29 (349)
Q Consensus 9 iLgv~~~a~~~~Ik~ayr~l~ 29 (349)
++-|+++|+..|||+|..+|-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466888999999998887764
No 214
>KOG0724|consensus
Probab=22.12 E-value=31 Score=32.90 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 11 GVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 11 gv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+.-.+....|++||..+.. .||++++...++|.+.-.-|..+.+...+..|+.+
T Consensus 32 ~~~~~~~~k~i~ka~~i~~~-~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (335)
T KOG0724|consen 32 SLWTEEEFKKIEKALAILDD-DEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVF 86 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhc-cccccchhhhhHHHhcCccccccchhHHhhhhhHH
Confidence 33444556789999999998 99999987666666655545667766666666654
No 215
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=21.73 E-value=2.9e+02 Score=25.50 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=54.3
Q ss_pred CCccEEEEEEEccCCccccccceeEEEeecCHHHHhC-------CcEEEEecCCCcEEE----EEcCCCCCcCCCcEEEE
Q psy4972 244 EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALC-------GFTKVIKHLDDRQLL----ITHPPGEVIKPEDIKGI 312 (349)
Q Consensus 244 ~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~-------G~~~~i~~l~g~~i~----v~ip~~~v~~~g~~~~l 312 (349)
.+||++|.-++.||---+.-.-==++.-+|++.++.. .....|.|-.|..|. +.|-|- ++.|+++|+
T Consensus 79 L~GDVii~ThIcp~Apt~PH~PvpFM~sPv~~~~~n~~EV~p~mdAILSiDTTKGNRiin~~GfAisPt--vKeGyILrv 156 (276)
T PF06675_consen 79 LPGDVIITTHICPDAPTRPHDPVPFMGSPVDMATMNRHEVDPEMDAILSIDTTKGNRIINHRGFAISPT--VKEGYILRV 156 (276)
T ss_pred cCCcEEEEEecCCCCCCCCCCCcccccCccCHHHHHHhhcCcccceEEEEecCCCceeeccCCeEeccc--ccceEEEEc
Confidence 4799999999988765443333334555666665543 345677776664331 223344 789999998
Q ss_pred cCCCcCCCCCCCCCCcEEEEEEEEc
Q psy4972 313 VGEGMPIYKNPYEKGTLYIKFDVQF 337 (349)
Q Consensus 313 ~g~G~p~~~~~~~~Gdl~v~~~v~~ 337 (349)
.-.=+..+.. ..|.+-+.|-|.+
T Consensus 157 sedLl~im~~--~TG~~~~~~PlT~ 179 (276)
T PF06675_consen 157 SEDLLDIMER--VTGKLPVTFPLTT 179 (276)
T ss_pred CHHHHHHHHh--hcCCCceEEeccc
Confidence 7554443332 3466666665544
No 216
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=21.67 E-value=49 Score=20.94 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=7.8
Q ss_pred ccCCCCCccce
Q psy4972 157 FTCASCRGCGF 167 (349)
Q Consensus 157 ~~C~~C~G~G~ 167 (349)
.+|+.|.|+..
T Consensus 4 ~pCP~CGG~Dr 14 (37)
T smart00778 4 GPCPNCGGSDR 14 (37)
T ss_pred cCCCCCCCccc
Confidence 56788877764
No 217
>PRK10053 hypothetical protein; Provisional
Probab=21.67 E-value=1.1e+02 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=16.4
Q ss_pred EEEEcC----CCCCcCCCcEEEEcCC
Q psy4972 294 LLITHP----PGEVIKPEDIKGIVGE 315 (349)
Q Consensus 294 i~v~ip----~~~v~~~g~~~~l~g~ 315 (349)
|.|+|+ .|..+.|.+.+||.|+
T Consensus 88 I~VeID~~~w~G~~v~p~~kV~I~Ge 113 (130)
T PRK10053 88 INVIIPAAVFDGREVQPDQMININGS 113 (130)
T ss_pred EEEEeCHHHcCCCcCCCCCEEEEEEE
Confidence 555554 3556889999999998
No 218
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.37 E-value=76 Score=19.74 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=5.5
Q ss_pred EeccCCCCCC
Q psy4972 141 VICSTCNGKG 150 (349)
Q Consensus 141 ~~C~~C~G~G 150 (349)
+.|+.|+-.=
T Consensus 3 i~Cp~C~~~y 12 (36)
T PF13717_consen 3 ITCPNCQAKY 12 (36)
T ss_pred EECCCCCCEE
Confidence 4566665543
No 219
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.92 E-value=58 Score=33.22 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=23.3
Q ss_pred eEeccCCCCCCCCC--CCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcc
Q psy4972 140 SVICSTCNGKGSKS--GATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEG 193 (349)
Q Consensus 140 ~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 193 (349)
...|++|.+.=.-. .....|..|+-+= .....||.|++.-
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQE--------------PIPKTCPQCGSED 263 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcC--------------CCCCCCCCCCCCe
Confidence 45688887643211 2245687776432 3455788887753
No 220
>KOG0527|consensus
Probab=20.90 E-value=1.3e+02 Score=29.03 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 21 IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 21 Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
..+..||...+-.||.+ ..|.-|.|-+-|..|++.+||-.+|.
T Consensus 73 WSq~~RRkma~qnP~mH--NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 73 WSQGQRRKLAKQNPKMH--NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred hhHHHHHHHHHhCcchh--hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 44566666666778775 23677889999999999999998884
No 221
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=20.77 E-value=3.1e+02 Score=22.54 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=34.4
Q ss_pred EEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEc
Q psy4972 268 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV 313 (349)
Q Consensus 268 ~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~ 313 (349)
.-.+.+++.++... .....|-+|+.+-|.+|.+..+.+|+++...
T Consensus 20 ~d~v~L~~~~r~k~-r~r~~t~~G~ei~i~L~r~~~L~dGdvL~~d 64 (136)
T cd00571 20 IDTVVLTWDDRQKR-RLRLKSDHGEELGIRLPRGQVLRDGDVLFLD 64 (136)
T ss_pred eeEEEEcHHHhhce-EEEEECCCCCEEEEECCCCCcCCCCCEEEeC
Confidence 45567777666553 4667788999999999988888999998764
No 222
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=20.70 E-value=1.2e+02 Score=20.75 Aligned_cols=8 Identities=38% Similarity=1.215 Sum_probs=4.1
Q ss_pred eeCCCCCC
Q psy4972 184 ARCSDCQG 191 (349)
Q Consensus 184 ~~C~~C~G 191 (349)
+.|..|+.
T Consensus 30 V~C~~Cga 37 (61)
T PF14354_consen 30 VECTDCGA 37 (61)
T ss_pred EEcCCCCC
Confidence 34555544
No 223
>PRK14113 urease accessory protein UreE; Provisional
Probab=20.24 E-value=3e+02 Score=23.24 Aligned_cols=43 Identities=7% Similarity=-0.104 Sum_probs=32.0
Q ss_pred EEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEE
Q psy4972 269 TTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGI 312 (349)
Q Consensus 269 ~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l 312 (349)
..+.+++.+... ....+.|-+|+.+-|.+|.+..+.+|+++..
T Consensus 17 ~~v~L~~~~r~r-~R~R~~t~~G~e~~l~L~r~~~L~dGD~L~~ 59 (152)
T PRK14113 17 DSITLDHDTRKK-GRIKSVTDNGEEIGVFLERGHPLLVGEILKT 59 (152)
T ss_pred cEEEECHHHhhh-ceEEEEcCCCcEEEEECCCCcccCCCCEEEc
Confidence 346677755443 4567778899999999998888888888854
No 224
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.20 E-value=3.7e+02 Score=19.94 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=26.3
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc
Q psy4972 6 LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP 38 (349)
Q Consensus 6 ~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~ 38 (349)
--.+.++.+-|+.+||..|-.+..+|..=-..|
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 344567889999999999999999998654444
Done!