Query psy4972
Match_columns 349
No_of_seqs 268 out of 2154
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:33:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlt_A Protein YDJ1, mitochond 100.0 2.3E-63 8E-68 454.3 26.0 239 109-349 7-245 (248)
2 3lz8_A Putative chaperone DNAJ 100.0 2.7E-64 9.4E-69 476.9 18.8 272 1-348 25-307 (329)
3 3agx_A DNAJ homolog subfamily 100.0 6.1E-45 2.1E-49 317.4 19.8 171 113-348 2-172 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 3.9E-43 1.3E-47 305.8 20.4 170 112-348 2-172 (180)
5 1c3g_A Heat shock protein 40; 100.0 3.9E-41 1.3E-45 290.6 18.5 166 114-349 1-167 (170)
6 1xao_A YDJ1, mitochondrial pro 99.9 1.5E-24 5.1E-29 176.3 9.2 89 259-348 1-89 (121)
7 3i38_A Putative chaperone DNAJ 99.9 4.4E-24 1.5E-28 170.2 8.3 86 255-348 2-87 (109)
8 2och_A Hypothetical protein DN 99.9 2.6E-22 8.8E-27 148.7 6.6 68 2-69 6-73 (73)
9 2o37_A Protein SIS1; HSP40, J- 99.9 2.2E-22 7.4E-27 155.9 6.4 72 2-73 6-77 (92)
10 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.2E-22 4.2E-27 160.6 4.8 91 3-93 2-99 (103)
11 1hdj_A Human HSP40, HDJ-1; mol 99.9 6.4E-22 2.2E-26 148.1 7.5 70 4-73 3-74 (77)
12 2ctr_A DNAJ homolog subfamily 99.8 1.4E-21 4.8E-26 150.0 6.9 73 2-74 5-79 (88)
13 2dn9_A DNAJ homolog subfamily 99.8 2.7E-21 9.1E-26 145.5 7.1 69 2-70 5-76 (79)
14 2ej7_A HCG3 gene; HCG3 protein 99.8 2.1E-21 7.1E-26 147.1 6.2 70 2-71 7-80 (82)
15 2ctt_A DNAJ homolog subfamily 99.8 1.2E-21 3.9E-26 155.2 4.9 102 113-221 1-103 (104)
16 2lgw_A DNAJ homolog subfamily 99.8 1.9E-21 6.7E-26 152.3 6.2 71 3-73 1-75 (99)
17 2ctp_A DNAJ homolog subfamily 99.8 2.3E-21 8E-26 145.4 6.1 69 2-70 5-75 (78)
18 2dmx_A DNAJ homolog subfamily 99.8 3.1E-21 1.1E-25 149.4 6.5 72 2-73 7-82 (92)
19 2cug_A Mkiaa0962 protein; DNAJ 99.8 7.1E-21 2.4E-25 146.1 6.8 69 2-70 15-85 (88)
20 2yua_A Williams-beuren syndrom 99.8 9.5E-21 3.2E-25 148.6 7.1 67 1-67 14-83 (99)
21 2ctq_A DNAJ homolog subfamily 99.8 7.4E-21 2.5E-25 152.6 6.1 70 2-71 18-90 (112)
22 2ctw_A DNAJ homolog subfamily 99.8 1.8E-20 6.3E-25 149.5 6.1 71 2-72 15-88 (109)
23 1wjz_A 1700030A21RIK protein; 99.8 2E-20 6.9E-25 145.4 3.7 68 1-68 13-89 (94)
24 3apq_A DNAJ homolog subfamily 99.8 3.2E-19 1.1E-23 158.2 7.6 71 4-74 2-75 (210)
25 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.8E-19 6.2E-24 143.8 4.8 68 2-69 13-87 (109)
26 2ys8_A RAB-related GTP-binding 99.7 1.2E-18 4.2E-23 134.1 4.9 61 2-62 25-87 (90)
27 2l6l_A DNAJ homolog subfamily 99.7 1.7E-18 5.8E-23 146.8 5.5 68 1-68 7-83 (155)
28 1gh6_A Large T antigen; tumor 99.7 2.5E-19 8.5E-24 143.5 0.2 65 3-68 7-73 (114)
29 1faf_A Large T antigen; J doma 99.7 2.5E-18 8.5E-23 128.9 4.3 65 4-70 11-77 (79)
30 2pf4_E Small T antigen; PP2A, 99.7 5.4E-19 1.8E-23 151.0 0.7 64 4-68 11-76 (174)
31 1iur_A KIAA0730 protein; DNAJ 99.7 3.3E-18 1.1E-22 130.7 2.4 61 2-62 14-78 (88)
32 1fpo_A HSC20, chaperone protei 99.6 7.4E-17 2.5E-21 138.6 4.7 63 5-67 2-74 (171)
33 3hho_A CO-chaperone protein HS 99.6 1.1E-16 3.9E-21 137.9 5.6 66 2-67 2-77 (174)
34 2guz_A Mitochondrial import in 99.6 5.5E-17 1.9E-21 119.1 3.0 59 1-60 11-70 (71)
35 1n4c_A Auxilin; four helix bun 99.6 8.5E-17 2.9E-21 138.3 3.7 60 4-63 117-182 (182)
36 3bvo_A CO-chaperone protein HS 99.6 1.7E-16 5.8E-21 140.2 5.7 63 3-65 42-114 (207)
37 2qwo_B Putative tyrosine-prote 99.6 7.4E-17 2.5E-21 123.6 2.7 53 4-56 33-91 (92)
38 3uo3_A J-type CO-chaperone JAC 99.6 1.5E-16 5.1E-21 137.7 3.7 65 3-67 10-81 (181)
39 3ag7_A Putative uncharacterize 99.6 1.5E-16 5E-21 125.8 3.0 55 3-58 40-104 (106)
40 3apo_A DNAJ homolog subfamily 99.6 6.7E-17 2.3E-21 169.7 -0.1 73 2-74 19-94 (780)
41 1exk_A DNAJ protein; extended 99.5 5.5E-14 1.9E-18 105.2 7.6 77 130-213 1-78 (79)
42 1nlt_A Protein YDJ1, mitochond 99.3 3.2E-12 1.1E-16 116.1 7.9 52 216-267 190-246 (248)
43 3i38_A Putative chaperone DNAJ 99.0 2E-10 6.7E-15 91.1 5.1 53 216-269 39-91 (109)
44 2guz_B Mitochondrial import in 98.9 3.7E-10 1.3E-14 80.6 3.4 56 1-57 1-59 (65)
45 2y4t_A DNAJ homolog subfamily 98.9 5.2E-10 1.8E-14 107.5 5.5 63 3-65 381-449 (450)
46 1xao_A YDJ1, mitochondrial pro 98.9 1.4E-09 4.9E-14 87.7 5.0 54 216-269 35-93 (121)
47 1c3g_A Heat shock protein 40; 98.7 3.6E-08 1.2E-12 84.3 7.9 68 266-336 2-77 (170)
48 2q2g_A HSP40 protein, heat sho 98.7 3.9E-08 1.3E-12 84.8 7.9 69 264-336 3-83 (180)
49 3agx_A DNAJ homolog subfamily 98.6 8.3E-08 2.8E-12 82.8 8.2 69 264-336 2-83 (181)
50 3lz8_A Putative chaperone DNAJ 98.6 7.5E-08 2.6E-12 90.7 6.8 72 262-336 138-222 (329)
51 3lcz_A YCZA, inhibitor of trap 97.8 7E-06 2.4E-10 55.8 1.3 32 181-214 7-38 (53)
52 1exk_A DNAJ protein; extended 97.6 1.7E-05 5.7E-10 58.6 2.1 45 139-196 27-77 (79)
53 2ctt_A DNAJ homolog subfamily 97.6 2.5E-05 8.6E-10 60.9 3.2 44 140-196 45-94 (104)
54 3pmq_A Decaheme cytochrome C M 97.5 8E-07 2.7E-11 90.3 -9.1 78 117-194 168-257 (669)
55 2bx9_A Anti-trap, AT, tryptoph 97.0 0.00029 9.9E-09 47.7 2.5 11 157-167 10-20 (53)
56 2bx9_A Anti-trap, AT, tryptoph 97.0 0.00035 1.2E-08 47.3 2.5 26 141-168 10-35 (53)
57 3lcz_A YCZA, inhibitor of trap 97.0 0.00037 1.3E-08 47.2 2.5 13 184-196 24-36 (53)
58 1uzc_A Hypothetical protein FL 62.2 14 0.00047 26.0 4.9 53 15-67 11-66 (71)
59 2b7e_A PRE-mRNA processing pro 61.4 11 0.00039 25.5 4.1 50 18-67 2-56 (59)
60 1ltl_A DNA replication initiat 54.0 25 0.00087 31.4 6.6 18 15-32 8-25 (279)
61 1ckt_A High mobility group 1 p 49.8 29 0.001 23.6 5.0 43 23-65 14-56 (71)
62 2d7l_A WD repeat and HMG-box D 49.0 22 0.00077 25.4 4.4 44 22-66 17-60 (81)
63 2qkd_A Zinc finger protein ZPR 48.8 20 0.00067 34.1 5.0 79 156-235 12-112 (404)
64 2qkd_A Zinc finger protein ZPR 48.0 21 0.00071 33.9 5.1 20 216-235 301-320 (404)
65 2eqz_A High mobility group pro 48.0 28 0.00097 24.9 4.8 44 22-65 27-70 (86)
66 3jt0_A Lamin-B1; structural ge 44.4 61 0.0021 26.0 6.7 39 278-317 51-89 (144)
67 4a3n_A Transcription factor SO 42.0 37 0.0013 23.0 4.5 42 22-65 14-55 (71)
68 2lll_A Lamin-B2; immunoglobuli 42.0 74 0.0025 25.3 6.8 40 278-318 47-87 (139)
69 2cqn_A Formin-binding protein 39.5 32 0.0011 24.5 3.8 52 16-68 6-63 (77)
70 2vl6_A SSO MCM N-TER, minichro 37.6 1.3E+02 0.0046 26.3 8.6 14 20-33 9-22 (268)
71 2dod_A Transcription elongatio 36.6 53 0.0018 23.6 4.7 54 15-68 13-68 (82)
72 3pmq_A Decaheme cytochrome C M 36.3 5.1 0.00017 40.7 -1.2 47 156-209 191-256 (669)
73 3f27_D Transcription factor SO 35.1 60 0.002 22.8 4.8 42 22-65 18-59 (83)
74 1i11_A Transcription factor SO 33.2 60 0.0021 22.7 4.6 42 22-65 16-57 (81)
75 2crj_A SWI/SNF-related matrix- 32.8 76 0.0026 22.8 5.2 43 22-66 19-61 (92)
76 3hn9_A Lamin-B1; structural ge 31.1 1.4E+02 0.0048 23.0 6.7 39 278-317 38-76 (123)
77 3nyb_B Protein AIR2; polya RNA 31.1 28 0.00095 25.2 2.4 53 139-196 4-59 (83)
78 2kdx_A HYPA, hydrogenase/ureas 30.8 36 0.0012 26.1 3.2 39 128-166 60-100 (119)
79 2cs1_A PMS1 protein homolog 1; 30.0 73 0.0025 22.9 4.7 43 22-66 19-61 (92)
80 2rq5_A Protein jumonji; develo 29.3 35 0.0012 26.6 2.8 44 23-66 64-112 (121)
81 1hme_A High mobility group pro 28.6 1E+02 0.0035 21.1 5.1 42 22-65 18-59 (77)
82 1ifr_A Lamin A/C; immunoglobul 27.9 1.8E+02 0.0061 22.4 6.7 40 278-318 32-72 (121)
83 1ufg_A Lamin A, nuclear lamin; 27.2 1.9E+02 0.0066 23.2 7.1 40 278-318 63-103 (151)
84 2ks0_A Uncharacterized protein 26.4 1.6E+02 0.0054 20.5 5.5 48 282-336 11-58 (71)
85 2yrq_A High mobility group pro 26.2 88 0.003 25.4 5.0 44 22-65 27-70 (173)
86 1wgf_A Upstream binding factor 25.8 85 0.0029 22.5 4.3 43 22-66 32-74 (90)
87 3a43_A HYPD, hydrogenase nicke 25.6 40 0.0014 26.8 2.7 12 139-150 69-80 (139)
88 1gmu_A UREE; metallochaperone; 25.4 1.7E+02 0.0057 23.2 6.3 44 268-312 15-58 (143)
89 2vf7_A UVRA2, excinuclease ABC 25.0 28 0.00096 36.4 2.0 33 158-194 640-672 (842)
90 2bx2_L Ribonuclease E, RNAse E 24.7 17 0.00059 35.7 0.3 25 172-196 397-421 (517)
91 1aab_A High mobility group pro 24.6 33 0.0011 24.2 1.8 45 22-66 19-63 (83)
92 2co9_A Thymus high mobility gr 24.3 91 0.0031 23.0 4.4 43 22-66 29-71 (102)
93 1qo8_A Flavocytochrome C3 fuma 23.2 7.3 0.00025 38.5 -2.8 66 142-209 14-86 (566)
94 1ny9_A Transcriptional activat 23.2 1.3E+02 0.0044 23.5 5.3 44 20-68 81-124 (143)
95 3nm9_A HMG-D, high mobility gr 23.2 1.3E+02 0.0044 20.4 4.7 38 22-64 15-52 (73)
96 1ear_A Urease accessory protei 22.4 2.1E+02 0.0072 22.7 6.4 45 268-313 20-64 (147)
97 2lef_A LEF-1 HMG, protein (lym 22.4 1.1E+02 0.0039 21.5 4.4 42 22-65 14-55 (86)
98 1hry_A Human SRY; DNA, DNA-bin 22.3 1E+02 0.0034 21.1 4.0 42 22-65 16-57 (76)
99 3u2b_C Transcription factor SO 22.3 1.2E+02 0.0041 20.8 4.5 42 22-65 14-55 (79)
100 1wz6_A HMG-box transcription f 22.1 1.1E+02 0.0037 21.3 4.2 42 22-65 19-60 (82)
101 2a20_A Regulating synaptic mem 21.6 56 0.0019 22.0 2.3 24 140-163 9-32 (62)
102 3tmm_A Transcription factor A, 21.5 1E+02 0.0035 26.7 4.7 43 22-66 53-95 (238)
103 4euw_A Transcription factor SO 21.4 1.3E+02 0.0043 22.4 4.6 43 21-65 40-82 (106)
104 1gt0_D Transcription factor SO 21.1 1.1E+02 0.0036 21.2 4.0 43 22-66 14-56 (80)
105 3tq6_A Transcription factor A, 21.0 1.1E+02 0.0038 25.9 4.8 43 22-66 21-63 (214)
106 1j46_A SRY, sex-determining re 20.7 1.3E+02 0.0043 21.2 4.4 42 22-65 16-57 (85)
107 2e6o_A HMG box-containing prot 20.0 1.3E+02 0.0045 21.3 4.3 42 22-65 29-70 (87)
No 1
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=2.3e-63 Score=454.29 Aligned_cols=239 Identities=44% Similarity=0.816 Sum_probs=219.5
Q ss_pred CCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCC
Q psy4972 109 RPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSD 188 (349)
Q Consensus 109 ~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~ 188 (349)
+++++.|+.+.|.|||+|||+|+++++.+.+.+.|++|+|+|+.+++..+|+.|+|+|++...+++++ |+++.+.+|+.
T Consensus 7 ~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp -CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 34678999999999999999999999999999999999999999887899999999999998899998 88889999999
Q ss_pred CCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeE
Q psy4972 189 CQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLV 268 (349)
Q Consensus 189 C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~ 268 (349)
|+|+|+++...++|+.|+|.+++.+.+.++|+||||+++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||+
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~ 165 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLV 165 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEE
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEE
Confidence 99999999889999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 269 TTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 269 ~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
++++|+|+|||+|++++|+||||+.+.|+||+|+++++|++++|+|+|||..+++ .+|||||+|+|+||++.|||++|+
T Consensus 166 ~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q~ 244 (248)
T 1nlt_A 166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEENL 244 (248)
T ss_dssp EEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC---------
T ss_pred EEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHHH
Confidence 9999999999999999999999988999999999999999999999999987665 689999999999999989999986
Q ss_pred C
Q psy4972 349 K 349 (349)
Q Consensus 349 ~ 349 (349)
+
T Consensus 245 ~ 245 (248)
T 1nlt_A 245 K 245 (248)
T ss_dssp -
T ss_pred H
Confidence 4
No 2
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2.7e-64 Score=476.94 Aligned_cols=272 Identities=28% Similarity=0.433 Sum_probs=150.6
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc----
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK---- 74 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~---- 74 (349)
|+.+|||++|||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+|+..+...+
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~ 104 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQ 104 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccc
Confidence 56689999999999999999999999999999999985 468999999999999999999999999954321111
Q ss_pred cC--CCCC--CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972 75 AG--GGGA--DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG 150 (349)
Q Consensus 75 ~~--~~g~--~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G 150 (349)
.. +++| .++.|+|++|||++. . + ++.+++.++.|+.+.|.|||+|+|.|+++++.+.+.+.| +
T Consensus 105 ~~~~~~~f~~~~f~diF~~~Fg~~g----~--~-~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g-- 171 (329)
T 3lz8_A 105 RQTHEQSYSQQDFDDIFSSMFGQQA----H--Q-RRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V-- 171 (329)
T ss_dssp ---------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S--
T ss_pred cccccCCcCCCchhhhhHhhhcCcC----C--C-CCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C--
Confidence 00 1122 235688888886421 1 0 112235679999999999999999999999999876632 1
Q ss_pred CCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972 151 SKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230 (349)
Q Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~ 230 (349)
.|. ..+...+.++|+||||+++|++
T Consensus 172 --------------~G~-----------------------------------------v~~~~~~~l~V~IP~Gv~~G~~ 196 (329)
T 3lz8_A 172 --------------FGM-----------------------------------------IESETPKTLNVKIPAGVVDGQR 196 (329)
T ss_dssp --------------CC------------------------------------------CCEEEEEEEEEEECTTCCTTCE
T ss_pred --------------CeE-----------------------------------------EEEecceEEEEeCCCCCCCCCE
Confidence 111 1123356899999999999999
Q ss_pred EEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcE
Q psy4972 231 IYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI 309 (349)
Q Consensus 231 i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~ 309 (349)
|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||+++++|++++|++|++++|+||||+ +.|+||++ +++|++
T Consensus 197 Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~ 273 (329)
T 3lz8_A 197 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQR 273 (329)
T ss_dssp EEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCE
T ss_pred EEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCE
Confidence 99999999985 578999999999999999999999999999999999999999999999997 78999999 799999
Q ss_pred EEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 310 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 310 ~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
+||+|+|||.. ..+|||||+|+|.||++ ||++|+
T Consensus 274 ~rl~G~GmP~~---~~rGDL~v~~~V~~P~~--l~~~q~ 307 (329)
T 3lz8_A 274 LRIKGKGLVSK---THTGDLFAVIKIVMPTK--PDEKAR 307 (329)
T ss_dssp EEETTCSCBCS---SCBCCEEEEEEECCCSS--CCHHHH
T ss_pred EEEcCCCCCCC---CCCCCEEEEEEEECCCC--CCHHHH
Confidence 99999999975 36899999999999999 999875
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=6.1e-45 Score=317.38 Aligned_cols=171 Identities=36% Similarity=0.630 Sum_probs=152.0
Q ss_pred CCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCc
Q psy4972 113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGE 192 (349)
Q Consensus 113 ~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 192 (349)
++|+.+.|+|||+|||+|+++++.+.+.
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~---------------------------------------------------- 29 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHK---------------------------------------------------- 29 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEE----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecc----------------------------------------------------
Confidence 3688999999999999999999987631
Q ss_pred ceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEee
Q psy4972 193 GEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTET 272 (349)
Q Consensus 193 G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~ 272 (349)
|..|+|.+++.+.+.++|+||||+++|++|+|+|+|++++++.+|||||+|++++|+.|+|+|+||+++++
T Consensus 30 ---------c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~ 100 (181)
T 3agx_A 30 ---------RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPAR 100 (181)
T ss_dssp ---------EECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred ---------cCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEE
Confidence 33333444456788999999999999999999999999988999999999999999999999999999999
Q ss_pred cCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 273 ITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 273 I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
||+++|++|++++|+||||+.+.|++|++ +++|+++||+|+|||..++++.+|||||+|+|.||++ ||++|+
T Consensus 101 Isl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~--ls~~q~ 172 (181)
T 3agx_A 101 ISLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPER--IPQTSR 172 (181)
T ss_dssp EEHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSC--CCHHHH
T ss_pred cCHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence 99999999999999999998899999887 8999999999999998765567899999999999999 999885
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.9e-43 Score=305.85 Aligned_cols=170 Identities=36% Similarity=0.616 Sum_probs=155.8
Q ss_pred CCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCC
Q psy4972 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQG 191 (349)
Q Consensus 112 ~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G 191 (349)
++.|+.+.|.|||+|||+|+++++.+.+.+.|++
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 3679999999999999999999999999888741
Q ss_pred cceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCC-CCCCCCccEEEEEEEccCCccccccceeEEE
Q psy4972 192 EGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTT 270 (349)
Q Consensus 192 ~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~-~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 270 (349)
+++.+.+.++|+||||+++|++|+|+|+|++ .+++.+|||||+|++++|+.|+|+|+||+++
T Consensus 36 -----------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~ 98 (180)
T 2q2g_A 36 -----------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMK 98 (180)
T ss_dssp -----------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEE
T ss_pred -----------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEE
Confidence 1234568899999999999999999999999 5788999999999999999999999999999
Q ss_pred eecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972 271 ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348 (349)
Q Consensus 271 l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~ 348 (349)
++||+++|++|++++|+||||+.+.|++|++ +++|+++||+|+|||..++++.+|||||+|+|.||++ ||++|+
T Consensus 99 ~~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~--Ls~~q~ 172 (180)
T 2q2g_A 99 VTIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKS--LTPEQK 172 (180)
T ss_dssp EEEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSC--CCHHHH
T ss_pred EEcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence 9999999999999999999998899999988 8999999999999998766567899999999999999 999885
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=3.9e-41 Score=290.62 Aligned_cols=166 Identities=31% Similarity=0.544 Sum_probs=150.2
Q ss_pred CCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcc
Q psy4972 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEG 193 (349)
Q Consensus 114 ~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 193 (349)
+|+.+.|.|||+|||+|+++++.+.+.. +
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~----------------------------------------------- 29 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P----------------------------------------------- 29 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-----------------------------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-----------------------------------------------
Confidence 3788999999999999999999998651 0
Q ss_pred eEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCC-CCCCCccEEEEEEEccCCccccccceeEEEee
Q psy4972 194 EVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTET 272 (349)
Q Consensus 194 ~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~-~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~ 272 (349)
.|.+ +.+.++|+||||+++|++|+|+|+|+++ +++.+|||||+|++++|+.|+|+|+||+++++
T Consensus 30 --------------~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~ 94 (170)
T 1c3g_A 30 --------------HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94 (170)
T ss_dssp --------------TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEEC
T ss_pred --------------CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEE
Confidence 1123 4678999999999999999999999964 67889999999999999999999999999999
Q ss_pred cCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972 273 ITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349 (349)
Q Consensus 273 I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~ 349 (349)
|++++|++|++++|+||||+.+.|++|++ +++|+++||+|+|||..++++.+|||||+|+|.||++ ||++|++
T Consensus 95 Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~--Ls~~q~~ 167 (170)
T 1c3g_A 95 LSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS--LNDAQKR 167 (170)
T ss_dssp CBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS--CCTTHHH
T ss_pred cCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCC--CCHHHHH
Confidence 99999999999999999998889999988 8999999999999998766657899999999999999 9999853
No 6
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-24 Score=176.30 Aligned_cols=89 Identities=39% Similarity=0.594 Sum_probs=79.9
Q ss_pred ccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcC
Q psy4972 259 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338 (349)
Q Consensus 259 ~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P 338 (349)
.|+|+|+||+++++|+|++|++|++++|+||||+++.|+||+|+++++|+++||+|+|||..+++ .+|||||+|+|.||
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 48999999999999999999999999999999998999999999999999999999999987665 68999999999999
Q ss_pred CCCCCCcccc
Q psy4972 339 ESYFNNDAKL 348 (349)
Q Consensus 339 ~~~~ls~~q~ 348 (349)
++.|||++|+
T Consensus 80 ~~~~ls~~q~ 89 (121)
T 1xao_A 80 ENHFTSEENL 89 (121)
T ss_dssp CTTCSCHHHH
T ss_pred CCCCCCHHHH
Confidence 9989998875
No 7
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.90 E-value=4.4e-24 Score=170.21 Aligned_cols=86 Identities=23% Similarity=0.374 Sum_probs=79.7
Q ss_pred ccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEE
Q psy4972 255 KPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334 (349)
Q Consensus 255 ~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~ 334 (349)
++|+.|+|+|+||+++++|+|.||++|++++|+|+|| .+.|+||+| +++|+++||+|+|||.. + .+|||||+|+
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG-~~~v~ip~g--~~~G~~~rl~G~G~p~~-~--~~GDL~v~~~ 75 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPG--SQAGQRLRIKGKGLVSK-T--HTGDLFAVIK 75 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSS-CEEEEECTT--CCTTCEEEETTCSCBCS-S--CBCCEEEEEE
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCC-CEEEeeCCC--cCcCeEEEECCccCCCC-C--CCcCEEEEEE
Confidence 6899999999999999999999999999999999999 589999999 89999999999999973 2 6999999999
Q ss_pred EEcCCCCCCCcccc
Q psy4972 335 VQFPESYFNNDAKL 348 (349)
Q Consensus 335 v~~P~~~~ls~~q~ 348 (349)
|.||++ ||++|+
T Consensus 76 V~~P~~--Ls~~q~ 87 (109)
T 3i38_A 76 IVMPTK--PDEKAR 87 (109)
T ss_dssp ECCCSS--CCHHHH
T ss_pred EECCCC--CCHHHH
Confidence 999999 999885
No 8
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.86 E-value=2.6e-22 Score=148.73 Aligned_cols=68 Identities=62% Similarity=0.968 Sum_probs=63.7
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQ 69 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 69 (349)
...+||+||||+++|+.++||+|||+|+++||||+++++.++|++|++||++|+||.+|+.||++|++
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 45799999999999999999999999999999999998889999999999999999999999999863
No 9
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.2e-22 Score=155.86 Aligned_cols=72 Identities=53% Similarity=0.894 Sum_probs=68.4
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE 73 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 73 (349)
...|||+||||+++|+.++||+|||+|+++||||+++.+.++|++|++||++|+||.+|+.||++|++++..
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 568999999999999999999999999999999999988899999999999999999999999999887764
No 10
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.86 E-value=1.2e-22 Score=160.61 Aligned_cols=91 Identities=49% Similarity=0.852 Sum_probs=67.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC-C
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG-G 78 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-~ 78 (349)
..|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||++|++++..++.+ +
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 479999999999999999999999999999999985 467899999999999999999999999999887653221 1
Q ss_pred CCC---ChhhHHHhhhcC
Q psy4972 79 GAD---FSDDLISQLFGG 93 (349)
Q Consensus 79 g~~---~~~d~f~~~fg~ 93 (349)
++. ++.++|+.+|+.
T Consensus 82 ~~~~~~~~~~~f~~~f~~ 99 (103)
T 1bq0_A 82 GFGGGADFSDIFGDVFGD 99 (103)
T ss_dssp ------------------
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 111 234667777653
No 11
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=6.4e-22 Score=148.13 Aligned_cols=70 Identities=54% Similarity=0.932 Sum_probs=65.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE 73 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 73 (349)
.|||+||||+++|+.++||+|||+|+++||||+++ .+.++|+.|++||++|+||.+|+.||++|.+++.+
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 69999999999999999999999999999999985 57899999999999999999999999999887653
No 12
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=150.05 Aligned_cols=73 Identities=48% Similarity=0.794 Sum_probs=67.2
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK 74 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 74 (349)
...|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||++|..++..+
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 4679999999999999999999999999999999986 467899999999999999999999999998776543
No 13
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=145.48 Aligned_cols=69 Identities=52% Similarity=0.853 Sum_probs=64.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQG 70 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 70 (349)
...|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||++|..+
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 4679999999999999999999999999999999985 46899999999999999999999999998754
No 14
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=147.14 Aligned_cols=70 Identities=59% Similarity=0.878 Sum_probs=64.8
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGI 71 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~ 71 (349)
...|||+||||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++|+.++
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 35799999999999999999999999999999999974 46799999999999999999999999998654
No 15
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=155.23 Aligned_cols=102 Identities=23% Similarity=0.534 Sum_probs=89.8
Q ss_pred CCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCC
Q psy4972 113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQG 191 (349)
Q Consensus 113 ~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G 191 (349)
+.|+.++|.|||+|||+|.++++.+.+.+.|+.|+|+|+.+++ ..+|+.|+|+|++...+ + ++ +.+.+|+.|+|
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G--~~-~~~~~C~~C~G 75 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--G--PF-VMRSTCRRCGG 75 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--T--TE-EEEEECSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--C--CE-EEEEECCcCCC
Confidence 3578889999999999999999999999999999999998875 68999999999876543 3 33 46789999999
Q ss_pred cceEEcCCCCCCcCCCccEEEeeEEEEEEe
Q psy4972 192 EGEVMNEKDRCGSCAGRKTLSVKKVLEVNV 221 (349)
Q Consensus 192 ~G~~~~~~~~C~~C~g~g~~~~~~~~~v~I 221 (349)
.|+++ .++|+.|+|.|++.+.+.|+|++
T Consensus 76 ~G~~i--~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 76 RGSII--ISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SSEEC--SSCCSSSSSCSEECCCCSSCCSC
T ss_pred cceEC--CCcCCCCCCeeEEEEEEEEEEEc
Confidence 99999 78999999999999888877764
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=152.30 Aligned_cols=71 Identities=56% Similarity=0.921 Sum_probs=63.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE 73 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 73 (349)
++|||+||||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++|.+++..
T Consensus 1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 4799999999999999999999999999999999974 5789999999999999999999999999877653
No 17
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-21 Score=145.43 Aligned_cols=69 Identities=52% Similarity=0.863 Sum_probs=64.8
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQG 70 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 70 (349)
...|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||++|..+
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4689999999999999999999999999999999985 57899999999999999999999999998764
No 18
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-21 Score=149.39 Aligned_cols=72 Identities=60% Similarity=0.863 Sum_probs=66.3
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE 73 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 73 (349)
...|||+||||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++|..++..
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 35799999999999999999999999999999999864 5789999999999999999999999999877654
No 19
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=7.1e-21 Score=146.08 Aligned_cols=69 Identities=58% Similarity=0.902 Sum_probs=64.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQG 70 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 70 (349)
...|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||++|+..
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 3579999999999999999999999999999999985 57899999999999999999999999998753
No 20
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.5e-21 Score=148.59 Aligned_cols=67 Identities=40% Similarity=0.640 Sum_probs=62.2
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSDEKKRATYDRYG 67 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 67 (349)
|...+||+||||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 456899999999999999999999999999999999863 6889999999999999999999999853
No 21
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-21 Score=152.56 Aligned_cols=70 Identities=31% Similarity=0.557 Sum_probs=65.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGI 71 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~ 71 (349)
...|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||++|..++
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 4589999999999999999999999999999999986 368999999999999999999999999998765
No 22
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.8e-20 Score=149.48 Aligned_cols=71 Identities=54% Similarity=0.918 Sum_probs=65.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK 72 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 72 (349)
...+||+||||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++|..++.
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 45799999999999999999999999999999999864 578999999999999999999999999987654
No 23
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.79 E-value=2e-20 Score=145.38 Aligned_cols=68 Identities=34% Similarity=0.574 Sum_probs=62.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---------chHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAYEVLSDEKKRATYDRYGI 68 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 68 (349)
|...|||+||||+++|+.+|||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||.+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 35689999999999999999999999999999999975 356899999999999999999999998754
No 24
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=3.2e-19 Score=158.24 Aligned_cols=71 Identities=51% Similarity=0.896 Sum_probs=66.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccc
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK 74 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 74 (349)
+|||++|||+++|+.++||+|||+|+++||||+++ ++.++|++|++||++|+||.+|+.||++|+.++...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~ 75 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 75 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence 69999999999999999999999999999999985 478899999999999999999999999998877543
No 25
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.77 E-value=1.8e-19 Score=143.78 Aligned_cols=68 Identities=37% Similarity=0.654 Sum_probs=63.1
Q ss_pred CccccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972 2 ADTKLYEVLGVSKSA-SDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSDEKKRATYDRYGIQ 69 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a-~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 69 (349)
...|||+||||+++| +.++||+|||+|++++|||+++. +.++|++|++||++|+||.+|+.||+++..
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 357999999999999 99999999999999999999864 578999999999999999999999998763
No 26
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=134.06 Aligned_cols=61 Identities=39% Similarity=0.572 Sum_probs=57.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhccchhhhhh
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRAT 62 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~--~~~~~~f~~i~~Ay~~L~d~~~r~~ 62 (349)
...|||+||||+++|+.+|||+|||+|+++||||++ +.+.++|++|++||++|+||.+|+.
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 357999999999999999999999999999999999 4688999999999999999999874
No 27
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=146.83 Aligned_cols=68 Identities=34% Similarity=0.589 Sum_probs=62.2
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---------hHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---------AGDKFKEISFAYEVLSDEKKRATYDRYGI 68 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 68 (349)
|..+|||+||||+++|+.++||+|||+|++++|||+++. +.++|++|++||++|+||.+|+.||.++.
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 356899999999999999999999999999999999853 35899999999999999999999998754
No 28
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.73 E-value=2.5e-19 Score=143.46 Aligned_cols=65 Identities=35% Similarity=0.560 Sum_probs=61.1
Q ss_pred ccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972 3 DTKLYEVLGVSKSASD--QEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGI 68 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 68 (349)
..+||+||||+++|+. ++||+|||+|++++|||+++. .++|++|++||++|+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 3689999999999999 999999999999999999976 5899999999999999999999999875
No 29
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.72 E-value=2.5e-18 Score=128.95 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=59.0
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972 4 TKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQG 70 (349)
Q Consensus 4 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 70 (349)
.++|+||||+++ |+.++||+|||+|++++|||+++ +.++|++|++||++|+|+.+|+. |.||..+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~-~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CHHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 579999999999 99999999999999999999985 46899999999999999999988 5577654
No 30
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.72 E-value=5.4e-19 Score=151.05 Aligned_cols=64 Identities=36% Similarity=0.546 Sum_probs=57.9
Q ss_pred cccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972 4 TKLYEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGI 68 (349)
Q Consensus 4 ~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 68 (349)
.|||++|||+++|+ .+|||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||+||.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 68999999999998 6999999999999999999976 4789999999999999999999999985
No 31
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=3.3e-18 Score=130.66 Aligned_cols=61 Identities=28% Similarity=0.365 Sum_probs=55.8
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhh
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRAT 62 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~ 62 (349)
...++|+||||+++|+.+|||+|||+|+++||||++++ +.++|++|++||++|+|...|..
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45789999999999999999999999999999999975 57999999999999999877743
No 32
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.64 E-value=7.4e-17 Score=138.57 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=58.5
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972 5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRYG 67 (349)
Q Consensus 5 ~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 67 (349)
|||++|||++++ +.++||+|||+|+++||||+++. +.++|+.|++||++|+||.+|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 899999999999 99999999999999999999863 3468999999999999999999999864
No 33
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.64 E-value=1.1e-16 Score=137.86 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=59.1
Q ss_pred CccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972 2 ADTKLYEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRYG 67 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 67 (349)
..+|||++|||+++++ .++||+|||+|+++||||+++. +.++|+.|++||++|+||.+|+.||...
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 3579999999999998 9999999999999999999863 4578999999999999999999999743
No 34
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.5e-17 Score=119.11 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=53.3
Q ss_pred CCccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhh
Q psy4972 1 MADTKLYEVLGVSK-SASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60 (349)
Q Consensus 1 ~~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r 60 (349)
|...++|+||||++ +|+.++||+|||+|+++||||++ ++.++|++|++||++|+|+..|
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhc
Confidence 44578999999999 79999999999999999999997 5668999999999999998665
No 35
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.63 E-value=8.5e-17 Score=138.27 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=56.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccchhhhhhh
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSDEKKRATY 63 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d~~~r~~Y 63 (349)
.|||++|||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 589999999999999999999999999999999853 578999999999999999999987
No 36
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=140.22 Aligned_cols=63 Identities=17% Similarity=0.329 Sum_probs=57.7
Q ss_pred ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
..|||++|||+++ ++.++||+|||+|+++||||+++. +.++|+.|++||++|+||.+|+.||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4799999999996 799999999999999999999863 34689999999999999999999995
No 37
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.63 E-value=7.4e-17 Score=123.61 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=49.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccc
Q psy4972 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSD 56 (349)
Q Consensus 4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d 56 (349)
.++|++|||++.|+.+|||+|||++|++||||+|++ ++++|++|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999864 57899999999999975
No 38
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.61 E-value=1.5e-16 Score=137.70 Aligned_cols=65 Identities=23% Similarity=0.468 Sum_probs=60.2
Q ss_pred cccccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972 3 DTKLYEVL------GVSK-SASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYG 67 (349)
Q Consensus 3 ~~~~y~iL------gv~~-~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 67 (349)
.+|||++| |+++ +|+.++||+|||+|+++||||+++.+.++|+.|++||++|+||.+|+.||...
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 57999999 4665 89999999999999999999999888899999999999999999999999843
No 39
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.61 E-value=1.5e-16 Score=125.77 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=50.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----------hHHHHHHHHHHHHhccchh
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----------AGDKFKEISFAYEVLSDEK 58 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----------~~~~f~~i~~Ay~~L~d~~ 58 (349)
+.|||++|+++. |+.++||+|||+|+++||||+|+. ++++|++|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999996 999999999999999999999852 4789999999999999985
No 40
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.60 E-value=6.7e-17 Score=169.67 Aligned_cols=73 Identities=51% Similarity=0.889 Sum_probs=40.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccc
Q psy4972 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK 74 (349)
Q Consensus 2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 74 (349)
.++|||++|||+++|+.+|||+|||+|+++||||+++ ++.++|++|++||++|+||.+|+.||+||++++...
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 3579999999999999999999999999999999985 467899999999999999999999999999887644
No 41
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.49 E-value=5.5e-14 Score=105.25 Aligned_cols=77 Identities=31% Similarity=0.768 Sum_probs=66.3
Q ss_pred CCcceeeeeeeEeccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972 130 GKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGR 208 (349)
Q Consensus 130 G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~ 208 (349)
|.+++|.+.+.+.|+.|+|+|..... ..+|+.|+|+|.++..+ |++ +.+.+|+.|+|.|+++ .++|+.|+|.
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~ 73 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFF-AVQQTCPHCQGRGTLI--KDPCNKCHGH 73 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTE-EEEEECTTTTTSSEEC--SSBCGGGTTS
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCC-EEeeECcCCCCccEEC--CCcCCCCCCe
Confidence 67889999999999999999987764 57999999999876533 455 5778999999999998 7899999999
Q ss_pred cEEEe
Q psy4972 209 KTLSV 213 (349)
Q Consensus 209 g~~~~ 213 (349)
|++.+
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 98853
No 42
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.30 E-value=3.2e-12 Score=116.13 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=38.4
Q ss_pred EEEEEecCC--CccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCc--ccccccee
Q psy4972 216 VLEVNVDKG--MKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDR--FQRQGINL 267 (349)
Q Consensus 216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~--f~r~g~dL 267 (349)
.++|+||+| +++|++++|+|+|.+..+. ..|||||+++|.-+.. ++.+...|
T Consensus 190 ~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~ 246 (248)
T 1nlt_A 190 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK 246 (248)
T ss_dssp EEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred EEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence 589999999 9999999999999986433 5799999999997776 66665544
No 43
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=2e-10 Score=91.07 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=44.8
Q ss_pred EEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEE
Q psy4972 216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~ 269 (349)
.++|+||+|+++|++++++|+|.+..+ ..|||||+++|.-+..++.+..+++.
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~ 91 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAVIKIVMPTKPDEKARELWQ 91 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred CEEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999999998744 78999999999988877766655443
No 44
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.95 E-value=3.7e-10 Score=80.57 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=49.6
Q ss_pred CCccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccch
Q psy4972 1 MADTKLYEVLGVSKS---ASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDE 57 (349)
Q Consensus 1 ~~~~~~y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~ 57 (349)
|...+.|.||||++. ++.++|++|||+|...+|||+. ++.-....|++|++.|...
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 566789999999999 9999999999999999999996 5667788899999999643
No 45
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.94 E-value=5.2e-10 Score=107.48 Aligned_cols=63 Identities=48% Similarity=0.722 Sum_probs=54.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
..++|.+||+.++++.++|+++|+++++++|||+.+. +.++|++|.+||++|+||++|+.||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 3589999999999999999999999999999999863 56799999999999999999999997
No 46
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.4e-09 Score=87.75 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=42.3
Q ss_pred EEEEEecCC--CccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCc--cccccceeEE
Q psy4972 216 VLEVNVDKG--MKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDR--FQRQGINLVT 269 (349)
Q Consensus 216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~--f~r~g~dL~~ 269 (349)
.+.|+||+| +++|++++++|+|.+..++ ..|||||+++|.-+.. ++.+..+++.
T Consensus 35 ~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l~ 93 (121)
T 1xao_A 35 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKLE 93 (121)
T ss_dssp EEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHHH
T ss_pred EEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH
Confidence 578999999 9999999999999986543 6899999999998876 7766655443
No 47
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.69 E-value=3.6e-08 Score=84.26 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=58.2
Q ss_pred eeEEEeecCHHHHhCCcEEEEecC----CC----cEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEE
Q psy4972 266 NLVTTETITLTEALCGFTKVIKHL----DD----RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ 336 (349)
Q Consensus 266 dL~~~l~I~l~~al~G~~~~i~~l----~g----~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~ 336 (349)
|+.+.+.|||.||+.|++++|... .| +++.|+||+| +.+|+++|++|+|-+...+ +..|||||.+++.
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~ 77 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK 77 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCC--ccCCCEEEEeccccCCCCC-CccccEEEEEEEc
Confidence 789999999999999999988643 23 6899999999 8999999999999864333 3579999999996
No 48
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.68 E-value=3.9e-08 Score=84.82 Aligned_cols=69 Identities=22% Similarity=0.181 Sum_probs=58.8
Q ss_pred cceeEEEeecCHHHHhCCcEEEEecC-----------CCcEEEEEcCCCCCcCCCcEEEEcCCCcC-CCCCCCCCCcEEE
Q psy4972 264 GINLVTTETITLTEALCGFTKVIKHL-----------DDRQLLITHPPGEVIKPEDIKGIVGEGMP-IYKNPYEKGTLYI 331 (349)
Q Consensus 264 g~dL~~~l~I~l~~al~G~~~~i~~l-----------~g~~i~v~ip~~~v~~~g~~~~l~g~G~p-~~~~~~~~Gdl~v 331 (349)
+.|+.+.+.|||.||+.|++++|... ..+++.|+||+| +.+|+++|++|+|-+ ..+ +..|||||
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~g~~g--g~~GDl~v 78 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPG--WKDGTKLTYSGEGDQESPG--TSPGDLVL 78 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTT--CCTTCEEEETTCSCCSSTT--SCCCEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCC--CcCCcEEEEeeccCCCCCC--CccccEEE
Confidence 67999999999999999999988643 246799999999 899999999999987 332 35899999
Q ss_pred EEEEE
Q psy4972 332 KFDVQ 336 (349)
Q Consensus 332 ~~~v~ 336 (349)
.+++.
T Consensus 79 ~i~~~ 83 (180)
T 2q2g_A 79 IIQTK 83 (180)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99986
No 49
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.62 E-value=8.3e-08 Score=82.83 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=56.5
Q ss_pred cceeEEEeecCHHHHhCCcEEEEecC------CC-------cEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEE
Q psy4972 264 GINLVTTETITLTEALCGFTKVIKHL------DD-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY 330 (349)
Q Consensus 264 g~dL~~~l~I~l~~al~G~~~~i~~l------~g-------~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~ 330 (349)
+.|+.+.+.|||.||+.|++++|... .| +++.|+||+| +.+|+++|++|+|-+..+ +..||||
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~G~G~~~~~--g~~GDl~ 77 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG--WKEGTKITFPKEGDQTSN--NIPADIV 77 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCSS--SCCCCEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCC--ccCCcEEEEeeccccCCC--CCcccEE
Confidence 56899999999999999999888632 24 5789999999 899999999999988654 3689999
Q ss_pred EEEEEE
Q psy4972 331 IKFDVQ 336 (349)
Q Consensus 331 v~~~v~ 336 (349)
|.+++.
T Consensus 78 v~i~~~ 83 (181)
T 3agx_A 78 FVLKDK 83 (181)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999987
No 50
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.56 E-value=7.5e-08 Score=90.69 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=56.2
Q ss_pred cccceeEEEeecCHHHHhCCcEEEEecC------C-------CcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCc
Q psy4972 262 RQGINLVTTETITLTEALCGFTKVIKHL------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT 328 (349)
Q Consensus 262 r~g~dL~~~l~I~l~~al~G~~~~i~~l------~-------g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gd 328 (349)
+.|.||.+.+.|+|.||+.|.+..|..- . .+++.|+||+| +++|+++|++|+|.|..++ +..||
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~G--v~~G~~Irl~G~G~~g~~g-g~~GD 214 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAG--VVDGQRIRLKGQGTPGENG-GPNGD 214 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTT--CCTTCEEEESSCSCCC----CCCCC
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCC--CCCCCEEEEcccccCCCCC-CCCCc
Confidence 4577888888888888888877766432 2 34688999999 8999999999999986543 35899
Q ss_pred EEEEEEEE
Q psy4972 329 LYIKFDVQ 336 (349)
Q Consensus 329 l~v~~~v~ 336 (349)
|||+|+|.
T Consensus 215 L~v~I~v~ 222 (329)
T 3lz8_A 215 LWLVIHIA 222 (329)
T ss_dssp EEEEECCC
T ss_pred EEEEEEEe
Confidence 99999886
No 51
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.75 E-value=7e-06 Score=55.76 Aligned_cols=32 Identities=22% Similarity=0.750 Sum_probs=26.4
Q ss_pred EeeeeCCCCCCcceEEcCCCCCCcCCCccEEEee
Q psy4972 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVK 214 (349)
Q Consensus 181 ~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~ 214 (349)
+++.+|+.|+|+|+++ .++|+.|+|.|++.+.
T Consensus 7 q~~~~C~~C~GsG~~i--~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 7 DLETTCPNCNGSGREE--PEPCPKCLGKGVILTA 38 (53)
T ss_dssp HHEEECTTTTTSCEET--TEECTTTTTSSEEECH
T ss_pred ceeccCcCCcccccCC--CCcCCCCCCcEEEEEE
Confidence 5677899999999888 6889999999887654
No 52
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.65 E-value=1.7e-05 Score=58.60 Aligned_cols=45 Identities=36% Similarity=0.829 Sum_probs=35.9
Q ss_pred eeEeccCCCCCCCCCC------CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972 139 KSVICSTCNGKGSKSG------ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM 196 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 196 (349)
....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|.|++.
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL-------------IKDPCNKCHGHGRVE 77 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE-------------CSSBCGGGTTSSEEE
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE-------------CCCcCCCCCCeEEEe
Confidence 3568999999996531 13589999999973 457899999999875
No 53
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=2.5e-05 Score=60.90 Aligned_cols=44 Identities=34% Similarity=0.762 Sum_probs=35.7
Q ss_pred eEeccCCCCCCCCC---C---CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972 140 SVICSTCNGKGSKS---G---ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM 196 (349)
Q Consensus 140 ~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 196 (349)
...|+.|+|+|... + ...+|+.|+|+|. .+..+|+.|+|.|++.
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~-------------~i~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGS-------------IIISPCVVCRGAGQAK 94 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSE-------------ECSSCCSSSSSCSEEC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcce-------------ECCCcCCCCCCeeEEE
Confidence 46799999999542 1 2468999999997 3467999999999886
No 54
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.50 E-value=8e-07 Score=90.32 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=56.9
Q ss_pred eeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC----cccCCCCCccceEEEE--------EEecCccceEeee
Q psy4972 117 VHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA----TFTCASCRGCGFKIHH--------RIIGPNMTQQIQA 184 (349)
Q Consensus 117 ~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~----~~~C~~C~G~G~~~~~--------~~~~~g~~~~~~~ 184 (349)
.+.++++|+|++.|.++++.+.+.+.|..|+|+|+..+. ..+|+.|+|+...... ...=.|.+.+...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 467889999999999999999999999999999998874 6799999999421000 0000011113345
Q ss_pred eCCCCCCcce
Q psy4972 185 RCSDCQGEGE 194 (349)
Q Consensus 185 ~C~~C~G~G~ 194 (349)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 7888888774
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.04 E-value=0.00029 Score=47.70 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=5.8
Q ss_pred ccCCCCCccce
Q psy4972 157 FTCASCRGCGF 167 (349)
Q Consensus 157 ~~C~~C~G~G~ 167 (349)
.+|+.|+|+|.
T Consensus 10 ~~C~~C~GsG~ 20 (53)
T 2bx9_A 10 VACPKCERAGE 20 (53)
T ss_dssp EECTTTTTSSE
T ss_pred ccCCCCcceec
Confidence 34555555554
No 56
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.99 E-value=0.00035 Score=47.29 Aligned_cols=26 Identities=35% Similarity=0.866 Sum_probs=14.5
Q ss_pred EeccCCCCCCCCCCCcccCCCCCccceE
Q psy4972 141 VICSTCNGKGSKSGATFTCASCRGCGFK 168 (349)
Q Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 168 (349)
..|+.|+|+|.... .+|+.|+|+|.+
T Consensus 10 ~~C~~C~GsG~~~~--~~C~~C~G~G~v 35 (53)
T 2bx9_A 10 VACPKCERAGEIEG--TPCPACSGKGVI 35 (53)
T ss_dssp EECTTTTTSSEETT--EECTTTTTSSEE
T ss_pred ccCCCCcceeccCC--CCCccCCCCccE
Confidence 45666666665432 456666666654
No 57
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.97 E-value=0.00037 Score=47.15 Aligned_cols=13 Identities=31% Similarity=1.020 Sum_probs=6.8
Q ss_pred eeCCCCCCcceEE
Q psy4972 184 ARCSDCQGEGEVM 196 (349)
Q Consensus 184 ~~C~~C~G~G~~~ 196 (349)
.+|+.|+|.|.+.
T Consensus 24 ~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 24 EPCPKCLGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEEE
T ss_pred CcCCCCCCcEEEE
Confidence 4555555555543
No 58
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=62.25 E-value=14 Score=26.02 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH--HHHHhccc-hhhhhhhhccc
Q psy4972 15 SASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEIS--FAYEVLSD-EKKRATYDRYG 67 (349)
Q Consensus 15 ~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~--~Ay~~L~d-~~~r~~YD~~G 67 (349)
-++.+|.+++|++|....+=+..-.=++....|. .-|.+|.+ .++++.|+.|-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999886333321112222232 25777776 45666777663
No 59
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=61.42 E-value=11 Score=25.49 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHHHHH---HHHHHhccc-hh-hhhhhhccc
Q psy4972 18 DQEIKKAYRKLAKEFHPDKNPEAGDKFKEI---SFAYEVLSD-EK-KRATYDRYG 67 (349)
Q Consensus 18 ~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i---~~Ay~~L~d-~~-~r~~YD~~G 67 (349)
.+|..+||.+|.+..+=|-+=.=+...+.| ..-|.+|.| |. +++.|+.|-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 357889999999977544443334556666 348999997 54 777888773
No 60
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=54.02 E-value=25 Score=31.37 Aligned_cols=18 Identities=0% Similarity=0.041 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy4972 15 SASDQEIKKAYRKLAKEF 32 (349)
Q Consensus 15 ~a~~~~Ik~ayr~l~~~~ 32 (349)
.++..+|++.|+...+.+
T Consensus 8 ~~~~~~~~~~f~~Fl~~~ 25 (279)
T 1ltl_A 8 TVDKSKTLTKFEEFFSLQ 25 (279)
T ss_dssp -CCHHHHHHHHHHHTTSH
T ss_pred cCChHHHHHHHHHHhccc
Confidence 456778888877766543
No 61
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=49.82 E-value=29 Score=23.59 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 23 KAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 23 ~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
+..|...+.-||+......+.-+.|.+.|..|++.++....+.
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 3455556677998765456778889999999998877665554
No 62
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.01 E-value=22 Score=25.42 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
-..+|...+.-||+.. ...+.-+.+.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~-~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC-SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777888899986 4567788999999999988887766654
No 63
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=48.77 E-value=20 Score=34.09 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred cccCCCCCccceEEEEEEecCcc--ceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEE--------------------e
Q psy4972 156 TFTCASCRGCGFKIHHRIIGPNM--TQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLS--------------------V 213 (349)
Q Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~--~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~--------------------~ 213 (349)
...|+.|+..|......-.-|.| +..+...|+.|+=+-.-++....-.- +|..++- .
T Consensus 12 ~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~p-kG~r~tL~V~~~~DLnr~VvKS~tati~ 90 (404)
T 2qkd_A 12 ESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD-QGVRYTLTVRSQEDMNREVVKTDSATTR 90 (404)
T ss_dssp EEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCS-SEEEEEEEECSHHHHTCEEEECTTCEEE
T ss_pred cccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCC-CcEEEEEEECChhcccceEEEcCCcEEE
Confidence 46799998888754433333433 33456789998865333211000000 0111111 1
Q ss_pred eEEEEEEecCCCccCcEEEEcC
Q psy4972 214 KKVLEVNVDKGMKEMQKIYFRG 235 (349)
Q Consensus 214 ~~~~~v~Ip~G~~~G~~i~~~g 235 (349)
.-.+.+.||||...|..-++.|
T Consensus 91 IPEL~~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 91 IPELDFEIPAFSQKGALTTVEG 112 (404)
T ss_dssp EGGGTEEECTTSSCCEEEEHHH
T ss_pred eeeeeEEecCccCCceEEeHHH
Confidence 1156788899988887777765
No 64
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=48.00 E-value=21 Score=33.94 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=13.5
Q ss_pred EEEEEecCCCccCcEEEEcC
Q psy4972 216 VLEVNVDKGMKEMQKIYFRG 235 (349)
Q Consensus 216 ~~~v~Ip~G~~~G~~i~~~g 235 (349)
.+.+.||||...|..-++.|
T Consensus 301 EL~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 301 ELEFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp GGTEEECTTTTCSEEEEHHH
T ss_pred eeeEEecCCCCCceEEeHHH
Confidence 35577777777776666665
No 65
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.00 E-value=28 Score=24.89 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
-+.+|...+.-||+......+.-+.|.+.|..|++.++....|.
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEM 70 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556666777898765456778899999999998877766554
No 66
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=44.41 E-value=61 Score=26.01 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=28.1
Q ss_pred HhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCc
Q psy4972 278 ALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGM 317 (349)
Q Consensus 278 al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~ 317 (349)
.|-|+.+. ...+|..+..++|++.+++||..++|-.+|.
T Consensus 51 ~LgGW~L~-r~v~g~~~~y~FP~~~~L~pg~~VtVwa~g~ 89 (144)
T 3jt0_A 51 PMGGWEMI-RKIGDTSVSYKYTSRYVLKAGQTVTIWAANA 89 (144)
T ss_dssp ECTTCEEE-EEETTEEEEEECCTTCEECTTCEEEEEETTS
T ss_pred ecCCcEEE-EEeCCCceEEEcCCCcEECCCCEEEEEECCC
Confidence 34455554 3457766668889988899999998887665
No 67
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=41.99 E-value=37 Score=22.99 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566777777888865 45667789999999998877665554
No 68
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=41.96 E-value=74 Score=25.32 Aligned_cols=40 Identities=8% Similarity=0.227 Sum_probs=28.6
Q ss_pred HhCCcEEEEecCCCc-EEEEEcCCCCCcCCCcEEEEcCCCcC
Q psy4972 278 ALCGFTKVIKHLDDR-QLLITHPPGEVIKPEDIKGIVGEGMP 318 (349)
Q Consensus 278 al~G~~~~i~~l~g~-~i~v~ip~~~v~~~g~~~~l~g~G~p 318 (349)
.|-|+++. ...+|. .+..+.|++-+++||..++|-..|.-
T Consensus 47 ~L~GW~L~-r~v~g~~~~~y~Fp~~~~L~pg~~VtIws~~~g 87 (139)
T 2lll_A 47 SLGNWRIK-RQVLEGEEIAYKFTPKYILRAGQMVTVWAAGAG 87 (139)
T ss_dssp ECSSCEEE-EEETTSCEEEEECCTTCEECTTCEEEEEEGGGT
T ss_pred ccCCCEEE-EecCCCccEEEEECCCcEECCCCEEEEEeCCCC
Confidence 34555554 344554 37788999989999999999888753
No 69
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=39.54 E-value=32 Score=24.48 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCcc-----hHHHHHHHHHHHHhccc-hhhhhhhhcccc
Q psy4972 16 ASDQEIKKAYRKLAKEFHPDKNPE-----AGDKFKEISFAYEVLSD-EKKRATYDRYGI 68 (349)
Q Consensus 16 a~~~~Ik~ayr~l~~~~hPd~~~~-----~~~~f~~i~~Ay~~L~d-~~~r~~YD~~G~ 68 (349)
.-...++.+|+.+.+...|..... +..+|..-. +|..+.+ .+++.+|+.|-.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 345678899999999887876642 344454443 7999976 567778888753
No 70
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=37.55 E-value=1.3e+02 Score=26.26 Aligned_cols=14 Identities=7% Similarity=0.420 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhC
Q psy4972 20 EIKKAYRKLAKEFH 33 (349)
Q Consensus 20 ~Ik~ayr~l~~~~h 33 (349)
+++++|+.....+.
T Consensus 9 ~~~~~f~~Fl~~f~ 22 (268)
T 2vl6_A 9 DYRDVFIEFLTTFK 22 (268)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhh
Confidence 67788888887775
No 71
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=36.57 E-value=53 Score=23.63 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH--HHHhccchhhhhhhhcccc
Q psy4972 15 SASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISF--AYEVLSDEKKRATYDRYGI 68 (349)
Q Consensus 15 ~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~--Ay~~L~d~~~r~~YD~~G~ 68 (349)
.++.+|-+++|+.|...++-+..-.=+.....|.. -|.+|...++++.|+.|-.
T Consensus 13 ~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y~~ 68 (82)
T 2dod_A 13 IVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVK 68 (82)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCCHHHHHHHHHHHHH
Confidence 46899999999999998864443221222233332 5667765678888888754
No 72
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=36.35 E-value=5.1 Score=40.70 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=31.2
Q ss_pred cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceE-------------------EcCCCCCCcCCCcc
Q psy4972 156 TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEV-------------------MNEKDRCGSCAGRK 209 (349)
Q Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~-------------------~~~~~~C~~C~g~g 209 (349)
...|..|+|+|. -+|.......+|+.|+|.... .+....|..|+...
T Consensus 191 ~~~C~tCHGsGA-------~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~ 256 (669)
T 3pmq_A 191 IDTCNSCHSNLA-------FHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADN 256 (669)
T ss_dssp SHHHHHHHSSCC-------TTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCC
T ss_pred CCcCCCCCCCCC-------cCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCc
Confidence 568999999995 233211245689999998311 12246799999764
No 73
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=35.10 E-value=60 Score=22.76 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567777788899875 45667789999999998777665554
No 74
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=33.19 E-value=60 Score=22.70 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH--NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC--HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 4556666677788765 45667889999999998887766664
No 75
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=32.83 E-value=76 Score=22.85 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A 61 (92)
T 2crj_A 19 LNERREQIRTRHPDLP--FPEITKMLGAEWSKLQPAEKQRYLDEA 61 (92)
T ss_dssp HHHHHHHHHHHCTTCC--HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556677777889865 456677899999999988877766643
No 76
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=31.09 E-value=1.4e+02 Score=23.04 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=27.4
Q ss_pred HhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCc
Q psy4972 278 ALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGM 317 (349)
Q Consensus 278 al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~ 317 (349)
.|-|+.+. ...+|.....+.|++-+++||..++|-.+|.
T Consensus 38 ~L~gW~l~-r~v~~~~~~y~Fp~~~~L~pg~~vtVwa~g~ 76 (123)
T 3hn9_A 38 PMGGWEMI-RKIGDTSVSYKYTSRYVLKAGQTVTIWAANA 76 (123)
T ss_dssp ECTTCEEE-EEETTEEEEEECCTTCEECTTCEEEEEETTS
T ss_pred ecCCcEEE-EEeCCCceEEEcCCCcEECCCCEEEEEECCC
Confidence 34455554 3346655557889888899999998887765
No 77
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=31.08 E-value=28 Score=25.19 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=26.8
Q ss_pred eeEeccCCCCCCCCCCC---cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972 139 KSVICSTCNGKGSKSGA---TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM 196 (349)
Q Consensus 139 ~~~~C~~C~G~G~~~~~---~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 196 (349)
+.+.|..|+..|=.... ...|-.|...|.+...... | .....|-.|+..|.+-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~-p----~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL-P----FHTIYCYNCGGKGHFG 59 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC------------------CCCBCSSSSCBSSCG
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccC-C----CCCCeecccCCCCcCc
Confidence 35679999999855431 4468889888764322111 1 2345788888888753
No 78
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=30.76 E-value=36 Score=26.14 Aligned_cols=39 Identities=10% Similarity=0.307 Sum_probs=19.4
Q ss_pred hcCCcceeee-eeeEeccCCCCCCCCCCCcc-cCCCCCccc
Q psy4972 128 YNGKTTKLQL-TKSVICSTCNGKGSKSGATF-TCASCRGCG 166 (349)
Q Consensus 128 ~~G~~~~i~~-~~~~~C~~C~G~G~~~~~~~-~C~~C~G~G 166 (349)
+.|+...+.. .-...|..|+-.-....... .||.|++.-
T Consensus 60 ~e~a~L~i~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 60 CKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp TSSCCEEEEEECCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred hcCcEEEEEeccceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 3344433332 33566887765433333344 566666553
No 79
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.03 E-value=73 Score=22.95 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+..|...+.-||+.. ..+.-+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~A 61 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS--LEDATLQIEELWKTLSEEEKLKYEEKA 61 (92)
T ss_dssp HHHHHHHHHHHCCSSC--HHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556666777788864 456778899999999988877766654
No 80
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=29.27 E-value=35 Score=26.57 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCC-cch----HHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 23 KAYRKLAKEFHPDKN-PEA----GDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 23 ~ayr~l~~~~hPd~~-~~~----~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
+.++++|..+..... +.+ ...|..+-.+||.+++.+++...|.-
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~~~~e~~~l~~~v 112 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEV 112 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHCcCHHHHhhHHHHH
Confidence 456666666653332 222 23355566688888888888877753
No 81
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=28.56 E-value=1e+02 Score=21.09 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456666667788854 45677889999999998877665554
No 82
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=27.89 E-value=1.8e+02 Score=22.40 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred HhCCcEEEEecCCCc-EEEEEcCCCCCcCCCcEEEEcCCCcC
Q psy4972 278 ALCGFTKVIKHLDDR-QLLITHPPGEVIKPEDIKGIVGEGMP 318 (349)
Q Consensus 278 al~G~~~~i~~l~g~-~i~v~ip~~~v~~~g~~~~l~g~G~p 318 (349)
.|-|+++.= ..+|. .+..+.|++-+++||..++|-..|.-
T Consensus 32 ~L~gW~l~r-~v~~~~~~~y~Fp~~~~L~pg~~vtIws~~~g 72 (121)
T 1ifr_A 32 SMGNWQIKR-QNGDDPLLTYRFPPKFTLKAGQVVTIWAAGAG 72 (121)
T ss_dssp ECTTCEEEE-EETTSCCEEEECCSSCEECTTCEEEEEETTSS
T ss_pred ccCCCEEEE-EcCCCccEEEEeCCCcEECCCCEEEEEeCCCC
Confidence 345555443 34554 36788999888999999999888753
No 83
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=27.16 E-value=1.9e+02 Score=23.19 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.2
Q ss_pred HhCCcEEEEecCCCc-EEEEEcCCCCCcCCCcEEEEcCCCcC
Q psy4972 278 ALCGFTKVIKHLDDR-QLLITHPPGEVIKPEDIKGIVGEGMP 318 (349)
Q Consensus 278 al~G~~~~i~~l~g~-~i~v~ip~~~v~~~g~~~~l~g~G~p 318 (349)
.|-|+.+.= ..||. .+..+.|++-+++||..++|-..+.-
T Consensus 63 ~L~GW~L~r-~vdg~~~~~y~Fp~~~~L~pg~tVtIws~~~g 103 (151)
T 1ufg_A 63 SMGNWQIRR-QNGDDPLMTYRFPPKFTLKAGQVVTIWASGAG 103 (151)
T ss_dssp ECSSCEEEE-EETTSCCEEEECCTTCEECTTCEEEEEESSSS
T ss_pred ccCCCEEEE-ecCCCccEEEEECCCcEECCCCEEEEEeCCCC
Confidence 345665542 23554 36788899888999999999888753
No 84
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=26.38 E-value=1.6e+02 Score=20.52 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=31.7
Q ss_pred cEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEE
Q psy4972 282 FTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ 336 (349)
Q Consensus 282 ~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~ 336 (349)
+-..|...|...+.+....| .+.|+|+.|-+.+=.-..|.+.|.=+|.
T Consensus 11 Gv~~V~sFd~e~i~L~T~~G-------~L~IkG~~L~I~~L~lE~Gev~IeG~I~ 58 (71)
T 2ks0_A 11 GVSKVQSFDPKEILLETIQG-------VLSIKGEKLGIKHLDLKAGQVEVEGLID 58 (71)
T ss_dssp CEEEEEEECSSEEEEEETTE-------EEEEEEECCC-----CCTTCEEEEEEEE
T ss_pred CCcCEEEECCCEEEEEeCce-------EEEEEcCCcEEeEeecCccEEEEEEEEE
Confidence 34556667777888876555 6789999998876556789998875554
No 85
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.23 E-value=88 Score=25.41 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
-+.+|.-.+.-||+..-...+..+.+.+.|..|++.++....|.
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 70 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45566667778999644456778889999999998887766554
No 86
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=25.76 E-value=85 Score=22.51 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.++...+|..
T Consensus 32 ~~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS--ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666777888854 446677899999999988777766654
No 87
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.63 E-value=40 Score=26.77 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=7.0
Q ss_pred eeEeccCCCCCC
Q psy4972 139 KSVICSTCNGKG 150 (349)
Q Consensus 139 ~~~~C~~C~G~G 150 (349)
-...|..|+-..
T Consensus 69 ~~~~C~~CG~~~ 80 (139)
T 3a43_A 69 AVFKCRNCNYEW 80 (139)
T ss_dssp CEEEETTTCCEE
T ss_pred CcEECCCCCCEE
Confidence 345677775543
No 88
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=25.41 E-value=1.7e+02 Score=23.23 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=36.2
Q ss_pred EEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEE
Q psy4972 268 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGI 312 (349)
Q Consensus 268 ~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l 312 (349)
.-.+.++..+... ....+.|-+|+.+-|.+|.+..+.+|+++..
T Consensus 15 ~~~v~L~~~~r~k-~R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~ 58 (143)
T 1gmu_A 15 TASVTLPIDVRVK-SRVKVTLNDGRDAGLLLPRGLLLRGGDVLSN 58 (143)
T ss_dssp SEEEEECHHHHTC-SEEEEECTTSCEEEEECCSSCCCCTTCEEEC
T ss_pred ceEEEeCHHHHhc-ceEEEECCCCCEEEEECCCCcccCCCCEEEE
Confidence 3567888888844 4678888999999999998888999999865
No 89
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=25.01 E-value=28 Score=36.37 Aligned_cols=33 Identities=24% Similarity=0.661 Sum_probs=20.8
Q ss_pred cCCCCCccceEEEEEEecCccceEeeeeCCCCCCcce
Q psy4972 158 TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE 194 (349)
Q Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 194 (349)
.|+.|.|.|.+....+ +...+..+|+.|+|+-+
T Consensus 640 ~c~~c~g~G~~~~~~~----f~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELL----FLPSVYAPCPVCHGTRY 672 (842)
T ss_dssp BCTTTTTCSEEEETTC----SSSCEEEECTTTTTCCB
T ss_pred ccccccCCCccchhhh----cCCccceecccccCccc
Confidence 4999999997543222 22244567888877654
No 90
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=24.72 E-value=17 Score=35.68 Aligned_cols=25 Identities=24% Similarity=0.654 Sum_probs=15.7
Q ss_pred EEecCccceEeeeeCCCCCCcceEE
Q psy4972 172 RIIGPNMTQQIQARCSDCQGEGEVM 196 (349)
Q Consensus 172 ~~~~~g~~~~~~~~C~~C~G~G~~~ 196 (349)
++..+.+......+||.|+|+|++.
T Consensus 397 kR~r~sL~e~~~~~Cp~C~G~G~v~ 421 (517)
T 2bx2_L 397 QRLSPSLGESSHHVCPRCSGTGTVR 421 (517)
T ss_dssp CCCSCCHHHHHCCCCSSSSSSSCCC
T ss_pred cCcCcChhhhhcCcCCCcCCceeEC
Confidence 3344455444566788888888764
No 91
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=24.62 E-value=33 Score=24.24 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+..|...+.-||+......+.-+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A 63 (83)
T 1aab_A 19 VQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63 (83)
T ss_dssp HHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344566666678886532234566889999999988877665543
No 92
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.33 E-value=91 Score=22.96 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....|..
T Consensus 29 ~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A 71 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT--FGEVSKIVASMWDGLGEEQKQVYKKKT 71 (102)
T ss_dssp HHHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3456666677788864 456677899999999988777666643
No 93
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=23.22 E-value=7.3 Score=38.53 Aligned_cols=66 Identities=23% Similarity=0.480 Sum_probs=37.3
Q ss_pred eccCCCCCCCCCC-----CcccCCCCCccceEEEEE--EecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCcc
Q psy4972 142 ICSTCNGKGSKSG-----ATFTCASCRGCGFKIHHR--IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRK 209 (349)
Q Consensus 142 ~C~~C~G~G~~~~-----~~~~C~~C~G~G~~~~~~--~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g 209 (349)
.|..|++.+.... ....|-.|++.-...... ...+-....-...|..|+..-.. ....|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~--~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEE--PKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSC--CCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcC--cCchhhhhcCCC
Confidence 6999999875431 134799999753211000 00000000114589999976643 367899998653
No 94
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=23.21 E-value=1.3e+02 Score=23.53 Aligned_cols=44 Identities=18% Similarity=0.072 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972 20 EIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGI 68 (349)
Q Consensus 20 ~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 68 (349)
++-+.++.+...+.++.. .+.|..|.+-|. .||.-++.||++|.
T Consensus 81 ~l~~~h~~~l~~~~~~~s---~e~~~~L~~mYv--~D~rF~~~~d~~~~ 124 (143)
T 1ny9_A 81 DAAEDHRQGIARNHYDCG---YEMHTCLGEMYV--SDERFTRNIDAAKP 124 (143)
T ss_dssp HHHHHHHHHHHHHSSCCC---HHHHHHHHHHTT--STHHHHHHHGGGST
T ss_pred HHHHHHHHHHHHhCCCCC---HHHHHHHHHHHh--cCHHHHHhHcccCh
Confidence 344455555444444443 255666666665 78888899998854
No 95
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=23.19 E-value=1.3e+02 Score=20.40 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhh
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYD 64 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD 64 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++ |+.|.
T Consensus 15 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIK--VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCC--HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCc---hHHHH
Confidence 4556777777889875 35667789999999987 55554
No 96
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=22.43 E-value=2.1e+02 Score=22.71 Aligned_cols=45 Identities=7% Similarity=-0.089 Sum_probs=36.5
Q ss_pred EEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEc
Q psy4972 268 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV 313 (349)
Q Consensus 268 ~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~ 313 (349)
.-.+.++..+... ....+.|-+|+.+-|.+|.+..+.+|+++...
T Consensus 20 ~d~v~L~~~~r~k-~R~r~~t~~G~e~~l~L~r~~~L~dGDvL~~d 64 (147)
T 1ear_A 20 VDWLEVEWEDLNK-RILRKETENGTDIAIKLENSGTLRYGDVLYES 64 (147)
T ss_dssp EEEEEECGGGGGC-SEEEEECTTCCEEEEECSSCCCCCTTEEEEEC
T ss_pred ceEEEeCHHHHhc-ceeEEECCCCCEEEEECCCCcccCCCCEEEEC
Confidence 3557888888754 46778889999999999988889999998764
No 97
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.42 E-value=1.1e+02 Score=21.50 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (86)
T 2lef_A 14 MKEMRANVVAESTLKE--SAAINQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHHHSSCCC--HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456666777788864 45667789999999998777665554
No 98
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=22.34 E-value=1e+02 Score=21.08 Aligned_cols=42 Identities=12% Similarity=0.306 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.+. .+.-+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN--SEISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHHCSCCSS--SHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH--HHHHHHHHhHHHhCCHHHHHHHHHH
Confidence 45566667778898653 3456789999999997777665554
No 99
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=22.28 E-value=1.2e+02 Score=20.82 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH--NAEISKRLGKRWKLLKDSDKIPFIQE 55 (79)
T ss_dssp HHHHHHHHHTTSTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566677777788765 44667788999999997777665554
No 100
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=22.07 E-value=1.1e+02 Score=21.35 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.+. .+.-+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN--RGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCT--THHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 45667777778898653 3556789999999998777665554
No 101
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=21.63 E-value=56 Score=22.02 Aligned_cols=24 Identities=21% Similarity=0.667 Sum_probs=16.2
Q ss_pred eEeccCCCCCCCCCCCcccCCCCC
Q psy4972 140 SVICSTCNGKGSKSGATFTCASCR 163 (349)
Q Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~ 163 (349)
..+|.-|.=+-.+.+.-..|..|+
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk 32 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQ 32 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTC
T ss_pred cchhhhhccceeccCCCccccccC
Confidence 346888887777776656666654
No 102
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=21.53 E-value=1e+02 Score=26.65 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
-+.+|.-.++-||+.. ..+..+.+.+.|..|++.++...+|.+
T Consensus 53 ~~e~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~A 95 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDAY 95 (238)
T ss_dssp HHHHHHHHHHHSTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666677788876 457778889999999988877766643
No 103
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=21.44 E-value=1.3e+02 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 21 IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 21 Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
-.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 40 F~~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 40 WAQAARRKLADQYPHLH--NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp HHHHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35667777778888865 34667889999999998877766654
No 104
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=21.08 E-value=1.1e+02 Score=21.23 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.++....+..
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~A 56 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH--NSEISKRLGAEWKLLSETEKRPFIDEA 56 (80)
T ss_dssp HHHHHHHHHTTSTTSC--HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666667788754 446678899999999988777666543
No 105
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=20.98 E-value=1.1e+02 Score=25.93 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 66 (349)
-+.+|...+.-||+.. ..+..+.+.+.|..|++.++...+|..
T Consensus 21 ~~~~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~A 63 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDAY 63 (214)
T ss_dssp HHHHHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC--HHHHHHHHHHHHHccCHHhhhHHHHHH
Confidence 4556666777889876 557778889999999988877666543
No 106
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=20.65 E-value=1.3e+02 Score=21.19 Aligned_cols=42 Identities=12% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (85)
T 1j46_A 16 SRDQRRKMALENPRMR--NSEISKQLGYQWKMLTEAEKWPFFQE 57 (85)
T ss_dssp HHHHHHHHHHHSTTSC--HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4556666777788864 44667789999999997777665554
No 107
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=20.02 E-value=1.3e+02 Score=21.27 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972 22 KKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDR 65 (349)
Q Consensus 22 k~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 65 (349)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~ 70 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD--NRAISVILGDRWKKMKNEERRMYTLE 70 (87)
T ss_dssp HHHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4556677777888864 44566789999999998777665554
Done!