RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4972
(349 letters)
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 342 bits (878), Expect = e-116
Identities = 166/346 (47%), Positives = 218/346 (63%), Gaps = 20/346 (5%)
Query: 5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDK--NPEAGDKFKEISFAYEVLSDEKKRAT 62
KLYEVL +SK + EIKKAYRKLA + HPDK +PE KFKEIS AYEVLSD +KR
Sbjct: 29 KLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE---KFKEISRAYEVLSDPEKRKI 85
Query: 63 YDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKV 122
YD YG +G++ G AD SD L +FGG G G RGED V LKV
Sbjct: 86 YDEYGEEGLE--GGEQPADASD-LFDLIFGG----------GRKPGGKKRGEDIVSHLKV 132
Query: 123 SLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQI 182
+LE +YNG KL + K VIC+ C G G A C C G G ++ R +G M Q
Sbjct: 133 TLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGS-MIHQT 191
Query: 183 QARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPD 242
Q+ C+ C G+G+++ E +C +C+G+ +K+LEVN+DKG+ KI F GE D++P+
Sbjct: 192 QSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPN 251
Query: 243 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGE 302
+ PG+V+ +L +KPHD F+R+G +L T+ I+L EAL GF I HLD R+LL+ PPGE
Sbjct: 252 EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGE 311
Query: 303 VIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES-YFNNDAK 347
V+KP DIK I EGMP YK+P++KG LY+ F+V FP F N+ K
Sbjct: 312 VVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEK 357
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 315 bits (809), Expect = e-106
Identities = 134/352 (38%), Positives = 193/352 (54%), Gaps = 27/352 (7%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
MA YE+LGVSK AS++EIKKAYRKLAK++HPD+NP EA +KFKEI+ AYEVLSD
Sbjct: 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60
Query: 58 KKRATYDRYGIQGIKEKAGGG------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPH 111
+KRA YD++G G K GG G DF D+ FG GG G RP
Sbjct: 61 EKRAAYDQFGHAGFKAGGFGGFGFGGFGGDF-GDIFEDFFG------GGGGGRRRPNRPR 113
Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCGFKIH 170
RG D + L+++LE+ G ++++T+SV CSTC+G G+K G TC +C G G
Sbjct: 114 RGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRT 173
Query: 171 HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
+ G Q C C G G+++ KD CG C G+ + KK + VN+ G+ + +
Sbjct: 174 VQRTG---FFSFQQTCPTCNGTGKII--KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR 228
Query: 231 IYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL 289
I GEG+ GD+ + + KPH F+R G +L I+ TEA G + L
Sbjct: 229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTL 288
Query: 290 DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESY 341
D R + + P G + ++ + G+GMP ++ +G LY++ V+ P++
Sbjct: 289 DGR-VKLKIPAGT--QTGEVFRLRGKGMPKLRSGG-RGDLYVRVKVETPKNL 336
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 276 bits (708), Expect = 3e-91
Identities = 124/352 (35%), Positives = 188/352 (53%), Gaps = 18/352 (5%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
YE+LGVSK AS++EIKKAYRKLAK++HPD+N EA +KFKEI+ AYEVLSD +KRA YD
Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62
Query: 65 RYGIQGIKEKAGGGGADFSDDLISQ------LFGGRLFGMGGPFGGHSRGRPHRGEDTVH 118
++G G GGGG F+ I +FG FG GG G R P RGED +
Sbjct: 63 QFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGD-FFGGGGGSGRRRRSGPRRGEDLRY 121
Query: 119 PLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPN 177
L+++ E+ G ++++ + C TC+G G+K G TC +C G G + + P
Sbjct: 122 DLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQ-VRRQQGTPF 180
Query: 178 MTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEG 237
Q Q C C GEG+++ K+ C +C G+ + +K + V + G+ Q++ G+G
Sbjct: 181 GFFQQQQTCPTCGGEGKII--KEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKG 238
Query: 238 DQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLI 296
+ + GD+ +V+ KPH F+R G +L I+ T+A+ G + LD L
Sbjct: 239 NAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKL- 297
Query: 297 THPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
P G + + + G+G+P +G L + V+ P++ +L
Sbjct: 298 KIPAG--TQSGTVFRLKGKGVP-RLRGNGRGDLLVTVKVETPKNLSKEQKEL 346
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 235 bits (603), Expect = 5e-75
Identities = 112/294 (38%), Positives = 158/294 (53%), Gaps = 35/294 (11%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
MA YEVLGVS++AS+ EIKKAYRKLA ++HPD+NP EA +KFKEI AYEVLSD
Sbjct: 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60
Query: 58 KKRATYDRYGIQGIKEKAGGGG----ADFSD---DLISQLFGGRLFGMGGPFGGHSRGRP 110
+KRA YD+YG ++ GGGG F D D+ +FGG G R R
Sbjct: 61 QKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGG--------RGGGRQRA 112
Query: 111 HRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKI 169
RG D + ++++LE+ G T ++++ V C TC+G G+K G + TC +C G G ++
Sbjct: 113 RRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAG-QV 171
Query: 170 HHRIIGPNMTQQ----IQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGM 225
QQ +Q C C G G+++ KD C C G+ + +K L V + G+
Sbjct: 172 R--------MQQGFFTVQQTCPTCHGRGKII--KDPCKKCHGQGRVEKEKTLSVKIPAGV 221
Query: 226 KEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEA 278
+I GEG+ P GD+ + + K H F+R G +L I+ T A
Sbjct: 222 DTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTA 275
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 216 bits (552), Expect = 3e-67
Identities = 141/370 (38%), Positives = 199/370 (53%), Gaps = 38/370 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
YEVLGVS+SA EIKKAYRKLA ++HPDKNP EA + FKE++ AYEVLS++ KR Y
Sbjct: 6 YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65
Query: 64 DRYGIQGIKEKA--------GGGGADFSD--DLISQLF-GGRLFGMGGPF-------GGH 105
D++G G+ A GGGG DF+D + +F GG G G PF GG
Sbjct: 66 DQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGG 125
Query: 106 SRGRPH---RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASC 162
R R G D LK++LE++ G L++ K V C CNG GSK+GAT TC +C
Sbjct: 126 RRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTC 185
Query: 163 RGCGFKIHHRIIGPNMTQQIQ--ARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN 220
G G R M Q C C GEG V+ KDRC +C G + ++V
Sbjct: 186 HGSG---EVRQASKTMFGQFVNITACPTCGGEGRVV--KDRCPACYGEGIKQGEVTVKVT 240
Query: 221 VDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEAL 279
V G+++ + RG+G+ P PGD+I+V+E+KPH+ F R G +++ ++ + +
Sbjct: 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLV 300
Query: 280 CGFTKV-IKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
G TKV + LD L T P G +PE + I G+G+ + +G Y++ +V P
Sbjct: 301 LG-TKVEVPTLDGAVKL-TIPAG--TQPETMLRIPGKGIGHLRGS-GRGDQYVRVNVFVP 355
Query: 339 ESYFNNDAKL 348
+ + D +L
Sbjct: 356 KEVSHQDKEL 365
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 213 bits (544), Expect = 2e-66
Identities = 119/354 (33%), Positives = 181/354 (51%), Gaps = 36/354 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
YE+LGVS++A+ +EIKKAYR+LA+++HPD KNPEA +KFKEI+ AY+VLSD +KR YD
Sbjct: 6 YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65
Query: 65 RYGIQGIKEKAGGGGADFS----------DDLISQLFGGRLFGMGGPFGGH--------S 106
++G +G +D++ +F +FG G FG +
Sbjct: 66 QFGHAAF-SGSGQQQQGQEGFSDFGGGNIEDILEDVF--DIFGFGDIFGRRRATRERRKT 122
Query: 107 RGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGC 165
RP +GED +++SLE+ Y G T L++ + V C C G G G+ C +C G
Sbjct: 123 YQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGS 182
Query: 166 GFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGM 225
G I +I C C GEG + ++ C C GR + K+ ++V + G+
Sbjct: 183 GE-----IYQRGGFFRISQTCPTCGGEGVL---REPCSKCNGRGLVIKKETIKVRIPPGV 234
Query: 226 KEMQKIYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTK 284
K+ G+G + PGD+ I+++ KPH F+R+G NL IT+ EA+ G
Sbjct: 235 DNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTEL 294
Query: 285 VIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
+ LD ++ + PPG K D + G+GMP K G L ++ + P
Sbjct: 295 EVPLLDGKKEKVKIPPG--TKEGDKIRVPGKGMPRLKGS-GYGDLVVRVHIDVP 345
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 203 bits (519), Expect = 1e-62
Identities = 113/340 (33%), Positives = 174/340 (51%), Gaps = 21/340 (6%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
YE+LGV++ AS++EIKK+YRKLA ++HPD+NP EA + FKE + AYEVLSD KKR Y
Sbjct: 7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66
Query: 64 DRYGIQGIKEKAGGGGADFSDDLISQLFG---GRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
D+YG +G+ G + F DD+ S FG FG GG G SR G D + L
Sbjct: 67 DQYGHEGLSGTGFSGFSGF-DDIFSS-FGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDL 124
Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKIHHRIIGPNMT 179
+ + G ++++ K C C+G G + G + TC C G G ++
Sbjct: 125 TLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSG-----QVTQSQGF 179
Query: 180 QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEG-D 238
I+ C C+G G+V+ C +C G+ + V K ++V + G+ ++ RGEG
Sbjct: 180 FSIRTTCPRCRGMGKVI--VSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEA 237
Query: 239 QQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITH 298
PGD+ + L +PH+ F+R G ++ I+ +A G + L+ + L
Sbjct: 238 GVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGEREL-KI 296
Query: 299 PPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
P G +P DI G+G+P + +G I+ +V+ P
Sbjct: 297 PKG--TQPGDIFRFKGKGIPSLRG-GGRGDQIIEVEVKVP 333
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 202 bits (516), Expect = 3e-62
Identities = 131/352 (37%), Positives = 178/352 (50%), Gaps = 29/352 (8%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
M+ YEVLGVS+ AS+ EIKKAYRKLA ++HPD+NP EA KFKE + AYEVL D
Sbjct: 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60
Query: 58 KKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFG---GRLFGMGGPFGGHSRG-RPHRG 113
+KRA YDR+G G+ G GG ++D+ S F G LFG G GG RG RP G
Sbjct: 61 EKRARYDRFGHAGVNGNGGFGGFSSAEDIFSH-FSDIFGDLFGFSG--GGSRRGPRPQAG 117
Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHR 172
D + L VS G L++ K+V C C G G+ G + TC C G G +
Sbjct: 118 SDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSG-----Q 172
Query: 173 IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
+ QI C C+GEG V+ C C G + + L+V + G+ ++
Sbjct: 173 VRQSQGFFQIAVPCPVCRGEGRVI--THPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230
Query: 233 FRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDD 291
RGEG+ P GD+ +V+ + FQRQG +LV T+ I+ +A G + LDD
Sbjct: 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD 290
Query: 292 R-QLLITH--PPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
L I GEV + + G+G+P Y +KG L ++ V P
Sbjct: 291 PVTLDIPKGTQSGEVFR------LRGKGLP-YLGSSQKGDLLVEVSVVTPTK 335
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 200 bits (510), Expect = 3e-61
Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 33/327 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYD 64
Y +LGVS++ASD EIK+AYRKLA+E HPD NP EA +KFKEIS AYEVLSD +KR D
Sbjct: 6 YGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65
Query: 65 RYGIQGIKEKAGGGGADFSD------DLISQLFGGRLFGMGGPFGGHSRG---RPHRGED 115
G E AGGGG F D+ FGG G SRG R G D
Sbjct: 66 LGG--DPLESAGGGGGGFGGGFGGLGDVFEAFFGG---------GAASRGPRGRVRPGSD 114
Query: 116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCG--FKIHHR 172
++ +++ LE+ G T ++ + +V+C C+GKG+ + TC +C G G +
Sbjct: 115 SLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRS 174
Query: 173 IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
+G MT + C C+G GEV+ D C CAG + ++ + V + G+ + +I
Sbjct: 175 FLGQVMTSR---PCPTCRGVGEVI--PDPCHECAGDGRVRARREITVKIPAGVGDGMRIR 229
Query: 233 FRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDD 291
+G+ P P GD+ + + ++PHD F R G +L T ++ + +A G T ++ + D
Sbjct: 230 LAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILD 289
Query: 292 RQLLITHPPGEVIKPEDIKGIVGEGMP 318
IT PPG +P + + G GMP
Sbjct: 290 GPSEITIPPG--TQPGSVITLRGRGMP 314
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 195 bits (497), Expect = 2e-59
Identities = 119/349 (34%), Positives = 178/349 (51%), Gaps = 24/349 (6%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEK 58
AD YE+LGVS+ A E+K+AYR+LA+++HPD N E G D+FKEI+ AYEVLSD +
Sbjct: 2 AAD--YYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPE 59
Query: 59 KRATYDRYGIQGIKEKAGGGGADFSD-----DLISQLFGGRLFGMGGPFGGHSRGRPHRG 113
RA YD++G G+ G D D D+ F G G GG G R P RG
Sbjct: 60 TRARYDQFGEAGV--SGAAGFPDMGDMGGFADIFETFFSG-FGGAGGQGGRRRRRGPQRG 116
Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG-ATFTCASCRGCGFKIHHR 172
+D + LK+ + G ++++ C TC G G+K G TC++C G G ++
Sbjct: 117 DDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAG-QVRRA 175
Query: 173 IIGP--NMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
P + TQ + C C G G+V+ +D C +C G+ V K L++N+ G+ +
Sbjct: 176 TRTPFGSFTQ--VSECPTCNGTGQVI--EDPCDACGGQGVKQVTKKLKINIPAGVDTGTR 231
Query: 231 IYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL 289
+ GEGD PGD+ + L K F+R GIN+++ I+ +A+ G T + +
Sbjct: 232 LRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTV 291
Query: 290 DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
D L T P G +P + + +G+P NP +G I V+ P
Sbjct: 292 DGPVEL-TIPAG--TQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIP 337
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 195 bits (497), Expect = 3e-59
Identities = 122/360 (33%), Positives = 194/360 (53%), Gaps = 32/360 (8%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
YEVLGVSK+A+ EIKKAYRK A ++HPDKNP EA +KFKE + AY+VLSD
Sbjct: 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61
Query: 58 KKRATYDRYGIQGIKEKAGGGGAD---FS-DDLISQ---LFGGRLFGMGGPFG---GHSR 107
KR+ YD++G G+ AGGGG S +D+ S +FGG G GG G G S+
Sbjct: 62 DKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQ 121
Query: 108 GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSK-SGATFTCASCRGCG 166
R RG D +K++L+++ G K ++ K V CS C+G G++ + + TC +C+G G
Sbjct: 122 QRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSG 181
Query: 167 --FKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKG 224
++ + I+G T Q Q+ C C GEG+++ K +C C G + ++V+ V + G
Sbjct: 182 SVTRVQNTILG---TMQTQSTCPTCNGEGKII--KKKCKKCGGEGIVYGEEVITVKIPAG 236
Query: 225 MKEMQKIYFRGEGDQQPDQE-PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFT 283
+ E ++ G+G+ GD+++V+E++PH R +L+ +++ A G
Sbjct: 237 VAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGA 296
Query: 284 KVIKHLDDRQLLITHP---PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
+ +D + + PG+V++ + +G+P N Y G L + V PE+
Sbjct: 297 VEVPTIDGKAKVKIEAGTQPGKVLR------LRNKGLPSV-NGYGTGDLLVNVSVYIPET 349
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 194 bits (495), Expect = 5e-59
Identities = 124/354 (35%), Positives = 194/354 (54%), Gaps = 29/354 (8%)
Query: 1 MADTK-LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDE 57
MA+ + YEVLGV ++A +EIKKAYRKLA+++HPD + A +KFKEIS AY VLSD+
Sbjct: 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD 60
Query: 58 KKRATYDRYGIQGIKEKAGGGGADFSDDL----ISQLFG---GRLFGMGGPFGGHSRGRP 110
+KR YD++G G+ G D +++ I Q FG G +F M G FGG SR P
Sbjct: 61 EKRQRYDQFGHAGMD---GFSQEDIFNNINFEDIFQGFGFGIGNIFDMFG-FGGGSRHGP 116
Query: 111 HRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCG--F 167
RG D ++++LE+ +G +++ + C CNG ++ G+ TC +C G G
Sbjct: 117 QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVK 176
Query: 168 KIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKE 227
++ + I+G M C DCQGEG+++ + C +C G+ + K + V + G++
Sbjct: 177 QVRNTILGQMMN---VTTCPDCQGEGKIV--EKPCSNCHGKGVVRETKTISVKIPAGVET 231
Query: 228 MQKIYFRGEGDQQPDQ--EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKV 285
++ GEG+ D+ EPGD+ +V++ KPH F+R+G NL + I+ +A G T
Sbjct: 232 GSRLRVSGEGEMG-DRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVD 290
Query: 286 IKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
+ + D + + P G + + G GMP + KG LY+K V P+
Sbjct: 291 VPTI-DGPVELKIPAG--TQSGTTFRLKGHGMPSLRWS-GKGNLYVKVKVVVPK 340
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 191 bits (487), Expect = 6e-58
Identities = 111/292 (38%), Positives = 154/292 (52%), Gaps = 22/292 (7%)
Query: 1 MADTK-LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDE 57
MA T+ YE+LG+SK AS ++IKKAYRKLA ++HPDKN E +KFKEIS AY VLSD
Sbjct: 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60
Query: 58 KKRATYDRYGIQGIKEKAGG----GGADFSD--DLISQLFGGRLFGMGGPFGGHSRGRPH 111
+KRA YDR+G GI + GADF D+ FGG G G G P
Sbjct: 61 EKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGG--GRRGRMG------PR 112
Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIH 170
RG D + L ++LE+ G + + ++ CSTC+G G+K G + C +C G G ++
Sbjct: 113 RGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTG-QVT 171
Query: 171 HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
P CS C G G+V+ C C+G + + + VNV G +
Sbjct: 172 TTRSTPLGQFVTTTTCSTCHGRGQVIESP--CPVCSGTGKVRKTRKITVNVPAGADSGLR 229
Query: 231 IYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
+ GEG+ P GD+ IVL K HD F+R G ++++ I+ T+A G
Sbjct: 230 LKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALG 281
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 190 bits (483), Expect = 2e-57
Identities = 123/354 (34%), Positives = 191/354 (53%), Gaps = 28/354 (7%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDE 57
M++ Y++LGVSKSA+D+EIK AYRKLA ++HPDKN E+ +KFKE + AYE+L D
Sbjct: 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60
Query: 58 KKRATYDRYGIQGIKEKAGGGGA----DFSD------DLISQLFGGRLFGMGGPFGGHSR 107
KKR YD++G G+ AGG G DFSD D+ FGG G GG GG R
Sbjct: 61 KKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGG---GRGGGSGGGRR 117
Query: 108 GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCG 166
P RG D + L+VSLED G+ K+++ + C CNG G+ G++ TC C G G
Sbjct: 118 SGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSG 177
Query: 167 FKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK 226
+I + C C+G+G V++ + C +C G+ ++ + + + G++
Sbjct: 178 -----QIRRTQGFFSVATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVE 230
Query: 227 EMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKV 285
++ GEG+ P+ P GD+ +V K H+ F+RQG +L+ I+L +A+ G
Sbjct: 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIE 290
Query: 286 IKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
+ +D ++ + P G + + + G GMP Y Y KG ++ ++ P+
Sbjct: 291 VPTIDGKKAKMKIPEG--TESGQVFRLKGHGMP-YLGAYGKGDQHVIVKIEIPK 341
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 189 bits (481), Expect = 5e-57
Identities = 114/300 (38%), Positives = 163/300 (54%), Gaps = 36/300 (12%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEK 58
MA YEVLGVSKSAS EIKKAYRKL+K++HPD N E G +KFKEIS AYEVLSD++
Sbjct: 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQ 60
Query: 59 KRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGP--------FGGHSRGR- 109
KRA YD++G G + GGGG FGG FG G FGG R R
Sbjct: 61 KRAQYDQFGHAGPNQGFGGGG-----------FGGGDFGGGFGFEDIFSSFFGGGGRRRD 109
Query: 110 ---PHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGC 165
P +G D + + ++ E+ GK ++++ K C TC+G G+K G + TC+ C G
Sbjct: 110 PNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGS 169
Query: 166 GFKIH---HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222
G ++ + G + +Q C C G G+ + EK C +C G+ + +K + V +
Sbjct: 170 G-QVSVEQNTPFGRVVNRQT---CPHCNGTGQEIKEK--CPTCHGKGKVRKRKKINVKIP 223
Query: 223 KGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
G+ Q+I GEG+ + P GD+ +V +PH+ F+R G ++ +T +A G
Sbjct: 224 AGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALG 283
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 189 bits (481), Expect = 7e-57
Identities = 103/298 (34%), Positives = 149/298 (50%), Gaps = 29/298 (9%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEK 58
M +T+ Y+ LGVSK AS EIKKAYRKL+K++HPD N E G +K+KE+ AYE LSD +
Sbjct: 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQ 60
Query: 59 KRATYDRYGIQGIKEKAGGGGADFS-----------DDLISQLFGGRLFGMGGPFGGHSR 107
KRA YD+YG G GGG F +D+ S FGG GG R
Sbjct: 61 KRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFFGG---------GGARR 111
Query: 108 --GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRG 164
P +G+D + + + E+ GK ++ + C TCNG G+K G + TC C G
Sbjct: 112 NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHG 171
Query: 165 CGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKG 224
G I P + Q C C G G+ + K+ C +C G + V + G
Sbjct: 172 SGV-ITVDTQTPLGMMRRQVTCDVCHGTGKEI--KEPCQTCHGTGHEKQAHTVSVKIPAG 228
Query: 225 MKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
++ Q+I +G+G+ + P GD+ +V +P +F+R G + T I+ +A G
Sbjct: 229 VETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALG 286
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 182 bits (463), Expect = 2e-54
Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 37/360 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRATY 63
YE+LG+SK AS EIKKAYRK+A ++HPDK N EA FKE + AYEVL D+ KRA Y
Sbjct: 6 YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65
Query: 64 DRYGIQGIKEKAG-----GGGADFSD------DLISQLFGGRLFGMGGPFGGHSRGRPH- 111
DR+G + G GG + FSD D+ F G G + R H
Sbjct: 66 DRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGN--------RGQDKNRKHE 117
Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFT-CASCRGCGFKIH 170
+G+D + +++SLED Y G + +T++++C +C GK S+ G + + C C G G
Sbjct: 118 KGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG---- 173
Query: 171 HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
R++ ++ C C G G++++ + C SC G+ +L K+ +E+ + G+ + Q+
Sbjct: 174 -RVMQGGGFFRVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230
Query: 231 IYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL 289
I RG+G PD Q+ GD+ I + KPH F+R G +L T I+ T+A G I+ +
Sbjct: 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTI 290
Query: 290 DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEK-GTLYIKFDVQFPESYFNNDAKL 348
+++ I P G + ++ I EGMPI EK G L + ++ P++ +N KL
Sbjct: 291 ASKKIKIKIPKG--TENDEQIIIKNEGMPILHT--EKFGNLILIIKIKTPKNLNSNAIKL 346
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 181 bits (460), Expect = 5e-54
Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 25/343 (7%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEKKRATYD 64
YE+LGVS++AS EIK AYRKLA ++HPD+N E G +KF +I+ AY VLSD +KRA YD
Sbjct: 5 YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64
Query: 65 RYGIQGIKEKAGG---GGADFSD-DLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
R+G GG GG F D+ QLFGG G GG R P RG+D
Sbjct: 65 RFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFGG-----AGFGGGRGRRGPARGDDLETEA 119
Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT--FTCASCRGCG-FKIHHR-IIGP 176
+++LE G+ ++++ + C C+G ++ G TC +CRG G + R I G
Sbjct: 120 RITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGV 179
Query: 177 NMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE 236
TQQ C C+GEG+++ D C C GR + ++V + +G+ E +I G
Sbjct: 180 VETQQP---CPTCRGEGQII--TDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGM 234
Query: 237 GDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLI 296
G++ P GD+ + +E +PH +R+ +L+ I +A G + LD Q +I
Sbjct: 235 GNEGPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VI 292
Query: 297 THPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
PG + D+ + G+GMP + G L +++++ P+
Sbjct: 293 EVKPG--TQHGDLHRLRGQGMPRLQG-AGTGDLIVEYEIAVPK 332
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 181 bits (460), Expect = 7e-54
Identities = 122/360 (33%), Positives = 186/360 (51%), Gaps = 32/360 (8%)
Query: 1 MADTK-LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSD 56
MA K YE+LGV ++A+++EIKKAYR+LAK++HPD NP EA KFKEI+ AYE+LSD
Sbjct: 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60
Query: 57 EKKRATYDRYGIQGIKEKA-----------GGGGADFSDDLISQLFGGRLFGMGGPFGGH 105
+KRA YD++G GGGG DF +F +FG FG
Sbjct: 61 PQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFED-IFGDF--FGTG 117
Query: 106 SRGR---PHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCAS 161
R P +G D + L+++ E+ G ++++ + C C G G+K G+ TC
Sbjct: 118 RRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPV 177
Query: 162 CRGCGFKIHHRIIGPNMTQQIQAR-CSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN 220
C G G ++ R P + + R C C GEG+++ D C C G + ++ ++VN
Sbjct: 178 CHGTG-QVRTRQNTP-FGRIVNIRTCDRCHGEGKII--TDPCNKCGGTGRIRRRRKIKVN 233
Query: 221 VDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEAL 279
+ G+ + Q I RGEG+ P GD+ IV++ KPH F+R+G N+ IT T+A
Sbjct: 234 IPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAA 293
Query: 280 CGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
G I LD + + T P G + + G+G+P + +G +K ++ P+
Sbjct: 294 LGGEIEIPTLDGK-VKFTIPEG--TQTGTKFRLRGKGIP-HLRGRGRGDQIVKVYIEVPK 349
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 175 bits (444), Expect = 2e-51
Identities = 122/359 (33%), Positives = 176/359 (49%), Gaps = 38/359 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
Y +LGVSK+AS +EIKKAYRKLA ++HPDKNP EA +FKE+S AYEVLSD +KR +Y
Sbjct: 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63
Query: 64 DRYGIQGIKEKAGG-GGADFS--DDLISQL---FGGR----------LF-GMGGPFGGHS 106
DRYG G AGG GGA +D + FGG LF G+G FG
Sbjct: 64 DRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRG 123
Query: 107 RGRPHR--GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCR 163
R VH + +S E+ G +L ++ C C+G G+ S C C+
Sbjct: 124 GPAGARQGASKKVH-ITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCK 182
Query: 164 GCGFKIHHR-IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222
G G + R T C +C GEG V+ D C C G+ + K+ + V++
Sbjct: 183 GSGQVVQSRGFFSMAST------CPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIP 234
Query: 223 KGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
G+ ++ G GD + P GD+ + ++ +PH F+R+G +L+ I +A G
Sbjct: 235 AGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALG 294
Query: 282 FTKVIKHL-DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
K I L + +T P G I+ I + G+G P +G L ++ V+ P+
Sbjct: 295 MKKEIPTLLKEGTCRLTIPEG--IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQ 350
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 174 bits (442), Expect = 3e-51
Identities = 112/370 (30%), Positives = 177/370 (47%), Gaps = 36/370 (9%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSD 56
YE+LGVS++A+ +EIK+AY++L KE+HPD++PE A KFKEI AYEVLSD
Sbjct: 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD 60
Query: 57 EKKRATYDRYGIQG---IKEKAGGGGADFSD-----------DLISQLFGGRLFGMGGPF 102
+KRA YDR+G G ++ GG F D D+ FG R
Sbjct: 61 PQKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGER------RT 114
Query: 103 GGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCAS 161
R RGED + ++V+L DL NG ++ + C C G G + G+ + TC
Sbjct: 115 QEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPK 174
Query: 162 CRGCGFKIHHR--IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEV 219
C G G R G ++++ C C G G++ E C C G + + V
Sbjct: 175 CHGTGRIREERRSFFGVFVSERT---CERCGGTGKIPGEY--CHECGGSGRIRRRVRTTV 229
Query: 220 NVDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEA 278
+ G+++ + G G+ P GD+ +++ +P RF+R G +L+ TI +A
Sbjct: 230 KIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQA 289
Query: 279 LCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
+ G T + + ++ PPG +PE + + G+G+P + +G L + V+ P
Sbjct: 290 ILGTTVEVPLPEGGTTMLKIPPG--TQPETVFRLKGKGLPNMRYG-RRGDLIVNVHVEIP 346
Query: 339 ESYFNNDAKL 348
+ + KL
Sbjct: 347 KRLSREERKL 356
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 173 bits (441), Expect = 5e-51
Identities = 116/319 (36%), Positives = 162/319 (50%), Gaps = 32/319 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEKKRATY 63
Y+VLGV K A++ EIKKAYRKLA+E+HPD N +A ++FKEIS AY+VLSDEKKR Y
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71
Query: 64 DR----YGIQGIKEKAGGG-GADFSDDLISQLFGGRLFG-------------MGGPFGGH 105
D +G G + GGG G F+ DL LFGG G GG F
Sbjct: 72 DEARSLFGNGGFRPGPGGGGGGGFNFDL-GDLFGGGAQGGGGAGGGGGLGDVFGGLFNRG 130
Query: 106 SR-GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCR 163
R +P RG D + +S + +G T L+LT C C+G G+K+G T C +C
Sbjct: 131 GRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCS 190
Query: 164 GCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDK 223
G G ++ G ++++ C DC+G G + + D C C G + ++V +
Sbjct: 191 GTG-QVSRNSGGFSLSEP----CPDCKGRGLIAD--DPCLVCKGSGRAKSSRTMQVRIPA 243
Query: 224 GMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGF 282
G+ + Q+I RG+G P GD+ +V+ PH F R G NL T +T EA G
Sbjct: 244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGA 303
Query: 283 TKVIKHLDDRQLLITHPPG 301
+ L + + PPG
Sbjct: 304 EVRVPTLGGPPVTVKLPPG 322
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 170 bits (432), Expect = 7e-50
Identities = 119/354 (33%), Positives = 180/354 (50%), Gaps = 40/354 (11%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRAT 62
Y++LGV ++AS ++IKKA+R+LAK++HPD +P EA +KFKEIS AYEVLSD +KR
Sbjct: 6 YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65
Query: 63 YDRYGIQGIKEKAGGGGADFS----------DDLISQLFGGRLFGMGGPFGGHSRGRPHR 112
YD+ G G GG++F+ +D+ +Q+FGG FG F G + R
Sbjct: 66 YDQTGTVDF----GAGGSNFNWDNFTHFSDINDIFNQIFGGN-FG-SDFFSGFGNQQSTR 119
Query: 113 GE--DTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIH 170
D L +SLED Y G +++ ++ +C C+G G+K+G TC +C G G
Sbjct: 120 NIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTG---Q 176
Query: 171 HRII-GPNMTQQIQ-ARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEM 228
RI+ G + + C C G G + EK C C G T+ V + + V + KG +
Sbjct: 177 QRIVRGQGFFRMVTVTTCRTCGGRGRIPEEK--CPRCNGTGTVVVNEDISVKIPKGATDN 234
Query: 229 QKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKH 288
++ +G+G Q GD+ +VL QR +L + I +A G IK
Sbjct: 235 LRLRVKGKG-QSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKL 293
Query: 289 LDDRQLLIT---HPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
++ L PGEV+K I G GMP + N + G L ++ +V+ P+
Sbjct: 294 FREKYNLKIPEGTQPGEVLK------IKGAGMP-HLNGHGSGDLLVRINVEVPK 340
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 170 bits (432), Expect = 9e-50
Identities = 120/350 (34%), Positives = 181/350 (51%), Gaps = 17/350 (4%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
MA YEVLG+ K ASD EIKKA+RKLA ++HPDKN EA +KFKEI+ AY+VLSD
Sbjct: 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60
Query: 58 KKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFG-GRLFGM--GGPFGGHSRGR--PHR 112
+K+A YD++G G G F S + G G +F GG FG SR R P R
Sbjct: 61 QKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQR 120
Query: 113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKIHH 171
G D + + ++ E+ G ++ +T++ C TCNG G+K G + TC C G G +I
Sbjct: 121 GADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTG-QIRV 179
Query: 172 RIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI 231
+ P + C C G G+V+ +D C C G+ + + ++VNV G+ I
Sbjct: 180 QRNTPLGSFVSTTTCDKCGGSGKVI--EDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI 237
Query: 232 YFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD 290
RG+G+ + P GD+ I + PH F+R+G ++ + I+ +A G + +D
Sbjct: 238 PLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297
Query: 291 DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
++ P G +P + + G+G+P N +G Y+ V P+
Sbjct: 298 G-EVKYEVPAG--TQPGTVFRLKGKGVP-RVNSTGRGNQYVTVIVDIPKK 343
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 169 bits (429), Expect = 3e-49
Identities = 102/325 (31%), Positives = 144/325 (44%), Gaps = 45/325 (13%)
Query: 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEK 58
+ Y+ LGVS AS +EIKKAYRKLA+E HPD NP A ++FK +S A++VLSD
Sbjct: 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPA 66
Query: 59 KRATYDRY------------------GIQGIKEKAGGGGADFSDDL----------ISQL 90
KR YD G G G + +D I L
Sbjct: 67 KRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDL 126
Query: 91 FGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG 150
FGG LF GG G RP RG D + + G T L+LT C+TC+G G
Sbjct: 127 FGG-LFNRGG--GSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSG 183
Query: 151 SKSG-ATFTCASCRGCGFKIHHRIIGPNM-TQQIQARCSDCQGEGEVMNEKDRCGSCAGR 208
++ G + C +C G G I N C+DC+G G ++ D C C G
Sbjct: 184 ARPGTSPKVCPTCNGSGV------ISRNQGAFGFSEPCTDCRGTGSIIE--DPCEECKGT 235
Query: 209 KTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINL 267
+ + + V + G+++ Q+I G+G+ P GD+ + + +P F R G +L
Sbjct: 236 GVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDL 295
Query: 268 VTTETITLTEALCGFTKVIKHLDDR 292
T ++ TE G T + LD
Sbjct: 296 TVTVPVSFTELALGSTLSVPTLDGP 320
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 159 bits (403), Expect = 1e-45
Identities = 111/370 (30%), Positives = 182/370 (49%), Gaps = 38/370 (10%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEK 58
M YEVLGVSK+AS+QEI++AYRKLAK++HPD K+P+A DK EI+ A +VL D+
Sbjct: 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD 60
Query: 59 KRATYDRYGIQGIKEKAGGGG--ADFSD--------------DLISQLFGGRLFGMGGPF 102
KR YD++G +G DF D ++ S FG
Sbjct: 61 KRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGS--------- 111
Query: 103 GGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFT-CAS 161
R +G+ + ++ ++L G ++L CS C G G++S + C +
Sbjct: 112 NKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNN 171
Query: 162 CRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNV 221
C G G + + +G QQ A+C+ C G G+++ K++C +C G+ +K +EVN+
Sbjct: 172 CHGTGEVLVQKNMGFFQFQQ-SAKCNVCNGAGKII--KNKCKNCKGKGKYLERKKIEVNI 228
Query: 222 DKGMKEMQKIYFRGEGDQQPDQE-PGDVIIVLEQKPHDRFQRQGIN-LVTTETITLTEAL 279
KG++ Q+I +G + GD+II + K F+ N ++ T I+ +A+
Sbjct: 229 PKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAI 288
Query: 280 CGFTKVIKHLD-DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
G +IK LD D + + P + E I I +G+ N ++G L IK ++ P
Sbjct: 289 LGNEIIIKTLDGDIKYKL---PKSINSNELII-INNKGLYKSINKDKRGDLIIKVNIVVP 344
Query: 339 ESYFNNDAKL 348
++ + +L
Sbjct: 345 KNLSKKEKEL 354
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 152 bits (385), Expect = 5e-43
Identities = 107/311 (34%), Positives = 159/311 (51%), Gaps = 31/311 (9%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGD---KFKEISFAYEVLSDEKKRATY 63
Y++LGVSK+AS ++KKAY KLAK++HPD +A D KFKEI+ AY+VL DE+KRA Y
Sbjct: 6 YQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAY 64
Query: 64 DRYG---IQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPH----RGEDT 116
DR+G Q + + GGG I+ +FG GG R RP RG D
Sbjct: 65 DRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDF---MGGSRRSRPTSSKVRGSDL 121
Query: 117 VHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIG 175
+ L ++LE+ ++G + + V C TC+G GS+ G T TC +C G +G
Sbjct: 122 KYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSG---------VG 172
Query: 176 PNMTQQ----IQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI 231
QQ I+ C CQG G+++ K+ C C G ++ L VN+ G++ +I
Sbjct: 173 ATRMQQGFFTIEQACHKCQGNGQII--KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230
Query: 232 YFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD 290
GEG+ GD+ + + KPHD ++ G NL I+ A G + ++
Sbjct: 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIE 290
Query: 291 DRQLLITHPPG 301
++ +T P G
Sbjct: 291 GGKVNLTIPAG 301
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 149 bits (377), Expect = 7e-42
Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEK 58
M+ YEVLGV ++AS E+KKAYRKLA+++HPD K P+A DKFKE+ AY+ LSD +
Sbjct: 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQ 60
Query: 59 KRATYDRYGIQGIKEKAGGGGA-DFS--DDLISQLFGGRLFGMGGPFGGHSRGRPHRGED 115
K+A YD++G + GGGGA DF D+ FGG GG G + P +G D
Sbjct: 61 KKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGG-----GG--GRRNPNAPRQGAD 113
Query: 116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKIHHRII 174
+ + + ++ GK T++++ + C TC+G G+K G TC+ C G G +++
Sbjct: 114 LQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSG-QLNVEQN 172
Query: 175 GPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR 234
P + C C+G G+++ K +C +C G+ + +K + V V G+ Q++
Sbjct: 173 TPFGRVVNRRVCHHCEGTGKII--KQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230
Query: 235 GEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
G+G+ + P GD+ +V KPH+ F+R G ++ +T + G
Sbjct: 231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALG 278
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 139 bits (353), Expect = 1e-40
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 213 VKKVLEVNVDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTE 271
KK L V + G+ + Q++ RGEGD P PGD+ +V+ KPH F+R G +L
Sbjct: 33 EKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEV 92
Query: 272 TITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI 331
I+LTEAL G + ++ + PPG +P + + G+GMP +G LY+
Sbjct: 93 PISLTEALLGGEIEVPT-LGGKVKLKIPPGT--QPGTVLRLKGKGMPRL-RGGGRGDLYV 148
Query: 332 KFDVQFPES 340
+ V+FP+
Sbjct: 149 EVKVEFPKK 157
Score = 37.8 bits (89), Expect = 0.002
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVI 142
D + L+++LE+ Y GK ++++ + V
Sbjct: 1 ADLRYDLELTLEEAYFGKEKEIKIPRKVT 29
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 135 bits (342), Expect = 9e-37
Identities = 101/340 (29%), Positives = 172/340 (50%), Gaps = 21/340 (6%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
YE+L V K ++ + IKK+YRKLA ++HPD+N EA +KFK I+ AY VLSDEKKRA Y
Sbjct: 6 YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALY 65
Query: 64 DRYGIQGIKEKAGGGGADFSD---DLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
DRYG +G+ + AG +DFSD DL S F FG G G R + D + +
Sbjct: 66 DRYGKKGLNQ-AGASQSDFSDFFEDLGS--FFEDAFGFGAR--GSKRQKSSIAPDYLQTI 120
Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
++S ++ G +++ +C +C+G G+K A TC C G G ++
Sbjct: 121 ELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQG-----QVFMRQGFM 175
Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
C CQG+G+++ K C +C G+ + + ++ + +G+ + ++ + +G++
Sbjct: 176 SFAQTCGACQGKGKII--KTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEY 233
Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
+ GD+ + K + F+R+G +L + T G T + L +L + P
Sbjct: 234 EKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPR 293
Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
+ EG+ ++ Y +G+L ++ V +P+S
Sbjct: 294 NA--RDRQTFAFRNEGVKHPESSY-RGSLIVELQVIYPKS 330
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 109 bits (274), Expect = 4e-30
Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 3/62 (4%)
Query: 6 LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRAT 62
YE+LGV + ASD+EIKKAYRKLA ++HPDKNP A +KFKEI+ AYEVLSD +KRA
Sbjct: 2 YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61
Query: 63 YD 64
YD
Sbjct: 62 YD 63
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 106 bits (267), Expect = 9e-27
Identities = 67/147 (45%), Positives = 82/147 (55%), Gaps = 18/147 (12%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEK 58
MA Y +LGV K+AS EIKKA++KLA+++HPD K+P A +KFKEI+ AY VLSD +
Sbjct: 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE 60
Query: 59 KRATYDRYG-------IQGIKEKAGGGG-------ADFSDDLISQLFGGR-LFGMGGPFG 103
KR YD YG QG GGG DFS D QLFGGR FG G
Sbjct: 61 KRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFS-DFFQQLFGGRGGFGGFGDLF 119
Query: 104 GHSRGRPHRGEDTVHPLKVSLEDLYNG 130
G R +G D L ++LE+ Y G
Sbjct: 120 GSVGRRARKGRDLEAELPLTLEEAYRG 146
Score = 34.9 bits (80), Expect = 0.048
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 207 GRKTLSVK-KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGI 265
G K + V + L V + G++E Q I G+G Q GD+ +V+ PH F+ +G
Sbjct: 147 GEKVVEVAGERLSVRIPPGVREGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGD 201
Query: 266 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKG-----IVGEGMPIY 320
+L T + A+ G + LD P EV P + + G+G P
Sbjct: 202 DLYATVDVPAPIAVVGGKVRVMTLDG--------PVEVTIPPRTQAGRKLRLKGKGWP-- 251
Query: 321 KNPYEKGTLYIKFDVQFPE 339
+ P +G Y + + P
Sbjct: 252 RGPAGRGDQYAEVRITIPT 270
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 95.0 bits (237), Expect = 7e-25
Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 4/60 (6%)
Query: 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKK 59
T YE+LGV + AS EIKKAYRKLA ++HPDKNP EA +KFKEI+ AYEVLSD +K
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 90.7 bits (226), Expect = 3e-23
Identities = 37/53 (69%), Positives = 44/53 (83%), Gaps = 3/53 (5%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSD 56
Y++LGV ASD+EIKKAYRKLA ++HPDKNP EA +KFKEI+ AYEVLSD
Sbjct: 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 87.2 bits (217), Expect = 1e-21
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 266 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYE 325
+L T I+L EAL G T + LD R++ I P G +P D I G+GMPI K
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAG--TQPGDKLRIKGKGMPINKGGNG 58
Query: 326 KGTLYIKFDVQFPESYFNNDAKL 348
+G L + +V+ P+ + +L
Sbjct: 59 RGDLIVTLNVKIPKKLSSEQKEL 81
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 93.7 bits (232), Expect = 7e-21
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
YEVLG+ + A +QEIKKA+RKLAK++HPD+N P+A F EI+ A +VLS+ KKRA YD
Sbjct: 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYD 64
Query: 65 RYGIQGIKEKAGGGGADFSDDLISQLF 91
+YG G+ DF D+ + F
Sbjct: 65 KYGHDGVD---REDDFDFQADVFNSFF 88
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 88.3 bits (219), Expect = 6e-20
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 20/132 (15%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
Y ++GV + + IK AYR+LA+++HPD K P+A +FKE++ A+EVLSDE++RA YD
Sbjct: 7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66
Query: 65 ---------RYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRP-HRGE 114
++ Q A+ DD+ S +F G SR RP RG
Sbjct: 67 QLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIF--------GQHARQSRQRPAARGH 118
Query: 115 DTVHPLKVSLED 126
D + V LE+
Sbjct: 119 DIEIEVAVFLEE 130
Score = 35.6 bits (82), Expect = 0.029
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 207 GRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGI 265
G + K L V + G+ Q+I +G+G + P GD+ +V+ PH F G
Sbjct: 150 GMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQ 209
Query: 266 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG 301
+L + EA G + L + +L+T PPG
Sbjct: 210 DLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG 244
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 83.3 bits (205), Expect = 1e-18
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
YE+LGV +AS +EIKKAYRKLA ++HPD+NP A +KFKEI+ AYE+LSD
Sbjct: 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD 62
Query: 57 EKKRATYDRYGIQ--------GIKEKAGGGGADFSDDLISQLFGGR 94
++RA YD+ G G+ L + G R
Sbjct: 63 PERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKR 108
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 74.2 bits (182), Expect = 2e-14
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--------EAGDKFKEISFAYEVLSDEK 58
YE+LG+ + S+++IKK YR L+ +FHPDK P E +K+K I+ AY +L+D+K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160
Query: 59 KRATYDRYGIQGIKEKAGGGGA------DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHR 112
+R Y YG + G A + + + L G+ P+ + R R
Sbjct: 161 RRENYLNYGTPDSPQHTSEGIALPKVIVRSERSMYAFVMYSLLLGVFLPYWVYRWWREIR 220
Query: 113 GEDTVHPLKVSLEDLY 128
V V++E Y
Sbjct: 221 DYTKVGVHFVTMEMFY 236
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The central
cysteine-rich (CR) domain of DnaJ proteins contains four
repeats of the motif CXXCXGXG where X is any amino acid.
The isolated cysteine rich domain folds in zinc
dependent fashion. Each set of two repeats binds one
unit of zinc. Although this domain has been implicated
in substrate binding, no evidence of specific
interaction between the isolated DNAJ cysteine rich
domain and various hydrophobic peptides has been found.
Length = 65
Score = 67.0 bits (164), Expect = 2e-14
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 143 CSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201
C C+G G+K G TC C G G + + P Q+Q C C G G+++ KD
Sbjct: 1 CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQR-TPGGVFQMQQTCPKCGGTGKII--KDP 57
Query: 202 CGSCAGRK 209
C C G+
Sbjct: 58 CKVCKGKG 65
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40.
Central/middle or CxxCxGxG-motif containing domain of
DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are
highly conserved and play crucial roles in protein
translation, folding, unfolding, translocation, and
degradation. They act primarily by stimulating the
ATPase activity of Hsp70s, an important chaperonin
family. Hsp40 proteins are characterized by the presence
of an N-terminal J domain, which mediates the
interaction with Hsp70. This central domain contains
four repeats of a CxxCxGxG motif and binds to two Zinc
ions. It has been implicated in substrate binding.
Length = 65
Score = 65.4 bits (160), Expect = 7e-14
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 143 CSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201
C TCNG G+K G TC +C G G + G Q Q C C G G+++ KD
Sbjct: 1 CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGF-GFFQTQTTCPTCGGTGKII--KDP 57
Query: 202 CGSCAGRK 209
C C G+
Sbjct: 58 CPKCKGKG 65
Score = 26.1 bits (58), Expect = 7.2
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 140 SVICSTCNGKGSKSGATFTCASCRG 164
C TC G G C C+G
Sbjct: 41 QTTCPTCGGTGKI--IKDPCPKCKG 63
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 65.2 bits (160), Expect = 4e-12
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 10/63 (15%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDK------NPE----AGDKFKEISFAYEVLSD 56
Y+VLGVS+S DQEIK+AYRKL E HPDK PE A +K +EI AYE++
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262
Query: 57 EKK 59
+K
Sbjct: 263 QKG 265
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 61.7 bits (149), Expect = 3e-10
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKR 60
DT Y++LGV +A +EI + Y KLA+ ++P K E KFK+I+ AY++L D K+
Sbjct: 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKK 631
Query: 61 ATYDRYGIQGIKE 73
Y+++G GIK
Sbjct: 632 KMYNKFGYDGIKG 644
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 52.3 bits (125), Expect = 2e-07
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 6 LYEVLGVSK---SASDQEIKKAYRKLAKEFHPDKNPEAGDK-----FKEISFAYEVLSDE 57
LY +LG+SK A +I KA++K ++HPDK G+K FK I A EVL D
Sbjct: 45 LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104
Query: 58 KKRATYD 64
K R YD
Sbjct: 105 KLRLQYD 111
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 42.7 bits (101), Expect = 5e-05
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 5 KLYEVLGVSKSASDQE--IKKAYRKLAKEFHPDK--NPEAGDKFKEISFAYEVLSDEKKR 60
+L ++LG+ +SA ++KAY + EFHPDK + E K KE++ Y+ + K
Sbjct: 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEE---KMKELNTLYKKFRESVKS 62
Query: 61 A 61
Sbjct: 63 L 63
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 42.3 bits (100), Expect = 7e-05
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYD 64
+VLGV A IKKAYRKL E HPDK G K + I E L ++ + Y+
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKL--QEIQEAYE 171
Score = 34.2 bits (79), Expect = 0.050
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 19 QEIKKAYRKLAKEFHPDKNPEAGD--------KFKEISFAYEVLSDEKKRATY 63
+K YR+L + +HPD+ +A + + E++ AY+ L D RA Y
Sbjct: 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 42.3 bits (100), Expect = 3e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 5 KLYEVLGVSKSASDQE--IKKAYRKLAKEFHPDK--NPEAGDKFKEISFAYEVLSDEKKR 60
+L ++LG+ +A ++KAY + KE+HPDK + E K K ++ Y+ L + K
Sbjct: 12 ELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEE---KMKRLNSLYKKLQEGVKS 68
Query: 61 A 61
A
Sbjct: 69 A 69
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 38.8 bits (91), Expect = 0.001
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 24 AYRKLAKEFHPDKNPEAGDKFKEISF--------AYEVLSDEKKRATY 63
AYR + + HPD+ AGD K ++ AY+ L D KRA Y
Sbjct: 28 AYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARY 75
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat
shock cognate protein) of a pair of proteins
Hsc66-Hsc20, related to the DnaK-DnaJ heat shock
proteins, which also serve as molecular chaperones.
Hsc20, unlike DnaJ, appears not to have chaperone
activity on its own, but to act solely as a regulatory
subunit for Hsc66 (i.e., to be a co-chaperone). The
gene for Hsc20 in E. coli, hscB, is not induced by heat
shock [Protein fate, Protein folding and
stabilization].
Length = 155
Score = 33.7 bits (77), Expect = 0.056
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 19 QEIKKAYRKLAKEFHPDKNPEAGDKFK------EISFAYEVLSDEKKRATY 63
++K YR+L ++HPD + A ++ ++ AY L D +RA Y
Sbjct: 6 SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 33.7 bits (77), Expect = 0.076
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 25 YRKLAKEFHPDKNPEAGDKFKEISF--------AYEVLSDEKKRATY 63
YR+LA+E HPD+ +A ++ + ++ AY+ L +RA Y
Sbjct: 27 YRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
domain. This is part of the ubiquitin-mediated protein
degradation pathway in which a thiol-ester linkage forms
between a conserved cysteine and the C-terminus of
ubiquitin and complexes with ubiquitin protein ligase
enzymes, E3. This pathway regulates many fundamental
cellular processes. There are also other E2s which form
thiol-ester linkages without the use of E3s as well as
several UBC homologs (TSG101, Mms2, Croc-1 and similar
proteins) which lack the active site cysteine essential
for ubiquitination and appear to function in DNA repair
pathways which were omitted from the scope of this CD.
Length = 141
Score = 32.6 bits (75), Expect = 0.13
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 290 DDRQLLITHPPGEVIKP--EDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESY 341
+ + L P G +P E++ G PYE G K D++FPE Y
Sbjct: 7 ELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGG--IFKLDIEFPEDY 58
>gnl|CDD|115907 pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain.
This putative domain is found at the C-terminus of a
large number of transposase proteins. This domain
contains four conserved cysteines suggestive of a zinc
binding domain. Given the need for transposases to bind
DNA as well as the large number of DNA-binding zinc
fingers we hypothesise this domain is DNA-binding.
Length = 69
Score = 30.2 bits (69), Expect = 0.26
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 140 SVICSTCNGKGSK--SGATFTCASCRGCGFKIH 170
S CS C K + SG TF C CGF
Sbjct: 28 SKTCSVCGHKNKESLSGRTFKC---PNCGFVAD 57
>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains
DnaJ-type Zn finger domain [DNA replication,
recombination, and repair].
Length = 715
Score = 32.8 bits (75), Expect = 0.29
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 131 KTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQ 190
+T L + + C C GKG+ + TC C G G + I G + + C +C+
Sbjct: 44 ETVDLFASFEIPCPKCRGKGTVTV-YDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECR 102
Query: 191 GEGEV 195
+ ++
Sbjct: 103 RKPKI 107
Score = 31.2 bits (71), Expect = 0.88
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 140 SVICSTCNGKGSKSGATFTCASCRGCGF------KIHHRI--IGPNMTQQIQARCSDCQG 191
C C GKG C C G GF K + ++ + C C+G
Sbjct: 2 IKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRG 61
Query: 192 EG--EVMNEKDRCG 203
+G V + CG
Sbjct: 62 KGTVTVYDTCPECG 75
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 31.0 bits (70), Expect = 0.30
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPD 35
M+ ++ Y++L +S +AS + I++A+++L HPD
Sbjct: 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|148664 pfam07191, DUF1407, Protein of unknown function (DUF1407). This
family consists of several short, hypothetical bacterial
proteins of around 70 residues in length. Members of
this family have 8 highly conserved cysteine residues,
which form two zinc ribbon domains.
Length = 70
Score = 29.6 bits (67), Expect = 0.46
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 17/63 (26%)
Query: 142 ICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201
IC C + G + C C + QA C DC E EV+
Sbjct: 3 ICPQCQQELEWKGGHYHCDQC-------QKDF-------KKQALCPDCHQELEVLKA--- 45
Query: 202 CGS 204
CG+
Sbjct: 46 CGA 48
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 25 YRKLAKEFHPDK---NPE-----AGDKFKEISFAYEVLSDEKKRATY 63
Y++L ++FHPDK E A + I+ AY+ L KRA Y
Sbjct: 24 YQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEY 70
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 29.8 bits (67), Expect = 1.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 21 IKKAYRKLAKEFHPDKNPEAGDKFK------EISFAYEVLSDEKKRATY 63
++K Y + ++HPDK +K + E++ AY L D KRA Y
Sbjct: 21 LEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEY 69
>gnl|CDD|205984 pfam13811, DUF4186, Domain of unknown function (DUF4186).
Length = 112
Score = 29.1 bits (66), Expect = 1.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 155 ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSD 188
AT TC CRGC K H G +T++ QA D
Sbjct: 73 ATATC--CRGCLEKWHGIPKGRALTEEEQAYIVD 104
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 6 LYEVLGVS-KSASDQE-IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATY 63
+ +LG + +A D +++KL P++ ++ AY V+ + K T
Sbjct: 603 AWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADAYAVMKNYAKAITS 657
Query: 64 DRYGIQ 69
+ ++
Sbjct: 658 LKRALE 663
>gnl|CDD|188752 cd09366, LIM1_Isl, The first LIM domain of Isl, a member of LHX
protein family. The first LIM domain of Isl: Isl is a
member of LHX protein family, which features two tandem
N-terminal LIM domains and a C-terminal DNA binding
homeodomain. Isl1 and Isl2 are the two conserved members
of this family. Proteins in this group are found in the
nucleus and act as transcription factors or cofactors.
LHX proteins are critical for the development of
specialized cells in multiple tissue types, including
the nervous system, skeletal muscle, the heart, the
kidneys, and endocrine organs, such as the pituitary
gland and the pancreas. Isl-1 is one of the LHX proteins
isolated originally by virtue of its ability to bind DNA
sequences from the 5'-flanking region of the rat insulin
gene in pancreatic insulin-producing cells. Mice
deficient in Isl-1 fail to form the dorsal exocrine
pancreas and islet cells fail to differentiate. On the
other hand, Isl-1 takes part in the pituitary
development by activating the gonadotropin-releasing
hormone receptor gene together with LHX3 and
steroidogenic factor 1. Mouse Is l2 is expressed in the
retinal ganglion cells and the developing spinal cord
where it plays a role in motor neuron development. Same
as Isl1, Isl2 may also be able to bind to the insulin
gene enhancer to promote gene activation. All LIM
domains are 50-60 amino acids in size and share two
characteristic zinc finger motifs. The two zinc fingers
contain eight conserved residues, mostly cysteines and
histidines, which coordinately bond to two zinc atoms.
LIM domains function as adaptors or scaffolds to support
the assembly of multimeric protein complexes.
Length = 55
Score = 27.3 bits (61), Expect = 1.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 162 CRGCGFKIHHRII---GPNMTQQIQARCSDCQGEGEVMNEKDRC 202
C GCG KIH + I P++ + A C C G+ ++E C
Sbjct: 1 CVGCGGKIHDQYILRVAPDL--EWHAACLKCAECGQYLDETCTC 42
>gnl|CDD|206005 pfam13834, DUF4193, Domain of unknown function (DUF4193). This
domain of unknown function contains four conserved
cysteines and a conserved histidine, including a CXXXXH
motif.
Length = 99
Score = 28.3 bits (64), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 157 FTCASCRGCGFKIHHR--IIGPNMTQQIQARCSDC 189
FTC+SC F +HHR + Q I C DC
Sbjct: 71 FTCSSC----FLVHHRSQLAREKDGQPI---CKDC 98
>gnl|CDD|153337 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting
Protein 4 and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Cdc42-Interacting Protein 4 (CIP4), Formin Binding
Protein 17 (FBP17), FormiN Binding Protein 1-Like
(FNBP1L), and similar proteins. CIP4 and FNBP1L are
Cdc42 effectors that bind Wiskott-Aldrich syndrome
protein (WASP) and function in endocytosis. CIP4 and
FBP17 bind to the Fas ligand and may be implicated in
the inflammatory response. CIP4 may also play a role in
phagocytosis. Members of this subfamily typically
contain an N-terminal F-BAR domain and a C-terminal SH3
domain. In addition, some members such as FNBP1L
contain a central Cdc42-binding HR1 domain. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 251
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 19 QEIKKAY----RKLAKEFHPDKNPEAGDKFKEISFAYEVLS 55
I++ Y RKL K++ P K E F + +L+
Sbjct: 32 AAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILN 72
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Proteins destined
for proteasome-mediated degradation may be
ubiquitinated. Ubiquitination follows conjugation of
ubiquitin to a conserved cysteine residue of UBC
homologues. TSG101 is one of several UBC homologues that
lacks this active site cysteine.
Length = 139
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 323 PYEKGTLYIKFDVQFPESY 341
PYE G K D++FPE Y
Sbjct: 40 PYEGG--VFKLDIEFPEDY 56
>gnl|CDD|143542 cd07168, NR_DBD_DHR4_like, DNA-binding domain of ecdysone-induced
DHR4 orphan nuclear receptor is composed of two C4-type
zinc fingers. DNA-binding domain of ecdysone-induced
DHR4 orphan nuclear receptor is composed of two C4-type
zinc fingers. Each zinc finger contains a group of four
Cys residues which coordinates a single zinc atom. This
domain interacts with specific DNA sites upstream of the
target gene and modulates the rate of transcriptional
initiation. Ecdysone-induced orphan receptor DHR4 is a
member of the nuclear receptor family. DHR4 is expressed
during the early Drosophila larval development and is
induced by ecdysone. DHR4 coordinates growth and
maturation in Drosophila by mediating endocrine response
to the attainment of proper body size during larval
development. Mutations in DHR4 result in shorter larval
development which translates into smaller and lighter
flies. Like other members of the nuclear receptor (NR)
superfamily of ligand-activated transcription factors,
DHR4 has a central well conserved DNA binding domain
(DBD), a variable N-terminal domain, a flexible hinge
and a C-terminal ligand binding domain (LBD).
Length = 90
Score = 27.1 bits (60), Expect = 4.1
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 140 SVICSTCNGKGSKSGATFTCASCRGC-GFKIHHRIIGPNMTQQIQ-ARCSDCQGEGE--- 194
+CS C K + G + +C GC GF + +Q R C G+G
Sbjct: 6 PKLCSICEDKAT--GLHYGIITCEGCKGF----------FKRTVQNKRVYTCVGDGRCEI 53
Query: 195 VMNEKDRCGSCAGRKTLSVKKVLE 218
+++RC C RK + +L
Sbjct: 54 TKAQRNRCQYCRFRKCIRKGMMLA 77
>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase. This model
represents the NAD-dependent L-lactate dehydrogenases
from bacteria and eukaryotes. This enzyme function as as
the final step in anaerobic glycolysis. Although lactate
dehydrogenases have in some cases been mistaken for
malate dehydrogenases due to the similarity of these two
substrates and the apparent ease with which evolution
can toggle these activities, critical residues have been
identified which can discriminate between the two
activities. At the time of the creation of this model no
hits above the trusted cutoff contained critical
residues typical of malate dehydrogenases [Energy
metabolism, Anaerobic, Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 299
Score = 28.3 bits (64), Expect = 6.5
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 36/107 (33%)
Query: 26 RKLAKEFHPDKNPEAGDKFKEIS-FAYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSD 84
K + + + + KE+ AYE++ +K ATY YGI G A +
Sbjct: 188 LDYLKAKGTETDLDLEEIEKEVRDAAYEII--NRKGATY--YGI-------GMAVARIVE 236
Query: 85 DLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGK 131
++ E+ V P+ L+ Y K
Sbjct: 237 AIL------------------------HDENRVLPVSAYLDGEYGIK 259
>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26.
Vacuolar protein sorting-associated protein (Vps) 26 is
one of around 50 proteins involved in protein
trafficking. In particular, Vps26 assembles into a
retromer complex with at least four other proteins Vps5,
Vps17, Vps29 and Vps35. This family also contains Down
syndrome critical region 3/A.
Length = 275
Score = 27.8 bits (62), Expect = 8.4
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 214 KKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINL 267
+K +EV + G KE +Y+ D E + + K + + QGI +
Sbjct: 17 RKTVEVKTEDGKKEKNPVYY--------DGESVSGKVNIRLKDGKKVEHQGIKI 62
>gnl|CDD|239439 cd03323, D-glucarate_dehydratase, D-Glucarate dehydratase (GlucD)
catalyzes the dehydration of both D-glucarate and
L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) ,
the initial reaction of the catabolic pathway for
(D)-glucarate. GlucD belongs to the enolase superfamily
of enzymes, characterized by the presence of an enolate
anion intermediate which is generated by abstraction of
the alpha-proton of the carboxylate substrate by an
active site residue and that is stabilized by
coordination to the essential Mg2+ ion.
Length = 395
Score = 28.1 bits (63), Expect = 8.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 60 RATYDRYGIQGIKEKAG 76
RA DRYG + K K G
Sbjct: 177 RAAIDRYGFKSFKLKGG 193
>gnl|CDD|153104 cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like
proteins found in archaea and bacteria. Ferritin-like
domain found in archaea and bacteria (Ferritin_like_AB).
This uncharacterized domain is a member of a broad
superfamily of ferritin-like diiron-carboxylate proteins
whose function is unknown. This family includes unknown
or hypothetical proteins which were sequenced from
mostly anaerobic or microaerophilic metal-metabolizing
and/or nitrogen-fixing microbes. The family includes
sequences from ferric-, sulfate-, and arsenic-reducing
bacteria, Geobacter, Magnetospirillum, Desulfovibrio,
and Desulfitobacterium. Also included are several
nitrogen-fixing endosymbiotic bacteria, Rhizobium,
Mesorhizobium, and Bradyrhizobium; also phototrophic
purple nonsulfur bacteria, Rhodobacter and
Rhodopseudomonas, as well as, obligate thermophiles,
Thermotoga, Thermoanaerobacter, and Pyrococcus. The
conserved residues of a diiron center are present in
this uncharacterized domain.
Length = 139
Score = 26.9 bits (60), Expect = 10.0
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 5 KLYEVLGVSKSASDQEIKKAYRKLAKE 31
+ YE L ++ A D E+KK + +LA+E
Sbjct: 103 EFYEEL--AEKAEDPEVKKLFEELAEE 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.408
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,800,736
Number of extensions: 1729325
Number of successful extensions: 2105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1832
Number of HSP's successfully gapped: 91
Length of query: 349
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 251
Effective length of database: 6,590,910
Effective search space: 1654318410
Effective search space used: 1654318410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)