RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4972
(349 letters)
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 337 bits (866), Expect = e-116
Identities = 106/247 (42%), Positives = 147/247 (59%), Gaps = 2/247 (0%)
Query: 103 GGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASC 162
G P RG+D H + SLE+LY G+T KL L K ++C C G+G K GA C SC
Sbjct: 1 GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSC 60
Query: 163 RGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222
G G K R +GP M Q+ Q C C G G++++ KDRC SC G+K + +K+LEV+V+
Sbjct: 61 NGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVE 119
Query: 223 KGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGF 282
GMK+ Q+I F+GE DQ PD PGDV+ ++ ++PH F+R G +LV I L A+ G
Sbjct: 120 PGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGG 179
Query: 283 TKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF 342
++H+ L + PGEVI P K I G+GMPI K G L IKF ++ PE++F
Sbjct: 180 EFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHF 238
Query: 343 NNDAKLK 349
++ LK
Sbjct: 239 TSEENLK 245
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 229 bits (585), Expect = 3e-75
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 174 IGPNMTQQIQARCSD-CQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
+ P +T ++ + G + M + + G+ + K+L + V KG KE KI
Sbjct: 1 MDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKIT 60
Query: 233 FRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDR 292
F EGDQ + P D++ VL+ KPH+ F+R G +++ I+L EALCG T + LD R
Sbjct: 61 FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 120
Query: 293 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
+ + +VI+P + + GEG+P+ K P ++G L I+F+V FPE
Sbjct: 121 TIPV--VFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPER 166
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 209 bits (534), Expect = 2e-67
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 189 CQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ-PDQEPGD 247
G+ + + K K + + ++EV + G K+ K+ + GEGDQ+ P PGD
Sbjct: 18 YLGKRKKI--KVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGD 75
Query: 248 VIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPE 307
++++++ K H RF R +L+ TI L AL GFT + LD+R L I P E++ P+
Sbjct: 76 LVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQI--PIKEIVNPK 133
Query: 308 DIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
K + EGMPI P +KG L ++FD+ FP+S
Sbjct: 134 TRKIVPNEGMPIKNQPGQKGDLILEFDICFPKS 166
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 199 bits (509), Expect = 8e-62
Identities = 78/350 (22%), Positives = 125/350 (35%), Gaps = 95/350 (27%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYD 64
Y +LGV + + IK AYR+LA+++HPD + +A KFK+++ A+EVL DE++RA YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
Query: 65 RYGIQGIKEKAGGG---------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGED 115
+ G DF D+ S +FG + R RG D
Sbjct: 91 QLWQHRNDPGFGRQRQTHEQSYSQQDFD-DIFSSMFGQQ-------AHQRRRQHAARGHD 142
Query: 116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIG 175
+ V LE+ +T +
Sbjct: 143 LEIEVAVFLEETLAEQTRTISY-------------------------------------- 164
Query: 176 PNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRG 235
+ G E K L V + G+ + Q+I +G
Sbjct: 165 -------NLPVYNVFGMIESETPK----------------TLNVKIPAGVVDGQRIRLKG 201
Query: 236 EGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQL 294
+G + GD+ +V+ PH F G NL + EA G + L + +
Sbjct: 202 QGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-I 260
Query: 295 LITHPP----GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
L+T PP G+ ++ IK G+G+ + G L+ + P
Sbjct: 261 LLTVPPGSQAGQRLR---IK---GKGLV---SKTHTGDLFAVIKIVMPTK 301
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 187 bits (477), Expect = 4e-59
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 204 SCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDRFQR 262
G S K +++ + G K KI ++ +GD P + V+++K H F+R
Sbjct: 25 GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 263 QGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 322
G +L+ T ++ E+L GF+K I+ +D R L ++ + ++P G+GMP KN
Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQTSTYPGQGMPTPKN 142
Query: 323 PYEKGTLYIKFDVQFPES 340
P ++G L +K+ V +P S
Sbjct: 143 PSQRGNLIVKYKVDYPIS 160
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 142 bits (360), Expect = 3e-41
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
Y +LGVSK+AS +EI++A++KLA + HPDKNP A F +I+ AYEVL DE R Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 64 DRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVS 123
D+YG +G+++ GG +S + + R
Sbjct: 65 DKYGEKGLEDNQGGQYESWSY------YRYDFGIYDDDPEIITLERR------------E 106
Query: 124 LEDLYNGKTTKLQLTKSVICSTC 146
+ N S CS C
Sbjct: 107 FDAAVNSGELWFVNFYSPGCSHC 129
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 137 bits (348), Expect = 5e-41
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
+ +TKLY++LGVS SA++QE+KK YRK A ++HPDK +KFKEIS A+E+L+D +KR
Sbjct: 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKR 64
Query: 61 ATYDRYGIQGIKEKAGGGGA 80
YD+YG++ + G
Sbjct: 65 EIYDQYGLEAARSGGPSFGP 84
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 136 bits (345), Expect = 2e-40
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
+ LY VLG+ K+A+ +IKK+YRKLA ++HPDKNP EA DKFKEI+ A+ +L+D
Sbjct: 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73
Query: 58 KKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGG 93
KR YD+YG G+ G + + +S G
Sbjct: 74 TKRNIYDKYGSLGLYVAEQFGEENVNTYFVSGPSSG 109
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 134 bits (340), Expect = 6e-40
Identities = 42/67 (62%), Positives = 53/67 (79%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
+ +T Y+VLGV ASD E+KKAYRK+A +FHPDKNP+ ++FK+IS AYEVLSDEKKR
Sbjct: 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64
Query: 61 ATYDRYG 67
YD+ G
Sbjct: 65 QIYDQGG 71
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 135 bits (342), Expect = 1e-39
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
F+R G +LV I L A+ G ++H+ L + PGEVI P K I G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 320 YKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
K G L IKF ++FPE++F ++ LK
Sbjct: 62 PKYG-GYGNLIIKFTIKFPENHFTSEENLK 90
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 130 bits (328), Expect = 9e-38
Identities = 51/98 (52%), Positives = 68/98 (69%), Gaps = 11/98 (11%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
YE+LGVSK+A ++EI+KAY++LA ++HPD+N EA KFKEI AYEVL+D +KRA Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 64 DRYGIQGIKEKAGGGG-----ADFSD---DLISQLFGG 93
D+YG ++ GGG ADFSD D+ +FGG
Sbjct: 66 DQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGG 103
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 131 bits (330), Expect = 1e-37
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAY 51
M Y +LG SA+ ++K+ Y+KL +HPDK E KF EI A+
Sbjct: 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66
Query: 52 EVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGG 104
++L +E+ + YD + G A + +S G F + GG
Sbjct: 67 KILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGG 119
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 128 bits (324), Expect = 2e-37
Identities = 46/85 (54%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
YEVLGV SAS ++IKKAYRKLA +HPDKNP EA KFK +S AYEVLSD
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 57 EKKRATYDRYGIQGIKEKAGGGGAD 81
KKR+ YDR G + G G
Sbjct: 66 SKKRSLYDRAGCDSWRAGGGASGPS 90
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 128 bits (324), Expect = 3e-37
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
+ T LY++LGV +A+ +IK AY + +HPD+N EA ++F IS AY VL
Sbjct: 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSA 73
Query: 58 KKRATYDRYGIQGIKEKAGGGG 79
R YDR + + G G
Sbjct: 74 TLRRKYDRGLLSDEDLRGPGSG 95
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 127 bits (322), Expect = 5e-37
Identities = 49/115 (42%), Positives = 60/115 (52%), Gaps = 20/115 (17%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
MA YE+L V +SAS +IKKAYR+ A ++HPDKNP A KFKE++ AYEVLSD
Sbjct: 1 MAS--YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSD 58
Query: 57 EKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPH 111
+ KR YDRYG +G+ G G GGP H H
Sbjct: 59 KHKREIYDRYGREGLTGTGTGPSRAE-------------AGSGGPGLEHH-HHHH 99
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 126 bits (319), Expect = 1e-36
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEK 58
+ Y++LGV KSAS+++IKKA+ KLA ++HPDKN +A KF+EI+ AYE LSD
Sbjct: 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDAN 63
Query: 59 KRATYDRYGIQGIKEKAGGGG 79
+R YD G G G
Sbjct: 64 RRKEYDTLGHSAFTSGKGQSG 84
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 124 bits (313), Expect = 6e-36
Identities = 40/74 (54%), Positives = 55/74 (74%), Gaps = 5/74 (6%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYD 64
Y+ LG+++ ASD+EIK+AYR+ A +HPDKN A +KFKEI+ AY+VLSD +KR +D
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65
Query: 65 RYGIQGIKEKAGGG 78
RYG +G+K G G
Sbjct: 66 RYGEEGLK---GSG 76
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 123 bits (311), Expect = 2e-35
Identities = 41/76 (53%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
YEVL V + AS + IKKAYRKLA ++HPDKNP EA +FK+++ AYEVLSD
Sbjct: 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65
Query: 57 EKKRATYDRYGIQGIK 72
KKR YDRYG
Sbjct: 66 AKKRDIYDRYGSGPSS 81
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 124 bits (313), Expect = 2e-35
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
Y +LG + +S ++I ++ A E HPDK+P +A + F+++ A E+L++E+ RA Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82
Query: 64 DRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGG 104
D + + +D GP G
Sbjct: 83 DHWRRSQM-SMPFQQWEALNDS----------VKTSGPSSG 112
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 121 bits (307), Expect = 4e-35
Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEK 58
+ YE+LGVS+ ASD+++KKAYR+LA +FHPDKN A + FK I AY VLS+ +
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 59 KRATYDRYGIQGIK 72
KR YD++G
Sbjct: 64 KRKQYDQFGSGPSS 77
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 121 bits (305), Expect = 1e-34
Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEKKRATYD 64
Y VLGVS++AS +IKKAY+KLA+E+HPDKN + G D+F +IS AYE+LS+E+KR YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 65 RYGIQGIK 72
YG
Sbjct: 80 HYGSGPSS 87
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 120 bits (304), Expect = 1e-34
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
+ Y++LGV ++AS +EIKKAY +LAK++HPD N +A +KF +++ AYEVLSDE
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 58 KKRATYDRYG 67
KR YD YG
Sbjct: 64 VKRKQYDAYG 73
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 115 bits (289), Expect = 3e-32
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAY 51
Y +LG SA+ ++K+ Y+KL +HPDK E KF EI A+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72
Query: 52 EVLSDEKKRATYDRYG 67
++L +E+ + YD
Sbjct: 73 KILGNEETKKKYDLQR 88
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 113 bits (285), Expect = 2e-31
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 1 MADTKLYEVLGVSKSASDQ-EIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEV 53
Y+VL V++ D+ ++ KAYR LA++ HPD+ A ++F+ I+ AYE
Sbjct: 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYET 71
Query: 54 LSDEKKRATYDRYG 67
L D++ + YD Y
Sbjct: 72 LKDDEAKTNYDYYL 85
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 107 bits (269), Expect = 4e-29
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 4 TKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRA 61
+L ++LG+ +SA + ++KAY K KEFHPDK + +K K+++ Y+ + D K A
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVKYA 66
Query: 62 TYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFG 97
+G + G D + + LF
Sbjct: 67 HQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFC 102
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 106 bits (266), Expect = 7e-29
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEK 58
+++LGV AS E+ KAYRKLA HPDK P + D FK + A L
Sbjct: 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNI 83
Query: 59 KRATYD 64
K
Sbjct: 84 KSGPSS 89
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 116 bits (291), Expect = 8e-29
Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
D Y +LGVSK+AS +EI++A++KLA + HPDKNP A F +I+ AYEVL DE
Sbjct: 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDE 77
Query: 58 KKRATYDRYGIQGIKEKAGGGGADF-----------SDDLISQLFGGRLFGMGGPFGGHS 106
R YD+YG +G+++ GG + D I L
Sbjct: 78 DLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWF 137
Query: 107 RGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT 156
G H L + + L++ V C G
Sbjct: 138 VNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGA-VNCGDDRMLCRMKGVN 186
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 106 bits (265), Expect = 9e-28
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
+L ++LG+ +SA + ++KAY K KEFHPDK + +K K+++ Y+ + D K A
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVKYAH 70
Query: 63 YDRYGIQGIKEK--AGGGGADFSDDLISQ 89
+G + A Q
Sbjct: 71 QPDFGGFWDATEVFASSLNPGVDAIYCKQ 99
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 102 bits (255), Expect = 2e-27
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKR 60
++ V+ + + E KK R+L ++HPDKNP A + FK + L K+
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQ 73
Query: 61 ATYDRYGIQGIK 72
A D+ + +
Sbjct: 74 AFLDQNADRASR 85
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 90.9 bits (226), Expect = 2e-20
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKR 60
Y++LGV ++A QEI KAYRKLA ++HPD +A KF +I+ A EVLSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 61 ATYDR 65
+D
Sbjct: 445 KKFDD 449
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 80.0 bits (197), Expect = 4e-18
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 7 YEVLGVSKSA-------SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKK 59
YE+ + ++K YR+L + HPD + ++ ++ AY L D +
Sbjct: 14 YELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLR 73
Query: 60 RATYDRYGIQGIKEKAGGGGADFS 83
R+ Y ++ I + +
Sbjct: 74 RSQYMLKLLRNIDLTQEQTSNEVT 97
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 70.7 bits (174), Expect = 1e-15
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHH 171
G ++++ G + + C CNGKG++ G C C G G
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG-MET- 58
Query: 172 RIIGPNMTQ---QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN 220
+ +++ C C G G ++ C C G KK +
Sbjct: 59 ------INTGPFVMRSTCRRCGGRGSII--ISPCVVCRGAGQAKQKKRSGPS 102
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 72.7 bits (178), Expect = 1e-15
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 7 YEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNP--------EAGDKFKEISFAYEVLSD 56
+E+ G+ + +R L K FHPD A + +I+ AY+ L D
Sbjct: 7 FELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKD 66
Query: 57 EKKRATYDRY 66
+RA Y
Sbjct: 67 PLRRAEYLLS 76
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 72.6 bits (177), Expect = 2e-15
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKR 60
++ +G++ + +++KK YRK HPDK A F E++ A+ ++ ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 61 ATY 63
Y
Sbjct: 180 PLY 182
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 71.9 bits (176), Expect = 2e-15
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 7 YEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNP--------EAGDKFKEISFAYEVLSD 56
+ + G+ Q + ++ L +++HPDK A + I+ A++ L
Sbjct: 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63
Query: 57 EKKRATYDRY 66
RA Y
Sbjct: 64 PLMRAEYLLS 73
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 69.2 bits (169), Expect = 2e-15
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGD--KFKEISFAYEVLSDEKKR 60
+L E+L + + +++AY++ + HPDK G +E++ + E
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68
Query: 61 ATYDRYG 67
+ G
Sbjct: 69 LRMNLGG 75
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 65.5 bits (159), Expect = 1e-12
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 7 YEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNP--------EAGDKFKEISFAYEVLSD 56
+ ++ ++S +++ Y++L + HPD + ++ AY+ L
Sbjct: 46 FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105
Query: 57 EKKRATYDRYGIQGIKEKAGGGGADFSDDLISQL 90
R Y + GI+ LI +
Sbjct: 106 PLSRGLYL-LKLHGIEIPERTDYEMDRQFLIEIM 138
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 58.8 bits (143), Expect = 1e-11
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 130 GKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPNMTQ---QIQAR 185
G T ++++ C C+G G+K G TC +C G G ++ M Q +Q
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG-QVQ-------MRQGFFAVQQT 52
Query: 186 CSDCQGEGEVMNEKDRCGSCAGR 208
C CQG G ++ KD C C G
Sbjct: 53 CPHCQGRGTLI--KDPCNKCHGH 73
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 58.1 bits (141), Expect = 2e-11
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 7 YEVLGVSKSA-SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
++L ++++ + +++K+ +RK+ HPDK +I+ A + L
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-FLATKINEAKDFLEKRGIS 70
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 56.6 bits (136), Expect = 1e-10
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDE 57
++ +G++ + +++KK YRK HP K A F E++ A+ ++
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 53.8 bits (129), Expect = 2e-09
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----------AGDKFKEISFAYEVLSD 56
++ + + ++K+Y++ HPDK + A F+ + A++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
Query: 57 E 57
Sbjct: 103 L 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 56/420 (13%), Positives = 107/420 (25%), Gaps = 147/420 (35%)
Query: 20 EIKKAYRKLAKEFHPD--KNPEAGDKFKEIS-FAYEVLSDE--------KKRATYDRYGI 68
E + Y+ + F N + K++ +LS E K +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 69 QGIKEKAGGGGADFSDDLISQLFGGRLFGMG-------GPFGG-----HSRGRPHRGEDT 116
+ K F ++++ + F M P R R +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 117 VHPLKVSLEDLYNGKTTKLQLTKSVICSTCNG-KGS-KSGATFTCASCRGCGFKIHHRII 174
VS Y L + +G GS K+ C +K+
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVCL--SYKVQ---- 177
Query: 175 GPNMTQQIQARCSDCQGEGEV--MNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
C+ + ++ +N +C +T+ ++ +QK+
Sbjct: 178 --------------CKMDFKIFWLN----LKNCNSPETV-------------LEMLQKLL 206
Query: 233 FR--GEGDQQPDQEPGDVIIVLEQKPHDR---FQRQGIN--------------------- 266
++ + D + + + R + N
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 267 --LVTTETITLTEALCGFTKVIKHLDDRQLLITHP-----------------PGEVIK-- 305
L+TT +T+ L T LD + +T P EV+
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 306 PEDIKGIVGEGMPIYKN-------------------------PYEKGTLYIKFDVQFPES 340
P + I+ E + P E ++ + V FP S
Sbjct: 327 PRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPS 384
Score = 32.9 bits (74), Expect = 0.17
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 42/151 (27%)
Query: 207 GRKTLSVKKVLEVNVDKGMKE---------MQKIYFRGEGD---QQPDQEPGD--VIIVL 252
G K +L V D + + I + E D D G + L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 253 EQKPH---DRFQRQGIN-----LVT---TETITLTEALCGFTKVIKHL-DDRQLLITHPP 300
K +F + + L++ TE + + + L +D Q+
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AK 128
Query: 301 GEVIKPEDI-------------KGIVGEGMP 318
V + + K ++ +G+
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 38.9 bits (90), Expect = 0.001
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 12/49 (24%)
Query: 136 QLTKSVICSTCNGKGSK------SGATFTCASCRGCGFKIHHRII--GP 176
L + C C K G C CG + +++
Sbjct: 17 NLNIVLTCPECKVYPPKIVERFSEGDVV----CALCGLVLSDKLVDTRS 61
Score = 33.1 bits (75), Expect = 0.076
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 16/56 (28%)
Query: 175 GPNMTQQIQARCSDCQGE-GEVMNEKDR----CGSCAGRKTLSVKKVLEVN-VDKG 224
GPN+ I C +C+ +++ C C G VL VD
Sbjct: 15 GPNL--NIVLTCPECKVYPPKIVERFSEGDVVCALC-GL-------VLSDKLVDTR 60
Score = 32.3 bits (73), Expect = 0.15
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 149 KGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK--DRCGS 204
+G TC C+ KI + + + C+ C G V+++K D S
Sbjct: 14 RGPNLNIVLTCPECKVYPPKI---VERFSEGDVV---CALC---GLVLSDKLVDT-RS 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 47/295 (15%), Positives = 82/295 (27%), Gaps = 110/295 (37%)
Query: 2 ADTKLYEVLGVS---------KS-------ASDQEIKKAYRKLAKEFHPDKNPEAGDKFK 45
AD + G S + + I++ Y + E D + FK
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 46 EI-----SFAYEVLSDEKK-RATYD--------RYGI-QGIKEKAGGGGADFSDDLISQL 90
EI S+ + S++ AT + +K K G +D
Sbjct: 1709 EINEHSTSYTFR--SEKGLLSATQFTQPALTLMEKAAFEDLKSK----GLIPADAT---- 1758
Query: 91 FGGRLFGMGGPFGGHSRGRPHRGEDT--VHPLKV-SLEDLYNGKTTKLQLTKSVICSTCN 147
F GHS GE V S+E L +++
Sbjct: 1759 -----------FAGHS-----LGEYAALASLADVMSIESL-------VEVVF-------- 1787
Query: 148 GKGSKSGATFTCASCRGCGFKIHHRIIGPNMT-----------QQIQARCSDCQGEG-EV 195
G T A R + ++ +I N Q + R G E+
Sbjct: 1788 ----YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 196 MNEKDRC-GS---CAGR-----------KTLSVKKV--LEVNVDKGMKEMQKIYF 233
+N AG + ++K+ +E+ ++E++ F
Sbjct: 1844 VN--YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 31.6 bits (71), Expect = 0.47
Identities = 38/244 (15%), Positives = 61/244 (25%), Gaps = 99/244 (40%)
Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVI------CSTCN---GKGSKSGATFTCASC 162
G D +H L L T L TK +I K S S A F
Sbjct: 97 EGND-IHALAAKLL---QENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALFRAVG- 150
Query: 163 RGCGFKIHHRII----GPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLE 218
G + +++ G QG
Sbjct: 151 EG-----NAQLVAIFGG--------------QG--------------------------- 164
Query: 219 VNVDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHD--RFQRQGINLV----TTE 271
N D +E++ +Y + + + L + D + QG+N++
Sbjct: 165 -NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 272 T----------------ITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGE 315
I + L + K L PGE+ +KG G
Sbjct: 224 NTPDKDYLLSIPISCPLIGVI-QLAHYVVTAKLLG-------FTPGELR--SYLKGATGH 273
Query: 316 GMPI 319
+
Sbjct: 274 SQGL 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.005
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 19 QEIKKAYRKLAKEFHPDKNP 38
Q +KK L K + D P
Sbjct: 20 QALKKLQASL-KLYADDSAP 38
Score = 31.8 bits (71), Expect = 0.15
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 16/38 (42%)
Query: 212 SVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVI 249
++KK L+ ++ K+Y D P I
Sbjct: 21 ALKK-LQASL--------KLY-------ADDSAPALAI 42
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 32.6 bits (74), Expect = 0.15
Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
+ +L ++ ++QEI+ Y + + DK +++ IS A E S +++
Sbjct: 125 IKKGQLLQLKIAVPPPNEQEIRSWYNQ-----NKDKVGFE-IRYRIISIAPENDSIQEEN 178
Query: 61 ATYDRYGIQGIKEKAGGGGADF-------SDDLISQLFGGRL 95
Y + I++ + F +D + G +
Sbjct: 179 RLYKE--VSEIRKSILADPSSFALIAGSPRNDPALRARRGMV 218
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 32.8 bits (72), Expect = 0.19
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 132 TTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDC-Q 190
+ K +C C+ S CASC G F P + +C C
Sbjct: 466 AATFHIEKGTLCQGCHHNSPASLTPPKCASCHGKPFDADR-GDRPGLKAAYHQQCMGCHD 524
Query: 191 GEGEVMNEKDRCGSC 205
C C
Sbjct: 525 RMKIEKPANTACVDC 539
Score = 29.0 bits (62), Expect = 2.5
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 111 HRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG-----ATFTCASCRGC 165
H+ +D LK L + +L+ C C+ +K+G C SC
Sbjct: 84 HKSKDGKMSLK--FMRLDDNSAAELKEIYHANCIGCHTDLAKAGKKTGPQDGECRSCHNP 141
Query: 166 GFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSC 205
+ + R + V + + CG+C
Sbjct: 142 KPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGAC 181
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 32.4 bits (71), Expect = 0.21
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 138 TKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMN 197
+CS C+ S CASC F+ P + +C C E +V
Sbjct: 487 DALTMCSGCHHNAKPSLNPPKCASCHSKPFQERTANQ-PGLKGAFHNQCIGCHQEMQVNP 545
Query: 198 EKDRCGSC 205
+ C C
Sbjct: 546 KATDCQGC 553
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 32.1 bits (70), Expect = 0.27
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 129 NGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSD 188
+ K+ +C+ C+ S CASC G F P + +C
Sbjct: 474 DKLAGTFHTDKATVCAGCHHNSPASKTPPKCASCHGQPFDAAK-GDRPGLKAAYHQQCMG 532
Query: 189 C-QGEGEVMNEKDRCGSC 205
C C C
Sbjct: 533 CHNRMKLEKPADTACAEC 550
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 30.2 bits (69), Expect = 0.31
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 256 PHDRFQRQGINLVTTETITLTEA 278
H F G NL + EA
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPWEA 25
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A
{Escherichia coli} PDB: 2w8i_A 2w8h_A*
Length = 359
Score = 31.9 bits (72), Expect = 0.33
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 228 MQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRF-----QRQGINLVTTETITLTEAL 279
+ + +G+ Q GD++ + F +Q + +TL EAL
Sbjct: 206 LYALMQKGDLTQNHLLYHGDILFIPSNDDLKVFVMGEVGKQSTLKMDRSGMTLAEAL 262
>2l8k_A NSP7, non-structural protein 7; viral protein; NMR {Equine
arteritis virus}
Length = 123
Score = 29.8 bits (66), Expect = 0.56
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 184 ARCSDCQGEGEVMNEKDRCGS---CAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
+ DC+ MN + S R L+ ++ + + + M K+ + +
Sbjct: 18 SDVLDCRAVRSAMNLRAALTSFQVAQYRNILNASLQVDRDAARSRRLMAKL---ADFAVE 74
Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIK 287
+ GD ++V++ + + LV T + + C V+K
Sbjct: 75 QEVTAGDRVVVIDGLDRMAHFKDDLVLVPLTTKVVGGSRCTICDVVK 121
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 30.1 bits (68), Expect = 0.98
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 268 VTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMP 318
E + E I+ +D I E I+P++++ +
Sbjct: 6 TKREEQEIEEKKAQEESKIEDVDKILNDILSISSECIQPDELRVKLLLKRK 56
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 28.5 bits (63), Expect = 1.4
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 142 ICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201
C + KSG SC CG H + + + Q E
Sbjct: 6 FCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCI-----ECKS 60
Query: 202 CGSCAGRK 209
C C +
Sbjct: 61 CILCGTSE 68
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 28.6 bits (64), Expect = 2.0
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 18/69 (26%)
Query: 3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
D+K +E++ S + + Y K+ P N + +
Sbjct: 79 DSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTK---------------- 122
Query: 63 YDRYGIQGI 71
+Y ++ I
Sbjct: 123 --KYSVESI 129
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 28.9 bits (62), Expect = 2.4
Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 1/115 (0%)
Query: 92 GGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS 151
GGR M G S G H + + K K +
Sbjct: 123 GGRNVTMAQMEKGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHE 182
Query: 152 KSGATFTCASCRGCGFKIHHRIIGPNMTQQIQAR-CSDCQGEGEVMNEKDRCGSC 205
+ C C F M + + C C + + CG C
Sbjct: 183 FHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKC 237
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 29.2 bits (65), Expect = 2.5
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 129 NGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCG------FKIHHRIIGPNM 178
N K + ++ C TC+ S + TF C C CG F H + IG
Sbjct: 37 NHSVPKEKFLNTMKCGTCHEINSGA--TFMCLQCGFCGCWNHSHFLSHSKQIGHIF 90
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 26.8 bits (59), Expect = 3.9
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 134 KLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIH 170
+L + C C +G+ ++ C C F +H
Sbjct: 41 ELTRVQVYTCDKCEEEGT--IWSYHCDEC---DFDLH 72
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural
genomics, PSI-2, protein structure initiative; NMR
{Escherichia coli} SCOP: g.41.18.1
Length = 101
Score = 26.9 bits (59), Expect = 4.0
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 140 SVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK 199
+ C C + C SC +++A C DC +V+
Sbjct: 32 ELHCPQCQHVLDQDNGHARCRSCGEF--------------IEMKALCPDCHQPLQVLKA- 76
Query: 200 DRCGS 204
CG+
Sbjct: 77 --CGA 79
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal
binding site, structura genomics, PSI, protein structure
initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Length = 105
Score = 26.8 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 160 ASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGE 192
A CR CGF I P +RC C+ E
Sbjct: 68 AQCRKCGFVFKAEINIP-------SRCPKCKSE 93
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 27.6 bits (62), Expect = 4.6
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 8 EVLGVSKSASDQE-IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKK--RATY- 63
++LGVS D E +R + P D +E+S A VL+ + R T+
Sbjct: 81 QILGVS---IDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFI 137
Query: 64 -DRYGI 68
D
Sbjct: 138 VDPNNE 143
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding protein;
NMR {Helicobacter pylori}
Length = 119
Score = 27.1 bits (60), Expect = 4.9
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 179 TQQIQARCSDCQGEGEV-MNEKDRCGSCAGRKT 210
++++ C DC + + C C +
Sbjct: 69 DEKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural
genomics, PSI-2, protein structure initiative; NMR
{Salmonella typhimurium LT2}
Length = 81
Score = 26.1 bits (57), Expect = 4.9
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 17/65 (26%)
Query: 140 SVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK 199
+ C C+ ++G T C +C +QA C DC+ +V+
Sbjct: 2 EITCPVCHHALERNGDTAHCETCAKD--------------FSLQALCPDCRQPLQVLKA- 46
Query: 200 DRCGS 204
CG+
Sbjct: 47 --CGA 49
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 27.4 bits (61), Expect = 4.9
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 173 IIGPNMTQQIQARCSDCQGEGEV----MNEKDRCGSCAGRKTLSVKKVLEVNVDK 223
++G M + ++ C C +V + +CG C ++ +
Sbjct: 4 MMGAKMAESLRLTCLACGQANKVPSDRLAAGPKCGICGAGLITGKVAGIDPAILA 58
>1ofw_A 9HCC, nine-heme cytochrome C; electron transport, multiheme
cytochrome C, electron transfer, electron transpor; HET:
HEC GOL; 1.5A {Desulfovibrio desulfuricans} SCOP:
a.138.1.1 PDB: 1ofy_A* 19hc_A* 1duw_A*
Length = 296
Score = 28.0 bits (60), Expect = 4.9
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 138 TKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDC-QGEGEVM 196
++C+TC+ + S C SC + PN+ +C C +G
Sbjct: 220 KPEILCATCHHRSPLSLTPPKCGSCHTKEIDKANPGR-PNLMAAYHLQCMGCHKGMDVAR 278
Query: 197 NEKDRCGSC 205
C +C
Sbjct: 279 PRDTDCTTC 287
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide
exchange factor, signaling protein; 1.41A {Legionella
pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Length = 356
Score = 27.7 bits (61), Expect = 6.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 16 ASDQEIKKAYRKLAKEFHPDKNPEAG-DKFKEISFAYEVLSDE 57
AS EI+KA R++ + F+ P+ G +K KEI Y++ +E
Sbjct: 2 ASHPEIEKAQREIIEAFN--AKPKNGINKIKEICEQYKISPNE 42
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 26.3 bits (58), Expect = 9.0
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 20 EIKKAYRKLAKEFHP--------DKNPEAGDKF-KEISFAYEVLSDEK--KRATYDRYGI 68
+ Y +L + P D++ + ++ E + + +YGI
Sbjct: 47 ILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGI 106
Query: 69 QGI 71
GI
Sbjct: 107 TGI 109
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 26.8 bits (58), Expect = 9.3
Identities = 20/107 (18%), Positives = 30/107 (28%), Gaps = 19/107 (17%)
Query: 123 SLEDLYNGKTTKLQLTKSVICSTCN----------GKGSKSGATFTCASCRGCGFKIHHR 172
LE + +T K K IC+ C+ + G T SCR C I
Sbjct: 60 ELEAIDIYRTGKGYDKK--ICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGV 117
Query: 173 IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEV 219
+ +++ C C R + V L
Sbjct: 118 KLSSTEKKKM-------DEIAPPKGSVFTCPICEKRSIVGVTANLVH 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.408
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,507,972
Number of extensions: 349276
Number of successful extensions: 1299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 106
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.5 bits)