RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4972
(349 letters)
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 83.5 bits (206), Expect = 5e-21
Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Query: 2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG---DKFKEISFAYEVLSDEK 58
A YE+LGVSK+A ++EI+KAY++LA ++HPD+N KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 59 KRATYDRYGIQGIKE 73
KRA YD+YG ++
Sbjct: 61 KRAAYDQYGHAAFEQ 75
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 81.9 bits (202), Expect = 2e-20
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
F+R G +LV I L A+ G ++H+ L + PGEVI P K I G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 320 YKNPYEKGTLYIKFDVQFPE 339
K G L IKF ++ PE
Sbjct: 62 PKYG-GYGNLIIKFTIKDPE 80
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), insert domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 78.6 bits (193), Expect = 4e-19
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 139 KSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNE 198
K ++C C G+G K GA C SC G G K R +GP M Q+ Q C C G G++++
Sbjct: 1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDP 59
Query: 199 KDRCGSCAGRKT 210
KDRC SC G+K
Sbjct: 60 KDRCKSCNGKKV 71
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 78.4 bits (193), Expect = 6e-19
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDK------FKEISFAYEVLSDEKKR 60
++ +G++ + +++KK YRK HPDK + F E++ A+ ++ ++
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 95
Query: 61 ATY 63
Y
Sbjct: 96 PLY 98
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 77.7 bits (191), Expect = 8e-19
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
+L E+L + + +++AY++ + HPDK + +E++ + E
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR 70
Query: 63 YDRYG 67
+ G
Sbjct: 71 MNLGG 75
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 77.5 bits (190), Expect = 8e-19
Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 5/74 (6%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
Y+ LG+++ ASD+EIK+AYR+ A +HPDKN P A +KFKEI+ AY+VLSD +KR +D
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65
Query: 65 RYGIQGIKEKAGGG 78
RYG +G+K G G
Sbjct: 66 RYGEEGLK---GSG 76
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 77.8 bits (191), Expect = 1e-18
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 7 YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAYEVLSDE 57
Y +LG SA+ ++K+ Y+KL +HPDK E KF EI A+++L +E
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 58 KKRATYDRYG 67
+ + YD
Sbjct: 79 ETKKKYDLQR 88
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 77.3 bits (190), Expect = 1e-18
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
F+R G +L+ T ++ E+L GF+K I+ +D R L ++ ++P G+GMP
Sbjct: 2 FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQ--PVQPSQTSTYPGQGMPT 59
Query: 320 YKNPYEKGTLYIKFDVQFPES 340
KNP ++G L +K+ V +P S
Sbjct: 60 PKNPSQRGNLIVKYKVDYPIS 80
Score = 25.3 bits (55), Expect = 4.3
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHH 171
G+D ++ L +S ++ G + +Q T + ++ G G
Sbjct: 5 DGDDLIYTLPLSFKESLLGFSKTIQTID---GRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61
Query: 172 R 172
Sbjct: 62 N 62
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 73.1 bits (179), Expect = 3e-17
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 7 YEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNPEAGD--------KFKEISFAYEVLSD 56
+ + G+ Q + ++ L +++HPDK + I+ A++ L
Sbjct: 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63
Query: 57 EKKRATYD 64
RA Y
Sbjct: 64 PLMRAEYL 71
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 71.7 bits (175), Expect = 3e-16
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
+L ++LG+ +SA + ++KAY K KEFHPDK + +K K+++ Y+ + D K A
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAH 67
Query: 63 YDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLF 96
+G + G D + + LF
Sbjct: 68 QPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLF 101
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 70.5 bits (172), Expect = 4e-16
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 6 LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN----PEAGDKFKEISFAYEVLSDEKKRA 61
+ V+ + + E KK R+L ++HPDKN A + FK + L +K+A
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQA 74
Query: 62 TYDRYG 67
D+
Sbjct: 75 FLDQNA 80
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import
protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 53.6 bits (128), Expect = 3e-10
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPH 257
K+LEV+V+ GMK+ Q+I F+GE DQ PD PGDV+ ++ ++PH
Sbjct: 31 KILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPH 73
Score = 27.0 bits (59), Expect = 0.87
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 110 PHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTC 159
P RG+D H + SLE+LY G+T KL L + ++ G K G
Sbjct: 1 PQRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVE-PGMKDGQRIVF 49
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein
DnaJ {Escherichia coli [TaxId: 562]}
Length = 79
Score = 53.6 bits (128), Expect = 4e-10
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 130 GKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDC 189
G T ++++ C C+G G+K G ++ +Q C C
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQT----CPTCHGSGQVQMRQGFFAVQQTCPHC 56
Query: 190 QGEGEVMNEKDRCGSCAGR 208
QG G ++ KD C C G
Sbjct: 57 QGRGTLI--KDPCNKCHGH 73
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 53.4 bits (128), Expect = 5e-10
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 193 GEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIV 251
G+ + K G K +++ + G K KI ++ +GD P + V
Sbjct: 17 GKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFV 73
Query: 252 LEQKPH 257
+++K H
Sbjct: 74 IQEKSH 79
Score = 29.5 bits (66), Expect = 0.13
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSK 152
E L VSLEDL+ GK ++ +G K
Sbjct: 1 ETVQVNLPVSLEDLFVGKKKSFKIG----RKGPHGASEK 35
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate
reductase), N-terminal domain {Shewanella oneidensis
[TaxId: 70863]}
Length = 90
Score = 38.6 bits (89), Expect = 8e-05
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 139 KSVICSTCNGKGSKSGATF----TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE 194
+S C +C+ G+ S C SC G ++ + A C
Sbjct: 10 ESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLV-CADCHAVHDMNV 68
Query: 195 VMNEKDRCGSC--AGRKTLSVKK 215
K C SC GR + SV K
Sbjct: 69 GQ--KPTCESCHDDGRTSASVLK 89
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 34.7 bits (77), Expect = 0.014
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 138 TKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMN 197
K +C C+ S CASC G F P + +C C ++
Sbjct: 433 EKGTLCQGCHHNSPASLTPPKCASCHGKPFDADRG-DRPGLKAAYHQQCMGCHDRMKIEK 491
Query: 198 EKDR-CGSCAGRK 209
+ C C +
Sbjct: 492 PANTACVDCHKER 504
Score = 31.7 bits (69), Expect = 0.16
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 143 CSTCNGKGSKSG-----ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMN 197
C C+ +K+G C SC + + R + V +
Sbjct: 75 CIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGD 134
Query: 198 EKDRCGSC 205
+ CG+C
Sbjct: 135 PQKNCGAC 142
Score = 25.9 bits (54), Expect = 8.9
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 143 CSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK--- 199
C +C+ + +++ H Q C C + ++K
Sbjct: 96 CRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVW 155
Query: 200 -----DRCGSCAGRKTLSVKKVL 217
D C +C G K + + L
Sbjct: 156 GKNKEDSCRACHGEKPVDKRPAL 178
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 32.5 bits (73), Expect = 0.016
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 142 ICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201
+C C K + G + C +C GC I C +++
Sbjct: 3 LCVVCGDKAT--GYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCV---IDKVTRNQ 57
Query: 202 CGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQE 244
C C +K + V ++ +D + ++ +++ +E
Sbjct: 58 CQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREE 100
>d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory
fumarate reductase), N-terminal domain {Shewanella
frigidimarina [TaxId: 56812]}
Length = 101
Score = 29.8 bits (66), Expect = 0.14
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 16/76 (21%)
Query: 130 GKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDC 189
K T + ++ C +C+G+ ++ P+ + C+ C
Sbjct: 22 IKVTDSETHENAQCKSCHGEYAELAN--------------DKLQFDPHNSHLGDINCTSC 67
Query: 190 QGEGEVMNEKDRCGSC 205
E K C C
Sbjct: 68 HKGHEEP--KFYCNEC 81
>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 293
Score = 30.6 bits (67), Expect = 0.23
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 143 CSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDC-QGEGEVMNEKDR 201
C+TC+ + S C SC + PN+ +C C +G
Sbjct: 225 CATCHHRSPLSLTPPKCGSCHTKEIDKANP-GRPNLMAAYHLQCMGCHKGMDVARPRDTD 283
Query: 202 CGSC 205
C +C
Sbjct: 284 CTTC 287
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 28.8 bits (64), Expect = 0.55
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 323 PYEKGTLYIKFDVQFPESY 341
PY T I + ++Y
Sbjct: 60 PYRGNTYNIPICLWLLDTY 78
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia
coli [TaxId: 562]}
Length = 71
Score = 26.3 bits (58), Expect = 1.3
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 140 SVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK 199
+ C C + C SC +++A C DC +V+
Sbjct: 2 ELHCPQCQHVLDQDNGHARCRSCGE--------------FIEMKALCPDCHQPLQVLKA- 46
Query: 200 DRCGS 204
CG+
Sbjct: 47 --CGA 49
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 105
Score = 26.7 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 160 ASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGE 192
A CR CGF I P +RC C+ E
Sbjct: 68 AQCRKCGFVFKAEINIP-------SRCPKCKSE 93
>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 225
Score = 27.4 bits (61), Expect = 2.5
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDK-----NPEAGDKFKEISFAY---- 51
MADT+LY + D KA+ + N + +++ E++ +
Sbjct: 49 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG 108
Query: 52 ----EVLSDEKKRATYDRYGIQGIKEKAG 76
++ K Y Q ++++AG
Sbjct: 109 LGAAATATEAAKSGVIGNYARQTLEQEAG 137
>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL
{Pelobacter acidigallici [TaxId: 35816]}
Length = 728
Score = 27.4 bits (59), Expect = 2.9
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 42 DKFKEISF--AYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMG 99
++ IS+ A +++ E R YG I + + + MG
Sbjct: 107 SDYERISWDEATDIVVAEINR-IKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRFMNMMG 165
Query: 100 GPFGGHS 106
+ H+
Sbjct: 166 FTYADHN 172
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR
{Bacillus subtilis [TaxId: 1423]}
Length = 74
Score = 24.8 bits (54), Expect = 5.2
Identities = 5/53 (9%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 4 TKLYEVLGVSKSASDQEIKKAYRKLAKEF---------HPDKNPEAGDKFKEI 47
+ ++GV + +++ L+ + +++ K I
Sbjct: 19 EQFLRIIGVDEEKIYNDVEGIEHHLSWNSIDRIGDLVQYFEEDDARKKDLKSI 71
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella
pneumophila [TaxId: 446]}
Length = 197
Score = 26.0 bits (57), Expect = 5.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 17 SDQEIKKAYRKLAKEFHPDKNPEAGDKF-KEISFAYEVLSDEK 58
S EI+KA R++ + F + P+ G KEI Y++ +E+
Sbjct: 1 SHPEIEKAQREIIEAF--NAKPKNGINKIKEICEQYKISPNEE 41
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans,
different strains [TaxId: 876]}
Length = 118
Score = 25.2 bits (54), Expect = 6.9
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 139 KSVICSTCNGKGSKSGATFTCASCRGCGFKI-----HHRIIGPNMTQQIQARCSDCQGEG 193
+V C C+ G + GC + + + +C DC
Sbjct: 40 ATVECVQCHHTLEADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKAL 99
Query: 194 EVMNEKDRCGSCAG 207
+ + +C
Sbjct: 100 KKDKKPTGPTACGK 113
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 26.2 bits (57), Expect = 7.1
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 155 ATFTCASCRGC-----GFKI-HHRIIGPNMTQQIQARCSDCQGEGE 194
+CA C K H++ P + C +C E E
Sbjct: 255 KGVSCADCHMPYTQEGAVKYSDHKVGNP--LDNMDKSCMNCHRESE 298
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.6 bits (55), Expect = 7.6
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 23 KAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66
K+F P E + EI F + D + Y ++
Sbjct: 126 MVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQF 169
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 124
Score = 24.9 bits (54), Expect = 9.2
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 247 DVIIVLE--QKPHDRFQRQGINLVTTETITLTEAL 279
+I + GI + ++ E L
Sbjct: 67 KAVIASSPGPNAFEVLNELGIKIYRATGTSVEENL 101
>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga
maritima [TaxId: 2336]}
Length = 116
Score = 24.9 bits (54), Expect = 9.6
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 247 DVIIVLE--QKPHDRFQRQGINLVTTETITLTEAL 279
+ +I + + + G+ + E T+ EA+
Sbjct: 64 EYLIASNVGRNAFETLKAAGVKVYRFEGGTVQEAI 98
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 24.5 bits (53), Expect = 9.7
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 14 KSASDQEIKK---AYRKLAKEFHPD---KNPEAGDKFKEISFAYEVLSDEKKRATYDRY 66
S S K Y+K ++E + + ++ EI ++ +S +K
Sbjct: 2 SSGSSGPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLA 60
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli
[TaxId: 562]}
Length = 40
Score = 23.1 bits (50), Expect = 10.0
Identities = 7/29 (24%), Positives = 8/29 (27%), Gaps = 4/29 (13%)
Query: 162 CRGCGFKIHHRIIGPNMTQQIQARCSDCQ 190
C CG I + C CQ
Sbjct: 15 CERCGSIIEKTTLSSRPFY----WCPGCQ 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.408
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,357,617
Number of extensions: 68342
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 48
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)