BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4974
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 126/269 (46%), Gaps = 20/269 (7%)
Query: 73 TEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
T ++ G + + + G G + G+LG F QL + KLFT + WDP
Sbjct: 3 TSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDP--- 59
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLS 192
GYG S P R F P + E D A +L+K L KVSL GW DGG +
Sbjct: 60 ----------RGYGHSRPPDRDF-PADFFERDAKDAVDLMKALKFKKVSLLGWADGGITA 108
Query: 193 FVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARS--EVLKAYDNDVNY 250
+ + KYP +HK+VIWG +++T ++ ++EG+R +S WS R E L YD Y
Sbjct: 109 LIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYD----Y 164
Query: 251 ITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKF 310
++VD + N+ + LLP V P L+ H D +V + +K
Sbjct: 165 FARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG 224
Query: 311 CQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + G H+ H++ FN+++ +F+
Sbjct: 225 SRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 126/269 (46%), Gaps = 20/269 (7%)
Query: 73 TEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
T ++ G + + + G G + G+LG F QL + KLFT + WDP
Sbjct: 3 TSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDP--- 59
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLS 192
GYG S P R F P + E D A +L+K L KVSL GW DGG +
Sbjct: 60 ----------RGYGHSRPPDRDF-PADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITA 108
Query: 193 FVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARS--EVLKAYDNDVNY 250
+ + KYP +HK+VIWG +++T ++ ++EG+R +S WS R E L YD Y
Sbjct: 109 LIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYD----Y 164
Query: 251 ITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKF 310
++VD + N+ + LLP V P L+ H D +V + +K
Sbjct: 165 FARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG 224
Query: 311 CQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + G H+ H++ FN+++ +F+
Sbjct: 225 SRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 20/269 (7%)
Query: 73 TEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
T ++ G + + + G G + G+LG F QL + KLFT + WDP
Sbjct: 3 TSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDP--- 59
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLS 192
GYG S P R F P + E D A +L+K L KVSL GW +GG +
Sbjct: 60 ----------RGYGHSRPPDRDF-PADFFERDAKDAVDLMKALKFKKVSLLGWSNGGITA 108
Query: 193 FVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARS--EVLKAYDNDVNY 250
+ + KYP +HK+VIWG +++T ++ ++EG+R +S WS R E L YD Y
Sbjct: 109 LIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYD----Y 164
Query: 251 ITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKF 310
++VD + N+ + LLP V P L+ H D +V + +K
Sbjct: 165 FARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG 224
Query: 311 CQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + G H+ H++ FN+++ +F+
Sbjct: 225 SRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 29/220 (13%)
Query: 142 CSGYGQS----LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSM 197
C G+G+S RS + + ++ VD L + K+ L G GGH S F++
Sbjct: 74 CPGWGKSDSVVNSGSRSDLNARILKSVVD-------QLDIAKIHLLGNSMGGHSSVAFTL 126
Query: 198 KYPHMVHKLVIWGTKS-FLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDN----DVNYIT 252
K+P V KLV+ G + +++ EG++RL+ E LK + D + +T
Sbjct: 127 KWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186
Query: 253 -GIFNQYV-------DMVNLIFKSYGRNVYQ-----ELLPYVDVPVLVFHSADDVMVSTQ 299
+F + D + KS N Q L + L+ +D V
Sbjct: 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMD 246
Query: 300 QVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
LL+ + + + F GH +H FN++ NF+
Sbjct: 247 AGLRLLSGIAGSELHIFRDCGHWAQWEHADAFNQLVLNFL 286
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 171 LLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVF-----EG 225
L LG+ +V L G GG + F++ YP +LV+ G ++ +F EG
Sbjct: 99 LFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGL----SINLFAPDPTEG 154
Query: 226 MRRLSNWSPMARSEVLKA------YDN--------DVNYITGIFNQYVDMVNLIFKSYGR 271
++RLS +S E L+A YD D + + + + KS+
Sbjct: 155 VKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAG 214
Query: 272 NVYQELLPYVDV-----PVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIK 326
++ + + +V PVL+ +D + L + Q + F GH ++
Sbjct: 215 ADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALKTIPRAQLHVFGQCGHWVQVE 274
Query: 327 HGQVFNEISRNFI 339
FN+++ F+
Sbjct: 275 KFDEFNKLTIEFL 287
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 171 LLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVF-----EG 225
L LG+ +V L G GG + F++ YP +LV+ G ++ +F EG
Sbjct: 119 LFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGL----SINLFAPDPTEG 174
Query: 226 MRRLSNWSPMARSEVLKA------YDN--------DVNYITGIFNQYVDMVNLIFKSYGR 271
++RLS +S E L+A YD D + + + + KS+
Sbjct: 175 VKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAG 234
Query: 272 NVYQELLPYVDV-----PVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIK 326
++ + + +V PVL+ +D + L + Q + F GH ++
Sbjct: 235 ADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALKTIPRAQLHVFGQCGHWVQVE 294
Query: 327 HGQVFNEISRNFI 339
FN+++ F+
Sbjct: 295 KFDEFNKLTIEFL 307
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 165 VDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGT 211
D E+++ LG+ +FGW GGH+ +YP M L+I GT
Sbjct: 81 ADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM-RGLMITGT 126
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 20/177 (11%)
Query: 179 KVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNW--SPMA 236
KVS+ G GG S+ + +V+ LV+ G+ + V + E +R + N+ +
Sbjct: 107 KVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLV----VEIHEDLRPIINYDFTREG 162
Query: 237 RSEVLKAYDND------------VNYIT--GIFNQYVDMVNLIFKSYGRNVYQELLPYVD 282
++KA ND Y T YV + I + G E + V
Sbjct: 163 MVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQ 222
Query: 283 VPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
VP LV DD +V + L+ + Y GH I+H + F + +F+
Sbjct: 223 VPTLVVQGKDDKVVPVETAYKFLDLIDDSWGYIIPHCGHWAMIEHPEDFANATLSFL 279
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 165 VDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGT 211
D E+++ LG+ +FGW GGH+ +YP M L+I GT
Sbjct: 81 ADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM-RGLMITGT 126
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 165 VDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGT 211
D E+++ LG+ +FGW GGH+ +YP M L+I GT
Sbjct: 81 ADAMTEVMQQLGIADAVVFGWGLGGHIGIEMIARYPEM-RGLMITGT 126
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 169 YELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVI 208
+ LL+ LGV + S+ G GG L+ +++ YP V +LV+
Sbjct: 105 HALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVL 144
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 17/181 (9%)
Query: 170 ELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTID-NVR----VFE 224
+ L L + K + G GG + P + KLV +D +VR +F
Sbjct: 73 DTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLV---AIDIAPVDYHVRRHDEIFA 129
Query: 225 GMRRLSNWSPMARSE---VLKAYDNDVNYITGIFNQYVD-----MVNLIFKSYGRNVYQE 276
+ +S R + +++ + N+ I + +VD V +++ Y V E
Sbjct: 130 AINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWE 189
Query: 277 LLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHI-KHGQVFNEIS 335
+P D P L + VS Q LL Q + + + GH H K V I
Sbjct: 190 KIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIR 249
Query: 336 R 336
R
Sbjct: 250 R 250
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 274 YQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKH 327
++E L V VP L+ ADD++ + + L + Q + GH H+ H
Sbjct: 202 HREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSH 255
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 35/246 (14%)
Query: 79 IKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLL 138
++ ++R + G+G ++LF +G G ++++ L F VVLY L
Sbjct: 7 LEALNVRVV--GTGDRILFLAHG-FGTDQSAWHLILPYFTQNY----------RVVLYDL 53
Query: 139 GKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMK 198
C+G P F + ++ VD ++ LG+ + G + + S++
Sbjct: 54 --VCAGSVN--PDYFDFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIR 109
Query: 199 YPHMVHKLVIWG-TKSFLTIDNV----------RVFEGMRR-----LSNWSPMARSEVLK 242
P + KL++ G + FL ++ +VF M + ++P+A +
Sbjct: 110 RPELFSKLILIGFSPRFLNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVP 169
Query: 243 AYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQ 302
A + + +FN D+ + ++ + + +L V VP V +A DV V +
Sbjct: 170 AAVRE--FSRTLFNMRPDISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAE 227
Query: 303 SLLNQL 308
L + L
Sbjct: 228 YLRSHL 233
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 17/174 (9%)
Query: 177 VCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTID-NVR----VFEGMRRLSN 231
+ K + G GG + P + KLV +D +VR +F + +S
Sbjct: 80 IDKATFIGHSMGGKAVMALTALAPDRIDKLV---AIDIAPVDYHVRRHDEIFAAINAVSE 136
Query: 232 WSPMARSE---VLKAYDNDVNYITGIFNQYVD-----MVNLIFKSYGRNVYQELLPYVDV 283
R + +++ + N+ I + +VD V +++ Y V E +P D
Sbjct: 137 SDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDH 196
Query: 284 PVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHI-KHGQVFNEISR 336
P L + VS Q LL Q + + + GH H K V I R
Sbjct: 197 PALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRR 250
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 33/235 (14%)
Query: 90 GSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQSL 149
GSG +VL +G G ++++ + L F+ VVLY L C+G
Sbjct: 17 GSGERVLVLAHG-FGTDQSAWNRILP----------FFLRDYRVVLYDL--VCAGSVN-- 61
Query: 150 PKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIW 209
P F + ++ VD +L LG+ + G + + S++ P + KL++
Sbjct: 62 PDFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILI 121
Query: 210 G-TKSFLTIDNV----------RVFEGMRR-----LSNWSPMARSEVLKAYDNDVNYITG 253
G + FL ++ +VF M ++ ++P+A + A + +
Sbjct: 122 GASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVRE--FSRT 179
Query: 254 IFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL 308
+FN D+ + ++ + + +L V VP +F +A D V L N L
Sbjct: 180 LFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHL 234
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 274 YQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNE 333
Y+ LL + P L+F SA D + S + Q + Q + GH H +
Sbjct: 210 YRSLLEDISTPALIFQSAKDSLASPEVGQYXAENIPNSQLELIQAEGHCLHXTDAGLITP 269
Query: 334 ISRNFILEENKT 345
+ +FI + N+T
Sbjct: 270 LLIHFI-QNNQT 280
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 33/235 (14%)
Query: 90 GSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQSL 149
GSG +VL +G G ++++ + L F+ VVLY L C+G
Sbjct: 17 GSGERVLVLAHG-FGTDQSAWNRILP----------FFLRDYRVVLYDL--VCAGSVN-- 61
Query: 150 PKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIW 209
P F + ++ VD +L LG+ + G + + S++ P + KL++
Sbjct: 62 PDFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILI 121
Query: 210 G-TKSFLTIDNV----------RVFEGMRR-----LSNWSPMARSEVLKAYDNDVNYITG 253
G + FL ++ +VF M ++ ++P+A + A + +
Sbjct: 122 GASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVRE--FSRT 179
Query: 254 IFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL 308
+FN D+ + ++ + + +L V VP +F +A D V L N L
Sbjct: 180 LFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHL 234
>pdb|1FCQ|A Chain A, Crystal Structure (Monoclinic) Of Bee Venom Hyaluronidase
pdb|1FCU|A Chain A, Crystal Structure (Trigonal) Of Bee Venom Hyaluronidase
pdb|1FCV|A Chain A, Crystal Structure Of Bee Venom Hyaluronidase In Complex
With Hyaluronic Acid Tetramer
pdb|2J88|A Chain A, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 350
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 88 KYGSGAQVLFFTYGVLGEIRNSFKKQLTA--FDPKLFTSIFWDPPGNVV 134
KYG + + YG+L + F+ + A +DP +F ++ DP GNVV
Sbjct: 24 KYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFPALLKDPNGNVV 72
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 281 VDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFN 332
+ PV + ++DD++V T L L Q GGH+C++ + FN
Sbjct: 199 IRCPVQIICASDDLLVPTACSSELHAALPDSQKXVXPYGGHACNVTDPETFN 250
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 145 YGQSLPKG-----RSFVPFQYIEEDVDIAYELLKLL----GV--CKVSLFGWCDGGHLSF 193
YG+SLP G R +E+ + ELL+ L G FG GG LS
Sbjct: 87 YGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSA 146
Query: 194 VFSMKYPHMV 203
MKYPH+V
Sbjct: 147 YLRMKYPHLV 156
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 66 FIHQDVFTEGFFSIKGCDIRFI---KY--GSGAQVLFFTYGVLGEIRNSFKKQLTAFDPK 120
+ Q V GF ++K + R++ KY +G +LF+T G G+I
Sbjct: 7 YFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYT-GNEGDIIWFCNN-------- 57
Query: 121 LFTSIFWDPPGNVVLYLLGKTCSGYGQSLP------KGRSFVPFQYIEEDVDIAYELLKL 174
T WD + L+ YG+SLP K + F E+ + EL+K
Sbjct: 58 --TGFMWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKH 115
Query: 175 LGVC-------KVSLFGWCDGGHLSFVFSMKYPHMV 203
L V G GG L+ F MKYPHMV
Sbjct: 116 LKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMV 151
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 9 RLSGGVFLCSFDFIPRTMSGKVKRKDLVKKILENQGSQKTYGLQETLLDTQLPSRTDFIH 68
RL G L FD T+S +KDL+ Q ++G L+T T F
Sbjct: 230 RLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFK 289
Query: 69 Q--DVFTEGFFSIKGCDIRFIKYGSGAQVLFF 98
+ +VF + F + G ++ F + S ++ F
Sbjct: 290 EISEVFPDQFIHLGGDEVEFKCWESNPKIQDF 321
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 9 RLSGGVFLCSFDFIPRTMSGKVKRKDLVKKILENQGSQKTYGLQETLLDTQLPSRTDFIH 68
RL G L FD T+S +KDL+ Q ++G L+T T F
Sbjct: 230 RLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFK 289
Query: 69 Q--DVFTEGFFSIKGCDIRFIKYGSGAQVLFF 98
+ +VF + F + G ++ F + S ++ F
Sbjct: 290 EISEVFPDQFIHLGGDEVEFKCWESNPKIQDF 321
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 9 RLSGGVFLCSFDFIPRTMSGKVKRKDLVKKILENQGSQKTYGLQETLLDTQLPSRTDFIH 68
RL G L FD T+S +KDL+ Q ++G L+T T F
Sbjct: 238 RLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFK 297
Query: 69 Q--DVFTEGFFSIKGCDIRFIKYGSGAQVLFF 98
+ +VF + F + G ++ F + S ++ F
Sbjct: 298 EISEVFPDQFIHLGGDEVEFKCWESNPKIQDF 329
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 284 PVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFILEE 342
PVL+ H D V + + Q K C+ H C+ H ++ E + F+LE+
Sbjct: 191 PVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTH-CYDHHLELVTEAVKEFMLEQ 248
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 9 RLSGGVFLCSFDFIPRTMSGKVKRKDLVKKILENQGSQKTYGLQETLLDTQLPSRTDFIH 68
RL G L FD T+S +KDL+ Q ++G L+T T F
Sbjct: 279 RLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFK 338
Query: 69 Q--DVFTEGFFSIKGCDIRFIKYGSGAQVLFF 98
+ +VF + F + G ++ F + S ++ F
Sbjct: 339 EISEVFPDQFIHLGGDEVEFKCWESNPKIQDF 370
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 207 VIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIF 266
I G +S T+D ++++ +P+A L+ D+N IT I + + NL +
Sbjct: 108 AIAGLQSIKTLDLTST-----QITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQY 161
Query: 267 KSYGRNVYQELLPYVDVPVLVFHSADDVMVS 297
S G N +L P ++ L ADD +S
Sbjct: 162 LSIGNNQVNDLTPLANLSKLTTLRADDNKIS 192
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 145 YGQSLPKG-----RSFVPFQYIEEDVDIAYELLKLL----GV--CKVSLFGWCDGGHLSF 193
YG+SLP G R +E+ + ELL+ L G FG GG LS
Sbjct: 84 YGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGXLSA 143
Query: 194 VFSMKYPHMV 203
KYPH+V
Sbjct: 144 YLRXKYPHLV 153
>pdb|1X52|A Chain A, Solution Structures Of The C-Terminal Domain Of The Human
Pelota Homolog (Cgi-17)
Length = 124
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 27 SGKVKRKDLVKKILENQGSQKTYGLQET-------LLDTQLPSRTDFIHQDVFTEGFFSI 79
+G+VK D K+L+++ + YGL++ +DT L S F HQDV T + +
Sbjct: 19 AGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRY-V 77
Query: 80 KGCDIRFIKYGSGAQVLFFTYGVLGE 105
+ D +K +G +F + V GE
Sbjct: 78 RLVD--SVKENAGTVRIFSSLHVSGE 101
>pdb|3J17|A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1058
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 172 LKLLGVCKVSLFGWCDGGHLSFVFSMKYP-------HMVHKLVIWGTKSFLTIDNVRVFE 224
L+LLG + F D GH F +KYP ++ L W L +VR +
Sbjct: 51 LRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLL--HVRSED 108
Query: 225 GMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQEL-----LP 279
R NW +L Y NY T + V+ ++ S ++ + + +
Sbjct: 109 NTLRY-NW-------MLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGID 160
Query: 280 YVDVPVLVFHSADD 293
Y+D+P+ + DD
Sbjct: 161 YIDIPITNSNIFDD 174
>pdb|3IZ3|A Chain A, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZX|A Chain A, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1058
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 172 LKLLGVCKVSLFGWCDGGHLSFVFSMKYP-------HMVHKLVIWGTKSFLTIDNVRVFE 224
L+LLG + F D GH F +KYP ++ L W L +VR +
Sbjct: 51 LRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLL--HVRSED 108
Query: 225 GMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQEL-----LP 279
R NW +L Y NY T + V+ ++ S ++ + + +
Sbjct: 109 NTLRY-NW-------MLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGID 160
Query: 280 YVDVPVLVFHSADD 293
Y+D+P+ + DD
Sbjct: 161 YIDIPITNSNIFDD 174
>pdb|3CNF|T Chain T, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
Length = 1057
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 172 LKLLGVCKVSLFGWCDGGHLSFVFSMKYP-------HMVHKLVIWGTKSFLTIDNVRVFE 224
L+LLG + F D GH F +KYP ++ L W L +VR +
Sbjct: 51 LRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLL--HVRSED 108
Query: 225 GMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQEL-----LP 279
R NW +L Y NY T + V+ ++ S ++ + + +
Sbjct: 109 NTLRY-NW-------MLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGID 160
Query: 280 YVDVPVLVFHSADD 293
Y+D+P+ + DD
Sbjct: 161 YIDIPITNSNIFDD 174
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 106 IRNSFKKQLTAFDPKLFTSIFWDPP------GNVVLYLLGKTCSGYGQSLPKGRSFVPFQ 159
+ +S ++ + F FTS WD + + G+G+S + +
Sbjct: 22 VTDSNRRSIALFHGYSFTSXDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRG 81
Query: 160 YIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLV 207
++ + + LK GV + + G GG +++YP +V ++
Sbjct: 82 DLKHAAEFIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGII 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,578,858
Number of Sequences: 62578
Number of extensions: 447466
Number of successful extensions: 1294
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 43
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)