RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4974
(345 letters)
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 157 bits (400), Expect = 1e-46
Identities = 79/267 (29%), Positives = 125/267 (46%), Gaps = 16/267 (5%)
Query: 73 TEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
T ++ G + + + G G + G+LG F QL + KLFT + WDP G
Sbjct: 3 TSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRG- 61
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLS 192
YG S P R F P + E D A +L+K L KVSL GW DGG +
Sbjct: 62 ------------YGHSRPPDRDF-PADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITA 108
Query: 193 FVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYIT 252
+ + KYP +HK+VIWG +++T ++ ++EG+R +S WS R + Y D Y
Sbjct: 109 LIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYD--YFA 166
Query: 253 GIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQ 312
++VD + N+ + LLP V P L+ H D +V + +K +
Sbjct: 167 RTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSR 226
Query: 313 YYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ G H+ H++ FN+++ +F+
Sbjct: 227 LHLMPEGKHNLHLRFADEFNKLAEDFL 253
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 81.7 bits (202), Expect = 4e-18
Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 14/200 (7%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMV 203
G+G + P + + DV YE LK G K+++ G GG S P +
Sbjct: 53 GHGVPPEELVHTGPDDWWQ-DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP--I 109
Query: 204 HKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVN 263
+V ++ + + + + + +
Sbjct: 110 EGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQE 169
Query: 264 LIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLK--FCQYYQFSSGGH 321
LI +V ++ L + P V + D M++ + N+++ Q + GH
Sbjct: 170 LI-----ADV-RDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQSGH 223
Query: 322 SCHI--KHGQVFNEISRNFI 339
+ + Q+ +I F+
Sbjct: 224 VITLDQEKDQLHEDI-YAFL 242
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 77.7 bits (192), Expect = 7e-17
Identities = 36/266 (13%), Positives = 91/266 (34%), Gaps = 29/266 (10%)
Query: 81 GCDIRFIKYGSGA--QVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLL 138
+ ++ G+ L F +G F + + + I D G
Sbjct: 2 NAMLHYVHVGNKKSPNTLLFVHGSGCN-LKIFGELEKYL--EDYNCILLDLKG------- 51
Query: 139 GKTCSGYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSM 197
+G+S + + YI+ + ++L G+ GG + ++
Sbjct: 52 ------HGESKGQCPSTV--YGYIDNVANFITNSEVTKHQKNITLIGYSMGGAIVLGVAL 103
Query: 198 KYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQ 257
K V K+V + + E + + + + +L+ N ++ + +
Sbjct: 104 KKLPNVRKVVSLSGGARFDKLDKDFMEKIYH----NQLDNNYLLECIGGIDNPLSEKYFE 159
Query: 258 YVDMVNLI----FKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQY 313
++ I + + L +D+PV + D+++ + + + +++ +
Sbjct: 160 TLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVENSEL 219
Query: 314 YQFSSGGHSCHIKHGQVFNEISRNFI 339
F +G H + + + E +NFI
Sbjct: 220 KIFETGKHFLLVVNAKGVAEEIKNFI 245
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 78.6 bits (194), Expect = 9e-17
Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 46/289 (15%)
Query: 72 FTEGFFSIKGCDIRFIKYGSGAQVLF---FTYGVLGEIRNSFKKQLTAFDPKLFTSIFWD 128
+ E F + G + R+++ G G V+ G E +++ + + I D
Sbjct: 16 YVERFVNAGGVETRYLEAGKGQPVILIHGGGAGAESE--GNWRNVIPILARH-YRVIAMD 72
Query: 129 PPGNVVLYLLGKTCSGYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGV-CKVSLFGWC 186
G +G++ + +Y + + ++ +K + KVS+ G
Sbjct: 73 MLG-------------FGKT-----AKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNS 114
Query: 187 DGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARS--EVLKAY 244
GG S+ + +V+ LV+ G+ + + E +R + N+ ++KA
Sbjct: 115 MGGATGLGVSVLHSELVNALVLMGSAGLVV----EIHEDLRPIINYDFTREGMVHLVKAL 170
Query: 245 DNDVNYIT--------------GIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHS 290
ND I YV + I + G E + V VP LV
Sbjct: 171 TNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQG 230
Query: 291 ADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
DD +V + L+ + Y GH I+H + F + +F+
Sbjct: 231 KDDKVVPVETAYKFLDLIDDSWGYIIPHCGHWAMIEHPEDFANATLSFL 279
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 74.7 bits (184), Expect = 1e-15
Identities = 44/298 (14%), Positives = 88/298 (29%), Gaps = 54/298 (18%)
Query: 72 FTEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPG 131
+T + G G L T+ E ++ F ++ + G
Sbjct: 3 WTTNIIKTPRGKFEYFLKGEG-PPLCVTHL-YSEYNDNGNTFANPF-TDHYSVYLVNLKG 59
Query: 132 NVVLYLLGKTCSGYGQS-LPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFGWCDGG 189
G S K S +Y + E + + + L + K G GG
Sbjct: 60 -------------CGNSDSAKNDS----EYSMTETIKDLEAIREALYINKWGFAGHSAGG 102
Query: 190 HLSFVFSMKYPHMVHKLVIWGTKSF---------------------------LTIDNVRV 222
L+ V++ + + K+++ G + L D+
Sbjct: 103 MLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQ 162
Query: 223 FEGMRRLSNWSPM--ARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPY 280
E W+ M E L+ N + N+ + +K Y ++ L +
Sbjct: 163 EERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYD---VRQKLKF 219
Query: 281 VDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNF 338
V +P ++ DV + N + +F H+ ++ FN+ +
Sbjct: 220 VKIPSFIYCGKHDVQCPYIFSCEIANLIPNATLTKFEESNHNPFVEEIDKFNQFVNDT 277
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 70.9 bits (174), Expect = 3e-14
Identities = 34/277 (12%), Positives = 81/277 (29%), Gaps = 35/277 (12%)
Query: 79 IKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAF-DPKLFTSIFWDPPGNVVLYL 137
+ +I + GSG + F +G+ + ++ + + I+ D PG
Sbjct: 8 LTRSNISYFSIGSG-TPIIFLHGLSLDKQS-TCLFFEPLSNVGQYQRIYLDLPG------ 59
Query: 138 LGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSM 197
G S P P + + +++G + L+G GG+L+ +
Sbjct: 60 -------MGNSDPIS----PSTSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAF 108
Query: 198 KYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSN--WSPMARSEVLKAYDNDVNYITGIF 255
+ + + + L + +V +
Sbjct: 109 HLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQAW 168
Query: 256 NQYVDMVNLIFKSYGRNVYQELLPYV-------------DVPVLVFHSADDVMVSTQQVQ 302
+ Y +++ + + +L P + +D +V Q+
Sbjct: 169 HDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQL 228
Query: 303 SLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
L+N + + + GH+ I + F+
Sbjct: 229 KLINHNENGEIVLLNRTGHNLMIDQREAVGFHFDLFL 265
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 70.1 bits (172), Expect = 7e-14
Identities = 58/281 (20%), Positives = 103/281 (36%), Gaps = 38/281 (13%)
Query: 80 KGCDIRFIKYGSGAQVLFFTYGVLGEIRN--SFKKQLTAFDPKLFTSIFWDPPGNVVLYL 137
K I F G G + + +G +F + + + I D PG
Sbjct: 23 KTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPG------ 76
Query: 138 LGKTCSGYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFS 196
+G+S V + + I ++ L + K+ L G GGH S F+
Sbjct: 77 -------WGKSDS----VVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFT 125
Query: 197 MKYPHMVHKLVIWGTKSF-LTIDNVRVFEGMRRLSNWSPMARSEVLKAYDN----DVNYI 251
+K+P V KLV+ G + +++ EG++RL+ E LK + D + +
Sbjct: 126 LKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDL 185
Query: 252 TG-IFNQYVDMVNL-------IFKSYGRNV-----YQELLPYVDVPVLVFHSADDVMVST 298
T +F ++ + KS N + L + L+ +D V
Sbjct: 186 TDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPM 245
Query: 299 QQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
LL+ + + + F GH +H FN++ NF+
Sbjct: 246 DAGLRLLSGIAGSELHIFRDCGHWAQWEHADAFNQLVLNFL 286
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 69.4 bits (170), Expect = 8e-14
Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 14/204 (6%)
Query: 152 GRSF--VPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIW 209
G S Y D+ + L L + K + G GG + P + KLV
Sbjct: 54 GLSPREPVMNYPAMAQDLV-DTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAI 112
Query: 210 GT--KSFLTIDNVRVFEGMRRLSNWSPMARSEV---LKAYDNDVNYITGIFNQYVDM--- 261
+ + +F + +S R + ++ + N+ I + +VD
Sbjct: 113 DIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWR 172
Query: 262 --VNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSG 319
V +++ Y V E +P D P L + VS Q LL Q + + +
Sbjct: 173 FNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGA 232
Query: 320 GHSCHIKHGQVFNEISRNFILEEN 343
GH H + R + L ++
Sbjct: 233 GHWVHAEKPDAVLRAIRRY-LNDH 255
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 69.3 bits (170), Expect = 1e-13
Identities = 49/291 (16%), Positives = 95/291 (32%), Gaps = 52/291 (17%)
Query: 76 FFSIKGCDIRFIKYGSGAQVLF---FTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
G + G G V+ GV +++ + A + I D G
Sbjct: 9 SILAAGVLTNYHDVGEGQPVILIHGSGPGVSAYA--NWRLTIPALSKF-YRVIAPDMVG- 64
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFGWCDGGHL 191
+G + + Y + VD ++ L + K + G GG L
Sbjct: 65 ------------FGFTDRP----ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGL 108
Query: 192 SFVFSMKYPHMVHKLVI---WGTKSFLTIDNVRVFEGMRRLSNWSPMARS--EVLKAYDN 246
+ +++Y V ++V+ GT+ +T EG+ + ++P + +L +
Sbjct: 109 AIATALRYSERVDRMVLMGAAGTRFDVT-------EGLNAVWGYTPSIENMRNLLDIFAY 161
Query: 247 DVNYIT--------------GIFNQYVDMVNLIFKSYGRNV--YQELLPYVDVPVLVFHS 290
D + +T G + M + + + E + + L+ H
Sbjct: 162 DRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHG 221
Query: 291 ADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFILE 341
+D +V L + Q + F GH I+ FN + F E
Sbjct: 222 REDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFFNE 272
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 67.9 bits (166), Expect = 3e-13
Identities = 30/212 (14%), Positives = 61/212 (28%), Gaps = 19/212 (8%)
Query: 132 NVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHL 191
V L L G+G + F V+ Y LK + + G GG L
Sbjct: 69 TVCLPRL----KGHGTH-YEDMERTTFHDWVASVEEGYGWLKQRC-QTIFVTGLSMGGTL 122
Query: 192 SFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYI 251
+ + +P + + I + G L + S++ ++ Y
Sbjct: 123 TLYLAEHHPDICGIVPINA--AVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYE 180
Query: 252 TGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL--K 309
+ + L+ + L + P L+F S +D +V + +
Sbjct: 181 KTPTASLLQLARLM-----AQT-KAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISST 234
Query: 310 FCQYYQFSSGGH--SCHIKHGQVFNEISRNFI 339
+ + + H + + F
Sbjct: 235 EKEIVRLRNSYHVATLDYDQPMIIERSLE-FF 265
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 67.7 bits (166), Expect = 4e-13
Identities = 52/277 (18%), Positives = 91/277 (32%), Gaps = 40/277 (14%)
Query: 89 YGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQS 148
G G + + +G G +N ++ L K FT I +D G GQS
Sbjct: 24 TGGGEKTVLLAHG-FGCDQNMWRFMLPEL-EKQFTVIVFDYVG-------------SGQS 68
Query: 149 LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVI 208
+ S + +E E+L L + VS+ G ++ + S + + +
Sbjct: 69 DLESFSTKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITM 128
Query: 209 WGT---KSFLTIDNV-----RVFEGMRRL--SNWSPMARSEVLKAYDND-----VNYITG 253
D V E + L N+ A + ++G
Sbjct: 129 ICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASHSSELIGELSG 188
Query: 254 IFNQ-----YVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL 308
F F S Y+ LL + P L+F SA D + S + Q + +
Sbjct: 189 SFCTTDPIVAKTFAKATFFS----DYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENI 244
Query: 309 KFCQYYQFSSGGHSCHIKHGQVFNEISRNFILEENKT 345
Q + GH H+ + + +F ++ N+T
Sbjct: 245 PNSQLELIQAEGHCLHMTDAGLITPLLIHF-IQNNQT 280
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 66.2 bits (162), Expect = 2e-12
Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 29/219 (13%)
Query: 144 GYGQSLPKGRSFVPFQYIEED-VDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHM 202
GYG S + L LG+ +V L G GG + F++ YP
Sbjct: 75 GYGHSDKR----AEHGQFNRYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPAR 130
Query: 203 VHKLVIWGTKSF-LTIDNVRVFEGMRRLSNWSPMARSEVLKA------YDNDVNYITG-I 254
+LV+ G + + EG++RLS +S E L+A YD ++ IT +
Sbjct: 131 AGRLVLMGPGGLSINLFAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNL--ITPEL 188
Query: 255 FNQYVDMVNL---------IFKSYGRNVYQ-----ELLPYVDVPVLVFHSADDVMVSTQQ 300
+Q + + + KS+ ++ + + PVL+ +D +
Sbjct: 189 VDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDG 248
Query: 301 VQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
L + Q + F GH ++ FN+++ F+
Sbjct: 249 ALVALKTIPRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 287
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 63.8 bits (155), Expect = 9e-12
Identities = 27/273 (9%), Positives = 61/273 (22%), Gaps = 39/273 (14%)
Query: 86 FIKYGSGAQVLFFTYGV-LGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTCSG 144
+ + G F G ++F + + D P
Sbjct: 34 YTCHREGNPCFVFLSGAGFFSTADNFANIIDKLPDS-IGILTIDAPN------------- 79
Query: 145 YGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVH 204
G S ++ V + + + + L GG + +
Sbjct: 80 SGYSPVSNQANVGLRDWVNAI---LMIFEHFKFQSYLLCVHSIGGFAALQIMNQSSKACL 136
Query: 205 KLVIWGTKSFLTIDN--------------VRVFEGMRRLSNWSPMAR----SEVLKAYDN 246
+ + + ++ RL+ ++R S+ K
Sbjct: 137 GFIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWR 196
Query: 247 DVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLN 306
+Y N + + + + +P +VF + LN
Sbjct: 197 GYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISEKIPSIVFSESFR--EKEYLESEYLN 254
Query: 307 QLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + H H E +
Sbjct: 255 KHTQTKLILC-GQHHYLHWSETNSILEKVEQLL 286
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 62.7 bits (153), Expect = 2e-11
Identities = 40/278 (14%), Positives = 89/278 (32%), Gaps = 45/278 (16%)
Query: 90 GSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQS- 148
QVL F +G L + ++ + F + I D PG +G+
Sbjct: 13 VETNQVLVFLHGFLSD-SRTYHNHIEKFTDN-YHVITIDLPG-------------HGEDQ 57
Query: 149 LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVI 208
++ + + +L ++LFG+ GG ++ +++ + L++
Sbjct: 58 SSMDETW----NFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLIL 113
Query: 209 WGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKS 268
T + + E + + ++ + ND +F +++ I
Sbjct: 114 ESTSPGIK-EEANQLERRLVDDARAKVLDIAGIELFVNDW-EKLPLFQSQLELPVEIQHQ 171
Query: 269 YGRNVYQ----------------------ELLPYVDVPVLVFHSADDVMVSTQQVQSLLN 306
+ L + VP L+ D Q + + N
Sbjct: 172 IRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKF-VQIAKKMAN 230
Query: 307 QLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFILEENK 344
+ + S+ GH+ H++ F+ + F+ EE
Sbjct: 231 LIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKEEQN 268
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 62.6 bits (153), Expect = 2e-11
Identities = 45/285 (15%), Positives = 86/285 (30%), Gaps = 39/285 (13%)
Query: 75 GFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVV 134
G + GSG + F G G ++ + AF+ I +D G
Sbjct: 2 GHMTSILSRNHVKVKGSGKASIMFAPG-FGCDQSVWNAVAPAFEED-HRVILFDYVG--- 56
Query: 135 LYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFV 194
G S + +Q ++ ++ + L + + G G + +
Sbjct: 57 ----------SGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGML 106
Query: 195 FSMKYPHMVHKLVIWGT---KSFLTIDNVR-----VFEGMRRL--SNWSPMARSEVLKAY 244
S++ P + LV+ G + G+ + N+ A
Sbjct: 107 ASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVL 166
Query: 245 DND-----VNYITGIFNQ-----YVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDV 294
+ + F F S R E L V VP L+ ADD+
Sbjct: 167 NQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHR----EDLSKVTVPSLILQCADDI 222
Query: 295 MVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + + L + Q + GH H+ H ++ +++
Sbjct: 223 IAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYL 267
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 62.3 bits (152), Expect = 2e-11
Identities = 36/220 (16%), Positives = 66/220 (30%), Gaps = 25/220 (11%)
Query: 144 GYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYP 200
G+GQS P+ ++ V+ L+ G+ K + G GG ++ ++ P
Sbjct: 68 GFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSM--GGAVTLQLVVEAP 125
Query: 201 HMVHKLVIWGT------------KSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDV 248
K+ + G+ L R L + + E + V
Sbjct: 126 ERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTPYRELIHSF-VYDPENFPGMEEIV 184
Query: 249 NYITGIFNQ--YVDMVNLIFKSYGRNV-----YQELLPYVDVPVLVFHSADDVMVSTQQV 301
+ N + ++F+S + L + VLVFH D +V
Sbjct: 185 KSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDTS 244
Query: 302 QSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFILE 341
L LK + GH ++ +
Sbjct: 245 LYLTKHLKHAELVVLDRCGHWAQLERWDAMGPMLMEHFRA 284
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 62.4 bits (152), Expect = 3e-11
Identities = 50/311 (16%), Positives = 98/311 (31%), Gaps = 50/311 (16%)
Query: 54 TLLDTQLPSRTDFIHQDVFTEGFFSIKGCDIRFIKYGSGAQVLF---FTYGVLGEIRNSF 110
T L S+ F+ +I + + G+G V+ G G +++
Sbjct: 2 TALTESSTSK--FV-----KINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGW--SNY 52
Query: 111 KKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYE 170
+ + F + I D PG + +S + Q +
Sbjct: 53 YRNVGPFVDAGYRVILKDSPG-------------FNKS---DAVVMDEQRGLVNARAVKG 96
Query: 171 LLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFL-TIDNVRVFEGMRRL 229
L+ L + + L G GG + F+++YP + KL++ G ++ EG++ L
Sbjct: 97 LMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLL 156
Query: 230 SNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRN----------------- 272
E LK Y + + +++ +++ R
Sbjct: 157 FKLYAEPSYETLKQMLQVFLYDQSLITE--ELLQGRWEAIQRQPEHLKNFLISAQKAPLS 214
Query: 273 --VYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQV 330
L + + DD V LL + + + FS G +H
Sbjct: 215 TWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGAWAQWEHADE 274
Query: 331 FNEISRNFILE 341
FN + +F+
Sbjct: 275 FNRLVIDFLRH 285
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 61.1 bits (148), Expect = 6e-11
Identities = 26/202 (12%), Positives = 49/202 (24%), Gaps = 21/202 (10%)
Query: 144 GYGQSLP-KGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHM 202
G+G P + + A + KV +FG GG + P +
Sbjct: 59 GHGTVEPLDILTKGNPDIWWAESSAAVAHMTAKYA-KVFVFGLSLGGIFAMKALETLPGI 117
Query: 203 VHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMV 262
V V F N E + + I +
Sbjct: 118 TAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTV- 176
Query: 263 NLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL---KFCQYYQFSSG 319
L V P + + D +V + L + L ++ +
Sbjct: 177 ------------AADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINAARVDFHWYDDA 224
Query: 320 GHSCHIKHG--QVFNEISRNFI 339
H + + ++ F+
Sbjct: 225 KHVITVNSAHHALEEDVIA-FM 245
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 60.9 bits (148), Expect = 8e-11
Identities = 47/293 (16%), Positives = 99/293 (33%), Gaps = 45/293 (15%)
Query: 72 FTEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPG 131
T G + +I + +G+G + + +G S++ Q+ A + I +D G
Sbjct: 7 ITVGTENQAPIEIYYEDHGTG-KPVVLIHG-WPLSGRSWEYQVPALVEAGYRVITYDRRG 64
Query: 132 NVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHL 191
+G+S + + D+ +LL+ L + V+L G+ GG
Sbjct: 65 -------------FGKSSQPWEGYEYDTFTS---DLH-QLLEQLELQNVTLVGFSMGGGE 107
Query: 192 SF-VFSMKYPHMVHKLVIWGT--KSFLTIDN-------VRVFEGMRR--LSNWSPMARSE 239
S + K+V G ++ E + +++ E
Sbjct: 108 VARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLD-E 166
Query: 240 VLK---AYDNDVNYITGIFNQYVDMVNL---------IFKSYGRNVYQELLPYVDVPVLV 287
K A + + ++ F Y + ++ + +++ L ++P L+
Sbjct: 167 FTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLI 226
Query: 288 FHSADDVMVSTQQVQSLLNQL-KFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
H D V + L ++ + G H + H + FNE F+
Sbjct: 227 IHGDSDATVPFEYSGKLTHEAIPNSKVALIKGGPHGLNATHAKEFNEALLLFL 279
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 59.7 bits (145), Expect = 2e-10
Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 42/281 (14%)
Query: 79 IKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLL 138
+ ++ + G+G V+F G G R Q+ AF + I +D G
Sbjct: 30 FRVINLAYDDNGTGDPVVFIA-GRGGAGRTWHPHQVPAFLAAGYRCITFDNRG------- 81
Query: 139 GKTCSGYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSM 197
G + +G + + V L++ L + + G G ++ +
Sbjct: 82 ------IGATENAEGFT------TQTMVADTAALIETLDIAPARVVGVSMGAFIAQELMV 129
Query: 198 KYPHMVHKLVIWGTKSFLT--------IDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVN 249
P +V V+ T+ L + G++ + AR+ +L+ +
Sbjct: 130 VAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPP--TYDARARLLENFSRKTL 187
Query: 250 YITGIFNQYVDMVNLI----FKSYGRNV-------YQELLPYVDVPVLVFHSADDVMVST 298
++ M ++ + + PVLV ADDV+
Sbjct: 188 NDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPP 247
Query: 299 QQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + + L +Y Q GH + + N F
Sbjct: 248 YLGREVADALPNGRYLQIPDAGHLGFFERPEAVNTAMLKFF 288
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 58.9 bits (143), Expect = 5e-10
Identities = 40/284 (14%), Positives = 78/284 (27%), Gaps = 40/284 (14%)
Query: 72 FTEGFFSIKGCDIRFIKYGSG-AQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPP 130
+ S + I G A L +G L + + + K + + D
Sbjct: 45 CKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTM-WYPNIADWSSK-YRTYAVDII 102
Query: 131 GNVVLYLLGKTCSGYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGG 189
G +P+ + + ++ LG+ K + G GG
Sbjct: 103 G-------------DKNKSIPEN----VSGTRTDYANWLLDVFDNLGIEKSHMIGLSLGG 145
Query: 190 HLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVF---------EGMRRLSNW----SPMA 236
+ F ++ P V I + + G+ NW +
Sbjct: 146 LHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETFLNWMMNDQNVL 205
Query: 237 RSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMV 296
+K + V + G N N + E L VP+L+ +V+
Sbjct: 206 HPIFVKQFKAGVMWQDGSRN-----PNPNADGFPYVFTDEELRSARVPILLLLGEHEVIY 260
Query: 297 S-TQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + + + + GH ++ NE F
Sbjct: 261 DPHSALHRASSFVPDIEAEVIKNAGHVLSMEQPTYVNERVMRFF 304
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 57.4 bits (139), Expect = 1e-09
Identities = 56/288 (19%), Positives = 98/288 (34%), Gaps = 43/288 (14%)
Query: 76 FFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVL 135
F + G I + +GSG Q + F++G +S++ Q+ + + I D G
Sbjct: 3 FTTRDGTQIYYKDWGSG-QPIVFSHG-WPLNADSWESQMIFLAAQGYRVIAHDRRG---- 56
Query: 136 YLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVF 195
+G+S + S +D+ +L++ L + LFG+ GG +
Sbjct: 57 ---------HGRS-SQPWSGNDMDTYADDLA---QLIEHLDLRDAVLFGFSTGGGEVARY 103
Query: 196 SMKY-PHMVHKLVIWGTKSFLTID--------NVRVFEGMRR--LSNWSPMARSEVLKAY 244
++ V K + L + + VF+G+R+ L++ S + + +
Sbjct: 104 IGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPF 163
Query: 245 DNDVNYITGIFNQYVD-MVNLIFKSYGRNVYQ-----------ELLPYVDVPVLVFHSAD 292
VD + +N Y E L +DVP LV H
Sbjct: 164 FGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDA 223
Query: 293 DVMVSTQQVQSLLNQL-KFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
D +V + L K +S H H N FI
Sbjct: 224 DQVVPIEASGIASAALVKGSTLKIYSGAPHGLTDTHKDQLNADLLAFI 271
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 55.1 bits (133), Expect = 6e-09
Identities = 48/284 (16%), Positives = 92/284 (32%), Gaps = 44/284 (15%)
Query: 81 GCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGK 140
G +I + +G G + + F +G ++++ QL A + I D G
Sbjct: 8 GVEIFYKDWGQG-RPVVFIHG-WPLNGDAWQDQLKAVVDAGYRGIAHDRRG--------- 56
Query: 141 TCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSF-VFSMKY 199
+G S P + + + D+ +LL L + V+L GG
Sbjct: 57 ----HGHSTPVWDGYDFDTFAD---DLN-DLLTDLDLRDVTLVAHSMGGGELARYVGRHG 108
Query: 200 PHMVHKLVIWGT--KSFLTIDN------VRVFEGMRR--LSNWSPMAR--SEVLKAYDND 247
+ V+ + D VF+ ++ L+ S + +E + +
Sbjct: 109 TGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRP 168
Query: 248 VNYITGIFNQYVDMVNL---------IFKSYGRNVYQELLPYVDVPVLVFHSADDVMVST 298
N +T + + ++G + E L D+P LV H DD +V
Sbjct: 169 GNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDDDQVVPI 228
Query: 299 QQVQSLLNQL-KFCQYYQFSSGGHSCHIK--HGQVFNEISRNFI 339
Q+ + + H + + FN F+
Sbjct: 229 DATGRKSAQIIPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFL 272
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 52.8 bits (127), Expect = 5e-08
Identities = 41/288 (14%), Positives = 84/288 (29%), Gaps = 43/288 (14%)
Query: 74 EGFFSIKGCDIRFIKYG-SGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
G+ + ++ G LF +G G ++ L + + F +++D G
Sbjct: 5 IGYVPVGEAELYVEDVGPVEGPALFVLHGGPGGNAYVLREGLQDY-LEGFRVVYFDQRG- 62
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFG--WCDGG 189
G+SL + P + ++ V+ L + LGV + L + G
Sbjct: 63 ------------SGRSLELPQD--PRLFTVDALVEDTLLLAEALGVERFGLLAHGF--GA 106
Query: 190 HLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSN------WSPMARSEVLKA 243
++ ++P +++ +F + + R E
Sbjct: 107 VVALEVLRRFPQAEGAILLAPWVNFPWLAARLAEAAGLAPLPDPEENLKEALKREEPKAL 166
Query: 244 YDNDVN-------------YITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHS 290
+D + GI + + R Y L P+ V
Sbjct: 167 FDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRPLYVLVG 226
Query: 291 ADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNF 338
D S + + ++L+ GH I + F E +
Sbjct: 227 ERD-GTSYPYAEEVASRLR-APIRVLPEAGHYLWIDAPEAFEEAFKEA 272
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 52.9 bits (127), Expect = 5e-08
Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 43/234 (18%)
Query: 144 GYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHM 202
G+ +S P + Q + LL+ LGV + S+ G GG L+ +++ YP
Sbjct: 83 GFCKSSKPAHYQYSFQQLAA---NTH-ALLERLGVARASVIGHSMGGMLATRYALLYPRQ 138
Query: 203 VHKLVI---WGTKSFLTIDN--VRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQ 257
V +LV+ G + + + V + RR S + +A + F++
Sbjct: 139 VERLVLVNPIGLEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPE-FDR 197
Query: 258 YVDMVNLIFKSYGRNVY----------------QELLPYVDVPVLVFHSADDVMVSTQQV 301
+V M +++ GR L + +P L+ D +
Sbjct: 198 WVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMPTLLLIGEKDNTAIGKDA 257
Query: 302 QSLLNQLKFCQYYQ----------------FSSGGHSCHIKHGQVFNEISRNFI 339
+ + Y Q F GH+ I+ + F++ +
Sbjct: 258 APAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQIQAPERFHQALLEGL 311
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 52.6 bits (127), Expect = 6e-08
Identities = 48/317 (15%), Positives = 108/317 (34%), Gaps = 77/317 (24%)
Query: 72 FTEGFFSIKGCDIRFIKYGSGAQ---VLF------FTYGVLGEIRNSFKKQLTAFDPKLF 122
E + + G I + + + ++ ++ + L +
Sbjct: 5 CIENYAKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSH--------DYLLSLRDMTKEGI 56
Query: 123 TSIFWDPPGNVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLK-LLGVCKVS 181
T +F+D G G+S +S Y E+ + L L G KV
Sbjct: 57 TVLFYDQFGC-------------GRSEEPDQSKFTIDYGVEEAE---ALRSKLFGNEKVF 100
Query: 182 LFG--WCDGGHLSFVFSMKYPHMVHKLVIWGT--KSFLTIDNV-RVFEGM---------- 226
L G + GG L+ +++KY + L++ G LT+ + R+ + +
Sbjct: 101 LMGSSY--GGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRDAIKK 158
Query: 227 --RRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQ--------- 275
S +P + V Y ++ + +++ + + RNVY+
Sbjct: 159 YGSSGSYENPEYQEAVNYFYH---QHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFT 215
Query: 276 -----------ELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCH 324
+ + + +P L+ D V+ + + ++ + + F H
Sbjct: 216 ITGTIKDWDITDKISAIKIPTLITVGEYD-EVTPNVARVIHEKIAGSELHVFRDCSHLTM 274
Query: 325 IKHGQVFNEISRNFILE 341
+ + +N++ +FIL+
Sbjct: 275 WEDREGYNKLLSDFILK 291
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 51.9 bits (125), Expect = 7e-08
Identities = 56/289 (19%), Positives = 106/289 (36%), Gaps = 47/289 (16%)
Query: 76 FFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVL 135
F + G I F +GSG + + F++G L + + ++ Q+ + + +I +D G
Sbjct: 3 FVAKDGTQIYFKDWGSG-KPVLFSHGWLLD-ADMWEYQMEYLSSRGYRTIAFDRRG---- 56
Query: 136 YLLGKTCSGYGQSLPKGRSFVPFQYIEEDV---DIAYELLKLLGVCKVSLFGWCDGGHLS 192
+G+S + + Y D DIA +L++ L + +V+L G+ GG
Sbjct: 57 ---------FGRS---DQPWTGNDY---DTFADDIA-QLIEHLDLKEVTLVGFSMGGGDV 100
Query: 193 F-VFSMKYPHMVHKLVIWGTKSFL---TIDN-----VRVFEGMRR--LSNWSPMARSEVL 241
+ V LV+ G + L D + VF + L + +
Sbjct: 101 ARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNA 160
Query: 242 KAY-DNDVNYITGIFNQYVDMVNL---------IFKSYGRNVYQELLPYVDVPVLVFHSA 291
Y N ++ + L ++ ++ + +DVP LV H
Sbjct: 161 PFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGD 220
Query: 292 DDVMVSTQQVQSLLNQL-KFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
D +V + + +L K + + H + H Q NE F+
Sbjct: 221 GDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTHAQQLNEDLLAFL 269
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 51.5 bits (124), Expect = 9e-08
Identities = 44/279 (15%), Positives = 78/279 (27%), Gaps = 50/279 (17%)
Query: 83 DIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTC 142
+I + G G L +G G ++ FT D PG
Sbjct: 3 NIWWQTKGQGNVHLVLLHG-WGLNAEVWRCIDEELSSH-FTLHLVDLPG----------- 49
Query: 143 SGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHM 202
+G+S + + + + K GW GG ++ ++ +P
Sbjct: 50 --FGRSRG-----FGALSLADMAE----AVLQQAPDKAIWLGWSLGGLVASQIALTHPER 98
Query: 203 VHKLVIWGT---------------------KSFLTIDNVRVFEGMRRLSNWSPMARSEVL 241
V LV + + L+ D R E L +
Sbjct: 99 VRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQDA 158
Query: 242 KAYDNDVNYITGIFNQ-YVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQ 300
+A V + + ++ R + L V +P L + D +V +
Sbjct: 159 RALKKTVLALPMPEVDVLNGGLEILKTVDLR----QPLQNVSMPFLRLYGYLDGLVPRKV 214
Query: 301 VQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
V L + Y F+ H+ I H F +
Sbjct: 215 VPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALK 253
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 51.6 bits (124), Expect = 1e-07
Identities = 50/291 (17%), Positives = 85/291 (29%), Gaps = 45/291 (15%)
Query: 70 DVFTEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDP 129
D F I + + GSG ++ F +G + F+ + + FT+I D
Sbjct: 46 DHFISRRVDIGRITLNVREKGSG-PLMLFFHG-ITSNSAVFEPLMIRLSDR-FTTIAVDQ 102
Query: 130 PGNVVLYLLGKTCSGYGQSLPKGRS-FVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDG 188
G +G S K + + Y + DIA L++ L L G G
Sbjct: 103 RG-------------HGLS-DKPETGYEANDYAD---DIA-GLIRTLARGHAILVGHSLG 144
Query: 189 GHLSFVFSMKYPHMVHKLVI--------------------WGTKSFLTIDNVRVFEGMRR 228
S + KYP +V +V G++ F I V + R
Sbjct: 145 ARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIKAVEAYLAGRY 204
Query: 229 LSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVF 288
+ + R Y + + + R+ V PVL+
Sbjct: 205 PNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARG---LRSDLVPAYRDVTKPVLIV 261
Query: 289 HSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+VS + H + ++ + NFI
Sbjct: 262 RGESSKLVSAAALAKTSRLRPDLPVVVVPGADHYVNEVSPEITLKAITNFI 312
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 50.5 bits (120), Expect = 3e-07
Identities = 27/212 (12%), Positives = 60/212 (28%), Gaps = 20/212 (9%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMV 203
G + P + +++ D+ +L+ L + G G ++ +++ +P V
Sbjct: 77 GMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTV 136
Query: 204 HKLVIWGTKSFLTIDNVR---VFEGM----------RRLSNWSPMARSEVLKAYDNDVNY 250
LV+ G+ S SE+++ Y
Sbjct: 137 EGLVLINIDPNAKGWMDWAAHKLTGLTSSIPDMILGHLFSQEELSGNSELIQKY---RGI 193
Query: 251 ITGIFNQ--YVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVS-TQQVQSLLNQ 307
I N N N + + PV++ + S L+
Sbjct: 194 IQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHEDAVVECNSKLDP 253
Query: 308 LKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ + + + G + E + F+
Sbjct: 254 TQ-TSFLKMADSGGQPQLTQPGKLTEAFKYFL 284
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 50.1 bits (120), Expect = 3e-07
Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 30/220 (13%)
Query: 144 GYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYP 200
G+G+S P + F + + L L + +V+L W GG L + P
Sbjct: 83 GFGRSDKPTDDAVYTFGFHRRSLL---AFLDALQLERVTLVCQDW--GGILGLTLPVDRP 137
Query: 201 HMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMAR-------------SEVLKAYD-- 245
+V +L++ T + + + FE R SP + AYD
Sbjct: 138 QLVDRLIVMNTALAVGLSPGKGFESWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAP 197
Query: 246 -NDVNYITGIFNQYVDMVNLIFK----SYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQ 300
+ G+ + +V + GR P + A D ++ +
Sbjct: 198 FPGPEFKAGVRR-FPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDPVLGPEV 256
Query: 301 VQSLLNQLKFC-QYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ L ++ C + +GGH + F
Sbjct: 257 MGMLRQAIRGCPEPMIVEAGGHFVQEHGEPIARAALAAFG 296
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 48.8 bits (117), Expect = 8e-07
Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 29/216 (13%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMV 203
G G + + I + ++ L G+ ++ G G + ++ YP V
Sbjct: 51 GTGNNPDTLAE--DYS-IAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASV 107
Query: 204 HKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDV--NYITGIFNQY--- 258
L+ + R F+ RL S +A+ +
Sbjct: 108 TVLISVNGWLRINAHTRRCFQVRERL------LYSGGAQAWVEAQPLFLYPADWMAARAP 161
Query: 259 ---VDMVNLIFKSYGRNVY------------QELLPYVDVPVLVFHSADDVMVSTQQVQS 303
+ + G+N + PV + ++DD++V T
Sbjct: 162 RLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSE 221
Query: 304 LLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
L L Q GGH+C++ + FN + N +
Sbjct: 222 LHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGL 257
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 48.0 bits (115), Expect = 2e-06
Identities = 49/286 (17%), Positives = 101/286 (35%), Gaps = 42/286 (14%)
Query: 76 FFSIKGCDIRFIKYGS---GAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
+ ++ G ++ + G A + + LG + + Q+ A F + +D G
Sbjct: 6 YAAVNGTELHYRIDGERHGNAPWIVLSNS-LGTDLSMWAPQVAALSKH-FRVLRYDTRG- 62
Query: 133 VVLYLLGKTCSGYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHL 191
+G S PKG P+ IE+ L+ L + + + G GG
Sbjct: 63 ------------HGHSEAPKG----PYT-IEQLTGDVLGLMDTLKIARANFCGLSMGGLT 105
Query: 192 SFVFSMKYPHMVHKLVIWGTKSFLT--------IDNVRVFEGMRRLSNWSPMAR---SEV 240
+ ++ + ++ + T + + R EGM L++ + R ++
Sbjct: 106 GVALAARHADRIERVALCNTAARIGSPEVWVPRAVKART-EGMHALADAV-LPRWFTADY 163
Query: 241 LKAYDNDVNYITGIFNQYVDMVNLI--FKSYGRNVYQELLPYVDVPVLVFHSADDVMVST 298
++ + I +F D ++ + P + VP LV D+ +
Sbjct: 164 MEREPVVLAMIRDVFVH-TDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATP 222
Query: 299 QQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFILEENK 344
Q + L + +Y + H +I+ F + +F L E K
Sbjct: 223 AQGRELAQAIAGARYVEL-DASHISNIERADAFTKTVVDF-LTEQK 266
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 47.5 bits (113), Expect = 2e-06
Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 16/202 (7%)
Query: 143 SGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHM 202
+G+G S K + IE+ I + V + L G GG ++ + + YP +
Sbjct: 84 NGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDL 143
Query: 203 VHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMV 262
+ K+V+ + L D + + + + G +
Sbjct: 144 IKKVVLLAPAATLKGD------ALEGNTQGVTYNPDHIPDRLPFKDLTLGGFY--LRIAQ 195
Query: 263 NLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHS 322
L +Y+ + PV + H DD +VS + + + H
Sbjct: 196 QL-------PIYEVSAQF-TKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADHC 247
Query: 323 CHIKHGQVFNEISRNFILEENK 344
+ + ++ +F+ N
Sbjct: 248 FSDSYQKNAVNLTTDFLQNNNA 269
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 47.0 bits (112), Expect = 3e-06
Identities = 44/309 (14%), Positives = 90/309 (29%), Gaps = 62/309 (20%)
Query: 70 DVFTEGFFSIKGCDIRFIKYGS-GAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWD 128
+ E F G I +GS V+ +G + E ++++ + + + D
Sbjct: 2 NAMEEKFLEFGGNQICLCSWGSPEHPVVLCIHG-ILEQGLAWQEVALPLAAQGYRVVAPD 60
Query: 129 PPGNVVLYLLGKTCSGYGQS--LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFG-- 184
G +G+S L S+ ++ I +++ L + L G
Sbjct: 61 LFG-------------HGRSSHLEMVTSYSSLTFLA---QID-RVIQELPDQPLLLVGHS 103
Query: 185 WCDGGHLSFVFSMKYPHMVHKLVI--------------------WGTKSFLTIDNVRVFE 224
G L+ + P + +L++ + +F
Sbjct: 104 M--GAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLSSTPQHPIFP 161
Query: 225 GM-----RRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVD-------MVNLIFKSYGRN 272
+ R ++ G D ++ L GR+
Sbjct: 162 DVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRS 221
Query: 273 VYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFN 332
Y E+L + VP + + + + +Q + + SGGH+ HI
Sbjct: 222 QYLEMLKSIQVPTTLVYGDSSKLNRPEDLQQQKMTMTQAKRVFL-SGGHNLHIDAAAALA 280
Query: 333 EISRNFILE 341
+ IL
Sbjct: 281 SL----ILT 285
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 46.9 bits (112), Expect = 4e-06
Identities = 50/288 (17%), Positives = 95/288 (32%), Gaps = 56/288 (19%)
Query: 76 FFSIKGCDIRFIKYGSG-AQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVV 134
+ G + + G+ +L + +G + + QL A F + +D G
Sbjct: 9 LATSDGASLAYRLDGAAEKPLLALSNS-IGTTLHMWDAQLPALTRH-FRVLRYDARG--- 63
Query: 135 LYLLGKTCSGYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSF 193
+G S +P G P+ + + ELL L V + G GG +
Sbjct: 64 ----------HGASSVPPG----PYT-LARLGEDVLELLDALEVRRAHFLGLSLGGIVGQ 108
Query: 194 VFSMKYPHMVHKLVIWGTKSFLT--------IDNVRVFEGMRR-----LSNW-SPM---A 236
++ P + +LV+ T ++L I V E M L NW P
Sbjct: 109 WLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLER 168
Query: 237 RSEVLKAY-----DNDVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSA 291
V++ + + + + G F D + L ++ P LV A
Sbjct: 169 AEPVVERFRAMLMATNRHGLAGSFAAVRDTD-----------LRAQLARIERPTLVIAGA 217
Query: 292 DDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
D + + + + + + H +++ Q F +F+
Sbjct: 218 YDTVTAASHGELIAASIAGARLVTL-PAVHLSNVEFPQAFEGAVLSFL 264
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 47.1 bits (112), Expect = 4e-06
Identities = 47/292 (16%), Positives = 90/292 (30%), Gaps = 43/292 (14%)
Query: 72 FTEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPG 131
T G + D+ + +G+G V+ G +S+++Q A + I +D G
Sbjct: 4 ITVGQENSTSIDLYYEDHGTGVPVVLIH-G-FPLSGHSWERQSAALLDAGYRVITYDRRG 61
Query: 132 NVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGG-H 190
+GQS + + D+ +L+ L + L G+ G
Sbjct: 62 -------------FGQSSQPTTGYDYDTFAA---DLN-TVLETLDLQDAVLVGFSMGTGE 104
Query: 191 LSFVFSMKYPHMVHKLVIWGT---KSFLTIDN------VRVFEGMRR--LSNWSPMARSE 239
++ S + + + T DN F+G+ ++
Sbjct: 105 VARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGF 164
Query: 240 VLKAYDNDVNYITGIFNQYVD-MVNLIFKSYGRNVYQ----------ELLPYVDVPVLVF 288
Y+ D N T I + V N +P +DVP L+
Sbjct: 165 FNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALIL 224
Query: 289 HSADDVMVSTQQVQSLLNQL-KFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
H D + + + ++ +Y + H H + N F+
Sbjct: 225 HGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTHAEEVNTALLAFL 276
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 47.0 bits (112), Expect = 4e-06
Identities = 38/261 (14%), Positives = 77/261 (29%), Gaps = 53/261 (20%)
Query: 117 FDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQSLPKGRSFVPFQYIE---EDVDIAYELLK 173
D T I +D G G S + F + ++ +
Sbjct: 78 ADETGRTVIHYDQVG-------------CGNSTHLPDAPADFWTPQLFVDEFH---AVCT 121
Query: 174 LLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGT--KSFLTIDNVRVFEGMRRLSN 231
LG+ + + G GG L +++ P + L I + L +
Sbjct: 122 ALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQLPAET 181
Query: 232 WSPMARSEVLKAYDND--VNYITGIFNQYVDMVNLIFKSYGRNVYQ-------------- 275
+ + R E + + + ++V V + + +V Q
Sbjct: 182 RAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGP 241
Query: 276 ---------------ELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGG 320
+ LP V PVLV D + + Q ++ + + + F
Sbjct: 242 NEFHVVGTLGDWSVIDRLPDVTAPVLVIAGEHD-EATPKTWQPFVDHIPDVRSHVFPGTS 300
Query: 321 HSCHIKHGQVFNEISRNFILE 341
H H++ + F + F+ +
Sbjct: 301 HCTHLEKPEEFRAVVAQFLHQ 321
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 47.1 bits (111), Expect = 5e-06
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 24/187 (12%)
Query: 149 LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVI 208
LPK + +Y EE ++ ++ G V L G GG L + + +VI
Sbjct: 213 LPKTMETLHLEYFEEAMNYLLSHPEVKGP-GVGLLGISKGGELCLSMASFLKGITAAVVI 271
Query: 209 WGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKS 268
G+ + + + + E L + N I + Y D+V+++
Sbjct: 272 NGSVANVG---------------GTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSP 316
Query: 269 YGRNVYQELLP--YVDVPVLVFHSADDVMV-STQQVQSLLNQLKF-----CQYYQFSSGG 320
+ +P + L DD S +L+ Q + G
Sbjct: 317 LEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETG 376
Query: 321 HSCHIKH 327
H +
Sbjct: 377 HYIEPPY 383
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 46.1 bits (110), Expect = 6e-06
Identities = 49/292 (16%), Positives = 90/292 (30%), Gaps = 45/292 (15%)
Query: 73 TEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGN 132
T G + D+ + +G+G Q + +G +S+++Q A + I +D G
Sbjct: 4 TVGQENSTSIDLYYEDHGTG-QPVVLIHG-FPLSGHSWERQSAALLDAGYRVITYDRRG- 60
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFGWCDGGHL 191
+GQS S Y + +L+ L + L G+ G
Sbjct: 61 ------------FGQS-----SQPTTGYDYDTFAADLNTVLETLDLQDAVLVGFSTGTGE 103
Query: 192 SFVFSMKY-PHMVHKLVIWGT---KSFLTIDN------VRVFEGMR--RLSNWSPMARSE 239
+ Y + K+ + T DN F+G+ ++
Sbjct: 104 VARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGF 163
Query: 240 VLKAYDNDVNYITGIFNQYVD-MVNLIFKSYGRNVYQ----------ELLPYVDVPVLVF 288
Y+ D N T I + V N +P +DVP L+
Sbjct: 164 FNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALIL 223
Query: 289 HSADDVMVSTQQVQSLLNQL-KFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
H D + + + ++ +Y + H H + N F+
Sbjct: 224 HGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTHAEEVNTALLAFL 275
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 46.3 bits (110), Expect = 6e-06
Identities = 48/285 (16%), Positives = 84/285 (29%), Gaps = 45/285 (15%)
Query: 81 GCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGK 140
++ + GSG V+ G +S+++Q + + I +D G
Sbjct: 12 PIELYYEDQGSGQPVVLIH-G-YPLDGHSWERQTRELLAQGYRVITYDRRG--------- 60
Query: 141 TCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKY- 199
+G S + + D+ +L+ L + V L G+ G + +Y
Sbjct: 61 ----FGGSSKVNTGYDYDTFAA---DLH-TVLETLDLRDVVLVGFSMGTGELARYVARYG 112
Query: 200 PHMVHKLVIWGTKSFL---TIDN-----VRVFEGMRRL--SNWSPMARSEVLKAYDNDVN 249
V KL + DN VF+G+ + Y+ D N
Sbjct: 113 HERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDEN 172
Query: 250 YITGIFNQYVD-MVNLIFKSYGRNVYQ----------ELLPYVDV---PVLVFHSADDVM 295
+ I Q V N+ S Y + V P L+ H D +
Sbjct: 173 LGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNI 232
Query: 296 VSTQQVQSLLNQL-KFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ +Q Y + H H N + F+
Sbjct: 233 LPIDATARRFHQAVPEADYVEVEGAPHGLLWTHADEVNAALKTFL 277
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 45.7 bits (109), Expect = 9e-06
Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 25/198 (12%)
Query: 166 DIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYP-HMVHKLVIWGT--KSFL-TIDNV- 220
D+A ++ LG+ G GG + ++P V K V+ + T N
Sbjct: 78 DVA-AVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPG 136
Query: 221 ----RVFEGMRR--LSNWSPMAR---SEVLKAYDNDVNYIT-GIFNQYVDMVNL------ 264
VF+G + SN + R + Y+ + GI + +
Sbjct: 137 GLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAH 196
Query: 265 --IFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL-KFCQYYQFSSGGH 321
++ + + E L + PVLV H DD +V + L +L + H
Sbjct: 197 YDGIVAFSQTDFTEDLKGIQQPVLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPH 256
Query: 322 SCHIKHGQVFNEISRNFI 339
H V N FI
Sbjct: 257 GMPTTHADVINADLLAFI 274
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 45.4 bits (108), Expect = 1e-05
Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 31/187 (16%)
Query: 144 GYGQSLPKGRSFVP-FQYIEEDVDIAYELLK-LLGVCKVSLFG--WCDGGHLSFVFSMKY 199
G+GQS R V F DV + ++ V L G GG ++ + + +
Sbjct: 97 GHGQS-EGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSM--GGAIAILTAAER 153
Query: 200 PHMVHKLVIWGT---KSFLTIDNVRVFEGMRRLSNWSPMAR------------SEVLKAY 244
P +V+ + + +V + L+ P + Y
Sbjct: 154 PGHFAGMVLISPLVLANPESATTFKVL-AAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIY 212
Query: 245 DNDVNYITGIF--NQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQ 302
++D + ++N + + + LP + VP L+ + D + ++
Sbjct: 213 NSDPLICRAGLKVCFGIQLLNAVSRV------ERALPKLTVPFLLLQGSADRLCDSKGAY 266
Query: 303 SLLNQLK 309
L+ K
Sbjct: 267 LLMELAK 273
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 45.4 bits (108), Expect = 1e-05
Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 31/187 (16%)
Query: 144 GYGQSLPKGRSFVP-FQYIEEDVDIAYELLK-LLGVCKVSLFG--WCDGGHLSFVFSMKY 199
G+GQS R V F DV + ++ V L G GG ++ + + +
Sbjct: 79 GHGQS-EGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSM--GGAIAILTAAER 135
Query: 200 PHMVHKLVIWGT---KSFLTIDNVRVFEGMRRLSNWSPMARS------------EVLKAY 244
P +V+ + + +V + L++ P S + Y
Sbjct: 136 PGHFAGMVLISPLVLANPESATTFKVL-AAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIY 194
Query: 245 DNDVNYITGIF--NQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQ 302
++D + ++N + + + LP + VP L+ + D + ++
Sbjct: 195 NSDPLICRAGLKVCFGIQLLNAVSRV------ERALPKLTVPFLLLQGSADRLCDSKGAY 248
Query: 303 SLLNQLK 309
L+ K
Sbjct: 249 LLMELAK 255
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 43.7 bits (103), Expect = 3e-05
Identities = 15/89 (16%), Positives = 36/89 (40%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMV 203
G+G+S + + ++ + + LK GV + + G GG + + +++YP +V
Sbjct: 66 GFGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVARSVIMGASMGGGMVIMTTLQYPDIV 125
Query: 204 HKLVIWGTKSFLTIDNVRVFEGMRRLSNW 232
++ ++ + L W
Sbjct: 126 DGIIAVAPAWVESLKGDMKKIRQKTLLVW 154
Score = 29.8 bits (67), Expect = 0.84
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 257 QYVDMVNLIFK--SYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYY 314
QY D+V+ I + + + L+ + D +V + + + +
Sbjct: 120 QYPDIVDGIIAVAPAWVESLKGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLE 179
Query: 315 QFSSGGHSCHIKHGQVFNEISRNFI 339
GH +I+ + F I+ +F+
Sbjct: 180 IVEGSGHPVYIEKPEEFVRITVDFL 204
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain,
catalytic triad (A His272, Glu130), mutant, I135F,
haloalkanes; 0.95A {Rhodococcus SP} PDB: 3fwh_A 3fbw_A
3rlt_A 3rk4_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A
Length = 299
Score = 43.8 bits (104), Expect = 4e-05
Identities = 37/232 (15%), Positives = 62/232 (26%), Gaps = 45/232 (19%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYPH 201
G G+S K F +D ++ LG+ +V L W G L F ++ + P
Sbjct: 68 GMGKS-DKPDLDYFFDDHVRYLD---AFIEALGLEEVVLVIHDW--GSALGFHWAKRNPE 121
Query: 202 MVHKLVI--------------------------WGTKSFLTIDNVRVFEGMRRLSNWSPM 235
V + L ID EG P+
Sbjct: 122 RVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPL 181
Query: 236 ARSEVLKAYD---NDVNYITGIFNQYVDMVNLIFKSYGRNV-----YQELLPYVDVPVLV 287
+ Y ++ ++ I V Y L VP L+
Sbjct: 182 TE-VEMDHYREPFLKPVDREPLWRFPNEL--PIAGEPANIVALVEAYMNWLHQSPVPKLL 238
Query: 288 FHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
F V++ + L L C+ G H + + ++
Sbjct: 239 FWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYLQEDNPDLIGSEIARWL 290
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 43.1 bits (102), Expect = 6e-05
Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 21/183 (11%)
Query: 143 SGYGQSLPKGRSFV---PFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKY 199
G+G+S F F+++ + + KL V + + G GG + +
Sbjct: 65 YGHGKS---DGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAME 121
Query: 200 PHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYV 259
++ L+ + + + R E + + P + L A+D + G + +
Sbjct: 122 RDIIKALIPLSPAAMIP-EIARTGELLGL--KFDPENIPDELDAWDGRK--LKGNYVR-- 174
Query: 260 DMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSG 319
+ V + Y PVL+ H D V + + Q K C+
Sbjct: 175 VAQTI-------RVEDFVDKY-TKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGD 226
Query: 320 GHS 322
H
Sbjct: 227 THC 229
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 42.9 bits (101), Expect = 8e-05
Identities = 30/242 (12%), Positives = 59/242 (24%), Gaps = 54/242 (22%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMV 203
G+S + + P+ E A +L GV + + G G ++ V ++ + +
Sbjct: 61 DTGRSTTRDFAAHPYG-FGELAADAVAVLDGWGVDRAHVVGLSMGATITQVIALDHHDRL 119
Query: 204 HKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPM---------------------------- 235
L + + + MR +
Sbjct: 120 SSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKR 179
Query: 236 ------------------ARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQEL 277
+A D+ + + Y L R
Sbjct: 180 VSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYS----LTLPPPSR---AAE 232
Query: 278 LPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRN 337
L V VP LV + D + + L + + + GH+ E+
Sbjct: 233 LREVTVPTLVIQAEHDPIAPAPHGKHLAGLIPTARLAEIPGMGHALPSSVHGPLAEVILA 292
Query: 338 FI 339
Sbjct: 293 HT 294
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 42.7 bits (101), Expect = 8e-05
Identities = 43/292 (14%), Positives = 66/292 (22%), Gaps = 78/292 (26%)
Query: 81 GCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGK 140
G I F + GSG + G L R P FT I +D G
Sbjct: 12 GTPIAFERSGSG-PPVVLVGGALST-RAGGAPLAERLAPH-FTVICYDRRG--------- 59
Query: 141 TCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYP 200
G S + + IE D+A ++ G +FG G LS + +
Sbjct: 60 ----RGDS-GDTPPYAVEREIE---DLA-AIIDAAGG-AAFVFGMSSGAGLSLLAAASGL 109
Query: 201 HMVHKLVIWGTKSFLTIDN----------------------VRVF------------EGM 226
+ V + V F M
Sbjct: 110 PITRLAVFEPPYAVDDSRPPVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQM 169
Query: 227 RRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVL 286
++ W M YD + + +P L
Sbjct: 170 QQAPMWPGMEAVAHTLPYD-------------------HAVMGDNTIPTARFASISIPTL 210
Query: 287 VFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNF 338
V Q L + + +Y + H + F
Sbjct: 211 VMDGGASPAWIRHTAQELADTIPNARYVTLENQT---HTVAPDAIAPVLVEF 259
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 42.6 bits (101), Expect = 9e-05
Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 25/198 (12%)
Query: 166 DIAYELLKLLGVCKVSLFGW-CDGGHLSFVFSMKYPHMVHKLVIWGT--KSFL-TIDN-- 219
D+A L + L + G GG ++ + P V K V+ + + N
Sbjct: 77 DVA-ALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPD 135
Query: 220 ---VRVFEGMRR--LSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLI--------- 265
+ VF+ R +N + + + +D L
Sbjct: 136 GLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAH 195
Query: 266 ---FKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL-KFCQYYQFSSGGH 321
++ + + L +DVPVLV H DD +V +L + H
Sbjct: 196 YECIAAFSETDFTDDLKRIDVPVLVAHGTDDQVVPYADAAPKSAELLANATLKSYEGLPH 255
Query: 322 SCHIKHGQVFNEISRNFI 339
H +V N F+
Sbjct: 256 GMLSTHPEVLNPDLLAFV 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 47/347 (13%), Positives = 105/347 (30%), Gaps = 89/347 (25%)
Query: 40 LENQGSQKTYGLQETLLDTQLPSRTDFIHQDV--FTEGFFSIKGCDIRFIKYGSGAQVLF 97
++ + + Y ++ L + +F +DV + S + D I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTL 65
Query: 98 FTYGVL----GEIRNSFKKQLTAFD-PKLFTSI---FWDPPGNVVLYL--LGKTCSGYGQ 147
+ L E+ F +++ + L + I P +Y+ + + Q
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQ 124
Query: 148 SLPKGRSFVPFQYIEEDVD-IAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKL 206
K V + + LL+L V + G +
Sbjct: 125 VFAKY--NVS---RLQPYLKLRQALLELRPAKNVLIDG------------VL-------- 159
Query: 207 VIWGT-KSFLTIDNVRVFEGMRRLSN---W-------SPMARSEVLKA--YDNDVNYITG 253
G+ K+++ +D ++ ++ W SP E+L+ Y D N+ +
Sbjct: 160 ---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 254 IFNQYVDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDV---------------MVST 298
+ + + + PY + +LV +V +++T
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVL---LNVQNAKAWNAFNLSCKILLTT 272
Query: 299 QQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFILEENKT 345
+ + + + L S + HI + S +E K+
Sbjct: 273 RF-KQVTDFL---------SAATTTHI----SLDHHSMTLTPDEVKS 305
Score = 42.9 bits (100), Expect = 1e-04
Identities = 70/443 (15%), Positives = 123/443 (27%), Gaps = 139/443 (31%)
Query: 15 FLCSFDF--IPRTMSGKVKRKDLVKKIL-ENQGSQKTYGLQETLLDTQ------------ 59
F+ +FD + + +++ + I+ T L TLL Q
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 60 ----------------LPS--RTDFIHQ--------DVFT-------EGFFSIKGC--DI 84
PS +I Q VF + + ++ ++
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 85 RFIKY-------GSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNV---- 133
R K GSG + L + K D K IFW N
Sbjct: 148 RPAKNVLIDGVLGSGKTWV-----ALDVCLS--YKVQCKMDFK----IFWLNLKNCNSPE 196
Query: 134 -VLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLL-------------GVCK 179
VL +L K + RS I EL +LL V
Sbjct: 197 TVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 180 VSL---FGW-C-------DGGHLSFVFSMKYPHMVHKLVIWG-TKS-----FLTIDNVRV 222
F C F+ + H+ T L + R
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 223 FEGMRRLSNWSPMARS---EVLKAYDNDVNYITGIFNQY-VDMVNLIFKS--------YG 270
+ R + +P S E ++ + + D + I +S
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 271 RNVYQEL--LPY-VDVPVLVF------HSADDVMVSTQQVQ--SLLNQLKFCQYYQFSSG 319
R ++ L P +P ++ DVMV ++ SL+ + Q + +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTIS 427
Query: 320 GHSCHIK-HGQVFNEIS--RNFI 339
S +++ ++ NE + R+ +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIV 450
Score = 39.1 bits (90), Expect = 0.002
Identities = 56/371 (15%), Positives = 99/371 (26%), Gaps = 102/371 (27%)
Query: 20 DFIPRTMSGKVKRKDLVKKILEN-QGSQ--KTYGLQ-ETLLDTQLPSRTDFIHQDVFTEG 75
+ R + K L+ +L N Q ++ + L + LL T+ TDF+ T
Sbjct: 232 AELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH- 288
Query: 76 FFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIF--------- 126
S+ + + L Y L +++ +P SI
Sbjct: 289 -ISLDHHSMTLTP--DEVKSLLLKY--LDCRPQDLPREVLTTNP-RRLSIIAESIRDGLA 342
Query: 127 -WDPPGNVVLYLLGKTCSGYGQSLPKG---RSFVPFQYIEEDVDIAYELLKLL------- 175
WD +V L L + F I LL L+
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 176 -------GVCKVSL-FGWCDGG-----HLSFVFSMKYPHM--VHKLVI----------WG 210
+ K SL + +K + +H+ ++
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 211 TKSFLTIDN---------------VRVFEGMRRL---------------SNWSPMARS-- 238
+D R + + W+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 239 --EVLKAYDNDVNYITGIFNQYVDMVNLI--F-KSYGRNVYQELLPYVDVPVLVFHSADD 293
+ LK Y YI +Y +VN I F N+ Y D+ + + D+
Sbjct: 523 TLQQLKFYK---PYICDNDPKYERLVNAILDFLPKIEENLICS--KYTDLLRIALMAEDE 577
Query: 294 VMV--STQQVQ 302
+ + +QVQ
Sbjct: 578 AIFEEAHKQVQ 588
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 42.1 bits (99), Expect = 1e-04
Identities = 25/207 (12%), Positives = 57/207 (27%), Gaps = 41/207 (19%)
Query: 144 GYGQSLPKGRSFVPFQYIEE--DVDIAYELLKLLGVC---KVSLFGWCDGGHLSFVFSMK 198
G+ + D+ AY+ L L +++ G GG+LS + + +
Sbjct: 65 GHEGY---ASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRE 121
Query: 199 YPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQY 258
P V L + + + + + R + + +
Sbjct: 122 RP--VEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQY---- 175
Query: 259 VDMVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMV---STQQVQSLLNQLKFCQYYQ 315
VL+ + +DV+V + +
Sbjct: 176 -----------------------KGDVLLVEAENDVIVPHPVMRNYADAFTNARSLTSRV 212
Query: 316 FSSGGHSCHIK-HGQVFNEISRNFILE 341
+ H+ +K H Q + +++ E
Sbjct: 213 IAGADHALSVKEHQQEYTRALIDWLTE 239
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 42.2 bits (100), Expect = 2e-04
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 2 DQVNPSKRLSGGV-FLCSFDFIPRTMSGKVKRKDLVKKILENQGSQK 47
QV +K+L GGV F+ D +P+ ++GK+ + + + +++ + K
Sbjct: 504 SQVTTAKKLRGGVVFV---DEVPKGLTGKLDARKIREILIKAKKGGK 547
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 41.3 bits (96), Expect = 3e-04
Identities = 32/252 (12%), Positives = 71/252 (28%), Gaps = 50/252 (19%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDV--DIAYELLKLLGVC-----KVSLFGWCDGGHLSFVFS 196
+G S + R + + D D+ LG + G GG +
Sbjct: 96 NHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACD 155
Query: 197 MKYPHMVHKLVI-----------WGTKSFLTIDNVRVFEGM------RRLSNWSPMA--- 236
+ P++ H L++ + L D+ ++ E + + +++ +
Sbjct: 156 VLQPNLFHLLILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYV 215
Query: 237 ------------RSEVLKAY-----------DNDVNYITGIFNQYVDMVNLIFKSYGRNV 273
S++L+ D D + Q +++ +
Sbjct: 216 KYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKMEQAQNLLCYMNMQTFAPF 275
Query: 274 YQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNE 333
+ +V + A Q L L+ G H +++ + E
Sbjct: 276 LISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQNYHLDVIPGGSHLVNVEAPDLVIE 335
Query: 334 ISRNFILEENKT 345
+ I E T
Sbjct: 336 RINHHIHEFVLT 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 59/323 (18%), Positives = 96/323 (29%), Gaps = 111/323 (34%)
Query: 43 QGSQ---------KTYGLQETLL---DTQLPSRTDFIHQDVFTEG-------FFSIKGCD 83
QGSQ KT + + D F D+ F KG
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 84 IRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVVLYLLGKTCS 143
IR Y + + + + + +K + + F G LL T
Sbjct: 1684 IR-ENYSA------MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-----LLSAT-- 1729
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIA-YELLKLLGVCKV-------SLFG-----WCDGGH 190
+ Q P + ++ A +E LK G+ SL G
Sbjct: 1730 QFTQ--P--ALTL--------MEKAAFEDLKSKGLIPADATFAGHSL-GEYAALASLADV 1776
Query: 191 LSF---VFSMKYPHMVH---KLVIWGTKSFLTIDNV-RVFEGMRRLSNWSPMARS---EV 240
+S V +V + + + D + R GM + N +A S E
Sbjct: 1777 MSIESLV------EVVFYRGMTM----QVAVPRDELGRSNYGMIAI-NPGRVAASFSQEA 1825
Query: 241 LKAYDNDVNYITG----I--FN----QYV---DMVNLIFKSYGRNVYQELLPY-----VD 282
L+ V TG I +N QYV D+ L + +L + +D
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-------DTVTNVLNFIKLQKID 1878
Query: 283 VPVLVFHSADDVMVSTQQVQSLL 305
+ L +S ++V+ L
Sbjct: 1879 IIEL------QKSLSLEEVEGHL 1895
Score = 32.3 bits (73), Expect = 0.32
Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 54/195 (27%)
Query: 28 GKVKRKDLVKKILENQGSQKTYGLQETLLD----TQLP-----SRTDFIHQDVFTEGFF- 77
GK+K + + K+I E+ + T+ ++ LL TQ P + +D+ ++G
Sbjct: 1699 GKLKTEKIFKEINEHS-TSYTFRSEKGLLSATQFTQ-PALTLMEKA--AFEDLKSKGLIP 1754
Query: 78 --------SIKGCDIRFIKYG---SGAQVLFFTYGV-LGEIRNSFKKQLTAFDPKLFT-- 123
S+ G +Y S A V+ V + R + D +
Sbjct: 1755 ADATFAGHSL-G------EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 124 SIFWDPPGNVVLYL----LGKTCSGYGQSLPKGRSFV--------PFQYI----EEDVDI 167
+ PG V L G+ + V QY+ +D
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGK---RTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 168 AYELLKLLGVCKVSL 182
+L + + K+ +
Sbjct: 1865 VTNVLNFIKLQKIDI 1879
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A
{Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Length = 316
Score = 40.4 bits (95), Expect = 5e-04
Identities = 35/243 (14%), Positives = 55/243 (22%), Gaps = 56/243 (23%)
Query: 144 GYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYP 200
G+GQS Y + V ++ GV L W G L+F + + P
Sbjct: 65 GFGQS-----GKPDIAYRFFDHVRYLDAFIEQRGVTSAYLVAQDW--GTALAFHLAARRP 117
Query: 201 HMVHKLVI--------------------WGTKSFLTIDNVRVF-----------EGMRRL 229
V L + R F E +
Sbjct: 118 DFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARAVFRKFRTPGEGEAMILEANAFV 177
Query: 230 SNWSPMARS-----EVLKAYD---NDVNYITGIFNQYVDMVNLIFKSYGRNV-----YQE 276
P E + Y + ++ I
Sbjct: 178 ERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPREL--PIAGEPADVYEALQSAHA 235
Query: 277 LLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISR 336
L P L+F +VS + + L C + +G H H
Sbjct: 236 ALAASSYPKLLFTGEPGALVSPEFAERFAASLTRCALIRLGAGLHYLQEDHADAIGRSVA 295
Query: 337 NFI 339
+I
Sbjct: 296 GWI 298
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 40.4 bits (94), Expect = 5e-04
Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 14/162 (8%)
Query: 163 EDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRV 222
+ Y L+ G + L +++ + L+ L +
Sbjct: 91 NSLCTVYHWLQTKGTQNIGLIAASLSARVAYEVISDLE--LSFLITAVGVVNLRDTLEKA 148
Query: 223 FEGMRRLSNWSPMARSEVLKAYDNDV-NYITGIFNQYVDMVNLIFKSYGRNVYQELLPYV 281
+ + + ++ F + D ++
Sbjct: 149 LGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVAN---------T 199
Query: 282 DVPVLVFHSADDVMVSTQQVQSLLNQLKF--CQYYQFSSGGH 321
VP++ F + +D V ++V +L ++ C+ Y H
Sbjct: 200 SVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKLYSLLGSSH 241
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 40.6 bits (94), Expect = 6e-04
Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%)
Query: 131 GNVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVC--KVSLFGWCDG 188
G L L ++ + +Y EE V +L+ V + L G G
Sbjct: 183 GFATLALAYYNFEDLPNNMDN----ISLEYFEEAVCY---MLQHPQVKGPGIGLLGISLG 235
Query: 189 GHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDV 248
+ + ++ + I G+ G+ + + + D+
Sbjct: 236 ADICLSMASFLKNVSATVSINGS-------------GISGNTAI--NYKHSSIPPLGYDL 280
Query: 249 NYITGIFNQYVDMVNLIFKSYGRNVYQELLPY--VDVPVLVFHSADDVMV-STQQVQSLL 305
I F+ VD+V++ G ++P P+L+ DD S Q++
Sbjct: 281 RRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVS 340
Query: 306 NQLK-----FCQYYQFSSGGHSCHIKH 327
+L+ Q + GH +
Sbjct: 341 ERLQAHGKEKPQIICYPGTGHYIEPPY 367
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 40.0 bits (93), Expect = 7e-04
Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 23/193 (11%)
Query: 156 VPFQYIEEDVDIAYE-LLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLV---IWGT 211
+ D L+K G+ +++ G G + K+ +
Sbjct: 91 ITNPRNLYDAVSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQML 150
Query: 212 KSFLTIDNVRVFEG---MRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKS 268
+ V + +G ++ L P A+ + + Q +
Sbjct: 151 GLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGI--------QMYEEEPSRVMP 202
Query: 269 YGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLK----FCQYYQFSSGGHSCH 324
Y + + + HS D +++ +Q L++ L+ + Y G H+
Sbjct: 203 YVKKALSRFSI----DMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 258
Query: 325 IKHGQVFNEISRN 337
K+G+V I N
Sbjct: 259 YKNGKVAKYIFDN 271
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 39.4 bits (91), Expect = 0.001
Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 15/155 (9%)
Query: 117 FDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLG 176
DP + + +D G G+S P V + DI L LG
Sbjct: 56 HDPAKYRIVLFDQ-------------RGSGRSTPHA-DLVDNTTWDLVADIE-RLRTHLG 100
Query: 177 VCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMA 236
V + +FG G L+ ++ +P V +LV+ G + ++
Sbjct: 101 VDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLLRRFELEWFYQEGASRLFPDAWE 160
Query: 237 RSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGR 271
+ ++ + + +
Sbjct: 161 HYLNAIPPVERADLMSAFHRRLTSDDEATRLAAAK 195
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 39.9 bits (94), Expect = 0.001
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 2 DQVNPSKRLSGGV-FLCSFDFIPRTMSGKVKRKDLVKKILE 41
QV+ +KRL GGV F+ D +P+ ++GK+ + + + + +
Sbjct: 506 SQVSNAKRLRGGVRFV---DEVPKGLTGKIDGRAIREILKK 543
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 38.2 bits (89), Expect = 0.002
Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 39/183 (21%)
Query: 144 GYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYP 200
G+G+S P F++ + L++ L + ++L W GG L M P
Sbjct: 84 GFGKSDKPVDEEDYTFEFHRNFLL---ALIERLDLRNITLVVQDW--GGFLGLTLPMADP 138
Query: 201 HMVHKLVI-----------WGTKSFLTIDNVRVFEGMRR-------------LSNWSPMA 236
+L+I S F + + W+P
Sbjct: 139 SRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTL 198
Query: 237 RSEVLKAYD---NDVNYITGIFNQYVDMVNLI---FKSYGRNVYQELLPYVDVPVLVFHS 290
AY D +Y G+ ++ MV + +
Sbjct: 199 TEAEASAYAAPFPDTSYQAGV-RKFPKMVAQRDQAXIDISTEAISFWQNDWNGQTFMAIG 257
Query: 291 ADD 293
D
Sbjct: 258 MKD 260
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 38.4 bits (88), Expect = 0.002
Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 2/112 (1%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLK-LLGVCKVSLFGWCDGGHLSFVFSMKY-PH 201
+ + D+ +K G ++ L G GG + +S Y +
Sbjct: 109 FLKDRQLSFTANWGWSTWISDIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKN 168
Query: 202 MVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITG 253
+ L++ + + V+ + N I
Sbjct: 169 DIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWS 220
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 38.1 bits (89), Expect = 0.003
Identities = 34/236 (14%), Positives = 63/236 (26%), Gaps = 48/236 (20%)
Query: 144 GYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYP 200
G G S + +Y +++ V + LG+ + L W G + + P
Sbjct: 66 GMGDS-----AKPDIEYRLQDHVAYMDGFIDALGLDDMVLVIHDW--GSVIGMRHARLNP 118
Query: 201 HMVHKLVI-------------------WGTKSFLTIDNVRVFEGMRRLSNW--------S 233
V + F + V E M N+
Sbjct: 119 DRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRTADVGEKMVLDGNFFVETILPEM 178
Query: 234 PMARS---EVLKAYD---NDVNYITGIFNQYVDMVNL----IFKSYGRNVYQELLPYVDV 283
+ RS + AY + V + F E L +
Sbjct: 179 GVVRSLSEAEMAAYRAPFPTRQSRLPTLQ-WPREVPIGGEPAFAEAEVLKNGEWLMASPI 237
Query: 284 PVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
P L+FH+ + V L + + +G H H + + +++
Sbjct: 238 PKLLFHAEPGALAPKPVVDYLSENVPNLEVRFVGAGTHFLQEDHPHLIGQGIADWL 293
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 38.5 bits (89), Expect = 0.003
Identities = 26/205 (12%), Positives = 61/205 (29%), Gaps = 13/205 (6%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMV 203
G G++ +G F + + + K+++ G+ GG+ + K +
Sbjct: 197 GQGKNPNQGLHFEV--DARAAISAILDWYQA-PTEKIAIAGFSGGGYFTAQAVEKDKR-I 252
Query: 204 HKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDN--DVNYITGIFNQYVDM 261
+ + F + S+++ + + +VN +
Sbjct: 253 KAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVD 312
Query: 262 VNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKF----CQYYQFS 317
+DVP L A + +Q Q L + K +FS
Sbjct: 313 FITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFS 372
Query: 318 S---GGHSCHIKHGQVFNEISRNFI 339
S C + + ++ + ++
Sbjct: 373 SESGADAHCQVNNFRLMHYQVFEWL 397
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 37.2 bits (86), Expect = 0.003
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 4/66 (6%)
Query: 144 GYGQSLPKGRSFVPFQYIEED-VDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHM 202
G G S + P E ++ L + + G S F
Sbjct: 71 GLGHS---KEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGSQ 127
Query: 203 VHKLVI 208
+ V
Sbjct: 128 LPGFVP 133
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 37.2 bits (86), Expect = 0.008
Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 32/157 (20%)
Query: 57 DTQLPSRTDFIHQDVFTEGFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTA 116
+ +D H V + +R G+ E S++ Q+ A
Sbjct: 228 LPTSCNPSDMSHGYVTVKP-------RVRLHFVELGSGPAVCLCHGFPESWYSWRYQIPA 280
Query: 117 FDPKLFTSIFWDPPGNVVLYLLGKTCSGYGQS-LPKGRSFVPFQYIEEDV--DIAYELLK 173
+ + D GYG+S P +Y E + ++ L
Sbjct: 281 LAQAGYRVLAMD-------------MKGYGESSAPPEIE----EYCMEVLCKEMV-TFLD 322
Query: 174 LLGVCKVSLFG--WCDGGHLSFVFSMKYPHMVHKLVI 208
LG+ + G W GG L + ++ YP V +
Sbjct: 323 KLGLSQAVFIGHDW--GGMLVWYMALFYPERVRAVAS 357
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 36.9 bits (86), Expect = 0.009
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 2 DQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLVKKILENQGSQK 47
QV KR++ F + IP+ SGK+ RKDL K+ GS
Sbjct: 546 KQVVFYKRINKVFFT---ESIPKAPSGKILRKDLRAKLANGLGSGM 588
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 36.3 bits (83), Expect = 0.011
Identities = 13/97 (13%), Positives = 31/97 (31%)
Query: 175 LGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSP 234
GV + +FG G L+ ++ +P V ++V+ G + ++
Sbjct: 102 AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEK 161
Query: 235 MARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGR 271
R + + D + I + + +
Sbjct: 162 WERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAK 198
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 36.4 bits (85), Expect = 0.013
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 2 DQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLVKK 38
QV KR+ F+ + IP+ SGK+ RK+L +K
Sbjct: 499 KQVIFYKRIKRVFFI---EAIPKAPSGKILRKNLKEK 532
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A
{Amycolatopsis mediterranei} PDB: 3flb_A*
Length = 267
Score = 35.3 bits (81), Expect = 0.019
Identities = 35/212 (16%), Positives = 59/212 (27%), Gaps = 57/212 (26%)
Query: 129 PPGNVVLYLL---GKTCSGY---GQSLPKGRSFVPFQY--------------IEEDVDIA 168
P L L G + S + ++L + QY I +
Sbjct: 17 PDARARLVCLPHAGGSASFFFPLAKALAPAVEVLAVQYPGRQDRRHEPPVDSIGGLTNRL 76
Query: 169 YELLKLLGVCKVSLFGWCDGGHLSF------------------VFSMKYPHMVHKLVIWG 210
E+L+ G ++LFG G + + + P + G
Sbjct: 77 LEVLRPFGDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRG 136
Query: 211 TKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYG 270
+ +R G P + VL A +D ++Y
Sbjct: 137 ASDERLVAELRKLGGSDAAMLADPELLAMVLPAIRSDYR---------------AVETY- 180
Query: 271 RNVYQELLPYVDVPVLVFHSADDVMVSTQQVQ 302
++ VD PV VF D VS + +
Sbjct: 181 --RHEPGRR-VDCPVTVFTGDHDPRVSVGEAR 209
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 34.7 bits (80), Expect = 0.029
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 144 GYGQS--LPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPH 201
G G S ++ P QY++ D+ LL G+ + G GG L+ + + P
Sbjct: 65 GRGDSDYAKDPMTYQPMQYLQ---DLE-ALLAQEGIERFVAIGTSLGGLLTMLLAAANPA 120
Query: 202 MVHKLVI 208
+ V+
Sbjct: 121 RIAAAVL 127
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 34.8 bits (80), Expect = 0.030
Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 56/206 (27%)
Query: 128 DPPGNVVLYLL---GKTCSGY---GQSLPKGRSFVPFQY-------------IEEDVDIA 168
D L G + + L + + +EE D+
Sbjct: 9 DASEKTQLICFPFAGGYSASFRPLHAFLQGECEMLAAEPPGHGTNQTSAIEDLEELTDLY 68
Query: 169 YELLKLLGVCKVSLFGWCDGGHLSF-----------------VFSMKYPHMVHKLVIWGT 211
+ L L LFG GG ++F + +++ PH+ K V
Sbjct: 69 KQELNLRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLP 128
Query: 212 KSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGR 271
+D++ GM + S L ++ +D + +
Sbjct: 129 DDQF-LDHIIQLGGMPAELVENKEVMSFFLPSFRSDY---------------RALEQF-- 170
Query: 272 NVYQELLPYVDVPVLVFHSADDVMVS 297
+L + PV VF+ DD
Sbjct: 171 -ELYDLAQ-IQSPVHVFNGLDDKKCI 194
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 35.0 bits (80), Expect = 0.034
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 17/157 (10%)
Query: 179 KVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARS 238
+V L G+ GG+ S + VI G I ++ F ++L M
Sbjct: 265 RVGLIGFRFGGNAMVRLSFLEQEKIKACVILGA----PIHDI--FASPQKLQQMPKMYLD 318
Query: 239 EVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQEL-LPYVDVPVLVFHSADDVMVS 297
+ V I + Q ++ V L VP+L D +
Sbjct: 319 VLASRLGKSVVDIYSLSGQ--------MAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSP 370
Query: 298 TQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQVFNEI 334
Q + + + + S + + Q +
Sbjct: 371 YSDNQMVAFFSTYGKAKKIS--SKTITQGYEQSLDLA 405
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 34.2 bits (78), Expect = 0.051
Identities = 26/203 (12%), Positives = 52/203 (25%), Gaps = 34/203 (16%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVC---KVSLFGWCDGGHLSFVFSMKYP 200
G G+ E+ +LL L + + G GG+ + + P
Sbjct: 189 GQGEM---FEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP 245
Query: 201 HMVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVD 260
+ + WG Y++ +
Sbjct: 246 R-LAACISWG-------------------GFSDLDYWDLETPLTKESWKYVSKVDTLEEA 285
Query: 261 MVNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKF--CQYYQFSS 318
+++ R+V L + P + H D V V ++L +
Sbjct: 286 RLHVHAALETRDV----LSQIACPTYILHGVHD-EVPLSFVDTVLELVPAEHLNLVVEKD 340
Query: 319 GGHSCHIKHGQVFNEISRNFILE 341
G H C G +++ +
Sbjct: 341 GDH-CCHNLGIRPRLEMADWLYD 362
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 33.9 bits (78), Expect = 0.060
Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 144 GYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVC-KVSLFG--WCDGGHLSFVFSMKY 199
G G S K P +Y E D + L L + V L W G L F ++ ++
Sbjct: 64 GMGAS-DKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDW--GSALGFDWANQH 120
Query: 200 PHMVHKLVIWGT------KSFLTIDNVRVFEGMRRLSNWSPMAR---------------- 237
V + + VF+G R
Sbjct: 121 RDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQ 180
Query: 238 --SEVLKAYD----NDVNYITGIFNQYVDMVNLIFKSYGRNV-----YQELLPYVDVPVL 286
E + Y N + ++ I V Y+ L D+P L
Sbjct: 181 LSDEEMNHYRRPFVNGGEDRRPTLSWPRNL--PIDGEPAEVVALVNEYRSWLEETDMPKL 238
Query: 287 VFHSADDVM 295
++ +
Sbjct: 239 FINAEPGAI 247
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 33.7 bits (77), Expect = 0.061
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 284 PVLVFHSADDVMVSTQQVQSLLNQLK----FCQYYQFSSGGH 321
P ++ +ADD +V + L + + F G H
Sbjct: 207 PTFIWTTADDPIVPATNTLAYATALATAKIPYELHVFKHGPH 248
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 33.4 bits (77), Expect = 0.094
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 144 GYGQSLPKGRSFVPFQY-IEEDVDIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYP 200
GYG S Y E ++ LG +L G G +S+ ++ P
Sbjct: 69 GYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNR--GARVSYRLALDSP 126
Query: 201 HMVHKLVI 208
+ KL +
Sbjct: 127 GRLSKLAV 134
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 33.3 bits (75), Expect = 0.10
Identities = 8/57 (14%), Positives = 13/57 (22%), Gaps = 13/57 (22%)
Query: 282 DVPVLVFHSADDVMVSTQQVQSLLNQLKFC------QYYQFSSGGHSCHIKHGQVFN 332
P+L+ + D V + + F S H Q
Sbjct: 307 TAPLLLVGTKGDRDVPYAGAEMAYHS--FRKYSDFVWIKSVSDALD-----HVQAHP 356
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 32.9 bits (75), Expect = 0.12
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 284 PVLVFHSADDVMVSTQQVQSLLNQLK----FCQYYQFSSGGH 321
P ++H+ADD V ++L + + F SG H
Sbjct: 190 PTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPH 231
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 33.1 bits (75), Expect = 0.12
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 279 PYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFC----QYYQFSSGGHSCHIKHG 328
D+P+ VFH+ DD +V + + L+ +L +Y ++ G H
Sbjct: 305 RIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDP 358
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 32.8 bits (75), Expect = 0.14
Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 25/212 (11%)
Query: 152 GRSFVP--FQYIEED--VDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLV 207
G S Y + +A +L+ L + G GG + + P +V +LV
Sbjct: 117 GHSAWREDGNYSPQLNSETLA-PVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELV 175
Query: 208 I------WGTKSFLTIDNVRVFEGMRRLSNWSPM--ARSEVLKAYDNDV---NYITGIFN 256
+ + R + P A ++ A + G+F+
Sbjct: 176 LVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFH 235
Query: 257 QYVDM--------VNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQL 308
+ + I + + + P+ + V+ Q L +
Sbjct: 236 NSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRA 295
Query: 309 KFCQYYQFSSG-GHSCHIKHGQVFNEISRNFI 339
+ GHS + EI R +
Sbjct: 296 THFRGVHIVEKSGHSVQSDQPRALIEIVRGVL 327
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 32.3 bits (73), Expect = 0.17
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 278 LPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKF-CQYYQFSSGGHSCHIKHGQVFNEISR 336
L + P L+ D +V +QV++ +NQ+ ++ S H H + ++ + R
Sbjct: 146 LTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFHGRLIELRELLVR 205
Query: 337 N 337
N
Sbjct: 206 N 206
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich,
structural genomics, PSI-2, prote structure initiative;
1.74A {Klebsiella pneumoniae subsp}
Length = 241
Score = 31.9 bits (73), Expect = 0.20
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 161 IEEDVDIAYELLKLLGVC--KVSLFGWCDGGHLSFVFSMKYP 200
+ D+D G ++ + G+C GG ++++++ P
Sbjct: 96 VLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNP 137
Score = 27.7 bits (62), Expect = 5.6
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 276 ELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLK 309
++ ++ PVL + A D + V+++ L+
Sbjct: 163 DIAVDLNAPVLGLYGAKDASIPQDTVETMRQALR 196
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D
structure, serine esterase, HYD aromatic hydrocarbons,
catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A*
1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A
1ggv_A*
Length = 236
Score = 31.9 bits (73), Expect = 0.21
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 156 VPFQYIEEDVDIAYELLKLLGVC--KVSLFGWCDGGHLSF 193
+ D++ A + KV L G+ GG L+F
Sbjct: 91 FDMEAGVGDLEAAIRYARHQPYSNGKVGLVGYSLGGALAF 130
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 32.2 bits (74), Expect = 0.23
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 166 DIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYPHMVHKLVI 208
D A LL LG+ K + G + + F KY V K I
Sbjct: 88 DQA-ALLDALGIEKAYVVGHDF--AAIVLHKFIRKYSDRVIKAAI 129
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 31.9 bits (73), Expect = 0.27
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 166 DIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYPHMVHKLVI 208
D EL++ LG + L G GG ++ +P V L +
Sbjct: 85 DQR-ELMRTLGFERFHLVGHAR--GGRTGHRMALDHPDSVLSLAV 126
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 31.8 bits (72), Expect = 0.28
Identities = 21/161 (13%), Positives = 39/161 (24%), Gaps = 30/161 (18%)
Query: 161 IEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDNV 220
I + + A + L G GGHL V M P ++ + V ++ + I +
Sbjct: 112 ITQQISQAVTAAAKEIDGPIVLAGHSAGGHL--VARMLDPEVLPEAVGARIRNVVPISPL 169
Query: 221 RVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQELLPY 280
+ R S + + +
Sbjct: 170 SDLRPLLRTSMNEKFKMDA-----------------DAAIAESPVE----------MQNR 202
Query: 281 VDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGH 321
D V V+ + Q L+ + H
Sbjct: 203 YDAKVTVWVGGAERPAFLDQAIWLVEAWD-ADHVIAFEKHH 242
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 31.7 bits (72), Expect = 0.29
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 284 PVLVFHSADDVMVSTQQVQSLLNQLK----FCQYYQFSSGGH 321
P V+ +A D V + + Y+ F SG H
Sbjct: 193 PAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIH 234
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 31.8 bits (73), Expect = 0.30
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 2 DQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLVKKILENQ 43
++++ KR+ F+ + +PRT SGK+ R+ L +K E
Sbjct: 506 ERISGYKRVREVEFV---EELPRTASGKLLRRLLREKEAEGH 544
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 31.8 bits (71), Expect = 0.31
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 282 DVPVLVFHSADDVMVSTQQVQSLLNQLK 309
P L+ S++D V + Q+ + +
Sbjct: 325 QTPTLLCGSSNDATVPLKNAQTAIASFQ 352
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 31.4 bits (72), Expect = 0.32
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 166 DIAYELLKLLGVCKVSLFG--WCDGGHLSFVFSMKYPHMVHKLVI 208
D E++ LG + + G G ++ ++ +PH V KL +
Sbjct: 85 DQV-EVMSKLGYEQFYVVGHDR--GARVAHRLALDHPHRVKKLAL 126
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
structural genom structure 2 function project, S2F,
unknown function; 1.80A {Escherichia coli}
Length = 266
Score = 31.3 bits (70), Expect = 0.36
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 110 FKKQLTAFDPKLFTSIFWDPPGNVVLYL---------LGKTCSGYGQSLPKGRSFVPFQY 160
F QL + V YL L GYG P+GR F+
Sbjct: 182 FVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYG---PRGRDFIVHVD 238
Query: 161 IEEDVDIAYELLK 173
+V A++ LK
Sbjct: 239 FPAEVIHAWQTLK 251
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 31.5 bits (72), Expect = 0.39
Identities = 23/135 (17%), Positives = 35/135 (25%), Gaps = 40/135 (29%)
Query: 101 GVLGEIRN---SFKKQLTAFDPKLFTSIFWDP-------------PGNVVLYLLGKTCSG 144
GV+GEIR+ SF PK I + P LG
Sbjct: 165 GVIGEIRSFAASF-----TIPPKPQGDIRYQADVGGGALLDIGVYPIRAAGLFLGAD--- 216
Query: 145 YGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPHMVH 204
+ V + DV + L G F M++ +
Sbjct: 217 -----LEFVGAVLRHERDRDVVVGGNAL----------LTTRQGVTAQLTFGMEH-AYTN 260
Query: 205 KLVIWGTKSFLTIDN 219
G+ L ++
Sbjct: 261 NYEFRGSTGRLWMNR 275
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 31.2 bits (70), Expect = 0.43
Identities = 7/40 (17%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 271 RNVYQELLPYVDVPVLVFHSADDVMV-STQQVQSLLNQLK 309
+V + + + VP+L+ + + S ++V ++L ++
Sbjct: 213 FDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVR 252
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus} SCOP: c.69.1.39
Length = 131
Score = 30.0 bits (67), Expect = 0.51
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 28/119 (23%)
Query: 75 GFFSIKGCDIRFIKYGSGAQVLFFTYGVLGEIRNSFKKQLTAFDPKLFTSIFWDPPGNVV 134
G+ + G ++ F + G G VL ++ E + + + L P+ + D PG
Sbjct: 5 GYLHLYGLNLVFDRVGKGPPVL-----LVAEEASRWPEAL----PEGYAFYLLDLPGY-- 53
Query: 135 LYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSF 193
GR+ P EE ++ + + G L
Sbjct: 54 -----------------GRTEGPRMAPEELAHFVAGFAVMMNLGAPWVLLRGLGLALGP 95
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 30.6 bits (69), Expect = 0.65
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 281 VDVPVLVFHSADDVMVSTQQVQSLLNQLK-FCQYYQFSSGGHSCHIKHGQVFNEISRNFI 339
+ VL+ D + V + N ++ + GH + F +++ F+
Sbjct: 286 IKGDVLMCVGLMDQVCPPSTVFAAYNNIQSKKDIKVYPDYGHE----PMRGFGDLAMQFM 341
Query: 340 LE 341
LE
Sbjct: 342 LE 343
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 30.6 bits (70), Expect = 0.84
Identities = 4/49 (8%), Positives = 10/49 (20%), Gaps = 6/49 (12%)
Query: 133 VVLYLLGKTCSGYGQSLPKGRSFVPF------QYIEEDVDIAYELLKLL 175
+ KG +++ +EL +
Sbjct: 129 AAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPF 177
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 30.1 bits (67), Expect = 0.92
Identities = 25/168 (14%), Positives = 45/168 (26%), Gaps = 8/168 (4%)
Query: 142 CSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVSLFGWCDGGHLSFVFSMKYPH 201
SG+G S R +++EE + + K L G GG ++ +
Sbjct: 74 YSGHGASGGAFRDGTISRWLEEALAVLDHFKPE----KAILVGSSMGGWIALRLIQELKA 129
Query: 202 MVHKLVIWGTKSFLTIDNVRVFEGMRRLSNWSPMARSEVLKAYDNDVNYITGIFNQYVDM 261
+ I F R+E+ + + +
Sbjct: 130 RHDNPTQ--VSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVS-EYSPEPNIFT 186
Query: 262 VNLIFKSYGRNVYQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLK 309
L+ V ++ PV + D V Q L+ L
Sbjct: 187 RALMEDGRANRVMAGMIDT-GCPVHILQGMADPDVPYQHALKLVEHLP 233
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 30.4 bits (68), Expect = 0.96
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 232 WSPMARSEVLKAYDNDVNYITGIFNQYVDMVNLIFKSYGRNVYQEL-LPYVDVPVLVFHS 290
WS +S +A+D + + + N Y +++ L + VP+ V++
Sbjct: 275 WSQAVKSGKFQAFD----WGSPVQNM---------MHYHQSMPPYYNLTDMHVPIAVWNG 321
Query: 291 ADDVMVSTQQVQSLLNQLK 309
+D++ V LL++L
Sbjct: 322 GNDLLADPHDVDLLLSKLP 340
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 30.1 bits (68), Expect = 0.98
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 144 GYGQS-LPKGRSFVPFQYIEEDVDIAYELLKLLGVCK-VSLFG--WCDGGHLSFVFSMKY 199
G G+S S+ + + + +LL + K + G W G L+F ++ ++
Sbjct: 79 GMGKSGKSGNGSYRLLDHYK-YLT---AWFELLNLPKKIIFVGHDW--GAALAFHYAYEH 132
Query: 200 PHMVHKLVI 208
+ +V
Sbjct: 133 QDRIKAIVH 141
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP,
serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo
sapiens}
Length = 446
Score = 29.9 bits (66), Expect = 1.2
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 145 YGQSLP------KGRSFVPFQYIEEDV-DIAY------ELLKLLGVCKVSLFGWCDGGHL 191
YG+SLP K + F E+ + D A + V G GG L
Sbjct: 80 YGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGML 139
Query: 192 SFVFSMKYPHMVH 204
+ F MKYPHMV
Sbjct: 140 AAWFRMKYPHMVV 152
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 30.2 bits (68), Expect = 1.2
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 271 RNVYQELLP--YVD---VPVLVFHSADDVMVSTQQVQSLLNQLKF----CQYYQFSSGGH 321
Y++ P D VP L+ +D + +Q L + Y F GH
Sbjct: 566 PERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGH 625
>2q88_A EHUB, putative ABC transporter amino acid-binding prote;
substrate-binding protein, compatible solues,
ABC-transporte osmoprotection; HET: 4CS; 1.90A
{Sinorhizobium meliloti} PDB: 2q89_A*
Length = 257
Score = 29.2 bits (66), Expect = 1.9
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV--CKVSLFGWCDG 188
+ PF + D+A E+ K LGV S+ +
Sbjct: 21 NEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISEY-GA 63
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 29.3 bits (66), Expect = 1.9
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV-CKVSLFGWCDG 188
++ PF Y ++ DV++ + + LGV + W D
Sbjct: 66 TYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQW-DS 107
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 29.6 bits (67), Expect = 2.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 22 IPRTMSGKVKRKDLVKKILENQ 43
IPRT SGK R + K+ +
Sbjct: 544 IPRTSSGKPARAEAKKRYQKAY 565
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 29.4 bits (66), Expect = 2.1
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 281 VDVPVLVFHSADDVMVSTQQVQSLLNQLKF----CQYYQFSSGGH 321
+ P+ + H + + + L+ +L + + GH
Sbjct: 512 IKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 28.9 bits (64), Expect = 2.2
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 274 YQELLPYVDVPVLVFHSADDVMVSTQQVQSLLNQLKFCQYYQFSSGGHSCHIKHGQV--- 330
+ +L D+ ++ D VS Q Q LL ++ ++Y S + Q+
Sbjct: 220 HLDLANDKDMVLMNGQVESDSNVSLQDAQLLLLNVQ--RFYGAMGSETSIAKERIQLLED 277
Query: 331 FNEISRNFILEE 342
FN+ S+NF + +
Sbjct: 278 FNKGSQNFDINK 289
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic
protein, arginine protein binding, transport protein;
1.92A {Chlamydia trachomatis}
Length = 242
Score = 28.8 bits (65), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV-CKVSLFGWCDG 188
++ PF+++++ D+D+A E+ LG V F + D
Sbjct: 20 TYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSF-DA 61
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 28.9 bits (65), Expect = 2.6
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 182 LFGWCDGGHLSFVFSMKYPHMVHKLVIWGTKSFLTIDN 219
W DG + S ++ ++ GTK L + +
Sbjct: 228 SLSWEDGRTATIYCSFLA-NLTMEITAIGTKGTLRVHD 264
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 28.8 bits (65), Expect = 2.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 22 IPRTMSGKVKRKDLVKKILENQ 43
+P T SGK++R K +L+
Sbjct: 548 MPHTTSGKIRRNFCRKHLLDKT 569
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella
enterica subsp}
Length = 229
Score = 28.3 bits (64), Expect = 2.8
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV-CKVSLFGWCDG 188
++ P+++++ D+D+A + K + C + + D
Sbjct: 15 TYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSF-DS 56
>3k4u_A Binding component of ABC transporter; structural genomics, protein
structure INI NEW YORK structural genomix research
consortium, nysgxrc; HET: LYS; 2.62A {Wolinella
succinogenes}
Length = 245
Score = 28.4 bits (64), Expect = 3.2
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 7/31 (22%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV 177
++PF+ ++ DVD+A E+ K +GV
Sbjct: 14 GYLPFEMKDKKGNVIGFDVDLAREMAKAMGV 44
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic,
transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae}
PDB: 3g41_A* 3n26_A*
Length = 268
Score = 28.4 bits (64), Expect = 3.3
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV-CKVSLFGWCDG 188
++ PF+Y++ D+D+A + + LG +V F + D
Sbjct: 40 TYPPFEYVDAQGEVVGFDIDLAKAISEKLGKQLEVREFAF-DA 81
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER
bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 28.5 bits (64), Expect = 3.4
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 154 SFVPFQYIEE------DVDIAYELLKLLGV 177
+F PF+Y+++ DVD+ ++K G+
Sbjct: 51 AFAPFEYMQKGKIVGFDVDLLDAVMKAAGL 80
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV 177
+FVP Y E+ D+D+A + KL G+
Sbjct: 30 TFVPMGYEEKDGSYIGFDIDLANAVFKLYGI 60
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 28.1 bits (63), Expect = 4.1
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 144 GYGQSLPKGRSFVPFQYIEEDV--DIAYELLKLLGVC--KVSLFG--WCDGGHLSFVFSM 197
GYG + P ++ + D+ LL+ + KV + W G +++ +
Sbjct: 68 GYGDT-TGAPLNDPSKFSILHLVGDVV-ALLEAIAPNEEKVFVVAHDW--GALIAWHLCL 123
Query: 198 KYPHMVHKLVI 208
P V LV
Sbjct: 124 FRPDKVKALVN 134
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase,
phosphoprotein, transferase; 2.40A {Geobacter
sulfurreducens}
Length = 234
Score = 27.6 bits (62), Expect = 4.7
Identities = 6/40 (15%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV-CKVSLFGW 185
+ P+++I++ +V++ + +++G+ + L W
Sbjct: 20 DYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAW 59
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 28.0 bits (63), Expect = 4.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 20 DFIPRTMSGKVKRKDLVK 37
D +PR GK+ ++ L +
Sbjct: 487 DAVPRNDMGKIMKRALNR 504
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide,
complex (binding protein/peptide); 1.94A {Escherichia
coli} SCOP: c.94.1.1 PDB: 1ggg_A
Length = 226
Score = 27.6 bits (62), Expect = 4.9
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 154 SFVPFQYIEE------DVDIAYELLKLLGV-CKVSLFGWCDG 188
+FVPF++ + DVD+ + K L + ++ + G
Sbjct: 12 AFVPFEFKQGDLYVGFDVDLWAAIAKELKLDYELKPMDF-SG 52
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 28.0 bits (63), Expect = 5.2
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 166 DIAYELLKLLGVCK-VSLFG--WCDGGHLSFVFSMKYPHMVHKLVI 208
+ +L + + L G ++ +K + +LV
Sbjct: 85 YLH-KLARQFSPDRPFDLVAHDI--GIWNTYPMVVKNQADIARLVY 127
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic,
transport protein; 1.90A {Salmonella enterica} PDB:
3r39_A 4f3s_A
Length = 259
Score = 27.7 bits (62), Expect = 5.2
Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 9/43 (20%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV-CKVSLFGWCDG 188
+ P + D+++ + ++ + W DG
Sbjct: 38 ASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAW-DG 79
>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II)
complex, homodimer, lyase; 1.50A {Escherichia coli}
SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A
Length = 135
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/74 (13%), Positives = 21/74 (28%)
Query: 122 FTSIFWDPPGNVVLYLLGKTCSGYGQSLPKGRSFVPFQYIEEDVDIAYELLKLLGVCKVS 181
++ F ++ T + G ++ ++ A E ++ G
Sbjct: 39 YSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTR 98
Query: 182 LFGWCDGGHLSFVF 195
G GG F
Sbjct: 99 EAGPVKGGTTVIAF 112
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine
transport system, protein structure initiative II(PSI
II); 2.06A {Legionella pneumophila subsp}
Length = 237
Score = 27.2 bits (61), Expect = 6.5
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 10/44 (22%)
Query: 154 SFVPFQYIEE--------DVDIAYELLKLLGV-CKVSLFGWCDG 188
PF+ D+D+ E+ + L C + + D
Sbjct: 12 FNPPFEVWSGNNSSLYGFDIDLMQEICRRLHATCTFEAYIF-DD 54
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics,
GLUT seattle structural genomics center for infectious
disease; 2.40A {Burkholderia pseudomallei}
Length = 249
Score = 27.2 bits (61), Expect = 6.5
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 154 SFVPFQYIEE------DVDIAYELLKLLGV 177
SF+PF++ + D+D+ E+ K G
Sbjct: 33 SFMPFEFKQGDKYVGFDLDLWAEIAKGAGW 62
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 27.6 bits (62), Expect = 6.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 23 PRTMSGKVKRKDLVKKILENQGSQK 47
P+T++GK++R L K + G +
Sbjct: 544 PKTVTGKIQRAKLRDKEWKMSGKAR 568
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding
protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP:
c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A*
1hpb_P*
Length = 239
Score = 27.2 bits (61), Expect = 6.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 154 SFVPFQYIEE-------DVDIAYELLKLLGV-CKVSLFGWCDG 188
++ PF + D+D+ E+ K + V C + D
Sbjct: 13 TYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDF-DA 54
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 27.6 bits (61), Expect = 7.7
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 312 QYYQFSSGGHSCHIKHGQVF 331
YY F SGGH G+V
Sbjct: 69 DYYGFWSGGHQ-----GEVR 83
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 27.6 bits (61), Expect = 7.9
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 5/20 (25%)
Query: 312 QYYQFSSGGHSCHIKHGQVF 331
YY F S G S G++
Sbjct: 14 DYYGFWSSGQS-----GEMR 28
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand
binding domain, transport protein; HET: GLU; 2.10A
{Nostoc punctiforme}
Length = 228
Score = 27.2 bits (61), Expect = 8.0
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 154 SFVPFQYIEE------DVDIAYELLKLLGV 177
PF + +D+ + +G+
Sbjct: 11 VIPPFVLSNKGELSGFSIDLWRSIATQIGI 40
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 27.1 bits (61), Expect = 9.3
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 18 SFDFI---PRTMSGKVKRKDLVKK 38
F+ + P T +GK++R L ++
Sbjct: 471 HFEKVDTLPYTSTGKLQRNKLYRE 494
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.433
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,365,062
Number of extensions: 321229
Number of successful extensions: 1153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1094
Number of HSP's successfully gapped: 163
Length of query: 345
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 251
Effective length of database: 4,077,219
Effective search space: 1023381969
Effective search space used: 1023381969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.1 bits)