BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4975
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 16/133 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
++D DGWLH+GD+AY DG FI+ P ELESI QHP + D V
Sbjct: 446 LIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVA 505
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
GIP GELPAAVVV + ++T +EV +V QV SKRL GGV D +P+ ++G
Sbjct: 506 GIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFV--DEVPKGLTG 563
Query: 107 KVKRKDLNETKVM 119
K+ + + E +M
Sbjct: 564 KIDARKIREILMM 576
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
++D DGWLH+GD+AY D FI+ +P ELESI QHP++ D V
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVA 475
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P D GELPAAVVV + ++T +E+ +V QV +K+L GGV D +P+ ++G
Sbjct: 476 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 533
Query: 107 KVKRKDLNE 115
K+ + + E
Sbjct: 534 KLDARKIRE 542
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
++D DGWLH+GD+AY D FI+ +P ELESI QHP++ D V
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 475
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P D GELPAAVVV + ++T +E+ +V QV +K+L GGV D +P+ ++G
Sbjct: 476 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 533
Query: 107 KVKRKDLNE 115
K+ + + E
Sbjct: 534 KLDARKIRE 542
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
++D DGWLH+GD+AY D FI+ +P ELESI QHP++ D V
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P D GELPAAVVV + ++T +E+ +V QV +K+L GGV D +P+ ++G
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 528
Query: 107 KVKRKDLNE 115
K+ + + E
Sbjct: 529 KLDARKIRE 537
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
++D DGWLH+GD+AY D FI+ +P ELESI QHP++ D V
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P D GELPAAVVV + ++T +E+ +V QV +K+L GGV D +P+ ++G
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 528
Query: 107 KVKRKDLNE 115
K+ + + E
Sbjct: 529 KLDARKIRE 537
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
++D++GWLHTGD+ Y + FI+ P ELES+ QHP + D V
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P V GELP AVVV + ++T +EV +V QV+ +KRL GGV D +P+ ++G
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530
Query: 107 KVKRKDLNE 115
K+ + + E
Sbjct: 531 KIDGRAIRE 539
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
++D++GWLHTGD+ Y + FI+ P ELES+ QHP + D V
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P V GELP AVVV + ++T +EV +V QV+ +KRL GGV D +P+ ++G
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530
Query: 107 KVKRKDLNE 115
K+ + + E
Sbjct: 531 KIDGRAIRE 539
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
++D++GWLHTGD+ Y + FI+ P ELES+ QHP + D V
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P V GELP AVVV + ++T +EV +V QV+ +KRL GGV D +P+ ++G
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530
Query: 107 KVKRKDLNE 115
K+ + + E
Sbjct: 531 KIDGRAIRE 539
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 17/126 (13%)
Query: 2 LDDDGWLHTG--------------DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIG 47
+D DGWLHTG D L F ++P ELE++ HPD+ DVAV+
Sbjct: 454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVA 513
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ + GE+P A VV +S ++ ++VKQFV QV KR++ F S IP+ SGK
Sbjct: 514 MKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTES---IPKAPSGK 570
Query: 108 VKRKDL 113
+ RKDL
Sbjct: 571 ILRKDL 576
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 2 LDDDGWLHTG--------------DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIG 47
+D +GWLHTG D L F ++P ELE++ HP++ D AV+G
Sbjct: 407 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG 466
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ + GE+P A VV S T +E+KQ++ QV KR+ F+ + IP+ SGK
Sbjct: 467 LKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFI---EAIPKAPSGK 523
Query: 108 VKRKDLNE 115
+ RK+L E
Sbjct: 524 ILRKNLKE 531
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 61
+D++G+LH D + + I+P ELE++ +H V DVAVIG P + GE+P A +
Sbjct: 426 IDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFI 485
Query: 62 VPKPN--SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK 117
V KP V E++ ++V ++++ KR+ F+ + +PRT SGK+ R+ L E +
Sbjct: 486 VLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFV---EELPRTASGKLLRRLLREKE 540
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 7 WLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDV 52
W+ +GD RLP+G + +SP E+E + QH V + AV+G+ H
Sbjct: 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG 466
Query: 53 FGELPAAVVVPK--PNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+ A VV+ + S + AEE+K FV+D++ P K VF+ D +P+T +GK++R
Sbjct: 467 LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFV---DDLPKTATGKIQR 523
Query: 111 KDLNE 115
L E
Sbjct: 524 FKLRE 528
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 5 DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
+GW HTGD+ DG F + P E+E +QHP + D VIG+
Sbjct: 374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGV 433
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P + E AV V KP S+ A+ + +FV + K+ VF+ + +P+ G +
Sbjct: 434 PDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFV---EALPKDAKGAI 490
Query: 109 KR 110
R
Sbjct: 491 DR 492
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
D+GW TGD+ +G +I + P E+ES+ P V +VAVIG+P
Sbjct: 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLP 447
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
+ +GE+ AA+VV N V+ +++ ++ ++ K +F + IPR +GK+
Sbjct: 448 DEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVIFA---EAIPRNPTGKIL 503
Query: 110 RKDLNE 115
+ L E
Sbjct: 504 KTVLRE 509
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 4 DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
DDG+ TGDL + L G +I+ P E+ES P V + AVIG+P
Sbjct: 374 DDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVP 433
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
H FGE AVVV +++ +V ++ Q+ K +F+ D +PR GKV+
Sbjct: 434 HADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFV---DDLPRNTXGKVQ 490
Query: 110 RKDLNET 116
+ L ET
Sbjct: 491 KNVLRET 497
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 5 DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
DG+ HTGD+A+ DG + + + P E+ES QHP V + A+ G+P
Sbjct: 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPD 510
Query: 51 DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
V G++ A +V + S E++ V++ P K F+ +P+T+SGK
Sbjct: 511 PVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPE---LPKTISGK 567
Query: 108 VKRKDLNE 115
++R ++ +
Sbjct: 568 IRRVEIRD 575
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56 LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A V +P+ + A EV+ +VE ++ P L+ L D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVEKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
L +
Sbjct: 614 ILRK 617
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 2 LDDDGWLHTGDLAY-----------RLPD----GTHFIISPCELESIFRQHPDVEDVAVI 46
L DG+ TGD+A RL D G +I S +LE+ HP V++ AV+
Sbjct: 408 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI-SSVDLENALMGHPKVKEAAVV 466
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
IPH + E P AVVVP+ E + ++ + VF + IPRT +G
Sbjct: 467 AIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFA---EEIPRTSAG 523
Query: 107 KVKRKDLNE 115
K ++ L E
Sbjct: 524 KFLKRALRE 532
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 4 DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
DDG+ TGDL + L G +I+ P E+ES P V + AVIG+P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 50 HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
H FGE A VV S + AEE+ FV D++ +F+ D +PR G
Sbjct: 434 HADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFV---DDLPRNTMG 490
Query: 107 KVKRKDLNET 116
V+ L ET
Sbjct: 491 AVQXNVLRET 500
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW T D+A P+GT I I P E+E + P V +V VIG+
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+G+ A VVP+ +++A+ + F + F+ D +P+ KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
+ L
Sbjct: 496 RQL 498
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW T D+A P+GT I I P E+E + P V +V VIG+
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+G+ A VVP+ +++A+ + F + F+ D +P+ KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
+ L
Sbjct: 496 RQL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW T D+A P+GT I I P E+E + P V +V VIG+
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+G+ A VVP+ +++A+ + F + F+ D +P+ KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
+ L
Sbjct: 496 RQL 498
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW T D+A P+GT I I P E+E + P V +V VIG+
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+G+ A VVP+ +++A+ + F + F+ D +P+ KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
+ L
Sbjct: 496 RQL 498
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW T D+A P+GT I I P E+E + P V +V VIG+
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+G+ A VVP+ +++A+ + F + F+ D +P+ KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
+ L
Sbjct: 496 RQL 498
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56 LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A V +P+ + A EV+ +V ++ P L+ L D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
L +
Sbjct: 614 ILRK 617
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56 LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A V +P+ + A EV+ +V ++ P L+ L D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
L +
Sbjct: 614 ILRK 617
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56 LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A V +P+ + A EV+ +V ++ P L+ L D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
L +
Sbjct: 614 ILRK 617
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56 LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A V +P+ + A EV+ +V ++ P L+ L D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
L +
Sbjct: 614 ILRK 617
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW T D+A P+GT I I P E+E + P V +V VIG+
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+G+ A VVP+ +++A+ + F + F+ D +P+ KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
+ L
Sbjct: 496 RQL 498
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56 LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A V +P+ + A EV+ +V ++ P L+ L D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVAKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
L +
Sbjct: 614 ILRK 617
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 4 DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
DDG+ TGDL + L G +I+ P E+ES P V + AVIG+P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
H FGE AVVV +++ +V ++ Q+ +F+ D +PR G V+
Sbjct: 434 HADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFV---DDLPRNTMGAVQ 490
Query: 110 RKDLNET 116
L ET
Sbjct: 491 XNVLRET 497
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+GD A R DG ++I + E+ES HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56 LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A V +P+ + A EV+ +V ++ P L+ L D +P+T SG + R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGAIMRR 613
Query: 112 DLNE 115
L +
Sbjct: 614 ILRK 617
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 62
D+DG+ A + + + + I P E+E+ +HP V + AVI P V GE+ A VV
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 63 PKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
+ +E++Q V+ P K F+ + +P+T++GK++R L +
Sbjct: 504 LASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN---LPKTVTGKIQRAKLRD 558
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 62
D+DG+ A + + + + I P E+E+ +HP V + AVI P V GE+ A VV
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 63 PKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
+ +E++Q V+ P K F+ + +P+T++GK++R L +
Sbjct: 504 LASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN---LPKTVTGKIQRAKLRD 558
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 4 DDGWLHTGDLAYRLPDG---------THFI------ISPCELESIFRQHPDVEDVAVIGI 48
+DG+ TGD+A R PDG T I I E+E+ +HP+V + AV G
Sbjct: 380 EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439
Query: 49 PHDVFGE-LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
P GE + A +V P + + V ++ P KR +L D +PR GK
Sbjct: 440 PDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYL---DAVPRNDMGK 496
Query: 108 VKRKDLN 114
+ ++ LN
Sbjct: 497 IMKRALN 503
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
+DG+ TGD+ DG + ++ E+E+ HP V D A++ +P
Sbjct: 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP 464
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-FLCSFDFIPRTMSGKV 108
GE ++P+ + + A E+K F+ ++ + ++ V F+ SF P+T GKV
Sbjct: 465 DQFLGERSCVFIIPR-DEAPKAAELKAFLRERGLAAYKIPDRVEFVESF---PQTGVGKV 520
Query: 109 KRKDLNET 116
+K L E
Sbjct: 521 SKKALREA 528
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
+ D+D + ++GDL R PDG + I+ E+E + HP+V A++
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV 470
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
I + FGE A +V + N + A +++ + + +L + L + +P T G
Sbjct: 471 AIVDEQFGEKSCAFIVSR-NPELKAVVLRRHLMELGIAQYKLPDQIKL--IESLPLTAVG 527
Query: 107 KVKRKDL 113
KV +K L
Sbjct: 528 KVDKKQL 534
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 4 DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
DDG+ TGDL + L G +I+ P E+ES P V + AVIG+P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
H FGE A VV + + +V ++ Q+ +F+ D +PR G V+
Sbjct: 434 HADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFV---DDLPRNTMGAVQ 490
Query: 110 RKDLNET 116
L ET
Sbjct: 491 XNVLRET 497
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
+DG+ TGD+ DG + ++ E+E+ HP V D A + P
Sbjct: 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXP 464
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-FLCSFDFIPRTMSGKV 108
GE ++P+ + + A E+K F+ ++ + ++ V F+ SF P+T GKV
Sbjct: 465 DQFLGERSCVFIIPR-DEAPKAAELKAFLRERGLAAYKIPDRVEFVESF---PQTGVGKV 520
Query: 109 KRKDLNE 115
+K L E
Sbjct: 521 SKKALRE 527
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
++G+ +TGD+A +G I I P ++E++ +Q P + D +G P
Sbjct: 373 ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHP 432
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
D +G++P V + S ++ ++ ++ + K D +P T +GK++
Sbjct: 433 DDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPK---HFEKVDTLPYTSTGKLQ 487
Query: 110 RKDL 113
R L
Sbjct: 488 RNKL 491
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHD 51
G+ TGD A + DG +I+ S E+E+ + P V + AV+G D
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 52 VFGELPAAVVVPKPNSS---VTAEEVKQFVEDQVNPSKR----LSGGVFLCSFDFIPRTM 104
+ G+ AA VV K SS T +E++ + V ++ + + D +P+T
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622
Query: 105 SGKVKRKDLNETKVMRHDDV 124
SGK+ R+ L + D +
Sbjct: 623 SGKIMRRILRKILAGESDQL 642
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
D +G+ +GDL P+G + I+ E+E++ +HP V A++
Sbjct: 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVS 466
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ ++ GE A +V K + A +V++F+ +Q +L V D +P T GK
Sbjct: 467 MEDELMGEKSCAYLVVK--EPLRAVQVRRFLREQGIAEFKLPDRVE--CVDSLPLTAVGK 522
Query: 108 VKRKDLNE 115
V +K L +
Sbjct: 523 VDKKQLRQ 530
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 10 TGDLAYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA LPDGT I E+E +++P V+D V+ H+
Sbjct: 842 TGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDA 901
Query: 56 LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
A +V + + ++AE+VK ++ Q+ FL D +P T +GKV ++ L
Sbjct: 902 SINAYLVNR--TQLSAEDVKAHLKKQLPAYMVPQTFTFL---DELPLTTNGKVNKRLL 954
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 10 TGDLAYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFG- 54
TGDLA R DG F + P E+E+ HP V AV+ +
Sbjct: 450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDK 509
Query: 55 ELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
+L A VV + ++ A E+++ V + + P+ + V D +PRT +GK+ R+ L
Sbjct: 510 QLVAYVVAERADAPPDAAELRRHVAEAL-PAYMVP--VECVPVDELPRTPNGKLDRRAL 565
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 33 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
I R+ PD E++ I P D+FGEL P+ +S+ T EV+ D+
Sbjct: 82 IGRRAPDGRENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 131
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 15/49 (30%)
Query: 6 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDV 40
GWL TGDL Y L DG ++ I P ++E I Q P++
Sbjct: 438 GWLDTGDLGYLL-DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEI 485
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 33 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
I R+ PD E++ I P D+FGEL P+ +S+ T EV+ D+
Sbjct: 57 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 106
>pdb|2D9R|A Chain A, Structure Of Conserved Protein Of Unknown Function
Pg0164 From Porphyromonas Gingivalis [w83]
Length = 104
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 26 SPCELESIFRQHPDVEDVAVIGIPHDV 52
SP E ++I RQ PD D A + IP DV
Sbjct: 20 SPIEFDAIIRQVPD-XDAAYVEIPFDV 45
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 33 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
I R+ PD E++ I P D+FGEL P+ +S+ T EV+ D+
Sbjct: 58 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 107
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 33 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
I R+ PD E++ I P D+FGEL P+ +S+ T EV+ D+
Sbjct: 82 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 131
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 33 IFRQHPD-VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
I R+ PD E++ I P D+FGEL P+ +S+ T EV+ D+
Sbjct: 60 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 109
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 175 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 206
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 193
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 193
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 175 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 206
>pdb|1ELJ|A Chain A, The Crystal Structure Of Liganded Maltodextrin-Binding
Protein From Pyrococcus Furiosus
Length = 381
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 29 ELESIFRQHPDVEDVAVIGIP-----------HDVFGELPAAVVVPKPNSSVTAEEVKQF 77
E+E +F Q P++ED IP HD G+ A ++ + VT + + +F
Sbjct: 35 EVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLEPIDEYVTEDLLNEF 94
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 193
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 193
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 193
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 162 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 193
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 79
IP D++G+LP + + +S+ ++++F E
Sbjct: 158 IPKDLYGDLPYSTTASRKWNSLLTTKLREFAE 189
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 11 GDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70
GD Y++ P E E + PD+E + V P D F L + + +T
Sbjct: 204 GDHGYKMNKSL-----PAE-EQMISALPDIEKITVG--PEDEFMVLACDGIW----NFMT 251
Query: 71 AEEVKQFVEDQVN-PSKRLS 89
+E+V QFV++++N P +LS
Sbjct: 252 SEQVVQFVQERINKPGMKLS 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,129,640
Number of Sequences: 62578
Number of extensions: 164911
Number of successful extensions: 424
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 66
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)