Query psy4975
Match_columns 126
No_of_seqs 104 out of 1225
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 22:37:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176|consensus 100.0 3E-31 6.6E-36 198.6 12.4 116 2-120 404-533 (537)
2 PRK09188 serine/threonine prot 99.9 1.8E-25 3.9E-30 161.3 14.3 111 4-121 207-330 (365)
3 COG0318 CaiC Acyl-CoA syntheta 99.9 3.2E-25 7E-30 167.2 12.8 115 2-119 397-527 (534)
4 PRK07445 O-succinylbenzoic aci 99.9 4.5E-24 9.7E-29 158.2 14.3 116 3-122 321-450 (452)
5 PLN02654 acetate-CoA ligase 99.9 9.1E-24 2E-28 162.8 15.1 113 5-120 512-641 (666)
6 KOG1175|consensus 99.9 4.2E-24 9E-29 161.2 11.9 113 5-120 474-603 (626)
7 TIGR01217 ac_ac_CoA_syn acetoa 99.9 9.9E-24 2.1E-28 162.3 14.2 113 5-120 498-627 (652)
8 COG0365 Acs Acyl-coenzyme A sy 99.9 6.9E-24 1.5E-28 158.7 12.5 110 7-119 397-522 (528)
9 PLN02860 o-succinylbenzoate-Co 99.9 1.3E-23 2.8E-28 159.0 13.6 120 2-123 410-558 (563)
10 PRK07824 O-succinylbenzoic aci 99.9 2E-23 4.3E-28 150.2 13.7 114 2-119 230-357 (358)
11 PTZ00237 acetyl-CoA synthetase 99.9 2.2E-23 4.8E-28 160.3 14.1 113 5-120 491-624 (647)
12 PRK03584 acetoacetyl-CoA synth 99.9 3.5E-23 7.5E-28 159.1 14.4 114 5-121 497-627 (655)
13 TIGR02316 propion_prpE propion 99.9 2.1E-23 4.5E-28 159.8 13.0 115 4-121 470-606 (628)
14 TIGR02188 Ac_CoA_lig_AcsA acet 99.9 4.8E-23 1E-27 157.5 14.4 114 4-120 473-603 (625)
15 PRK07529 AMP-binding domain pr 99.9 3.7E-23 8.1E-28 158.6 13.9 115 3-120 442-571 (632)
16 PLN03051 acyl-activating enzym 99.9 3.8E-23 8.2E-28 154.6 13.5 115 5-122 356-494 (499)
17 PLN02574 4-coumarate--CoA liga 99.9 3.7E-23 7.9E-28 156.5 13.4 116 2-120 426-555 (560)
18 PRK07868 acyl-CoA synthetase; 99.9 3.3E-23 7.2E-28 165.4 13.2 111 4-119 834-958 (994)
19 PRK07788 acyl-CoA synthetase; 99.9 3.4E-23 7.4E-28 156.1 12.4 110 4-116 425-548 (549)
20 PRK00174 acetyl-CoA synthetase 99.9 9.5E-23 2.1E-27 156.2 14.4 114 4-120 481-611 (637)
21 PRK09088 acyl-CoA synthetase; 99.9 1.2E-22 2.5E-27 151.1 14.1 116 2-120 357-486 (488)
22 KOG1177|consensus 99.9 6.8E-23 1.5E-27 149.1 12.2 117 2-121 457-589 (596)
23 PRK05677 long-chain-fatty-acid 99.9 1.2E-22 2.5E-27 153.7 13.6 116 2-120 429-558 (562)
24 PRK05852 acyl-CoA synthetase; 99.9 1.1E-22 2.5E-27 152.8 13.0 113 5-120 407-533 (534)
25 PRK08279 long-chain-acyl-CoA s 99.9 1.4E-22 3.1E-27 154.2 12.1 114 4-120 437-565 (600)
26 PRK10524 prpE propionyl-CoA sy 99.9 2.9E-22 6.2E-27 153.4 13.8 115 4-121 471-607 (629)
27 PRK06839 acyl-CoA synthetase; 99.9 3.9E-22 8.4E-27 148.2 13.9 113 4-119 369-495 (496)
28 PLN02330 4-coumarate--CoA liga 99.9 4.1E-22 8.9E-27 150.2 13.8 117 2-121 413-543 (546)
29 PLN03102 acyl-activating enzym 99.9 2.7E-22 5.9E-27 152.4 12.7 114 5-121 419-556 (579)
30 PRK12583 acyl-CoA synthetase; 99.9 7.7E-22 1.7E-26 148.6 15.0 118 3-123 425-556 (558)
31 PLN02246 4-coumarate--CoA liga 99.9 4E-22 8.7E-27 150.0 13.2 115 2-119 408-536 (537)
32 PRK09029 O-succinylbenzoic aci 99.9 5.2E-22 1.1E-26 146.8 12.7 114 3-122 329-456 (458)
33 PRK07470 acyl-CoA synthetase; 99.9 8.1E-22 1.7E-26 147.9 13.7 113 5-120 393-519 (528)
34 PRK06155 crotonobetaine/carnit 99.9 7.4E-22 1.6E-26 148.9 13.5 112 4-118 398-523 (542)
35 PRK06060 acyl-CoA synthetase; 99.9 5.4E-22 1.2E-26 153.7 12.9 113 3-118 362-491 (705)
36 COG1021 EntE Peptide arylation 99.9 2.6E-22 5.6E-27 143.7 10.1 117 1-121 409-540 (542)
37 PRK05620 long-chain-fatty-acid 99.9 9.8E-22 2.1E-26 149.1 13.7 115 3-120 427-558 (576)
38 PRK07867 acyl-CoA synthetase; 99.9 9.8E-22 2.1E-26 148.0 13.4 112 5-119 380-507 (529)
39 PRK08314 long-chain-fatty-acid 99.9 1.3E-21 2.8E-26 147.2 13.4 115 4-121 414-544 (546)
40 PRK07798 acyl-CoA synthetase; 99.9 1.4E-21 3E-26 146.2 13.4 113 4-119 406-532 (533)
41 PRK06018 putative acyl-CoA syn 99.9 1.6E-21 3.4E-26 147.0 13.7 114 3-119 407-534 (542)
42 PRK10946 entE enterobactin syn 99.9 1.6E-21 3.5E-26 146.8 13.6 115 2-121 405-534 (536)
43 PRK06145 acyl-CoA synthetase; 99.9 1.7E-21 3.7E-26 145.0 13.5 111 5-118 372-496 (497)
44 PRK07008 long-chain-fatty-acid 99.9 1.2E-21 2.6E-26 147.6 12.8 112 5-119 408-533 (539)
45 PRK07638 acyl-CoA synthetase; 99.9 1.2E-21 2.7E-26 145.6 12.6 112 3-121 358-483 (487)
46 PRK13295 cyclohexanecarboxylat 99.9 2.5E-21 5.5E-26 146.0 14.4 114 4-120 417-545 (547)
47 PRK08316 acyl-CoA synthetase; 99.9 1.9E-21 4.2E-26 145.2 13.6 116 4-122 393-522 (523)
48 PRK04319 acetyl-CoA synthetase 99.9 1.3E-21 2.9E-26 148.2 12.7 112 5-119 431-559 (570)
49 PRK08008 caiC putative crotono 99.9 1.2E-21 2.6E-26 146.5 12.3 110 2-114 394-517 (517)
50 PRK13388 acyl-CoA synthetase; 99.9 2.3E-21 5E-26 146.2 13.5 113 5-120 379-507 (540)
51 PRK05605 long-chain-fatty-acid 99.9 3E-21 6.4E-26 146.2 13.9 114 5-121 444-571 (573)
52 TIGR02275 DHB_AMP_lig 2,3-dihy 99.9 1.7E-21 3.8E-26 146.2 12.4 109 2-114 404-527 (527)
53 PRK13382 acyl-CoA synthetase; 99.9 1.6E-21 3.6E-26 146.9 12.3 108 5-115 415-536 (537)
54 PRK05857 acyl-CoA synthetase; 99.9 1.8E-21 3.9E-26 146.8 12.4 117 5-124 401-536 (540)
55 PRK08043 bifunctional acyl-[ac 99.9 3.4E-21 7.4E-26 149.6 13.8 111 4-120 589-714 (718)
56 PRK07514 malonyl-CoA synthase; 99.9 5.1E-21 1.1E-25 142.6 13.9 115 2-119 373-501 (504)
57 PRK07787 acyl-CoA synthetase; 99.9 2.9E-21 6.2E-26 143.3 12.3 109 3-116 347-470 (471)
58 PRK06710 long-chain-fatty-acid 99.9 4.5E-21 9.8E-26 145.0 13.3 116 5-123 430-559 (563)
59 PRK08315 AMP-binding domain pr 99.9 6.6E-21 1.4E-25 143.7 14.1 117 3-122 424-554 (559)
60 PRK13390 acyl-CoA synthetase; 99.9 3E-21 6.6E-26 144.0 12.1 107 5-114 378-501 (501)
61 PRK06164 acyl-CoA synthetase; 99.9 7.5E-21 1.6E-25 143.0 13.7 117 2-122 402-535 (540)
62 PRK06188 acyl-CoA synthetase; 99.9 8.1E-21 1.8E-25 142.4 13.9 113 4-119 391-517 (524)
63 PLN03052 acetate--CoA ligase; 99.9 5.8E-21 1.3E-25 148.6 13.4 114 4-120 587-722 (728)
64 PRK08276 long-chain-fatty-acid 99.9 9.4E-21 2E-25 141.3 13.6 117 4-123 367-500 (502)
65 PRK07656 long-chain-fatty-acid 99.9 6.5E-21 1.4E-25 142.1 12.7 110 3-115 389-512 (513)
66 PRK12406 long-chain-fatty-acid 99.9 1.4E-20 3E-25 140.7 14.3 118 3-123 376-507 (509)
67 TIGR03208 cyc_hxne_CoA_lg cycl 99.9 6.1E-21 1.3E-25 143.6 12.2 109 3-114 414-537 (538)
68 PRK06178 acyl-CoA synthetase; 99.9 8.7E-21 1.9E-25 143.5 12.9 111 5-119 441-565 (567)
69 TIGR01734 D-ala-DACP-lig D-ala 99.9 8.7E-21 1.9E-25 141.3 12.7 111 4-118 372-501 (502)
70 PRK12492 long-chain-fatty-acid 99.9 1.2E-20 2.6E-25 142.8 13.1 111 2-116 437-561 (562)
71 PRK08751 putative long-chain f 99.9 9.7E-21 2.1E-25 143.0 12.4 110 3-116 434-557 (560)
72 PRK05851 long-chain-fatty-acid 99.9 5.4E-21 1.2E-25 143.7 11.0 112 3-119 393-522 (525)
73 TIGR03098 ligase_PEP_1 acyl-Co 99.9 1.2E-20 2.7E-25 140.8 12.7 108 5-115 393-514 (515)
74 PRK06087 short chain acyl-CoA 99.9 1.6E-20 3.5E-25 141.4 13.4 117 3-122 407-539 (547)
75 PRK07769 long-chain-fatty-acid 99.9 6.2E-21 1.3E-25 146.1 11.1 115 4-120 462-615 (631)
76 PRK09274 peptide synthase; Pro 99.9 8.3E-21 1.8E-25 143.2 11.6 114 3-120 415-549 (552)
77 PRK08308 acyl-CoA synthetase; 99.9 1.6E-20 3.4E-25 137.5 12.8 106 4-114 289-408 (414)
78 PRK07786 long-chain-fatty-acid 99.8 2.5E-20 5.4E-25 140.5 13.7 115 5-122 398-527 (542)
79 PLN02736 long-chain acyl-CoA s 99.8 2.4E-21 5.3E-26 149.0 8.3 118 2-125 483-647 (651)
80 PRK06334 long chain fatty acid 99.8 1.3E-20 2.8E-25 142.3 12.0 109 3-120 407-536 (539)
81 PRK13383 acyl-CoA synthetase; 99.8 2.5E-20 5.4E-25 139.7 12.6 107 5-114 395-515 (516)
82 PRK06187 long-chain-fatty-acid 99.8 5.5E-20 1.2E-24 137.1 13.8 112 5-119 394-519 (521)
83 PRK06814 acylglycerophosphoeth 99.8 3.4E-20 7.3E-25 149.6 13.4 114 4-123 1008-1136(1140)
84 PRK03640 O-succinylbenzoic aci 99.8 4.4E-20 9.5E-25 136.9 13.0 111 4-119 358-482 (483)
85 PRK07059 Long-chain-fatty-acid 99.8 4.7E-20 1E-24 139.3 13.1 111 2-116 431-555 (557)
86 PRK13391 acyl-CoA synthetase; 99.8 6.5E-20 1.4E-24 137.2 13.3 113 5-120 381-510 (511)
87 TIGR03443 alpha_am_amid L-amin 99.8 1.7E-20 3.8E-25 153.6 10.9 110 4-116 676-825 (1389)
88 PRK08162 acyl-CoA synthetase; 99.8 8.3E-20 1.8E-24 137.5 13.6 114 5-122 415-542 (545)
89 PRK08633 2-acyl-glycerophospho 99.8 1.1E-19 2.3E-24 146.4 13.6 111 4-120 1017-1144(1146)
90 PRK04813 D-alanine--poly(phosp 99.8 1.4E-19 3E-24 134.7 13.0 111 4-118 374-502 (503)
91 PRK12476 putative fatty-acid-- 99.8 8.2E-20 1.8E-24 139.6 11.3 113 5-120 475-607 (612)
92 PRK08974 long-chain-fatty-acid 99.8 2.2E-19 4.9E-24 135.7 13.1 113 4-120 430-556 (560)
93 PRK09192 acyl-CoA synthetase; 99.8 1.7E-19 3.6E-24 137.1 12.3 121 2-125 435-572 (579)
94 PRK12316 peptide synthase; Pro 99.8 1.1E-19 2.4E-24 160.7 11.5 110 4-117 2379-2502(5163)
95 TIGR01923 menE O-succinylbenzo 99.8 2.4E-19 5.1E-24 131.5 11.3 105 4-113 318-436 (436)
96 PRK12316 peptide synthase; Pro 99.8 1.7E-19 3.6E-24 159.6 11.9 109 3-118 883-1005(5163)
97 PRK12467 peptide synthase; Pro 99.8 9E-20 1.9E-24 159.3 9.7 112 4-119 3469-3594(3956)
98 PLN02479 acetate-CoA ligase 99.8 4.3E-19 9.4E-24 134.5 12.2 111 5-119 429-558 (567)
99 PRK10252 entF enterobactin syn 99.8 5.1E-19 1.1E-23 144.1 12.6 110 4-116 835-964 (1296)
100 TIGR03205 pimA dicarboxylate-- 99.8 5.6E-19 1.2E-23 133.1 11.8 107 5-114 420-541 (541)
101 TIGR02262 benz_CoA_lig benzoat 99.8 1.9E-18 4.1E-23 129.2 11.6 109 5-116 383-508 (508)
102 PRK12467 peptide synthase; Pro 99.8 8.8E-19 1.9E-23 153.2 10.3 112 4-119 1952-2085(3956)
103 PRK05691 peptide synthase; Val 99.8 5.1E-18 1.1E-22 149.2 12.5 109 4-116 1503-1625(4334)
104 PRK05691 peptide synthase; Val 99.8 4.7E-18 1E-22 149.5 11.7 110 4-117 2566-2695(4334)
105 PLN02614 long-chain acyl-CoA s 99.8 2.7E-18 5.9E-23 132.7 8.0 117 5-125 495-655 (666)
106 PLN02861 long-chain-fatty-acid 99.7 5.5E-18 1.2E-22 130.8 9.2 117 5-125 492-652 (660)
107 PRK05850 acyl-CoA synthetase; 99.7 1.3E-17 2.9E-22 126.5 10.7 112 5-120 436-569 (578)
108 PRK08180 feruloyl-CoA synthase 99.7 1.9E-18 4E-23 132.3 6.1 118 2-126 436-603 (614)
109 PRK07768 long-chain-fatty-acid 99.7 2.7E-17 5.9E-22 124.0 10.5 115 3-118 411-544 (545)
110 PLN02387 long-chain-fatty-acid 99.7 2.2E-17 4.7E-22 128.2 9.6 116 6-125 535-695 (696)
111 PLN02430 long-chain-fatty-acid 99.7 1.8E-17 3.8E-22 128.1 8.7 118 4-125 491-652 (660)
112 TIGR02372 4_coum_CoA_lig 4-cou 99.7 1.9E-16 4.2E-21 115.7 11.9 96 6-109 275-386 (386)
113 PTZ00216 acyl-CoA synthetase; 99.7 9.1E-17 2E-21 124.8 8.5 120 2-125 532-697 (700)
114 PF13193 AMP-binding_C: AMP-bi 99.7 2.2E-16 4.8E-21 90.0 6.8 72 29-107 1-73 (73)
115 PTZ00342 acyl-CoA synthetase; 99.7 4.8E-16 1E-20 121.5 9.4 115 2-121 566-736 (746)
116 PRK12582 acyl-CoA synthetase; 99.6 2.1E-16 4.6E-21 121.2 6.0 117 2-125 448-613 (624)
117 KOG1256|consensus 99.6 3.9E-15 8.5E-20 113.4 7.9 121 1-125 522-686 (691)
118 KOG1179|consensus 99.5 1.8E-14 3.8E-19 107.3 7.9 111 4-117 486-611 (649)
119 KOG1180|consensus 99.5 1.1E-13 2.5E-18 102.9 6.8 117 5-125 512-675 (678)
120 KOG1178|consensus 99.4 3.1E-13 6.8E-18 107.3 8.3 113 4-120 452-579 (1032)
121 COG1022 FAA1 Long-chain acyl-C 99.4 4.3E-13 9.4E-18 102.4 7.8 119 1-124 444-606 (613)
122 TIGR02155 PA_CoA_ligase phenyl 99.2 1.8E-10 4E-15 84.9 9.4 102 5-111 288-418 (422)
123 TIGR01733 AA-adenyl-dom amino 98.5 9.8E-08 2.1E-12 69.5 4.2 39 7-45 356-408 (408)
124 PTZ00297 pantothenate kinase; 98.5 3.6E-07 7.8E-12 76.2 7.6 95 26-125 871-1001(1452)
125 PF14535 AMP-binding_C_2: AMP- 98.1 1.1E-05 2.4E-10 48.0 5.1 84 26-110 5-91 (96)
126 KOG3628|consensus 97.8 0.00018 3.9E-09 58.4 9.2 110 3-119 1216-1351(1363)
127 COG1541 PaaK Coenzyme F390 syn 97.0 0.015 3.2E-07 43.7 10.0 102 8-110 304-430 (438)
128 TIGR03335 F390_ftsA coenzyme F 96.8 0.025 5.4E-07 42.5 10.0 84 26-110 341-440 (445)
129 KOG3628|consensus 93.9 0.69 1.5E-05 38.8 8.9 108 5-119 570-704 (1363)
130 PF09580 Spore_YhcN_YlaJ: Spor 71.0 22 0.00048 23.2 5.8 53 26-84 76-128 (177)
131 COG1020 EntF Non-ribosomal pep 66.1 4.9 0.00011 31.4 2.2 20 6-25 596-615 (642)
132 PF06970 RepA_N: Replication i 57.1 12 0.00026 21.2 2.2 21 14-34 41-62 (76)
133 KOG1556|consensus 56.3 4.1 8.8E-05 28.6 0.2 24 5-37 93-116 (309)
134 PF15121 TMEM71: TMEM71 protei 53.7 15 0.00032 23.3 2.3 21 5-25 67-88 (149)
135 COG0120 RpiA Ribose 5-phosphat 53.1 25 0.00055 24.4 3.6 33 15-47 168-207 (227)
136 TIGR02898 spore_YhcN_YlaJ spor 52.5 63 0.0014 21.1 6.4 53 27-84 56-109 (158)
137 PRK13978 ribose-5-phosphate is 50.0 56 0.0012 22.7 4.9 40 7-46 161-208 (228)
138 PRK14588 tRNA pseudouridine sy 49.8 92 0.002 22.1 6.9 56 27-84 28-85 (272)
139 PF00036 EF-hand_1: EF hand; 49.6 16 0.00035 16.3 1.6 21 99-119 8-28 (29)
140 PF12433 PV_NSP1: Parvovirus n 49.0 11 0.00024 21.3 1.1 15 4-18 38-52 (80)
141 PRK12434 tRNA pseudouridine sy 47.7 94 0.002 21.7 6.9 55 28-84 30-86 (245)
142 KOG3432|consensus 46.6 68 0.0015 19.7 5.6 87 8-116 22-114 (121)
143 PRK00021 truA tRNA pseudouridi 46.1 99 0.0021 21.5 6.7 56 27-84 28-85 (244)
144 cd08047 TAF7 TATA Binding Prot 45.5 10 0.00022 24.7 0.8 16 1-16 66-81 (162)
145 PF02839 CBM_5_12: Carbohydrat 44.4 38 0.00082 16.2 2.7 21 3-25 5-25 (41)
146 PLN02384 ribose-5-phosphate is 44.3 72 0.0016 22.7 4.8 35 12-46 202-244 (264)
147 TIGR00071 hisT_truA pseudourid 44.1 1E+02 0.0023 21.1 6.6 56 27-84 27-84 (227)
148 cd02568 PseudoU_synth_PUS1_PUS 42.2 86 0.0019 21.8 5.0 57 27-83 24-94 (245)
149 PF04658 TAFII55_N: TAFII55 pr 41.6 14 0.0003 24.2 0.9 16 1-16 68-83 (162)
150 PRK00702 ribose-5-phosphate is 41.4 92 0.002 21.4 5.0 33 14-46 163-202 (220)
151 cd08065 MPN_eIF3h Mpr1p, Pad1p 39.6 70 0.0015 22.6 4.3 32 5-44 82-113 (266)
152 PF13202 EF-hand_5: EF hand; P 38.4 32 0.0007 14.7 1.6 18 99-116 7-24 (25)
153 PF08255 Leader_Trp: Trp-opero 38.4 13 0.00027 13.9 0.2 6 5-10 8-13 (14)
154 PF06026 Rib_5-P_isom_A: Ribos 37.3 52 0.0011 21.8 3.1 32 16-47 120-158 (173)
155 PF00403 HMA: Heavy-metal-asso 36.7 65 0.0014 16.7 4.8 46 27-80 13-58 (62)
156 PF14597 Lactamase_B_5: Metall 36.7 54 0.0012 22.2 3.1 45 4-48 128-180 (199)
157 cd02570 PseudoU_synth_EcTruA P 36.2 1.5E+02 0.0031 20.5 6.4 57 27-84 23-80 (239)
158 PF13405 EF-hand_6: EF-hand do 35.1 39 0.00085 14.9 1.7 19 100-118 9-27 (31)
159 PF11253 DUF3052: Protein of u 33.8 95 0.0021 19.6 3.7 34 14-48 69-112 (127)
160 PF09926 DUF2158: Uncharacteri 33.6 32 0.00069 18.1 1.4 13 8-20 1-13 (53)
161 COG3811 Uncharacterized protei 33.0 16 0.00035 20.8 0.2 11 1-11 35-45 (85)
162 TIGR00021 rpiA ribose 5-phosph 33.0 1.6E+02 0.0036 20.2 5.2 32 15-46 163-202 (218)
163 PF08976 DUF1880: Domain of un 31.7 36 0.00079 21.1 1.6 23 98-120 14-36 (118)
164 PF10955 DUF2757: Protein of u 30.6 97 0.0021 17.6 3.1 29 12-40 39-68 (76)
165 PF08887 GAD-like: GAD-like do 30.6 1.1E+02 0.0024 18.6 3.6 19 19-37 50-68 (109)
166 COG5475 Uncharacterized small 30.2 44 0.00096 17.8 1.5 14 7-20 4-17 (60)
167 cd01398 RPI_A RPI_A: Ribose 5- 29.3 1E+02 0.0022 21.0 3.7 32 15-46 164-202 (213)
168 PF09857 DUF2084: Uncharacteri 29.2 23 0.00049 20.5 0.4 11 1-11 35-45 (85)
169 PRK14586 tRNA pseudouridine sy 28.7 2.1E+02 0.0045 20.0 7.0 57 27-84 28-86 (245)
170 PF05673 DUF815: Protein of un 28.5 1.9E+02 0.0041 20.5 4.9 56 59-123 82-137 (249)
171 PRK13687 hypothetical protein; 27.9 22 0.00048 20.5 0.2 11 1-11 35-45 (85)
172 TIGR03369 cellulose_bcsE cellu 27.6 75 0.0016 23.4 2.8 31 7-38 260-294 (322)
173 PF06092 DUF943: Enterobacteri 27.3 34 0.00073 22.4 1.0 13 97-109 46-58 (157)
174 KOG1407|consensus 27.1 91 0.002 22.5 3.1 42 5-48 153-197 (313)
175 COG3918 Predicted membrane pro 25.5 38 0.00083 21.1 0.9 15 97-111 62-76 (153)
176 PF11519 DUF3222: Protein of u 25.2 23 0.00049 19.4 -0.1 12 7-18 44-55 (74)
177 PF14326 DUF4384: Domain of un 25.1 1.4E+02 0.003 16.8 3.9 20 42-61 59-78 (83)
178 PF04972 BON: BON domain; Int 23.9 1.2E+02 0.0026 15.7 3.3 41 4-44 10-57 (64)
179 PF10995 DUF2819: Protein of u 23.6 1.3E+02 0.0028 22.1 3.4 32 6-38 254-289 (316)
180 PF01037 AsnC_trans_reg: AsnC 23.1 1.3E+02 0.0029 15.8 6.4 49 27-85 12-60 (74)
181 KOG2317|consensus 23.0 1.4E+02 0.003 19.1 3.1 93 5-109 30-123 (138)
182 COG0101 TruA Pseudouridylate s 22.9 2.9E+02 0.0063 19.7 6.5 57 27-84 28-85 (266)
183 COG0129 IlvD Dihydroxyacid deh 22.8 1.4E+02 0.003 23.9 3.7 32 6-37 505-538 (575)
184 PF11142 DUF2917: Protein of u 22.7 1.1E+02 0.0024 16.5 2.4 21 4-24 36-56 (63)
185 PF09756 DDRGK: DDRGK domain; 22.3 67 0.0014 21.6 1.7 21 14-34 145-165 (188)
186 PF01121 CoaE: Dephospho-CoA k 22.0 66 0.0014 21.3 1.6 19 102-120 57-75 (180)
187 PHA02553 6 baseplate wedge sub 21.9 3.9E+02 0.0085 21.7 6.0 60 26-86 316-378 (611)
188 PF10411 DsbC_N: Disulfide bon 20.8 1.2E+02 0.0026 15.8 2.2 16 10-25 32-47 (57)
189 COG4100 Cystathionine beta-lya 20.7 70 0.0015 23.6 1.6 23 97-119 142-164 (416)
190 KOG3050|consensus 20.5 38 0.00082 23.9 0.3 9 6-14 94-102 (299)
191 PF06135 DUF965: Bacterial pro 20.5 43 0.00094 19.2 0.4 14 5-18 40-53 (79)
192 PRK00106 hypothetical protein; 20.3 67 0.0015 25.3 1.6 34 26-64 459-492 (535)
193 cd08062 MPN_RPN7_8 Mpr1p, Pad1 20.2 36 0.00079 24.3 0.1 9 5-13 85-93 (280)
No 1
>KOG1176|consensus
Probab=99.97 E-value=3e-31 Score=198.56 Aligned_cols=116 Identities=42% Similarity=0.763 Sum_probs=111.7
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+++|||+|||+|++|+||+|||. +|.|||++|..||.|.||+|++.+|+.+|+.+.|+|+.+++.
T Consensus 404 ~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~ 483 (537)
T KOG1176|consen 404 FDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS 483 (537)
T ss_pred cccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC
Confidence 567799999999999999999997 999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
....+++.+++++++++|+.|.. ++| ++++|+|++||+.|+.|++++.+.
T Consensus 484 ~lte~di~~~v~k~l~~y~~~~~-V~F--vd~lPKs~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 484 TLTEKDIIEYVRKKLPAYKLPGG-VVF--VDELPKTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred cCCHHHHHHHHHhhCChhhccCe-EEE--eccCCCCCcchHHHHHHHHHHHhc
Confidence 99999999999999999999997 999 999999999999999999998764
No 2
>PRK09188 serine/threonine protein kinase; Provisional
Probab=99.94 E-value=1.8e-25 Score=161.32 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=100.8
Q ss_pred CCCceecCceEEE-cCCCcEEEe------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 4 DDGWLHTGDLAYR-LPDGTHFII------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 4 ~~g~~~TGD~~~~-~~~g~l~~~------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
.+|||+|||+|++ |++|+|+|. +|. ||+++.+||+|.+|+|++++++.+|+.+.|++++.. ..+
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~--~~~ 283 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEGTGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL--PAD 283 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCcCCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC--CCC
Confidence 5899999999998 799999995 788 999999999999999999999999999999998763 456
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
.++++++++..|+. ++|+. +.+ ++.||+|++||++|+.|+.++....
T Consensus 284 ~~el~~~l~~~L~~-kvP~~-v~~--v~~lP~t~~GKi~R~~Lr~~~~~~~ 330 (365)
T PRK09188 284 EKSLRARLAGAKPP-KPPEH-IQP--VAALPRDADGTVRDDILRLIAMNQI 330 (365)
T ss_pred HHHHHHHHHhhchh-cCCcE-EEE--ECCCCCCCCCCccHHHHHHHhhccc
Confidence 78999999999999 99996 999 8999999999999999999875443
No 3
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=3.2e-25 Score=167.21 Aligned_cols=115 Identities=42% Similarity=0.720 Sum_probs=107.2
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC-
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN- 66 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~- 66 (126)
|+.+|||+|||+|++|++|+++|. +|.+||.++.+||.|.++++++++++.+|+.++++++++++
T Consensus 397 f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~ 476 (534)
T COG0318 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGG 476 (534)
T ss_pred hccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCC
Confidence 334699999999999999999997 99999999999999999999999999999999999999876
Q ss_pred -CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 67 -SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 67 -~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
...+.+++..+++..++.++.|+. +++ ++.+|+|++||++|+.|++.+..
T Consensus 477 ~~~~~~~~i~~~~~~~l~~~~~P~~-v~~--v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 477 DAELTAEELRAFLRKRLALYKVPRI-VVF--VDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CCCCCHHHHHHHHHhhhhcccCCeE-EEE--eCCCCCCCchhhhHHHHHHHHHh
Confidence 344789999999999999999995 999 89999999999999999999887
No 4
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.92 E-value=4.5e-24 Score=158.20 Aligned_cols=116 Identities=34% Similarity=0.533 Sum_probs=106.0
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+.+|||+|||+|++|++|++++. +|.+||+++.++|+|.+|++++.+++..|+.+.++++..++ .
T Consensus 321 ~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~ 399 (452)
T PRK07445 321 DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-S 399 (452)
T ss_pred CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-C
Confidence 35799999999999999999997 99999999999999999999999999889999999988655 3
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
.+.+++++++++.|++|++|+. +++ ++.+|+|++||++|++|++++..++.
T Consensus 400 ~~~~~l~~~~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 400 ISLEELKTAIKDQLSPFKQPKH-WIP--VPQLPRNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred CCHHHHHHHHHHhCCcccCCeE-EEE--ecCCCCCCCcccCHHHHHHHHHHhhC
Confidence 5678999999999999999995 888 89999999999999999999887654
No 5
>PLN02654 acetate-CoA ligase
Probab=99.92 E-value=9.1e-24 Score=162.84 Aligned_cols=113 Identities=26% Similarity=0.354 Sum_probs=104.0
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|+++++ +|.+||+++.+||+|.++++++++++..|+.+.++|++.++...+
T Consensus 512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~ 591 (666)
T PLN02654 512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS 591 (666)
T ss_pred CCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCC
Confidence 799999999999999999997 999999999999999999999999999999999999998775443
Q ss_pred H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. ++++.++++.|+++++|+. +++ ++.||+|++||++|+.|++++.+.
T Consensus 592 ~~l~~~l~~~~~~~L~~~~~P~~-i~~--v~~lP~T~sGKi~r~~l~~~~~~~ 641 (666)
T PLN02654 592 EELRKSLILTVRNQIGAFAAPDK-IHW--APGLPKTRSGKIMRRILRKIASRQ 641 (666)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCE-EEE--CCCCCCCCCcCchHHHHHHHHcCC
Confidence 3 4788999999999999995 999 999999999999999999998764
No 6
>KOG1175|consensus
Probab=99.91 E-value=4.2e-24 Score=161.23 Aligned_cols=113 Identities=31% Similarity=0.456 Sum_probs=105.8
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
.|+|.|||.+++|++||+++. ++.|||+++.+||.|.|++|++.+++..|+.+.+|++++++....
T Consensus 474 pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~ 553 (626)
T KOG1175|consen 474 PGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDP 553 (626)
T ss_pred CceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCCh
Confidence 799999999999999999998 999999999999999999999999999999999999999984443
Q ss_pred H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. ++|+++++..+.+++.|+. +++ +++||+|.+||+.|+.|+++..++
T Consensus 554 ~~L~kel~~~VR~~igp~a~P~~-I~~--v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 554 EQLTKELVKHVRSVIGPYAVPRL-IVF--VPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred HHHHHHHHHHHHhhcCcccccce-eEe--cCCCCccccchhHHHHHHHHhccC
Confidence 3 6888899999999999996 999 999999999999999999999876
No 7
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.91 E-value=9.9e-24 Score=162.28 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=103.7
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|+|+++ +|.+||+++.+||+|.+|++++++++..++.+.++|++.++...+
T Consensus 498 ~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~ 577 (652)
T TIGR01217 498 PGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLD 577 (652)
T ss_pred CCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCC
Confidence 689999999999999999997 899999999999999999999999999999999999998765444
Q ss_pred H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. +++++++++.|+++++|+. +.+ ++.||+|++||++|+.|++.+.+.
T Consensus 578 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~r~~Lr~~~~~~ 627 (652)
T TIGR01217 578 DALLDRIKRTIRAGLSPRHVPDE-IIE--VPGIPHTLTGKRVEVAVKRVLQGT 627 (652)
T ss_pred HHHHHHHHHHHHhhCCCCcCCCE-EEE--CCCCCCCCCccChHHHHHHHHcCC
Confidence 3 5899999999999999996 999 999999999999999999998654
No 8
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.91 E-value=6.9e-24 Score=158.68 Aligned_cols=110 Identities=33% Similarity=0.537 Sum_probs=101.0
Q ss_pred ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC--
Q psy4975 7 WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT-- 70 (126)
Q Consensus 7 ~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 70 (126)
||.|||.+++|+||+|+|. ++.|||++|.+||.|.+|++++.+++..|+.+.++|+++++...+
T Consensus 397 ~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L 476 (528)
T COG0365 397 WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNEL 476 (528)
T ss_pred eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHH
Confidence 9999999999999999997 899999999999999999999999999999999999999885433
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.++|++++++.+.+++.|+. +.+ ++.||+|.|||+.|+.|++.+.+
T Consensus 477 ~~ei~~~vr~~~~~~~~p~~-i~f--v~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 477 AEEIRRHVARNIGPHAIPRK-IRF--VDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred HHHHHHHHHhccCcccCCce-EEE--ecCCCCCCcccHHHHHHHHHHhh
Confidence 35677778777888999996 999 99999999999999999999873
No 9
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.91 E-value=1.3e-23 Score=159.03 Aligned_cols=120 Identities=26% Similarity=0.484 Sum_probs=104.2
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++.+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..++.+.++++++++.
T Consensus 410 ~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~ 489 (563)
T PLN02860 410 LSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGW 489 (563)
T ss_pred ccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCcc
Confidence 346899999999999999999997 999999999999999999999999999899999999987652
Q ss_pred --------------CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 68 --------------SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 68 --------------~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
....+.+..++++ .|++|++|+. ++++ .+.+|+|++||++|++|++++.++.+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~-~~~~-~~~lP~t~~GKi~r~~L~~~~~~~~~~ 558 (563)
T PLN02860 490 IWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKL-FVQW-RKPFPLTTTGKIRRDEVRREVLSHLQS 558 (563)
T ss_pred ccccccchhhcccccccHHHHHHHHhhCcccccccceE-EEEE-ecCCCCCcccchhHHHHHHHHHHHHhc
Confidence 2445789999987 5999999996 5440 477999999999999999999876654
No 10
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.91 E-value=2e-23 Score=150.22 Aligned_cols=114 Identities=29% Similarity=0.466 Sum_probs=104.0
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
+..+|||+|||+|++ ++|++++. +|.+||+.+.++|+|.+|++++.+++..++.+.++++...+.
T Consensus 230 ~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~ 308 (358)
T PRK07824 230 FAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP 308 (358)
T ss_pred ccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC
Confidence 345789999999999 78999887 999999999999999999999999988888999998877666
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
....+++++++++.++.+++|.. +.+ ++++|+|++||++|++|++++..
T Consensus 309 ~~~~~~i~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 309 APTLEALRAHVARTLDRTAAPRE-LHV--VDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred CcCHHHHHHHHHhhCccccCCCE-EEE--ecCCCCCCCccccHHHHHHHhhc
Confidence 67789999999999999999995 999 89999999999999999998864
No 11
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.91 E-value=2.2e-23 Score=160.28 Aligned_cols=113 Identities=21% Similarity=0.395 Sum_probs=101.1
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC---
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS--- 67 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 67 (126)
+|||+|||+|++|++|++++. +|.+||+++.+||.|.+|++++++++..++.+.++|+++++.
T Consensus 491 ~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~ 570 (647)
T PTZ00237 491 PGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQ 570 (647)
T ss_pred CCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCcccc
Confidence 799999999999999999997 999999999999999999999999999999999999987432
Q ss_pred CCCH----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTA----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+. ++++++++..|+++++|+. +++ ++++|+|++||++|+.|++++.+.
T Consensus 571 ~~~~~~l~~~i~~~~~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~R~~Lr~~~~~~ 624 (647)
T PTZ00237 571 SIDLNKLKNEINNIITQDIESLAVLRK-III--VNQLPKTKTGKIPRQIISKFLNDS 624 (647)
T ss_pred CCCHHHHHHHHHHHHHhhcCccccCcE-EEE--cCCCCCCCCccEeHHHHHHHHcCC
Confidence 2232 4667888889999999995 999 999999999999999999998654
No 12
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.91 E-value=3.5e-23 Score=159.12 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=103.6
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|+|+|. +|.+||+++.+||+|.+|++++.+++..++.+.+++++.++...+
T Consensus 497 ~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~ 576 (655)
T PRK03584 497 PGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLD 576 (655)
T ss_pred CCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCc
Confidence 579999999999999999997 899999999999999999999999988899999999998765444
Q ss_pred H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
. +++++++++.|+++++|.. +++ ++.+|+|++||++|+.|++++.+..
T Consensus 577 ~~~~~~l~~~~~~~L~~~~~P~~-i~~--v~~lP~t~sGKi~r~~lr~~~~~~~ 627 (655)
T PRK03584 577 DALRARIRTTIRTNLSPRHVPDK-IIA--VPDIPRTLSGKKVELPVKKLLHGRP 627 (655)
T ss_pred HHHHHHHHHHHHhhCCCCcCCCE-EEE--CCCCCCCCCccchHHHHHHHHcCCC
Confidence 3 6899999999999999996 999 9999999999999999999987643
No 13
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.91 E-value=2.1e-23 Score=159.80 Aligned_cols=115 Identities=25% Similarity=0.402 Sum_probs=103.4
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
++|||+|||+|++|++|+|++. +|.+||+++.++|+|.+|++++++++..++.+++++++.++...
T Consensus 470 ~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~ 549 (628)
T TIGR02316 470 KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA 549 (628)
T ss_pred CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc
Confidence 4689999999999999999997 99999999999999999999999999999999999988765321
Q ss_pred --------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 70 --------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 70 --------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
..+++++++++.|+++++|+. +++ ++.+|+|++||++|+.|++++.+..
T Consensus 550 ~~~~~~~~~~~~i~~~~~~~L~~~~~P~~-v~~--v~~lP~t~sGKi~r~~L~~~~~~~~ 606 (628)
T TIGR02316 550 GDAHDPHAVETGMMDCVVRQLGAVARPAR-VYF--VAALPKTRSGKLLRRSIQALAEGRD 606 (628)
T ss_pred ccccchHHHHHHHHHHHHHhcCCCcCCCE-EEE--cCCCCCCCchHHHHHHHHHHHcCCC
Confidence 246899999999999999996 999 9999999999999999999887643
No 14
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.90 E-value=4.8e-23 Score=157.53 Aligned_cols=114 Identities=31% Similarity=0.447 Sum_probs=104.6
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|++|++|++++. +|.+||+++.++|+|.+|++++.+++..|+.+.+++++.++...
T Consensus 473 ~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~ 552 (625)
T TIGR02188 473 FPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEP 552 (625)
T ss_pred CCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCC
Confidence 3789999999999999999997 99999999999999999999999999999999999999877544
Q ss_pred C---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 T---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 ~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. .+++++++++.|+++++|+. +++ ++.+|+|++||++|+.|++++.+.
T Consensus 553 ~~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 553 DDELRKELRKHVRKEIGPIAKPDK-IRF--VPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred CHHHHHHHHHHHHhhcCCCccCcE-EEE--CCCCCCCCCccchHHHHHHHHcCC
Confidence 3 36899999999999999995 999 999999999999999999998765
No 15
>PRK07529 AMP-binding domain protein; Validated
Probab=99.90 E-value=3.7e-23 Score=158.57 Aligned_cols=115 Identities=34% Similarity=0.560 Sum_probs=105.9
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
.++|||+|||+|+++++|++++. +|.+||+.+.+||+|.+|++++.+++..|+.+++++++.++..
T Consensus 442 ~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~ 521 (632)
T PRK07529 442 LEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS 521 (632)
T ss_pred cCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC
Confidence 36899999999999999999997 8999999999999999999999999999999999999988877
Q ss_pred CCHHHHHHHHHhhcC-CCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 69 VTAEEVKQFVEDQVN-PSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~-~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
.+.++++++++++++ .+++|+. +++ ++.||+|++||++|+.|++++..+
T Consensus 522 ~~~~~l~~~~~~~l~~~~~~P~~-i~~--v~~lP~t~~GKi~r~~Lr~~~~~~ 571 (632)
T PRK07529 522 ATEAELLAFARDHIAERAAVPKH-VRI--LDALPKTAVGKIFKPALRRDAIRR 571 (632)
T ss_pred CCHHHHHHHHHHhcchhccCCcE-EEE--ecCCCCCCCCcccHHHHHHHHHHH
Confidence 788999999999986 5799995 999 899999999999999999987653
No 16
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.90 E-value=3.8e-23 Score=154.61 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=95.6
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhc-CCCcceEEEEeeecCCCC-CeeEEEE---EeCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVEDVAVIGIPHDVFG-ELPAAVV---VPKP 65 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~-~~~v~~~~~~~~~~~~~~-~~~~~~v---~~~~ 65 (126)
.+||+|||+|++|++|+|+|. +|.+||+++.+ ||+|.+|++++++++.+| +.+.+++ ++++
T Consensus 356 ~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~ 435 (499)
T PLN03051 356 MPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKK 435 (499)
T ss_pred cceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecc
Confidence 458999999999999999997 99999999986 999999999999999888 6788888 6665
Q ss_pred CC-CCCHHHHHHHH----HhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 66 NS-SVTAEEVKQFV----EDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 66 ~~-~~~~~~~~~~l----~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
+. ....+++++++ ++.|++++.|.. +.+ ++.||+|++||++|++|++.+..+..
T Consensus 436 ~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 436 GFDQARPEALQKKFQEAIQTNLNPLFKVSR-VKI--VPELPRNASNKLLRRVLRDQLKKELS 494 (499)
T ss_pred cccccchHHHHHHHHHHHHhhcCCccCCce-EEE--cCCCCCCCCccHHHHHHHHHHHHhhc
Confidence 53 34455666555 455777777874 888 89999999999999999998776543
No 17
>PLN02574 4-coumarate--CoA ligase-like
Probab=99.90 E-value=3.7e-23 Score=156.46 Aligned_cols=116 Identities=37% Similarity=0.716 Sum_probs=106.3
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|+++++|++++. ++.+||..+.+||+|.++++++++++..++.+.++++..++.
T Consensus 426 ~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~ 505 (560)
T PLN02574 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS 505 (560)
T ss_pred ccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC
Confidence 456899999999999999999997 999999999999999999999999988888899999887766
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+.+++.+++++.|++++.|+. +.+ ++++|+|++||++|+.|++.+.+.
T Consensus 506 ~~~~~~l~~~~~~~l~~~~~p~~-v~~--v~~iP~t~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 506 TLSQEAVINYVAKQVAPYKKVRK-VVF--VQSIPKSPAGKILRRELKRSLTNS 555 (560)
T ss_pred CCCHHHHHHHHHHhccCcccCcE-EEE--eeccCCCCcchhhHHHHHHHHhhc
Confidence 67778999999999999999995 888 899999999999999999988653
No 18
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.90 E-value=3.3e-23 Score=165.41 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=101.0
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
++|||+|||+|++|+||+|+|. +|.+||++|.+||+|.+|+|++++++. ++.++++|+++++...
T Consensus 834 ~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~ 912 (994)
T PRK07868 834 ADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAI 912 (994)
T ss_pred CCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcC
Confidence 5899999999999999999997 899999999999999999999998875 5778889988877667
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
+.+++++++++ +++|++|+. +++ ++.||+|++||++|++|++....
T Consensus 913 ~~~~L~~~l~~-l~~y~vP~~-i~~--v~~lP~T~sGKi~r~~L~~~~lp 958 (994)
T PRK07868 913 TAADLTEALAS-LPVGLGPDI-VHV--VPEIPLSATYRPTVSALRAAGIP 958 (994)
T ss_pred CHHHHHHHHHh-CCCCcCCeE-EEE--eCCCCCCccccEehHHHHhcCCC
Confidence 78899999986 999999995 999 99999999999999999887554
No 19
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.90 E-value=3.4e-23 Score=156.09 Aligned_cols=110 Identities=35% Similarity=0.614 Sum_probs=102.4
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|++++. +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++...
T Consensus 425 ~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~ 504 (549)
T PRK07788 425 IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAAL 504 (549)
T ss_pred cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCC
Confidence 3689999999999999999996 89999999999999999999999999989999999998877677
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
+.++++++++++|++|++|.. +++ ++++|+|++||++|++|+++
T Consensus 505 ~~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 505 DEDAIKDYVRDNLARYKVPRD-VVF--LDELPRNPTGKVLKRELREM 548 (549)
T ss_pred CHHHHHHHHHHhhhcCCCCcE-EEE--eCCCCCCCCcCEeHHHhhcc
Confidence 889999999999999999996 888 89999999999999999764
No 20
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.90 E-value=9.5e-23 Score=156.24 Aligned_cols=114 Identities=30% Similarity=0.408 Sum_probs=104.0
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..|+.+.+++++.++...
T Consensus 481 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~ 560 (637)
T PRK00174 481 FKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEP 560 (637)
T ss_pred CCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCC
Confidence 4799999999999999999997 99999999999999999999999999999999999998876543
Q ss_pred C---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 T---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 ~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
+ .+++++++++.|+.+++|.. +++ ++.+|+|++||++|+.|+++..+.
T Consensus 561 ~~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 561 SDELRKELRNWVRKEIGPIAKPDV-IQF--APGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred CHHHHHHHHHHHHhhcCCccCCCE-EEE--cCCCCCCCCcchHHHHHHHHHcCC
Confidence 3 46899999999999999995 999 899999999999999999987655
No 21
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.90 E-value=1.2e-22 Score=151.07 Aligned_cols=116 Identities=28% Similarity=0.593 Sum_probs=105.4
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++++|||+|||+|+++++|++++. +|.+||+.+.++++|.++++++++++..++...+++++.++.
T Consensus 357 ~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~ 436 (488)
T PRK09088 357 FTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA 436 (488)
T ss_pred hcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC
Confidence 346899999999999999999986 899999999999999999999999887788888888887766
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+..++.+++++.++++++|.. +.+ ++.+|+|++||++|++|++++.+.
T Consensus 437 ~~~~~~l~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 437 PLDLERIRSHLSTRLAKYKVPKH-LRL--VDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred CCCHHHHHHHHHhhCcCCCCCCE-EEE--cccCCCCCCCceeHHHHHHHHHhc
Confidence 66788999999999999999995 999 899999999999999999988753
No 22
>KOG1177|consensus
Probab=99.90 E-value=6.8e-23 Score=149.14 Aligned_cols=117 Identities=29% Similarity=0.461 Sum_probs=109.1
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++.|.||+|||++.||++|++.++ +|.+||+.|.+||.|.++.|++++|...|+.++|++.+..+.
T Consensus 457 i~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~ 536 (596)
T KOG1177|consen 457 IGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGA 536 (596)
T ss_pred cccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccc
Confidence 567999999999999999999997 999999999999999999999999999999999999998775
Q ss_pred C--CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 68 S--VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 68 ~--~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
. ...+.|+.+++.++..|++|+ ++++ ++++|+|.+|||++-+++++..+..
T Consensus 537 e~~~t~E~lKa~Ck~klaHFKiPk-y~vf--~~~FPlT~tGKIqKFeir~~~k~~l 589 (596)
T KOG1177|consen 537 EGKTTAETLKAMCKGKLAHFKIPK-YFVF--VDEFPLTTTGKIQKFEIREMSKGHL 589 (596)
T ss_pred cccccHHHHHHHHhcccccccCCc-EEEE--eccCcccccccchhHHHHHHHHhhc
Confidence 5 477999999999999999999 5999 9999999999999999999988544
No 23
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.90 E-value=1.2e-22 Score=153.70 Aligned_cols=116 Identities=35% Similarity=0.557 Sum_probs=105.8
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|..+|||+|||+|+++++|++++. +|.+||+.+.++++|.++++++++++..++.+.+++++.++.
T Consensus 429 ~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~ 508 (562)
T PRK05677 429 LDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE 508 (562)
T ss_pred cCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC
Confidence 456899999999999999999986 899999999999999999999999988888888888877666
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+.+++..++++.+++|++|.. +++ ++.+|+|++||++|++|++++..+
T Consensus 509 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~iP~t~sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 509 TLTKEQVMEHMRANLTGYKVPKA-VEF--RDELPTTNVGKILRRELRDEELKK 558 (562)
T ss_pred CCCHHHHHHHHHHhhhhccCCcE-EEE--eccCCCCCcccccHHHHHHHHHHh
Confidence 67788999999999999999995 999 999999999999999999877654
No 24
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.89 E-value=1.1e-22 Score=152.83 Aligned_cols=113 Identities=34% Similarity=0.547 Sum_probs=104.5
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|++++. +|.+||+++.++|+|.+|++++.++...++.+.++++..+....+
T Consensus 407 ~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~ 486 (534)
T PRK05852 407 DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT 486 (534)
T ss_pred CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCC
Confidence 689999999999999999997 899999999999999999999999988888899999887666677
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
.+++.++++.+|+++++|.. +++ ++.+|+|++||++|++|++.+..+
T Consensus 487 ~~~i~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~GKi~r~~L~~~~~~~ 533 (534)
T PRK05852 487 AEELVQFCRERLAAFEIPAS-FQE--ASGLPHTAKGSLDRRAVAEQFGHS 533 (534)
T ss_pred HHHHHHHHHHhcccccCCeE-EEE--hhhcCCCCCccccHHHHHHHhccc
Confidence 88999999999999999995 999 999999999999999999988654
No 25
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.89 E-value=1.4e-22 Score=154.25 Aligned_cols=114 Identities=20% Similarity=0.224 Sum_probs=100.2
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCC-CCeeEEEEEeCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVF-GELPAAVVVPKPNSS 68 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 68 (126)
+++||+|||+|+++++|++++. +|.+||+.+.++|+|.+|++++++++.. +....++++..++..
T Consensus 437 ~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~ 516 (600)
T PRK08279 437 GDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE 516 (600)
T ss_pred CCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc
Confidence 4789999999999999999997 8999999999999999999999987653 445566666665556
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
.+.+++.++++++|+.|++|.. +++ ++++|+|++||++|..|++++...
T Consensus 517 ~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 517 FDLAALAAHLYERLPAYAVPLF-VRL--VPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred CCHHHHHHHHHhhCccccCCeE-EEe--ecCCCCCcchhhhHHHHhhcCCCc
Confidence 6788999999999999999995 999 899999999999999999887765
No 26
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.89 E-value=2.9e-22 Score=153.37 Aligned_cols=115 Identities=30% Similarity=0.475 Sum_probs=102.7
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
++|||+|||+|++|++|++++. +|.+||+++.++|+|.+|++++.+++..++.+.++++++.+...
T Consensus 471 ~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~ 550 (629)
T PRK10524 471 GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL 550 (629)
T ss_pred CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc
Confidence 4689999999999999999997 89999999999999999999999999889999999998765322
Q ss_pred --------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 70 --------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 70 --------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
..+++++++++.|+++++|.. +++ ++.+|+|++||++|+.|++++.+..
T Consensus 551 ~~~~~~~~~~~~i~~~~~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~R~~L~~~~~~~~ 607 (629)
T PRK10524 551 ADREARLALEKEIMALVDSQLGAVARPAR-VWF--VSALPKTRSGKLLRRAIQAIAEGRD 607 (629)
T ss_pred ccccchHHHHHHHHHHHHhhcCCCcCCCE-EEE--cCCCCCCCCcchHHHHHHHHHcCCC
Confidence 236788999999999999996 999 8999999999999999999877543
No 27
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.89 E-value=3.9e-22 Score=148.22 Aligned_cols=113 Identities=31% Similarity=0.512 Sum_probs=104.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+++++++|++++. +|.+||+.+.++|+|.++++++.+++..++.+.++++++++...
T Consensus 369 ~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~ 448 (496)
T PRK06839 369 QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVL 448 (496)
T ss_pred cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC
Confidence 3789999999999999999986 89999999999999999999999999989999999999877777
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..++++++++..++++++|.. +++ ++.+|+|++||++|++|+++...
T Consensus 449 ~~~~l~~~~~~~l~~~~~P~~-~~~--v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 449 IEKDVIEHCRLFLAKYKIPKE-IVF--LKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred CHHHHHHHHHhhCcCCCCCcE-EEE--eccCCCCccccccHHHHHHHhhc
Confidence 788999999999999999996 888 89999999999999999987754
No 28
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.89 E-value=4.1e-22 Score=150.24 Aligned_cols=117 Identities=43% Similarity=0.752 Sum_probs=107.1
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++.+|||+|||+|+++++|++++. +|.+||+++.+++.|.++++++++++..++.+.+++++.++.
T Consensus 413 ~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~ 492 (546)
T PLN02330 413 IDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA 492 (546)
T ss_pred ccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC
Confidence 457899999999999999999997 899999999999999999999999988888899999887766
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
..+.++++++++..+++++.|+. +++ ++.+|+|++||++|++|++++....
T Consensus 493 ~~~~~~l~~~~~~~l~~~~~p~~-~~~--v~~iP~t~~GK~~r~~L~~~~~~~~ 543 (546)
T PLN02330 493 KESEEDILNFVAANVAHYKKVRV-VQF--VDSIPKSLSGKIMRRLLKEKMLSIN 543 (546)
T ss_pred CCCHHHHHHHHHHhcccccCceE-EEE--eccCCCCCCcceeHHHHHHHHHhhh
Confidence 66778999999999999999995 888 8999999999999999999987653
No 29
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.89 E-value=2.7e-22 Score=152.40 Aligned_cols=114 Identities=26% Similarity=0.474 Sum_probs=102.6
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC-
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV- 69 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 69 (126)
+|||+|||+|++|++|++++. +|.+||+.+.++|.|.++++++++++..++.+.+++++.++...
T Consensus 419 ~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 498 (579)
T PLN03102 419 HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK 498 (579)
T ss_pred cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc
Confidence 689999999999999999987 89999999999999999999999999888899999988765332
Q ss_pred ---------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 70 ---------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 70 ---------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
...+++++++..|++|++|.. +++ ++.+|+|++||++|++|++++....
T Consensus 499 ~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~-i~~--~~~~P~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 499 EDRVDKLVTRERDLIEYCRENLPHFMCPRK-VVF--LQELPKNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred ccccccccccHHHHHHHHHhhcccccCCeE-EEE--cccCCCCCcccccHHHHHHHHHHhh
Confidence 356899999999999999996 999 8999999999999999999886643
No 30
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.89 E-value=7.7e-22 Score=148.64 Aligned_cols=118 Identities=33% Similarity=0.528 Sum_probs=107.4
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+.+|||+|||+|+++++|++++. +|.+||+.+..+++|.++++++.++...++.+.+++++.++..
T Consensus 425 ~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 504 (558)
T PRK12583 425 DEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA 504 (558)
T ss_pred CCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC
Confidence 46899999999999999999996 8999999999999999999999999888888999998877666
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
.+..+++.+++++|+++++|.. +++ ++.+|+|++||++|+.|++++..+.+.
T Consensus 505 ~~~~~i~~~~~~~L~~~~~P~~-i~~--v~~lP~t~sGK~~r~~L~~~~~~~~~~ 556 (558)
T PRK12583 505 ASEEELREFCKARIAHFKVPRY-FRF--VDEFPMTVTGKVQKFRMREISIEELAL 556 (558)
T ss_pred CCHHHHHHHHHhhcccCcCCcE-EEE--eccCCCCCCCCccHHHHHHHHHhhcCC
Confidence 6788999999999999999996 888 899999999999999999998776543
No 31
>PLN02246 4-coumarate--CoA ligase
Probab=99.89 E-value=4e-22 Score=149.96 Aligned_cols=115 Identities=45% Similarity=0.758 Sum_probs=104.5
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++++|||+|||+|+++++|++++. +|.+||+.+.++|+|.++++++.++...++.+.++++..++.
T Consensus 408 ~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 487 (537)
T PLN02246 408 IDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGS 487 (537)
T ss_pred ccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCC
Confidence 346899999999999999999996 899999999999999999999998888888889999887666
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
....+++++++++.+++++.|.. +.+ ++.+|+|++||++|+.|++++.+
T Consensus 488 ~~~~~~l~~~l~~~l~~~~~p~~-i~~--~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 488 EITEDEIKQFVAKQVVFYKRIHK-VFF--VDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred CCCHHHHHHHHHhhCcCccccce-EEE--eccCCCCCcchhhHHHHHHHHhc
Confidence 66778999999999999999996 888 89999999999999999998753
No 32
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.88 E-value=5.2e-22 Score=146.79 Aligned_cols=114 Identities=25% Similarity=0.413 Sum_probs=103.5
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
.++|||+|||+|+++ +|++++. +|.+||+.+.++|+|.+|++++.+++..++.+.+++++.. .
T Consensus 329 ~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~ 405 (458)
T PRK09029 329 NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--E 405 (458)
T ss_pred cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--c
Confidence 457999999999999 9999997 8999999999999999999999999998888999888763 3
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
...+++++++++++++|++|.. ++. ++.+|+|++||++|+.|++++.+...
T Consensus 406 ~~~~~l~~~~~~~l~~~~~P~~-~~~--~~~~p~t~~gKi~r~~L~~~~~~~~~ 456 (458)
T PRK09029 406 AAVVNLAEWLQDKLARFQQPVA-YYL--LPPELKNGGIKISRQALKEWVAQQLG 456 (458)
T ss_pred cCHHHHHHHHHhhchhccCCeE-EEE--ecccccCcCCCcCHHHHHHHHHhccC
Confidence 5678999999999999999996 888 89999999999999999999987554
No 33
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.88 E-value=8.1e-22 Score=147.88 Aligned_cols=113 Identities=34% Similarity=0.587 Sum_probs=104.3
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+++++++|++++. +|.+||..+.+++.|.+|++++.+++..++...++++..++...+
T Consensus 393 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (528)
T PRK07470 393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVD 472 (528)
T ss_pred CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCC
Confidence 789999999999999999986 899999999999999999999999988888888898887766678
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
.+++++++++.|+++++|.. +++ ++.+|+|++||++|+.|++++.++
T Consensus 473 ~~~~~~~l~~~l~~~~~P~~-~~~--~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 473 EAELLAWLDGKVARYKLPKR-FFF--WDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred HHHHHHHHHHhhhcCCCCcE-EEE--eccCCCCCcccccHHHHHHHHHhc
Confidence 88999999999999999996 888 899999999999999999988764
No 34
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.88 E-value=7.4e-22 Score=148.93 Aligned_cols=112 Identities=27% Similarity=0.363 Sum_probs=103.3
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|++++. +|.+||+++.++++|.+|++++++++..+..+.+++++..+...
T Consensus 398 ~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~ 477 (542)
T PRK06155 398 RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL 477 (542)
T ss_pred cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC
Confidence 3799999999999999999986 99999999999999999999999998888888888888877777
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
+..++++++++.++.+++|.. +.+ ++.+|+|++||++|++|++++-
T Consensus 478 ~~~~~~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 478 EPVALVRHCEPRLAYFAVPRY-VEF--VAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred CHHHHHHHHHhhCcCccCCcE-EEE--eccCCCCcccceeHHHHHhhcc
Confidence 889999999999999999995 888 8999999999999999998764
No 35
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.88 E-value=5.4e-22 Score=153.70 Aligned_cols=113 Identities=21% Similarity=0.315 Sum_probs=100.0
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
..+|||+|||+|+++++|++++. +|.+||+.+.++++|.+++++++++...++.+.+++++..+..
T Consensus 362 ~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~ 441 (705)
T PRK06060 362 ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT 441 (705)
T ss_pred cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC
Confidence 35799999999999999999987 9999999999999999999999998888888899988765533
Q ss_pred CC---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 69 VT---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 69 ~~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
.+ .+++.+++++.|+.|++|.. +++ ++.+|+|++||++|++|++.+.
T Consensus 442 ~~~~~~~~i~~~l~~~L~~~~~P~~-i~~--v~~iP~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 442 IDGSVMRDLHRGLLNRLSAFKVPHR-FAV--VDRLPRTPNGKLVRGALRKQSP 491 (705)
T ss_pred cChHHHHHHHHHHHHhCCCCcCCcE-EEE--eecCCCCcchhhHHHHHHhhcc
Confidence 33 25788899999999999996 888 8999999999999999998653
No 36
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=2.6e-22 Score=143.72 Aligned_cols=117 Identities=29% Similarity=0.535 Sum_probs=108.8
Q ss_pred CCCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975 1 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 66 (126)
Q Consensus 1 ~~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 66 (126)
+||.+|+|+|||+++++++|++.+. ..+|||+.|..||.|.+|+++..+|...|++.++++++++.
T Consensus 409 aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~ 488 (542)
T COG1021 409 AFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP 488 (542)
T ss_pred ccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC
Confidence 5899999999999999999999997 89999999999999999999999999999999999998755
Q ss_pred CCCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 67 SSVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 67 ~~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
..+..++++++.+. ++.|++|.+ +.+ ++.+|.|+-|||+++.|++++..+.
T Consensus 489 -~~~~~qlr~~L~~~GlAa~K~PDr-ie~--v~~~P~T~VGKIdKk~Lr~~l~~~~ 540 (542)
T COG1021 489 -PLRAAQLRRFLRERGLAAFKLPDR-IEF--VDSLPLTAVGKIDKKALRRRLASRL 540 (542)
T ss_pred -CCCHHHHHHHHHHcchhhhcCCcc-eee--cccCCCcccccccHHHHHHHhhhhc
Confidence 47789999999998 899999997 999 9999999999999999999887653
No 37
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.88 E-value=9.8e-22 Score=149.06 Aligned_cols=115 Identities=34% Similarity=0.452 Sum_probs=103.9
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
..+|||+|||+++++++|++++. ++.+||+.+.++|.|.+|++++.++...|+...+++++.++..
T Consensus 427 ~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~ 506 (576)
T PRK05620 427 TADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE 506 (576)
T ss_pred ccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC
Confidence 45799999999999999999997 8999999999999999999999999988888888888776532
Q ss_pred ---CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 69 ---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 69 ---~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
...++++.++++.|+.+++|+. +++ ++.+|+|++||++|+.|++++...
T Consensus 507 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~~P~t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 507 PTRETAERLRDQLRDRLPNWMLPEY-WTF--VDEIDKTSVGKFDKKDLRQHLADG 558 (576)
T ss_pred cccccHHHHHHHHHhhCccccCCeE-EEE--eccCCCCCcccCcHHHHHHHHhcC
Confidence 3468999999999999999996 999 899999999999999999998853
No 38
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.88 E-value=9.8e-22 Score=147.97 Aligned_cols=112 Identities=30% Similarity=0.474 Sum_probs=103.3
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++...+
T Consensus 380 ~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~ 459 (529)
T PRK07867 380 GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD 459 (529)
T ss_pred CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC
Confidence 689999999999999999986 899999999999999999999999999999999999988776778
Q ss_pred HHHHHHHHHhh--cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 71 AEEVKQFVEDQ--VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 71 ~~~~~~~l~~~--l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..+++++++.. |++++.|.. +.+ ++++|+|++||++|+.|+++...
T Consensus 460 ~~~l~~~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 460 PDAFAEFLAAQPDLGPKQWPSY-VRV--CAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred HHHHHHHHHhhccCCcccCCeE-EEE--eeccCCCCCcceeHHHHHHhcCC
Confidence 88999999875 999999995 888 89999999999999999998754
No 39
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.88 E-value=1.3e-21 Score=147.16 Aligned_cols=115 Identities=30% Similarity=0.483 Sum_probs=102.6
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC--
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-- 67 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 67 (126)
+++||+|||+|+++++|++++. +|.+||+++.++++|.++++++.++...++.+.++++++.+.
T Consensus 414 ~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~ 493 (546)
T PRK08314 414 GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG 493 (546)
T ss_pred CCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC
Confidence 4579999999999999999986 899999999999999999999999988888999999887653
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
....+++++++++.|+++++|.. +++ ++.+|+|++||++|+.|++...+..
T Consensus 494 ~~~~~~l~~~~~~~l~~~~~P~~-~~~--v~~iP~t~~GKv~r~~L~~~~~~~~ 544 (546)
T PRK08314 494 KTTEEEIIAWAREHMAAYKYPRI-VEF--VDSLPKSGSGKILWRQLQEQEKARA 544 (546)
T ss_pred CCCHHHHHHHHHHhcccCCCCcE-EEE--ecCCCCCCccceeHHHHHHHHhhhc
Confidence 23458999999999999999996 999 8999999999999999988766543
No 40
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.88 E-value=1.4e-21 Score=146.16 Aligned_cols=113 Identities=25% Similarity=0.373 Sum_probs=104.0
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
+++||+|||+++++++|++++. +|.+||+.+.++++|.++++++.+++..++.+.+++++.++...
T Consensus 406 ~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 485 (533)
T PRK07798 406 GVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP 485 (533)
T ss_pred CCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCC
Confidence 4579999999999999999997 89999999999999999999999988888889999988877667
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
+.+++.+++++.|+++++|.. +++ ++++|+|++||++|+.|++++.+
T Consensus 486 ~~~~l~~~l~~~l~~~~~P~~-i~~--~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 486 DLAELRAHCRSSLAGYKVPRA-IWF--VDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred CHHHHHHHHhhhcccCCCCeE-EEE--cccCCCCCcchhhHHHHhhhhcc
Confidence 889999999999999999995 888 89999999999999999998764
No 41
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.88 E-value=1.6e-21 Score=146.96 Aligned_cols=114 Identities=33% Similarity=0.477 Sum_probs=105.8
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+.+|||+|||+++++++|++++. ++.+||+.+.++|+|.+|++++.+++..++...+++++.++..
T Consensus 407 ~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 486 (542)
T PRK06018 407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET 486 (542)
T ss_pred cCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC
Confidence 46899999999999999999986 9999999999999999999999999888888999998887777
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.+.+++.++++..++.+++|.. +.+ ++.+|+|++||++|++|++++..
T Consensus 487 ~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 487 ATREEILKYMDGKIAKWWMPDD-VAF--VDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred CCHHHHHHHHHhhCccccCCcE-EEE--eccCCCCCcchhhHHHHHHHHhc
Confidence 7788999999999999999996 888 89999999999999999998876
No 42
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.88 E-value=1.6e-21 Score=146.81 Aligned_cols=115 Identities=29% Similarity=0.466 Sum_probs=104.0
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|++|++|++++. +|.+||..+.++++|.++++++.++...++..++++++.+.
T Consensus 405 ~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~- 483 (536)
T PRK10946 405 FDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP- 483 (536)
T ss_pred cccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC-
Confidence 457899999999999999999997 89999999999999999999999998888888998887654
Q ss_pred CCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 68 SVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 68 ~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
.+..++.++++.. +++|+.|.. +.+ ++++|+|++||++|++|++++....
T Consensus 484 -~~~~~l~~~~~~~~l~~~~~P~~-~~~--~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 484 -LKAVQLRRFLREQGIAEFKLPDR-VEC--VDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred -CCHHHHHHHHHhCCccccccCcE-EEE--eccCCCCCCCcccHHHHHHHHHhhc
Confidence 6778999999886 999999996 898 8999999999999999999877643
No 43
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.88 E-value=1.7e-21 Score=144.99 Aligned_cols=111 Identities=29% Similarity=0.502 Sum_probs=102.9
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
++||+|||+|+++++|++++. +|.+||+.+.++++|.++++++..++..++.+.+++++.......
T Consensus 372 ~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 451 (497)
T PRK06145 372 GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT 451 (497)
T ss_pred CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC
Confidence 589999999999999999996 899999999999999999999999988888899999987666667
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
..++.+++++.|++++.|.. +++ ++++|+|++||++|+.|++++.
T Consensus 452 ~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 452 LEALDRHCRQRLASFKVPRQ-LKV--RDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred HHHHHHHHHHhhhcCCCCCE-EEE--eccCCCCCcccccHHHHHHHhc
Confidence 88999999999999999996 999 9999999999999999999775
No 44
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.87 E-value=1.2e-21 Score=147.56 Aligned_cols=112 Identities=36% Similarity=0.501 Sum_probs=102.9
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+++++++|+|++. +|.+||+.+..+|.|.+++++++++...++.+.++++..++...+
T Consensus 408 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 487 (539)
T PRK07008 408 DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVT 487 (539)
T ss_pred CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccC
Confidence 689999999999999999986 899999999999999999999999988888888888877666667
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.+++.++++++++++++|.. +++ ++.+|+|++||++|++|++++..
T Consensus 488 ~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 488 REELLAFYEGKVAKWWIPDD-VVF--VDAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred HHHHHHHHHhhcccccCCeE-EEE--ecCCCCCCccceeHHHHHHHHHh
Confidence 88999999999999999995 888 89999999999999999998765
No 45
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.87 E-value=1.2e-21 Score=145.63 Aligned_cols=112 Identities=31% Similarity=0.576 Sum_probs=101.2
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
..+|||+|||++++|++|++++. +|.+||+++.++|+|.+|++++.+++..++.+.+++.. .
T Consensus 358 ~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~ 433 (487)
T PRK07638 358 NADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----S 433 (487)
T ss_pred ccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----C
Confidence 45799999999999999999997 89999999999999999999999998888888888763 3
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
...+++++++++.++++++|.. +++ ++.+|+|++||++|++|++++....
T Consensus 434 ~~~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~GKv~r~~L~~~~~~~~ 483 (487)
T PRK07638 434 ATKQQLKSFCLQRLSSFKIPKE-WHF--VDEIPYTNSGKIARMEAKSWIENQE 483 (487)
T ss_pred CCHHHHHHHHHHHhhcccCCcE-EEE--ecccCCCCcccccHHHHHHHHhccc
Confidence 5678999999999999999996 888 8999999999999999999877643
No 46
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.87 E-value=2.5e-21 Score=145.99 Aligned_cols=114 Identities=34% Similarity=0.549 Sum_probs=103.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|++++. +|.+||+++.++++|.++++++++++..++.+.+++++.++...
T Consensus 417 ~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~ 496 (547)
T PRK13295 417 ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL 496 (547)
T ss_pred CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCC
Confidence 3689999999999999999986 89999999999999999999999999888899999998877666
Q ss_pred CHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 TAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 ~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
+.+++.+++.+ .++++++|.. +++ ++.+|+|++||++|.+|++++...
T Consensus 497 ~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~lP~t~sgK~~r~~L~~~~~~~ 545 (547)
T PRK13295 497 DFEEMVEFLKAQKVAKQYIPER-LVV--RDALPRTPSGKIQKFRLREMLRGE 545 (547)
T ss_pred CHHHHHHHHHhccCccccCCcE-EEE--eccCCCCCCccccHHHHHHHHhcC
Confidence 77899999986 6999999996 999 899999999999999999987653
No 47
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.87 E-value=1.9e-21 Score=145.18 Aligned_cols=116 Identities=33% Similarity=0.523 Sum_probs=106.5
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|.+++. +|.+||+.+.++++|.++++++.+++..++.+.++++++++...
T Consensus 393 ~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 472 (523)
T PRK08316 393 RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV 472 (523)
T ss_pred hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCC
Confidence 3789999999999999999986 89999999999999999999999999888899999998877667
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
..+++.+++++.++++++|.. +++ ++++|+|++||++|.+|++++.....
T Consensus 473 ~~~~l~~~~~~~l~~~~~p~~-i~~--v~~~p~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 473 TEDELIAHCRARLAGFKVPKR-VIF--VDELPRNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred CHHHHHHHHHHhcccCCCCcE-EEE--ecCCCCCCccceeHHHHHHHHHhhcc
Confidence 788999999999999999996 888 89999999999999999999986543
No 48
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.87 E-value=1.3e-21 Score=148.17 Aligned_cols=112 Identities=32% Similarity=0.513 Sum_probs=101.5
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+++++++|++++. +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++....
T Consensus 431 ~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~ 510 (570)
T PRK04319 431 GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPS 510 (570)
T ss_pred CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCC
Confidence 789999999999999999987 899999999999999999999999998899999999987664333
Q ss_pred ---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 71 ---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 71 ---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.+++..++++.|+.|++|.. +.+ ++.+|+|++||++|++|+++...
T Consensus 511 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~GKv~r~~L~~~~~~ 559 (570)
T PRK04319 511 EELKEEIRGFVKKGLGAHAAPRE-IEF--KDKLPKTRSGKIMRRVLKAWELG 559 (570)
T ss_pred HHHHHHHHHHHHHhcccccCCcE-EEE--eCCCCCCCchhhhHHHHHHHHhC
Confidence 26899999999999999996 889 89999999999999999998654
No 49
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.87 E-value=1.2e-21 Score=146.52 Aligned_cols=110 Identities=35% Similarity=0.574 Sum_probs=101.1
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|+++++|++++. +|.+||+++.+++.|.++++++.+++..++.+.++++++.+.
T Consensus 394 ~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~ 473 (517)
T PRK08008 394 LEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE 473 (517)
T ss_pred ccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCC
Confidence 456899999999999999999996 899999999999999999999999988888899999998776
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
..+..++..+++++++++++|.. +++ ++.+|+|++||++|+.|+
T Consensus 474 ~~~~~~l~~~~~~~l~~~~~P~~-~~~--v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 474 TLSEEEFFAFCEQNMAKFKVPSY-LEI--RKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CCCHHHHHHHHHhhcccccCCcE-EEE--eccCCCCCccceehhhcC
Confidence 67788999999999999999996 888 899999999999998863
No 50
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.87 E-value=2.3e-21 Score=146.22 Aligned_cols=113 Identities=26% Similarity=0.409 Sum_probs=102.1
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..|+.+++++++.++...+
T Consensus 379 ~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~ 458 (540)
T PRK13388 379 HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD 458 (540)
T ss_pred cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC
Confidence 689999999999999999986 899999999999999999999999988888888888887776677
Q ss_pred HHHHHHHHHhh--cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 71 AEEVKQFVEDQ--VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 71 ~~~~~~~l~~~--l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
.++++++++.+ |+++++|.. +++ ++.+|+|++||++|++|+++....
T Consensus 459 ~~~l~~~l~~~~~l~~~~~P~~-~~~--v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 459 PDAFAAFLAAQPDLGTKAWPRY-VRI--AADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred HHHHHHHHHhhccCCcccCCcE-EEE--eccCCCCCcceeeHHhHHHhccCC
Confidence 78899999864 999999995 888 899999999999999999977554
No 51
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.87 E-value=3e-21 Score=146.22 Aligned_cols=114 Identities=32% Similarity=0.591 Sum_probs=105.1
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|+++++|++++. +|.+||+++..++.|.++++++.++...++.+.++++++++...+
T Consensus 444 ~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~ 523 (573)
T PRK05605 444 DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD 523 (573)
T ss_pred CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC
Confidence 479999999999999999986 899999999999999999999999988888999999988776777
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
..++++++++.|+.+++|.. +++ ++++|+|++||++|++|++++.++.
T Consensus 524 ~~~l~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~GKi~r~~L~~~~~~~~ 571 (573)
T PRK05605 524 PEGLRAYCREHLTRYKVPRR-FYH--VDELPRDQLGKVRRREVREELLEKL 571 (573)
T ss_pred HHHHHHHHHHhCccccCCcE-EEE--eccCCCCCcccccHHHHHHHHHHHh
Confidence 89999999999999999996 888 8999999999999999999987654
No 52
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.87 E-value=1.7e-21 Score=146.22 Aligned_cols=109 Identities=28% Similarity=0.566 Sum_probs=98.9
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++++|||+|||+|+++++|++++. +|.+||+.+.++|+|.++++++.++...++.+.+++++.++
T Consensus 404 ~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~- 482 (527)
T TIGR02275 404 FDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP- 482 (527)
T ss_pred cCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-
Confidence 457899999999999999999996 89999999999999999999999999888889999888755
Q ss_pred CCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 68 SVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 68 ~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
..+..++++++++. ++.+++|.. +.+ ++++|+|++||++|+.|+
T Consensus 483 ~~~~~~l~~~l~~~~l~~~~~P~~-i~~--v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 483 ALKAAQLRRFLRERGLAEYKLPDR-VEF--IDSLPLTAVGKIDKKALR 527 (527)
T ss_pred CCCHHHHHHHHHhCCCccccCCCE-EEE--eccCCCCCccceeHHhcC
Confidence 46778999999985 999999996 998 899999999999999863
No 53
>PRK13382 acyl-CoA synthetase; Provisional
Probab=99.87 E-value=1.6e-21 Score=146.87 Aligned_cols=108 Identities=37% Similarity=0.661 Sum_probs=100.4
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+++++++|++++. +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++....
T Consensus 415 ~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~ 494 (537)
T PRK13382 415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASAT 494 (537)
T ss_pred CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCC
Confidence 799999999999999999997 999999999999999999999999988889999999988776677
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~ 115 (126)
.++++++++..|+.+++|.. +.+ ++++|+|++||++|++|++
T Consensus 495 ~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 495 PETLKQHVRDNLANYKVPRD-IVV--LDELPRGATGKILRRELQA 536 (537)
T ss_pred HHHHHHHHHHhccCCCCCcE-EEE--eccCCCCCCCCCcHHhhCC
Confidence 78999999999999999995 998 8999999999999999864
No 54
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.87 E-value=1.8e-21 Score=146.75 Aligned_cols=117 Identities=32% Similarity=0.493 Sum_probs=99.0
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|++++. +|.+||+++..+|+|.+|++++.++...++.+.++++..+.....
T Consensus 401 ~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~ 480 (540)
T PRK05857 401 DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDES 480 (540)
T ss_pred CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChh
Confidence 789999999999999999986 999999999999999999999999888787888877765442211
Q ss_pred -H----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccCc
Q psy4975 71 -A----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDV 124 (126)
Q Consensus 71 -~----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~~ 124 (126)
. +.+...+++.++++++|.. +.+ ++.+|+|++||++|+.|++++.+.....
T Consensus 481 ~~~~l~~~~~~~~~~~l~~~~~P~~-v~~--~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 536 (540)
T PRK05857 481 AARALKHTIAARFRRESEPMARPST-IVI--VTDIPRTQSGKVMRASLAAAATADKARV 536 (540)
T ss_pred hHHHHHHHHHHHHHhhhccccCCeE-EEE--hhcCCCCCCcceeHHHHHHhhhhcccee
Confidence 2 3455566677999999995 999 8999999999999999999998876543
No 55
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.87 E-value=3.4e-21 Score=149.57 Aligned_cols=111 Identities=20% Similarity=0.161 Sum_probs=97.3
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|++|++|++++. +|.+||+++.+++.+.++++++.+++..++.+++++. +...
T Consensus 589 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~ 665 (718)
T PRK08043 589 ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSEL 665 (718)
T ss_pred cCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---Cccc
Confidence 4799999999999999999997 9999999999998888888888888888887777653 2345
Q ss_pred CHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 TAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 ~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
+.+++.+++++. ++.|++|+. +.+ ++++|+|++||++|++|++++...
T Consensus 666 ~~~~l~~~~~~~~l~~~~vP~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~ 714 (718)
T PRK08043 666 TREKLQQYAREHGVPELAVPRD-IRY--LKQLPLLGSGKPDFVTLKSMVDEP 714 (718)
T ss_pred CHHHHHHHHHhcCCCcccCCce-EEE--ecccCcCCCCCcCHHHHHHHHhcc
Confidence 677899999987 999999996 999 999999999999999999988764
No 56
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.87 E-value=5.1e-21 Score=142.59 Aligned_cols=115 Identities=35% Similarity=0.519 Sum_probs=104.8
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|..+|||+|||+++++++|++++. +|.+||+++.++++|.++++++.+++..++.++++++.....
T Consensus 373 ~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~ 452 (504)
T PRK07514 373 FRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGA 452 (504)
T ss_pred cccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCC
Confidence 345889999999999999999986 899999999999999999999999888888889999888766
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..+.+++.+.+++.++++++|.. +++ ++.+|+|++||++|++|++++..
T Consensus 453 ~~~~~~l~~~~~~~l~~~~~p~~-i~~--v~~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 453 ALDEAAILAALKGRLARFKQPKR-VFF--VDELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred CCCHHHHHHHHHhhcccCCCCcE-EEE--eccCCCCCCcceeHHHHHHHHHh
Confidence 67789999999999999999996 888 89999999999999999998764
No 57
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.87 E-value=2.9e-21 Score=143.34 Aligned_cols=109 Identities=39% Similarity=0.631 Sum_probs=98.6
Q ss_pred CCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
.++|||+|||+|+++++|++++. +|.+||+.+.+++.|.++++++.++...++.+.+++++. .
T Consensus 347 ~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~ 424 (471)
T PRK07787 347 TADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--D 424 (471)
T ss_pred cCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--C
Confidence 45899999999999999999986 899999999999999999999999888888899998873 3
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
..+.+++.+++++.++++++|.. +++ ++.+|+|++||++|+.|+++
T Consensus 425 ~~~~~~l~~~l~~~l~~~~~P~~-i~~--~~~iP~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 425 DVAADELIDFVAQQLSVHKRPRE-VRF--VDALPRNAMGKVLKKQLLSE 470 (471)
T ss_pred CCCHHHHHHHHHhhcccccCCcE-EEE--eccCCCCCCccccHHHhccC
Confidence 46778999999999999999995 888 89999999999999999763
No 58
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.87 E-value=4.5e-21 Score=144.98 Aligned_cols=116 Identities=34% Similarity=0.553 Sum_probs=106.5
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+++++++|++++. +|.+||+++.++++|.++++++.++...++.+.++++..++...+
T Consensus 430 ~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~ 509 (563)
T PRK06710 430 DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS 509 (563)
T ss_pred cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC
Confidence 689999999999999999986 899999999999999999999999988888999999888776677
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
.+++.+++++.++.+++|.. +.+ ++++|+|++||++|++|++++..+.++
T Consensus 510 ~~~l~~~~~~~l~~~~~P~~-~~~--v~~iP~t~~GKi~r~~L~~~~~~~~~~ 559 (563)
T PRK06710 510 EEELNQFARKYLAAYKVPKV-YEF--RDELPKTTVGKILRRVLIEEEKRKNED 559 (563)
T ss_pred HHHHHHHHHHhcccccCCcE-EEE--cccCCCCccchhhHHHHHHHHhhcCcc
Confidence 88999999999999999995 888 999999999999999999998876653
No 59
>PRK08315 AMP-binding domain protein; Validated
Probab=99.86 E-value=6.6e-21 Score=143.73 Aligned_cols=117 Identities=32% Similarity=0.601 Sum_probs=105.7
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+.++||+|||+|+++++|++++. ++.+||+++.++++|.++++++++++..++.+.+++++..+..
T Consensus 424 ~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 503 (559)
T PRK08315 424 DADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGAT 503 (559)
T ss_pred CCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCC
Confidence 46899999999999999999986 8999999999999999999999998887788888888876666
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
...++++.++.+.++.+++|.. +++ ++.+|+|++||++|.+|++++....+
T Consensus 504 ~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GK~~r~~L~~~~~~~~~ 554 (559)
T PRK08315 504 LTEEDVRDFCRGKIAHYKIPRY-IRF--VDEFPMTVTGKIQKFKMREMMIEELG 554 (559)
T ss_pred CCHHHHHHHHHhhcccccCCcE-EEE--cccCCCCCCCceeHHHHHHHHHhhhc
Confidence 6778999999999999999995 999 99999999999999999998876544
No 60
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.86 E-value=3e-21 Score=143.98 Aligned_cols=107 Identities=32% Similarity=0.444 Sum_probs=96.0
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+||++|||+|+++++|++++. +|.+||+++.++++|.++++++++++..++.+.+++++..+....
T Consensus 378 ~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~ 457 (501)
T PRK13390 378 PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS 457 (501)
T ss_pred CceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc
Confidence 689999999999999999997 899999999999999999999999998888899988877553322
Q ss_pred ---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 71 ---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 71 ---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
.+++.++++..|+.++.|.. +++ ++++|+|++||++|++|+
T Consensus 458 ~~~~~~l~~~~~~~l~~~~~P~~-~~~--~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 458 DELARELIDYTRSRIAHYKAPRS-VEF--VDELPRTPTGKLVKGLLR 501 (501)
T ss_pred hhhHHHHHHHHHHhcccCCCCcE-EEE--eccCCCCCccceehhhcC
Confidence 46889999999999999995 999 899999999999999874
No 61
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.86 E-value=7.5e-21 Score=143.00 Aligned_cols=117 Identities=27% Similarity=0.411 Sum_probs=103.6
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|+++++|++++. +|.+||+.+.++++|.++++++.+ ...+..+.+++++.++.
T Consensus 402 ~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~vv~~~~~ 480 (540)
T PRK06164 402 LTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGAT-RDGKTVPVAFVIPTDGA 480 (540)
T ss_pred ccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecC-CCCceeEEEEEEeCCCC
Confidence 456899999999999999999886 899999999999999999999887 34456788888887776
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCC---ccchHHHHHHHhcccc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG---KVKRKDLNETKVMRHD 122 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~G---Kv~r~~l~~~~~~~~~ 122 (126)
..+.+++.++++++++++++|.. +++ ++.+|+|++| |++|+.|++++.....
T Consensus 481 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~ 535 (540)
T PRK06164 481 SPDEAGLMAACREALAGFKVPAR-VQV--VEAFPVTESANGAKIQKHRLREMAQARLA 535 (540)
T ss_pred CCCHHHHHHHHHhhcccCcCCcE-EEE--ecCCCCCCCCccccccHHHHHHHHHHhhh
Confidence 67889999999999999999995 888 8999999999 9999999998876543
No 62
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.86 E-value=8.1e-21 Score=142.37 Aligned_cols=113 Identities=38% Similarity=0.612 Sum_probs=104.2
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+++++++|++++. +|.+||+++..+++|.++++++.+++..++.+.+++++.+....
T Consensus 391 ~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 470 (524)
T PRK06188 391 RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAV 470 (524)
T ss_pred cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCC
Confidence 3689999999999999999986 89999999999999999999999988888899999998877667
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..+++.+++++.+++++.|.. +.+ ++.+|+|++||++|.+|++++..
T Consensus 471 ~~~~l~~~~~~~l~~~~~p~~-i~~--v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 471 DAAELQAHVKERKGSVHAPKQ-VDF--VDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred CHHHHHHHHHHhcccCCCCcE-EEE--ecCCCCCccccccHHHHHHHHHh
Confidence 788999999999999999996 999 89999999999999999999854
No 63
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.86 E-value=5.8e-21 Score=148.62 Aligned_cols=114 Identities=28% Similarity=0.340 Sum_probs=96.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHh-cCCCcceEEEEeeecCCCC-CeeEEEEEeC--C
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFR-QHPDVEDVAVIGIPHDVFG-ELPAAVVVPK--P 65 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~-~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~--~ 65 (126)
+++||+|||++++|++|++++. ++.|||+++. .+|+|.++++++++++..| +.+++++++. +
T Consensus 587 g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~ 666 (728)
T PLN03052 587 GKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPP 666 (728)
T ss_pred CCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCC
Confidence 3459999999999999999997 9999999995 7899999999999998776 7899999987 4
Q ss_pred CCCCCHHHHH----HHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 66 NSSVTAEEVK----QFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 66 ~~~~~~~~~~----~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
+...+.++++ +.+++.|+++++|+. +++ +++||+|++||++|+.|++++...
T Consensus 667 g~~~~~~~L~~~i~~~i~~~l~~~~~p~~-i~~--v~~lP~T~sGKi~Rr~Lr~~~~~~ 722 (728)
T PLN03052 667 GSNPDLNELKKIFNSAIQKKLNPLFKVSA-VVI--VPSFPRTASNKVMRRVLRQQLAQE 722 (728)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCccCCCE-EEE--cCCCCCCCchHHHHHHHHHHHHhh
Confidence 4444444444 456677899999985 999 999999999999999999988754
No 64
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.86 E-value=9.4e-21 Score=141.28 Aligned_cols=117 Identities=29% Similarity=0.510 Sum_probs=103.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+++++++|.+++. ++.+||..+.++|+|.+|++++..++..++.+.+++++.++...
T Consensus 367 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 446 (502)
T PRK08276 367 PHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADA 446 (502)
T ss_pred CCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCC
Confidence 4599999999999999999986 89999999999999999999999998888999999998765433
Q ss_pred CH---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 70 TA---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 70 ~~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
+. +++.+.+++.+++++.|.. +++ ++++|+|++||++|+.|++.+....+.
T Consensus 447 ~~~~~~~i~~~~~~~l~~~~~p~~-i~~--~~~lP~t~~GKi~r~~L~~~~~~~~~~ 500 (502)
T PRK08276 447 GDALAAELIAWLRGRLAHYKCPRS-IDF--EDELPRTPTGKLYKRRLRDRYWEGRQR 500 (502)
T ss_pred ChhhHHHHHHHHHhhccCCCCCcE-EEE--ecCCCCCcccchhHHHHHHHHHhhhhh
Confidence 33 4899999999999999996 888 899999999999999999998765543
No 65
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.86 E-value=6.5e-21 Score=142.06 Aligned_cols=110 Identities=37% Similarity=0.687 Sum_probs=100.8
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
.++|||+|||+|+++++|++++. ++.+||+.+.++++|.++++++.+++..++.+.++++..++..
T Consensus 389 ~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 468 (513)
T PRK07656 389 DADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAE 468 (513)
T ss_pred ccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCC
Confidence 35899999999999999999986 8999999999999999999999998888888899998876667
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~ 115 (126)
.+..++.++++..|+++++|.. +.+ ++++|+|++||++|+.|++
T Consensus 469 ~~~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 469 LTEEELIAYCREHLAKYKVPRS-IEF--LDELPKNATGKVLKRALRE 512 (513)
T ss_pred CCHHHHHHHHHhhcccccCCCE-EEE--ecCCCCCCccceeHHHHhc
Confidence 7788999999999999999996 888 8999999999999999875
No 66
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.86 E-value=1.4e-20 Score=140.70 Aligned_cols=118 Identities=29% Similarity=0.530 Sum_probs=106.4
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
..+|||+|||+++++++|++++. ++.+||+.+.++++|.++++++.++...++.+.+++++..+..
T Consensus 376 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 455 (509)
T PRK12406 376 DRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGAT 455 (509)
T ss_pred cCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCC
Confidence 35899999999999999999986 8999999999999999999999998888888888888876655
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
...+++..++++.++++++|.. +.+ ++.+|+|++||++|++|++.+......
T Consensus 456 ~~~~~l~~~l~~~l~~~~~P~~-i~~--~~~iP~t~~GK~~r~~L~~~~~~~~~~ 507 (509)
T PRK12406 456 LDEADIRAQLKARLAGYKVPKH-IEI--MAELPREDSGKIFKRRLRDPYWANAGR 507 (509)
T ss_pred CCHHHHHHHHHHhcccCCCCcE-EEE--eccCCCCCccchhHHHHHHHHHhhccc
Confidence 6789999999999999999996 888 899999999999999999988766543
No 67
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.86 E-value=6.1e-21 Score=143.58 Aligned_cols=109 Identities=33% Similarity=0.577 Sum_probs=99.7
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+++|||+|||+|+++++|++++. +|.+||+++.++++|.++++++.++...++.+.+++++..+..
T Consensus 414 ~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~ 493 (538)
T TIGR03208 414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCT 493 (538)
T ss_pred cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCC
Confidence 35899999999999999999997 8999999999999999999999998888889999999877666
Q ss_pred CCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 69 VTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 69 ~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
.+..++.++++. .++.+++|.. +.+ ++.+|+|++||++|++|+
T Consensus 494 ~~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 494 LDFAAMVAFLKAQKVALQYIPER-LEV--VDALPATPAGKIQKFRLR 537 (538)
T ss_pred CCHHHHHHHHHhcchhhccCCcE-EEE--eccCCCCCccccchHhhc
Confidence 778899999985 7999999996 888 999999999999999985
No 68
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.86 E-value=8.7e-21 Score=143.53 Aligned_cols=111 Identities=33% Similarity=0.557 Sum_probs=101.6
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+++++++|++++. +|.+||+.+.++++|.++++++.+++..++.+.+++++..+...+
T Consensus 441 dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~ 520 (567)
T PRK06178 441 DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLT 520 (567)
T ss_pred CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCC
Confidence 789999999999999999986 899999999999999999999999888888888999887766677
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.+++.+++++.++.+++|. +++ ++++|+|++||++|++|+++++.
T Consensus 521 ~~~l~~~~~~~l~~~~~p~--i~~--v~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 521 AAALQAWCRENMAVYKVPE--IRI--VDALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred HHHHHHHHHhcCcccCCce--EEE--eccCCCCCccceeHHHHHHHHHh
Confidence 8899999999999999995 677 79999999999999999998865
No 69
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.86 E-value=8.7e-21 Score=141.29 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=94.3
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeee-cCCCCCeeEEEEEeCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIP-HDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 68 (126)
+++||+|||+|+++++ +|++. +|.+||+.+.++|+|.+|+++++. ....++.+++++++.....
T Consensus 372 ~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~ 450 (502)
T TIGR01734 372 GQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDF 450 (502)
T ss_pred CcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccccc
Confidence 4579999999999966 88886 999999999999999999999876 4445677888888765432
Q ss_pred CC----HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 69 VT----AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 69 ~~----~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
.. .+++++.+++.+++++.|+. +++ ++.+|+|++||++|++|++++.
T Consensus 451 ~~~~~~~~~i~~~~~~~l~~~~~P~~-~~~--v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 451 EKEFQLTKAIKKELKKSLPAYMIPRK-FIY--RDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred ccchhhHHHHHHHHhhhChhhcCCcE-EEE--ccccCCCCCCcccHHHHHHhhc
Confidence 22 26789999999999999996 999 9999999999999999999764
No 70
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.85 E-value=1.2e-20 Score=142.76 Aligned_cols=111 Identities=34% Similarity=0.593 Sum_probs=99.9
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|+++++|++++. +|.+||+.+.+++.|.++++++.++...++.+.+++++.+.
T Consensus 437 ~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~- 515 (562)
T PRK12492 437 LDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP- 515 (562)
T ss_pred ccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-
Confidence 346799999999999999999996 89999999999999999999999988888888888877543
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
....+++.+++.++++++++|.. +.+ ++.+|+|++||++|++|+++
T Consensus 516 ~~~~~~i~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 516 GLSVEELKAYCKENFTGYKVPKH-IVL--RDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred CCCHHHHHHHHHHhcccccCCcE-EEE--eccCCCCCCCceeHHHHHhh
Confidence 35678999999999999999996 999 89999999999999999875
No 71
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.85 E-value=9.7e-21 Score=143.02 Aligned_cols=110 Identities=35% Similarity=0.598 Sum_probs=98.7
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+++|||+|||+|+++++|++++. +|.+||+.+..+++|.++++++.++...++.+.++++.. ...
T Consensus 434 ~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~ 512 (560)
T PRK08751 434 DADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPA 512 (560)
T ss_pred ccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCC
Confidence 46799999999999999999987 899999999999999999999999888888787777654 334
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
...+++++++.+.++++++|.. +++ ++.+|+|++||++|+.|++.
T Consensus 513 ~~~~~l~~~~~~~l~~~~~P~~-v~~--v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 513 LTAEDVKAHARANLTGYKQPRI-IEF--RKELPKTNVGKILRRELRDA 557 (560)
T ss_pred CCHHHHHHHHHHhhhhccCCeE-EEE--hhhCCCCccccccHHHHHHh
Confidence 5678999999999999999995 999 99999999999999999876
No 72
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.85 E-value=5.4e-21 Score=143.75 Aligned_cols=112 Identities=27% Similarity=0.385 Sum_probs=92.3
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+.+|||+|||+|+++ +|+|+++ +|.+||+++.+||+|.+|++++++++..++...++++.... .
T Consensus 393 ~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~-~ 470 (525)
T PRK05851 393 DPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR-G 470 (525)
T ss_pred CCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEec-C
Confidence 357999999999997 7999987 99999999999999999999999988877766666554311 2
Q ss_pred CCHHHHHHHHHhhcCCC--CCCCccEEEeecC--cccCCCCCccchHHHHHHHhc
Q psy4975 69 VTAEEVKQFVEDQVNPS--KRLSGGVFLCSFD--FIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~--~~p~~~~~~~~~~--~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.+.+.+.+.++++++.+ ++|+. +.+ ++ .||+|++||++|+.|++.+++
T Consensus 471 ~~~~~~~~~~~~~l~~~l~~~P~~-~~~--v~~~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 471 PDEAGARSEVVQRVASECGVVPSD-VVF--VAPGSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred cchHHHHHHHHHHHHHHhCCCccE-EEE--ECCCCcCcCcchHHHHHHHHHHHHh
Confidence 34456677777777776 89995 888 55 999999999999999998865
No 73
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.85 E-value=1.2e-20 Score=140.75 Aligned_cols=108 Identities=20% Similarity=0.318 Sum_probs=99.1
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
++||+|||+|+++++|++++. +|.+||+.+.++|.|.++++++.+++..++.++++++.......+
T Consensus 393 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 472 (515)
T TIGR03098 393 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELD 472 (515)
T ss_pred ccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCC
Confidence 468999999999999999986 899999999999999999999999988899999998876666677
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~ 115 (126)
..+++++++++++++++|.. +++ ++.+|+|++||++|++|++
T Consensus 473 ~~~l~~~l~~~l~~~~~p~~-i~~--v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 473 RAALLAECRARLPNYMVPAL-IHV--RQALPRNANGKIDRKALAA 514 (515)
T ss_pred HHHHHHHHHhhCccccCCCE-EEE--eccCCCCCCCCCcHHHhcc
Confidence 88999999999999999995 999 8999999999999999864
No 74
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.85 E-value=1.6e-20 Score=141.44 Aligned_cols=117 Identities=35% Similarity=0.523 Sum_probs=103.6
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCC-CC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP-NS 67 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~ 67 (126)
+.+|||+|||+++++++|++++. +|.+||+++.++++|.++++++.+++..++.+.+++++.+ ..
T Consensus 407 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 486 (547)
T PRK06087 407 DEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH 486 (547)
T ss_pred CCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC
Confidence 45799999999999999999997 8999999999999999999999999888889999998875 34
Q ss_pred CCCHHHHHHHHH-hhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 68 SVTAEEVKQFVE-DQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 68 ~~~~~~~~~~l~-~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
..+.+++.+++. ..++++++|.. +.+ ++.+|+|++||++|+.|++++..+..
T Consensus 487 ~~~~~~~~~~~~~~~l~~~~~P~~-i~~--v~~iP~t~sGK~~r~~l~~~~~~~~~ 539 (547)
T PRK06087 487 SLTLEEVVAFFSRKRVAKYKYPEH-IVV--IDKLPRTASGKIQKFLLRKDIMRRLT 539 (547)
T ss_pred CCCHHHHHHHHHhccccccCCCeE-EEE--eccCCCCCCCcCcHHHHHHHHHHHhh
Confidence 456678888875 46999999996 999 89999999999999999998877643
No 75
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.85 E-value=6.2e-21 Score=146.14 Aligned_cols=115 Identities=23% Similarity=0.370 Sum_probs=96.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhc-CCCcce--EEEEeeec----------------
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVED--VAVIGIPH---------------- 50 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~-~~~v~~--~~~~~~~~---------------- 50 (126)
++|||+|||+|+++ +|+|+|+ +|.+||+.+.+ +|.|.+ ++++++++
T Consensus 462 ~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~ 540 (631)
T PRK07769 462 DALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLK 540 (631)
T ss_pred CCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccc
Confidence 36999999999995 8999997 99999999986 899997 89999888
Q ss_pred ---CCCCCeeEEEEEeCCC-CCCCHHHHHHHHHhhcCC-CCC-CCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 51 ---DVFGELPAAVVVPKPN-SSVTAEEVKQFVEDQVNP-SKR-LSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 51 ---~~~~~~~~~~v~~~~~-~~~~~~~~~~~l~~~l~~-~~~-p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
+.+++.+++++++.++ ...+.+++.+++++.++. +++ |+. +.++..+.||+|++||++|++|++.+...
T Consensus 541 ~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~-~~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 615 (631)
T PRK07769 541 FDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRD-VLLVPAGSIPRTSSGKIARRACRAAYLDG 615 (631)
T ss_pred cccCCCCccEEEEEEecCccccccHHHHHHHHHHHHHHHcCCCccE-EEEECCCccccCCCcHHHHHHHHHHHHcC
Confidence 4577889999988766 345678999999999986 564 775 77833348999999999999999987643
No 76
>PRK09274 peptide synthase; Provisional
Probab=99.85 E-value=8.3e-21 Score=143.16 Aligned_cols=114 Identities=21% Similarity=0.348 Sum_probs=93.8
Q ss_pred CCCC--ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975 3 DDDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 66 (126)
Q Consensus 3 ~~~g--~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 66 (126)
+.+| ||+|||+|++|++|+|++. +|.+||+++.+||+|.+|++++++++. ++.+.+++++.++
T Consensus 415 ~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~ 493 (552)
T PRK09274 415 DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPG 493 (552)
T ss_pred cCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCc
Confidence 3456 9999999999999999997 999999999999999999999998754 5677888888776
Q ss_pred CCCCHHHHHHHHHhhcCCC---CCCCccEEEeecCcccCC--CCCccchHHHHHHHhcc
Q psy4975 67 SSVTAEEVKQFVEDQVNPS---KRLSGGVFLCSFDFIPRT--MSGKVKRKDLNETKVMR 120 (126)
Q Consensus 67 ~~~~~~~~~~~l~~~l~~~---~~p~~~~~~~~~~~lp~t--~~GKv~r~~l~~~~~~~ 120 (126)
...+..++.+.+++.+..+ +.|.. +++ ++.||+| ++||++|++|++++...
T Consensus 494 ~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~--~~~lP~t~~~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 494 VACSKSALYQELRALAAAHPHTAGIER-FLI--HPSFPVDIRHNAKIFREKLAVWAAKQ 549 (552)
T ss_pred cccchHHHhhhhHHHHHhcCCCcceeE-Eec--cCCCCccccccccccHHHHHHHHHHh
Confidence 5555555666666665544 56664 778 8999999 79999999999987654
No 77
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.85 E-value=1.6e-20 Score=137.51 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=95.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|++++. +|.+||+.+.++++|.++++++.+++..++.+.++++... ..
T Consensus 289 ~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~ 366 (414)
T PRK08308 289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EI 366 (414)
T ss_pred CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CC
Confidence 4689999999999999999987 9999999999999999999999999888888888887653 45
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
+..++++++++.++++++|.. +++ ++.+|+|++||++|+.|+
T Consensus 367 ~~~~l~~~l~~~l~~~~~P~~-i~~--v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 367 DPVQLREWCIQHLAPYQVPHE-IES--VTEIPKNANGKVSRKLLE 408 (414)
T ss_pred CHHHHHHHHHHhCccccCCcE-EEE--eccCCCCCCcCeehhhhh
Confidence 678999999999999999996 999 899999999999999543
No 78
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.85 E-value=2.5e-20 Score=140.47 Aligned_cols=115 Identities=30% Similarity=0.588 Sum_probs=103.1
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC-CC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-SV 69 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 69 (126)
+|||+|||+++++++|++++. ++.+||+++.++++|.+|++++.++...++...+++++.... ..
T Consensus 398 ~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 477 (542)
T PRK07786 398 GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAAL 477 (542)
T ss_pred CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCC
Confidence 689999999999999999886 899999999999999999999998888788888888876543 35
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
..+++.+++++.+++++.|.. +++ ++.+|+|++||++|++|++++.....
T Consensus 478 ~~~~l~~~l~~~l~~~~~P~~-i~~--v~~iP~t~~GKv~r~~L~~~~~~~~~ 527 (542)
T PRK07786 478 TLEDLAEFLTDRLARYKHPKA-LEI--VDALPRNPAGKVLKTELRERYGACVN 527 (542)
T ss_pred CHHHHHHHHHhhccCCCCCCE-EEE--eccCCCCCcccccHHHHHHHHHhhhc
Confidence 678999999999999999996 999 89999999999999999999987543
No 79
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.85 E-value=2.4e-21 Score=148.99 Aligned_cols=118 Identities=31% Similarity=0.379 Sum_probs=92.7
Q ss_pred CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 66 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 66 (126)
|+++|||+|||+|++|++|+|+|. +|.+||+++.+||.|.+|+|++. ..++.+.|++++..+
T Consensus 483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~ 559 (651)
T PLN02736 483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPE 559 (651)
T ss_pred hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHH
Confidence 467899999999999999999997 89999999999999999999973 356789999998643
Q ss_pred C--------CCCHH---------HHHHHH----H-----hhcCCCCCCCccEEEeecCccc------CCCCCccchHHHH
Q psy4975 67 S--------SVTAE---------EVKQFV----E-----DQVNPSKRLSGGVFLCSFDFIP------RTMSGKVKRKDLN 114 (126)
Q Consensus 67 ~--------~~~~~---------~~~~~l----~-----~~l~~~~~p~~~~~~~~~~~lp------~t~~GKv~r~~l~ 114 (126)
. ..+.. ++++.+ + +.|+.|++|++ +.+ ++..+ +|++||++|+.++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~~~--~~~~~~~~~~~lT~~~Ki~R~~i~ 636 (651)
T PLN02736 560 VLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKA-VTL--VPEPFTVENGLLTPTFKVKRPQAK 636 (651)
T ss_pred HHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeE-EEE--eCCCCcCCCCcCChhhhhhHHHHH
Confidence 1 11111 122221 1 25999999997 888 56554 8999999999999
Q ss_pred HHHhccccCcC
Q psy4975 115 ETKVMRHDDVT 125 (126)
Q Consensus 115 ~~~~~~~~~~~ 125 (126)
+.|...++..|
T Consensus 637 ~~~~~~i~~~y 647 (651)
T PLN02736 637 AYFAKAISDMY 647 (651)
T ss_pred HHHHHHHHHHH
Confidence 99988776654
No 80
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=99.85 E-value=1.3e-20 Score=142.25 Aligned_cols=109 Identities=23% Similarity=0.271 Sum_probs=89.1
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcce------EEEEeeecCCCCCeeEEEEE
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVED------VAVIGIPHDVFGELPAAVVV 62 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~------~~~~~~~~~~~~~~~~~~v~ 62 (126)
+++|||+|||+|++|++|++++. +|.+||+++.+||+|.+ +++++.++.. ..+.++++
T Consensus 407 ~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~ 484 (539)
T PRK06334 407 GGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTT 484 (539)
T ss_pred CCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEe
Confidence 45789999999999999999987 99999999999999987 6777766432 23334443
Q ss_pred eCCCCCCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 63 PKPNSSVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. ..+.++++++++.. ++.|+.|+. +.+ ++.+|+|++||++|+.|+++....
T Consensus 485 ~----~~~~~~~~~~l~~~~~~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~ 536 (539)
T PRK06334 485 F----PTSISEVNDILKNSKTSSILKISY-HHQ--VESIPMLGTGKPDYCSLNALAKSL 536 (539)
T ss_pred c----cCChHHHHHHHHhcCCcccccchh-eee--ecccccccCCcccHHHHHHHHHHh
Confidence 2 13567888999886 789999995 888 999999999999999999986553
No 81
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.85 E-value=2.5e-20 Score=139.70 Aligned_cols=107 Identities=38% Similarity=0.630 Sum_probs=99.0
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|++++. +|.+||..+.+++.|.++++++.++...++.+.+++++..+...+
T Consensus 395 ~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~ 474 (516)
T PRK13383 395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVD 474 (516)
T ss_pred cCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC
Confidence 699999999999999999996 899999999999999999999999888888999999988766667
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
..++++++++.++++++|.. +.+ ++.+|+|++||++|+.|+
T Consensus 475 ~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 475 AAQLRDYLKDRVSRFEQPRD-INI--VSSIPRNPTGKVLRKELP 515 (516)
T ss_pred HHHHHHHHHHhcccCCCCcE-EEE--eCCCCCCCCCcCcHHHhC
Confidence 78999999999999999995 888 899999999999999874
No 82
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.84 E-value=5.5e-20 Score=137.07 Aligned_cols=112 Identities=40% Similarity=0.680 Sum_probs=103.7
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+++++++|++++. ++.+||+.+.++++|.++++++.+++..++.+.+++++.++...+
T Consensus 394 ~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (521)
T PRK06187 394 GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD 473 (521)
T ss_pred CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC
Confidence 569999999999999999886 899999999999999999999999888888999999988777778
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..++++++++.++.++.|.. +.+ ++.+|+|++||++|..|++++..
T Consensus 474 ~~~l~~~l~~~l~~~~~p~~-i~~--v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 474 AKELRAFLRGRLAKFKLPKR-IAF--VDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred HHHHHHHHHHhccCCCCceE-EEE--ccCCCCCCCCCeeHHHHHHHHhc
Confidence 89999999999999999996 888 89999999999999999999875
No 83
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.84 E-value=3.4e-20 Score=149.61 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=99.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
++|||+|||+|++|++|++++. +|.+||+.+.+++.+.++++++++++..++.+.+++. ....
T Consensus 1008 ~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~ 1084 (1140)
T PRK06814 1008 ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDA 1084 (1140)
T ss_pred CCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCc
Confidence 5899999999999999999987 9999999999999999999999999888887766653 2345
Q ss_pred CHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 70 TAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 70 ~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
+.+++.+++++. ++++++|.. +.+ ++++|+|++||++|++|++++......
T Consensus 1085 ~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~~ 1136 (1140)
T PRK06814 1085 TRAAFLAHAKAAGASELMVPAE-IIT--IDEIPLLGTGKIDYVAVTKLAEEAAAK 1136 (1140)
T ss_pred CHHHHHHHHHHcCCCcccCCcE-EEE--ecCcCCCCCCCCcHHHHHHHHHHhhcc
Confidence 678889999875 999999996 888 899999999999999999998876543
No 84
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.84 E-value=4.4e-20 Score=136.94 Aligned_cols=111 Identities=33% Similarity=0.697 Sum_probs=99.5
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+++++++|++++. ++.+||+.+.++++|.++++++..++..+....+++++. ...
T Consensus 358 ~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~ 435 (483)
T PRK03640 358 QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEV 435 (483)
T ss_pred hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCC
Confidence 3689999999999999999986 899999999999999999999998888777788877754 356
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
+.++++++++..|+++++|.. +++ ++.+|+|++||++|+.|++++..
T Consensus 436 ~~~~l~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 436 TEEELRHFCEEKLAKYKVPKR-FYF--VEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred CHHHHHHHHHHhccCCCCCcE-EEE--eCCCCCCCccceeHHHHHHHHhh
Confidence 678899999999999999995 888 89999999999999999998864
No 85
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.84 E-value=4.7e-20 Score=139.28 Aligned_cols=111 Identities=32% Similarity=0.524 Sum_probs=99.6
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
+..+|||+|||+++++++|++++. +|.+||+++.++++|.++++++.++...++.+.++++... .
T Consensus 431 ~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~ 509 (557)
T PRK07059 431 MTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-P 509 (557)
T ss_pred cccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-C
Confidence 346899999999999999999996 8999999999999999999999999888888888887654 3
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
....+++..++.+.++++++|.. +.+ ++.+|+|++||++|+.|+++
T Consensus 510 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 510 ALTEEDVKAFCKERLTNYKRPKF-VEF--RTELPKTNVGKILRRELRDG 555 (557)
T ss_pred CCCHHHHHHHHHHhcccccCCcE-EEE--eccCCCCcccceeHHHHHhh
Confidence 45678899999999999999995 999 99999999999999999865
No 86
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.84 E-value=6.5e-20 Score=137.24 Aligned_cols=113 Identities=29% Similarity=0.463 Sum_probs=100.8
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC--
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-- 68 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 68 (126)
+|||+|||+|+++++|++++. ++.+||+++.++|.|.++++++.+++..++.+.+++++.++..
T Consensus 381 ~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (511)
T PRK13391 381 GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPG 460 (511)
T ss_pred CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcc
Confidence 499999999999999999996 8999999999999999999999999888888888888765432
Q ss_pred -CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 69 -VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 69 -~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
...+++.++++..+++++.|.. +.+ ++++|+|++||++|+.|++.+...
T Consensus 461 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~gKv~r~~l~~~~~~~ 510 (511)
T PRK13391 461 PALAAELIAFCRQRLSRQKCPRS-IDF--EDELPRLPTGKLYKRLLRDRYWGN 510 (511)
T ss_pred cchHHHHHHHHHhhcccCcCCcE-EEE--eecCCCCCccceeHHHHHHHhhcc
Confidence 2347899999999999999995 998 999999999999999999988654
No 87
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.84 E-value=1.7e-20 Score=153.62 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=95.4
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS- 68 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 68 (126)
++|||+|||+|+++++|+++|+ +|.+||+++.++|.|.+++++...++..++.+++++++.....
T Consensus 676 ~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~ 755 (1389)
T TIGR03443 676 RDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDE 755 (1389)
T ss_pred ccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCcccc
Confidence 4689999999999999999997 9999999999999999999998888777788999988762210
Q ss_pred -------------------------CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 69 -------------------------VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 69 -------------------------~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
...+++++++++.|+.|++|.. +++ ++.||+|++||++|++|.+.
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~-~~~--~~~lP~t~~GKidr~~L~~~ 825 (1389)
T TIGR03443 756 LEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTV-IVP--LKKLPLNPNGKVDKPALPFP 825 (1389)
T ss_pred ccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCce-EEE--cccCCCCCCccccHhhcCCC
Confidence 1136788999999999999995 888 89999999999999999643
No 88
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.84 E-value=8.3e-20 Score=137.49 Aligned_cols=114 Identities=34% Similarity=0.501 Sum_probs=102.3
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|++++. +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++...+
T Consensus 415 ~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~ 494 (545)
T PRK08162 415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT 494 (545)
T ss_pred CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC
Confidence 689999999999999999996 899999999999999999999999888788899999888776677
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
.++++++++..++++++|.. +.+ .++|+|++||++|+.|++.+....+
T Consensus 495 ~~~l~~~~~~~l~~~~~P~~-~~~---~~iP~t~~gK~~r~~l~~~~~~l~~ 542 (545)
T PRK08162 495 EEEIIAHCREHLAGFKVPKA-VVF---GELPKTSTGKIQKFVLREQAKSLKA 542 (545)
T ss_pred HHHHHHHHHHhcccccCCcE-EEe---cccCCCCCcCCcHHHHHHHHhhhhh
Confidence 88999999999999999995 655 5799999999999999998776443
No 89
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.83 E-value=1.1e-19 Score=146.42 Aligned_cols=111 Identities=23% Similarity=0.232 Sum_probs=96.9
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCC--cceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPD--VEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++|||+|||+|++|++|++++. +|.+||+++.++|+ +.++++++++++..++.+.++++..
T Consensus 1017 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~--- 1093 (1146)
T PRK08633 1017 GIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG--- 1093 (1146)
T ss_pred CCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---
Confidence 4599999999999999999997 99999999999984 6679999999998898888888762
Q ss_pred CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+.+++++++.+ .+++++.|.. +++ ++++|+|++||++|++|+++....
T Consensus 1094 ~~~~~~l~~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1094 AEDVEELKRAIKESGLPNLWKPSR-YFK--VEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred ccCHHHHHHHHHhcCCCcccCCcE-EEE--ecCcCCCCCCCCcHHHHHHHHHHh
Confidence 3456788888875 5999999996 888 999999999999999999987653
No 90
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.83 E-value=1.4e-19 Score=134.70 Aligned_cols=111 Identities=28% Similarity=0.287 Sum_probs=95.9
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS- 68 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 68 (126)
+.+||+|||+|++ ++|++++. +|.+||+.+..+|+|.++++++..+...++.+++++++.++..
T Consensus 374 g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 452 (503)
T PRK04813 374 GQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE 452 (503)
T ss_pred CceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc
Confidence 3469999999999 89999986 8999999999999999999999877777788888888765421
Q ss_pred ---CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 69 ---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 69 ---~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
...+++++++.+.++++++|.. +++ ++.+|+|++||++|++|++.+.
T Consensus 453 ~~~~~~~~l~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 453 REFELTKAIKKELKERLMEYMIPRK-FIY--RDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred ccchhHHHHHHHHHhhCccccCCeE-EEE--eccCCCCCCCCCcHHHHHHHhc
Confidence 1125689999999999999996 888 8999999999999999998765
No 91
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.82 E-value=8.2e-20 Score=139.62 Aligned_cols=113 Identities=26% Similarity=0.377 Sum_probs=92.9
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhc-CCCcce--EEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVED--VAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~-~~~v~~--~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
++||+|||+|+++ +|+|+|. +|.+||+++.+ +|.|.+ +++++++++. ++.+.+++++.++.
T Consensus 475 ~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~ 552 (612)
T PRK12476 475 GTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGT 552 (612)
T ss_pred CCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCc
Confidence 4699999999985 9999997 99999999985 799998 6778887776 77888888887653
Q ss_pred -CCCHHHHHHHHHhhcC-CCCC-CCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 -SVTAEEVKQFVEDQVN-PSKR-LSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 -~~~~~~~~~~l~~~l~-~~~~-p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+.+++.+++++.+. .+++ |+. +.++..+.||+|++||++|++|++++...
T Consensus 553 ~~~~~~~l~~~~~~~l~~~~~~~p~~-v~~v~~~~lP~t~~GKi~r~~L~~~~~~~ 607 (612)
T PRK12476 553 SRADPAPAIDAIRAAVSRRHGLAVAD-VRLVPAGAIPRTTSGKLARRACRAQYLDG 607 (612)
T ss_pred ccccHHHHHHHHHHHHHHhhCCcceE-EEEECCCCcCcCCchHHHHHHHHHHHHcC
Confidence 2466788889999877 4777 564 77844457999999999999999998653
No 92
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.82 E-value=2.2e-19 Score=135.70 Aligned_cols=113 Identities=34% Similarity=0.509 Sum_probs=100.2
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+++++++|++++. +|.+||+.+.++++|.++++++.++...++.+.++++..+ ...
T Consensus 430 ~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~ 508 (560)
T PRK08974 430 KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSL 508 (560)
T ss_pred hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCC
Confidence 4689999999999999999986 8999999999999999999999999888877777776543 345
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+++.+++.+.+++++.|.. +.+ ++++|+|++||++|+.|++....+
T Consensus 509 ~~~~l~~~l~~~l~~~~~P~~-~~~--~~~lP~t~~GK~~r~~l~~~~~~~ 556 (560)
T PRK08974 509 TEEELITHCRRHLTGYKVPKL-VEF--RDELPKSNVGKILRRELRDEARAK 556 (560)
T ss_pred CHHHHHHHHHhhcccccCCcE-EEE--hhhCCCCCCCcEeHHHHHHHHHhh
Confidence 678899999999999999996 999 999999999999999999987654
No 93
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.82 E-value=1.7e-19 Score=137.06 Aligned_cols=121 Identities=28% Similarity=0.368 Sum_probs=100.5
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcc--eEEEEeeecCCCCCeeEEEEEeCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVE--DVAVIGIPHDVFGELPAAVVVPKP 65 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~--~~~~~~~~~~~~~~~~~~~v~~~~ 65 (126)
+..+|||+|||+|++ ++|+++++ +|.+||+++.++|+|. +|++++++++. +..+.++++..+
T Consensus 435 ~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~ 512 (579)
T PRK09192 435 LAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRI 512 (579)
T ss_pred ccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecC
Confidence 346899999999999 89999997 8999999999999998 89999998875 447777777665
Q ss_pred CCCCCHHHHHHHHHhhcC-CCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccCcC
Q psy4975 66 NSSVTAEEVKQFVEDQVN-PSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDVT 125 (126)
Q Consensus 66 ~~~~~~~~~~~~l~~~l~-~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~~~ 125 (126)
+...+.+++.+++++.+. .++.|.. +.++..+.+|+|++||++|++|++++.....+.+
T Consensus 513 ~~~~~~~~l~~~~~~~l~~~~~~~~~-i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~~~~ 572 (579)
T PRK09192 513 SDEERRGQLIHALAALVRSEFGVEAA-VELVPPHSLPRTSSGKLSRAKAKKRYLSGAFASL 572 (579)
T ss_pred CChHHHHHHHHHHHHHHHHHhCCCce-EEEeCCCCcCCCCCcchhHHHHHHHHHcCCCCcc
Confidence 555566889999999874 6888885 7774446999999999999999999887655443
No 94
>PRK12316 peptide synthase; Provisional
Probab=99.81 E-value=1.1e-19 Score=160.71 Aligned_cols=110 Identities=23% Similarity=0.326 Sum_probs=100.4
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
+++||+|||+|+++++|+|+++ +|.+||+++.++|+|.++++++..+. .++.+++++++.++...
T Consensus 2379 ~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~ 2457 (5163)
T PRK12316 2379 GERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAED 2457 (5163)
T ss_pred CCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCcc
Confidence 4679999999999999999997 99999999999999999999988665 67889999998877777
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK 117 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~ 117 (126)
..+++++++.+.|+.||+|.. +++ ++.||+|++||++|++|.+..
T Consensus 2458 ~~~~l~~~l~~~Lp~~~vP~~-~~~--l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316 2458 LLAELRAWLAARLPAYMVPAH-WVV--LERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred CHHHHHHHHHhhCchhcCcce-Eee--ecccCCCCCCccCHhhcCCCc
Confidence 889999999999999999996 888 899999999999999997654
No 95
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.81 E-value=2.4e-19 Score=131.47 Aligned_cols=105 Identities=25% Similarity=0.546 Sum_probs=94.5
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+++++++|++++. ++.+||..+.+++.|.++++++..+...+..+.+++++.. ..
T Consensus 318 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~ 395 (436)
T TIGR01923 318 QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES--DI 395 (436)
T ss_pred cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC--CC
Confidence 4699999999999999999997 8999999999999999999999988777778888888764 35
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHH
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l 113 (126)
+..++.+++++.++++++|.. +.+ ++.+|+|++||++|++|
T Consensus 396 ~~~~l~~~l~~~l~~~~~p~~-i~~--~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 396 SQAKLIAYLTEKLAKYKVPIA-FEK--LDELPYNASGKILRNQL 436 (436)
T ss_pred CHHHHHHHHHHhhhCCCCCeE-EEE--ecCCCCCCCCceecccC
Confidence 678899999999999999996 888 89999999999999865
No 96
>PRK12316 peptide synthase; Provisional
Probab=99.81 E-value=1.7e-19 Score=159.56 Aligned_cols=109 Identities=24% Similarity=0.284 Sum_probs=98.4
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+++|||+|||+|+++++|+|+++ +|.+||+++.++|+|.+|+|++.+ ++.+++++++.++..
T Consensus 883 ~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~ 958 (5163)
T PRK12316 883 AGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGG 958 (5163)
T ss_pred CCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCC
Confidence 45679999999999999999997 999999999999999999999886 567999999877666
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
...+.+++++++.|++||+|+. +++ ++.+|+|++||++|++|.+...
T Consensus 959 ~~~~~l~~~l~~~Lp~y~vP~~-i~~--v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 959 DWREALKAHLAASLPEYMVPAQ-WLA--LERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred CCHHHHHHHHHhhCCCccCCCe-EEE--HhhCCCCCCCChhHHhhcCccc
Confidence 6778999999999999999996 999 9999999999999999987543
No 97
>PRK12467 peptide synthase; Provisional
Probab=99.81 E-value=9e-20 Score=159.26 Aligned_cols=112 Identities=24% Similarity=0.296 Sum_probs=99.1
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
+++||+|||+|+++++|+++++ +|.+||+++.++|+|.+|++++.. ...++.+++++++......
T Consensus 3469 g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~-~~~~~~lva~v~~~~~~~~ 3547 (3956)
T PRK12467 3469 GGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD-GAGGKQLVAYVVPADPQGD 3547 (3956)
T ss_pred CceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEec-CCCCcEEEEEEeCCCCCcc
Confidence 4578999999999999999997 999999999999999999998774 4457789999988766556
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..+.+++++++.|+.||+|.. +++ ++.||+|++||++|++|.+....
T Consensus 3548 ~~~~l~~~l~~~Lp~y~vP~~-~~~--l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3548 WRETLRDHLAASLPDYMVPAQ-LLV--LAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred cHHHHHHHHhccCChhhCCCe-eee--eccCCCCCCCccchhhcCCCCcc
Confidence 778999999999999999996 888 89999999999999999876543
No 98
>PLN02479 acetate-CoA ligase
Probab=99.81 E-value=4.3e-19 Score=134.52 Aligned_cols=111 Identities=31% Similarity=0.559 Sum_probs=97.0
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC--
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-- 68 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 68 (126)
+|||+|||+|+++++|++++. +|.+||+++..+|.|.++++++.++...++.+.+++++..+..
T Consensus 429 ~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 508 (567)
T PLN02479 429 NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKS 508 (567)
T ss_pred CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccccc
Confidence 689999999999999999997 8999999999999999999999988887888899988775532
Q ss_pred ---CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 69 ---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 69 ---~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
...+++.++++.+|++++.|+. +.+ +.+|+|++||++|+.|++.+..
T Consensus 509 ~~~~~~~~l~~~~~~~l~~~~~P~~-~~~---~~iP~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 509 DEAALAEDIMKFCRERLPAYWVPKS-VVF---GPLPKTATGKIQKHVLRAKAKE 558 (567)
T ss_pred chhhhHHHHHHHHHhhcccccCCce-EEe---ccCCCCCccCeeHHHHHHHHHh
Confidence 2346889999999999999994 655 5699999999999999887654
No 99
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.80 E-value=5.1e-19 Score=144.09 Aligned_cols=110 Identities=20% Similarity=0.289 Sum_probs=94.1
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeee----cCCCC--CeeEEEEEe
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIP----HDVFG--ELPAAVVVP 63 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~----~~~~~--~~~~~~v~~ 63 (126)
+++||+|||+|+++++|+++++ ++.+||+++.++|+|.+++++... +...+ ..+++++++
T Consensus 835 ~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~ 914 (1296)
T PRK10252 835 GERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVS 914 (1296)
T ss_pred CCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEc
Confidence 4569999999999999999997 999999999999999999877653 11112 468888887
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 64 KPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 64 ~~~~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
..+...+..++++++++.|+.|++|.. ++. ++.+|+|++||++|++|.+.
T Consensus 915 ~~~~~~~~~~l~~~l~~~Lp~~~~P~~-~~~--~~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 915 QSGLPLDTSALQAQLRERLPPHMVPVV-LLQ--LDQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred CCCCCCCHHHHHHHHHhhCchhcCCcE-EEE--ecCCCCCCCcChhHHhcCCC
Confidence 766566788999999999999999995 888 89999999999999999763
No 100
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.80 E-value=5.6e-19 Score=133.07 Aligned_cols=107 Identities=32% Similarity=0.553 Sum_probs=96.8
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-C
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-V 69 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 69 (126)
++||+|||+++++++|++++. +|.+||+.+.++++|.++++++++++..++.+.+++++.++.. .
T Consensus 420 ~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 499 (541)
T TIGR03205 420 GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPF 499 (541)
T ss_pred cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcC
Confidence 579999999999999999986 9999999999999999999999998888888888888876533 5
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
+.+++.+++++.|+++++|.. +.+ ++++|+|++||++|++|+
T Consensus 500 ~~~~l~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 500 SLDELRAFLAGKLGKHELPVA-VEF--VDELPRTPVGKLSRHELR 541 (541)
T ss_pred CHHHHHHHHHhhcccccCCcE-EEE--eccCCCCcccceeHhhcC
Confidence 678999999999999999996 999 899999999999999873
No 101
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.78 E-value=1.9e-18 Score=129.20 Aligned_cols=109 Identities=33% Similarity=0.501 Sum_probs=95.8
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC--
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-- 68 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 68 (126)
+|||+|||+++++++|++++. +|.+||+.+.++++|.++++++..+...+..+.+++++.+...
T Consensus 383 ~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 462 (508)
T TIGR02262 383 GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID 462 (508)
T ss_pred cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccc
Confidence 689999999999999999886 8999999999999999999999888777777888887765532
Q ss_pred -CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 69 -VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 69 -~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
...+++.++++..+++++.|.. +.. ++++|+|++||++|+.|+++
T Consensus 463 ~~~~~~i~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 463 TALETELKEHVKDRLAPYKYPRW-IVF--VDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred cccHHHHHHHHHHhcccCCCCce-EEE--ecCCCCCCCCcEehhhccCC
Confidence 3357899999999999999995 888 89999999999999998764
No 102
>PRK12467 peptide synthase; Provisional
Probab=99.78 E-value=8.8e-19 Score=153.21 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=96.0
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
+++||+|||+|+++++|+++++ +|.+||+++.++|+|.+|++++.. ...++.+++++++......
T Consensus 1952 ~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~ 2030 (3956)
T PRK12467 1952 GSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLV 2030 (3956)
T ss_pred CccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccc
Confidence 4579999999999999999997 999999999999999999999886 4456788888887654221
Q ss_pred --------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 70 --------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 70 --------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
...++++++++.|+.||+|.. +++ ++.+|+|++||++|++|.+....
T Consensus 2031 ~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~-~~~--l~~lP~t~~GKidr~~L~~~~~~ 2085 (3956)
T PRK12467 2031 DDDEAQVALRAILKNHLKASLPEYMVPAH-LVF--LARMPLTPNGKLDRKALPAPDAS 2085 (3956)
T ss_pred cccccccccHHHHHHHHHhhCchhhCchh-hhh--hhcCCCCCCCCcchhhCCCCccc
Confidence 346899999999999999996 888 89999999999999999875443
No 103
>PRK05691 peptide synthase; Validated
Probab=99.77 E-value=5.1e-18 Score=149.24 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=96.4
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
+.+||+|||+|+++++|+++++ +|.+||+++.++|+|.+|+++...+. .+..++++++...+...
T Consensus 1503 ~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~ 1581 (4334)
T PRK05691 1503 GARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEA 1581 (4334)
T ss_pred CceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCC
Confidence 3569999999999999999997 99999999999999999999865443 45788888887766666
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
..+++++++++.|+.||+|.. ++. ++.+|+|++||++|++|.+.
T Consensus 1582 ~~~~l~~~l~~~Lp~y~vP~~-~~~--~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1582 EAERLKAALAAELPEYMVPAQ-LIR--LDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred CHHHHHHHHHHhCccccCCcE-EEE--ccccCCCCCCCcChhhcCcc
Confidence 778999999999999999995 888 99999999999999999754
No 104
>PRK05691 peptide synthase; Validated
Probab=99.76 E-value=4.7e-18 Score=149.48 Aligned_cols=110 Identities=25% Similarity=0.331 Sum_probs=93.7
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC---
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN--- 66 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--- 66 (126)
+++||+|||+|+++++|+++++ +|.+||+++.++|+|.+|++++... ..++.++++++....
T Consensus 2566 ~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~-~~~~~lva~vv~~~~~~~ 2644 (4334)
T PRK05691 2566 GGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDT-PSGKQLAGYLVSAVAGQD 2644 (4334)
T ss_pred CCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeC-CCCcEEEEEEEecccccc
Confidence 4579999999999999999997 9999999999999999999998744 456778888876432
Q ss_pred ---CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975 67 ---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK 117 (126)
Q Consensus 67 ---~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~ 117 (126)
.....+.+++++++.|+.||+|.. +++ ++.+|+|++||++|++|.+..
T Consensus 2645 ~~~~~~~~~~l~~~l~~~Lp~ymvP~~-~~~--v~~lP~t~~GKidr~~L~~~~ 2695 (4334)
T PRK05691 2645 DEAQAALREALKAHLKQQLPDYMVPAH-LIL--LDSLPLTANGKLDRRALPAPD 2695 (4334)
T ss_pred cccccccHHHHHHHHHhhCccccCChh-hee--ecccCCCCCCcccHHhhcCcc
Confidence 122347899999999999999996 888 899999999999999997654
No 105
>PLN02614 long-chain acyl-CoA synthetase
Probab=99.75 E-value=2.7e-18 Score=132.68 Aligned_cols=117 Identities=26% Similarity=0.302 Sum_probs=90.7
Q ss_pred CCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC--
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-- 67 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 67 (126)
+|||+|||+|++|++|+|+|+ +|.+||+++.+||.|.+|+|++.+... .++|++++....
T Consensus 495 dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~ 571 (666)
T PLN02614 495 DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILE 571 (666)
T ss_pred cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHH
Confidence 799999999999999999997 899999999999999999999886432 488888876421
Q ss_pred --------CCCH----------HHHHHHH-----HhhcCCCCCCCccEEEe----ecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 --------SVTA----------EEVKQFV-----EDQVNPSKRLSGGVFLC----SFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 --------~~~~----------~~~~~~l-----~~~l~~~~~p~~~~~~~----~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+. +.+.+.+ ++.|+.|+++++ ++++ ++++-.+||++|++|..+.+.|...
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~-~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~ 650 (666)
T PLN02614 572 RWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKA-IHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSV 650 (666)
T ss_pred HHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeE-EEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHH
Confidence 0010 1222222 345999999997 6663 2334459999999999999999988
Q ss_pred ccCcC
Q psy4975 121 HDDVT 125 (126)
Q Consensus 121 ~~~~~ 125 (126)
++..|
T Consensus 651 i~~ly 655 (666)
T PLN02614 651 IDEMY 655 (666)
T ss_pred HHHHH
Confidence 77655
No 106
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.75 E-value=5.5e-18 Score=130.83 Aligned_cols=117 Identities=26% Similarity=0.319 Sum_probs=90.7
Q ss_pred CCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC---
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN--- 66 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--- 66 (126)
+|||+|||+|++|++|+|+|. +|.+||+++.+||.|.+|+|++.+. ++.++|++++...
T Consensus 492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~ 568 (660)
T PLN02861 492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALE 568 (660)
T ss_pred ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHH
Confidence 799999999999999999997 8999999999999999999998763 3568888887532
Q ss_pred -------CCCCH----------HHHHHHHHh-----hcCCCCCCCccEEE----eecCcccCCCCCccchHHHHHHHhcc
Q psy4975 67 -------SSVTA----------EEVKQFVED-----QVNPSKRLSGGVFL----CSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 67 -------~~~~~----------~~~~~~l~~-----~l~~~~~p~~~~~~----~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
...+. ..+.+.+++ .++.+++++. +.+ +++++-.+|+++|++|+.+.+.|...
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~-~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~ 647 (660)
T PLN02861 569 DWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKA-IHLEPNPFDIERDLITPTFKLKRPQLLKYYKDC 647 (660)
T ss_pred HHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeE-EEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHH
Confidence 00111 223344443 3888999986 555 22333389999999999999999988
Q ss_pred ccCcC
Q psy4975 121 HDDVT 125 (126)
Q Consensus 121 ~~~~~ 125 (126)
++..|
T Consensus 648 I~~lY 652 (660)
T PLN02861 648 IDQLY 652 (660)
T ss_pred HHHHH
Confidence 87655
No 107
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.75 E-value=1.3e-17 Score=126.47 Aligned_cols=112 Identities=29% Similarity=0.407 Sum_probs=87.1
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|+++ +|+|++. +|.+||+++.+++.+. |++++++++ .++.+.++++++++...+
T Consensus 436 ~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~ 512 (578)
T PRK05850 436 GPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSD 512 (578)
T ss_pred CCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcc
Confidence 5799999999998 8999997 9999999999999854 777788876 677888888887653322
Q ss_pred ------HHHHHHHHHhhcCCC--CCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 71 ------AEEVKQFVEDQVNPS--KRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 71 ------~~~~~~~l~~~l~~~--~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
...+++.+.+.++.. ..|.. +.++..+.+|+|++||++|++|++++...
T Consensus 513 ~~~~~~~~~l~~~v~~~l~~~~~~~~~~-~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 513 EEAMDRLRTVKREVTSAISKSHGLSVAD-LVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 235666666655432 34664 66744568999999999999999998753
No 108
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=99.75 E-value=1.9e-18 Score=132.31 Aligned_cols=118 Identities=17% Similarity=0.308 Sum_probs=93.3
Q ss_pred CCCCCceecCceEEE----cCCCcEEEe-----------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEE
Q psy4975 2 LDDDGWLHTGDLAYR----LPDGTHFII-----------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 60 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~----~~~g~l~~~-----------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ 60 (126)
|+++|||+|||+|++ |++|+++|. ++.++|..+..||.|.+|+|++.+++. +.++
T Consensus 436 ~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~----~~a~ 511 (614)
T PRK08180 436 FDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDE----IGLL 511 (614)
T ss_pred cccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCc----eEEE
Confidence 456899999999999 467899886 378899999999999999999998765 6688
Q ss_pred EEeCCCC---------------CCCHHHHHHHHHhhcCCCC--------CCCccEEEeecCcccCC------CCCccchH
Q psy4975 61 VVPKPNS---------------SVTAEEVKQFVEDQVNPSK--------RLSGGVFLCSFDFIPRT------MSGKVKRK 111 (126)
Q Consensus 61 v~~~~~~---------------~~~~~~~~~~l~~~l~~~~--------~p~~~~~~~~~~~lp~t------~~GKv~r~ 111 (126)
|+++++. ..+.+++++++...|+.++ .|++ +.+ ++.+|+| ++||+.|.
T Consensus 512 V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~-~~~--~~~~p~~~~gk~t~~~~~~R~ 588 (614)
T PRK08180 512 VFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVAR-ALL--LDEPPSLDAGEITDKGYINQR 588 (614)
T ss_pred EEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeE-EEE--ecCCCCCccCccCccccccHH
Confidence 8876441 1234568888888777766 8996 888 7777765 56688899
Q ss_pred HHHHHHhccccCcCC
Q psy4975 112 DLNETKVMRHDDVTR 126 (126)
Q Consensus 112 ~l~~~~~~~~~~~~~ 126 (126)
++.+.|+..++..|.
T Consensus 589 ~~~~~y~~~i~~lY~ 603 (614)
T PRK08180 589 AVLARRAALVEALYA 603 (614)
T ss_pred HHHHHhHHHHHHHhC
Confidence 999999998887663
No 109
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.73 E-value=2.7e-17 Score=123.96 Aligned_cols=115 Identities=25% Similarity=0.347 Sum_probs=85.9
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeec--CCCCCeeEEEEEeCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPH--DVFGELPAAVVVPKPN 66 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~ 66 (126)
+.+|||+|||+++++++|++++. ++.+||+.+.++|+|.+++++++.. ...++...+++.....
T Consensus 411 ~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~ 490 (545)
T PRK07768 411 DADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAF 490 (545)
T ss_pred cCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEeccc
Confidence 45789999999999999999987 8999999999999999977776643 3334444444444322
Q ss_pred C-CCCHHHHHHHHHhhcCCC--CCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 67 S-SVTAEEVKQFVEDQVNPS--KRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 67 ~-~~~~~~~~~~l~~~l~~~--~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
. .....++.+.+++.+.+. ..|.. +.+++.+.+|+|++||++|+.|++++.
T Consensus 491 ~~~~~~~~l~~~~~~~l~~~~~~~p~~-v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 491 EDPAEVRRIRHQVAHEVVAEVGVRPRN-VVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCccE-EEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 1 122345677777766544 57885 777445599999999999999999875
No 110
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.73 E-value=2.2e-17 Score=128.22 Aligned_cols=116 Identities=23% Similarity=0.274 Sum_probs=89.2
Q ss_pred CceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC---
Q psy4975 6 GWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS--- 67 (126)
Q Consensus 6 g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 67 (126)
|||+|||+|++|++|+|+|+ +|.+||+++.+||.|.++++++.+.. ..++|++++....
T Consensus 535 ~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~ 611 (696)
T PLN02387 535 RWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVVPSQQALEK 611 (696)
T ss_pred ceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEEeCHHHHHH
Confidence 49999999999999999997 89999999999999999999987533 3578888876421
Q ss_pred -------C-CC----------HHHHHHHH-----HhhcCCCCCCCccEEEee----cCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 -------S-VT----------AEEVKQFV-----EDQVNPSKRLSGGVFLCS----FDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 -------~-~~----------~~~~~~~l-----~~~l~~~~~p~~~~~~~~----~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. .+ .+.+.+.+ +..|++|++|++ +++++ +++--+||++|+.|+.+.+.|...
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~-i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~ 690 (696)
T PLN02387 612 WAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAK-IKLLPEPWTPESGLVTAALKLKREQIRKKFKDD 690 (696)
T ss_pred HHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeE-EEEECCCCCCCCCcCChhhhhhhHHHHHHHHHH
Confidence 0 01 11222222 335999999997 77732 334458999999999999999998
Q ss_pred ccCcC
Q psy4975 121 HDDVT 125 (126)
Q Consensus 121 ~~~~~ 125 (126)
++..|
T Consensus 691 i~~ly 695 (696)
T PLN02387 691 LKKLY 695 (696)
T ss_pred HHHHh
Confidence 87766
No 111
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=99.72 E-value=1.8e-17 Score=128.08 Aligned_cols=118 Identities=31% Similarity=0.452 Sum_probs=90.4
Q ss_pred CCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC-
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS- 67 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~- 67 (126)
.+|||+|||+|++|++|+|+|+ +|.+||+.+.++|.|.+|+|++.. .+..++|+++++...
T Consensus 491 ~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~ 567 (660)
T PLN02430 491 KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENT 567 (660)
T ss_pred hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHH
Confidence 4899999999999999999997 899999999999999999999842 345788999886421
Q ss_pred ---------CCC------HHHHH----HHH-----HhhcCCCCCCCccEEEe----ecCcccCCCCCccchHHHHHHHhc
Q psy4975 68 ---------SVT------AEEVK----QFV-----EDQVNPSKRLSGGVFLC----SFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 68 ---------~~~------~~~~~----~~l-----~~~l~~~~~p~~~~~~~----~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
... ..+++ +.+ ++.|++|+++++ +++. ++++-.+|+++|++|+.+.+.|..
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~-~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02430 568 NKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKG-VILETKPFDVERDLVTATLKKRRNNLLKYYQV 646 (660)
T ss_pred HHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeE-EEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence 001 11222 222 234999999996 6662 344556999999999999999998
Q ss_pred cccCcC
Q psy4975 120 RHDDVT 125 (126)
Q Consensus 120 ~~~~~~ 125 (126)
.++..|
T Consensus 647 ~i~~ly 652 (660)
T PLN02430 647 EIDEMY 652 (660)
T ss_pred HHHHHH
Confidence 877654
No 112
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.71 E-value=1.9e-16 Score=115.67 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=83.0
Q ss_pred CceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC-
Q psy4975 6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT- 70 (126)
Q Consensus 6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 70 (126)
.|++|||+++++++|+|+|. +|.+||+++.++|+|.+|++. ..++.+.+++++.++....
T Consensus 275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~-----~~g~~~~a~vv~~~~~~~~~ 349 (386)
T TIGR02372 275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVR-----LDGRRLKAFIVVAEDADEAE 349 (386)
T ss_pred ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEE-----cCCceEEEEEEECCCCChHH
Confidence 47999999999999999997 999999999999999999885 2356788888887553332
Q ss_pred -HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccc
Q psy4975 71 -AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109 (126)
Q Consensus 71 -~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~ 109 (126)
.+++.+++.+++++++.|.. +.+ ++.+|+|++||++
T Consensus 350 ~~~~l~~~~~~~L~~~~~P~~-i~~--~~~lP~t~~GKi~ 386 (386)
T TIGR02372 350 LEIELRATAARHLPAPARPDR-FRF--GTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHhCCCCCCCcE-EEE--cccCCCCCCCCcC
Confidence 46889999999999999995 999 9999999999985
No 113
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=99.69 E-value=9.1e-17 Score=124.80 Aligned_cols=120 Identities=23% Similarity=0.261 Sum_probs=87.4
Q ss_pred CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceE--EEEeeecCCCCCeeEEEEEeC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDV--AVIGIPHDVFGELPAAVVVPK 64 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~--~~~~~~~~~~~~~~~~~v~~~ 64 (126)
|+.+|||+|||+|++|++|+|+|+ +|.+||+++.++|.|.++ +++..++ ...+++++++.
T Consensus 532 f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~ 608 (700)
T PTZ00216 532 LDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTD 608 (700)
T ss_pred ccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecC
Confidence 567899999999999999999997 899999999999999973 3433332 24678888775
Q ss_pred CCC----------CCC------H----HHHHHHHH-----hhcCCCCCCCccEEEee----cCcccCCCCCccchHHHHH
Q psy4975 65 PNS----------SVT------A----EEVKQFVE-----DQVNPSKRLSGGVFLCS----FDFIPRTMSGKVKRKDLNE 115 (126)
Q Consensus 65 ~~~----------~~~------~----~~~~~~l~-----~~l~~~~~p~~~~~~~~----~~~lp~t~~GKv~r~~l~~ 115 (126)
... ... . +.+.+.+. ..+.+|+.++. +++++ +++-.+|+++|++|+.+.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~-~~~~~~~f~~~~g~lT~t~K~~R~~i~~ 687 (700)
T PTZ00216 609 EAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRH-VRVLSDEWTPENGVLTAAMKLKRRVIDE 687 (700)
T ss_pred HHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeE-EEEECCCCCCCCCCCChhhccchHHHHH
Confidence 310 001 1 12222222 24788999996 66632 3455589999999999999
Q ss_pred HHhccccCcC
Q psy4975 116 TKVMRHDDVT 125 (126)
Q Consensus 116 ~~~~~~~~~~ 125 (126)
.|...++..|
T Consensus 688 ~y~~~i~~ly 697 (700)
T PTZ00216 688 RYADLIKELF 697 (700)
T ss_pred HHHHHHHHHh
Confidence 9998887765
No 114
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=99.68 E-value=2.2e-16 Score=89.98 Aligned_cols=72 Identities=39% Similarity=0.653 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhhcCCCCCCCccEEEeecCc-ccCCCCCc
Q psy4975 29 ELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF-IPRTMSGK 107 (126)
Q Consensus 29 ~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~-lp~t~~GK 107 (126)
|||+++.++|+|.+|++++.+++.+|+.+++++++ +.++++++++++|++|++|+. +.++.+++ ||+|++||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~-~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRR-IRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SE-EEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeE-EEEccccCcCCCCCCCC
Confidence 79999999999999999999999999999999988 448999999999999999963 55544677 99999998
No 115
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=99.66 E-value=4.8e-16 Score=121.50 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=86.0
Q ss_pred CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 66 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 66 (126)
|+.||||+|||+|++|++|+|+|+ +|.+||+++.++|.|.+|+|++.... ..++|+|++...
T Consensus 566 f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~ 642 (746)
T PTZ00342 566 FTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKY 642 (746)
T ss_pred cCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCHH
Confidence 567999999999999999999997 89999999999999999999986322 258888887531
Q ss_pred ----------------CC-CCH-----------HHHHH----H---H--HhhcCCCCCCCccEEEe----ecCcccCCCC
Q psy4975 67 ----------------SS-VTA-----------EEVKQ----F---V--EDQVNPSKRLSGGVFLC----SFDFIPRTMS 105 (126)
Q Consensus 67 ----------------~~-~~~-----------~~~~~----~---l--~~~l~~~~~p~~~~~~~----~~~~lp~t~~ 105 (126)
.. ... ..+.+ . + +..|++|+++++ ++++ +++. -+||+
T Consensus 643 ~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~-~~l~~~~~t~~~-~lTpt 720 (746)
T PTZ00342 643 LLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIIND-IYLTSKVWDTNN-YLTPT 720 (746)
T ss_pred HHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeee-EEEecCCCCCCC-ccChh
Confidence 00 010 01111 1 2 225999999997 6663 2333 49999
Q ss_pred CccchHHHHHHHhccc
Q psy4975 106 GKVKRKDLNETKVMRH 121 (126)
Q Consensus 106 GKv~r~~l~~~~~~~~ 121 (126)
.|+.|..+.+.|...+
T Consensus 721 ~KlkR~~v~~~y~~~i 736 (746)
T PTZ00342 721 FKVKRFYVFKDYAFFI 736 (746)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 9999999999888443
No 116
>PRK12582 acyl-CoA synthetase; Provisional
Probab=99.65 E-value=2.1e-16 Score=121.24 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=83.7
Q ss_pred CCCCCceecCceEEE-c---CCCcEEEe---------------ChHHH--HHHHhcCCCcceEEEEeeecCCCCCeeEEE
Q psy4975 2 LDDDGWLHTGDLAYR-L---PDGTHFII---------------SPCEL--ESIFRQHPDVEDVAVIGIPHDVFGELPAAV 60 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~-~---~~g~l~~~---------------~~~~i--E~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ 60 (126)
|+++|||+|||+|++ | ++|+++++ +|.+| |.++.+||.|.+|+|++++++.. .++
T Consensus 448 f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~----g~l 523 (624)
T PRK12582 448 FDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFI----GLL 523 (624)
T ss_pred cCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcE----EEE
Confidence 557899999999998 4 46899886 66677 56788999999999999987763 344
Q ss_pred EEeCC----------CC----CCCHHHHHHHHHhhc-------CCCC-CCCccEEEeecCcc------cCCCCCccchHH
Q psy4975 61 VVPKP----------NS----SVTAEEVKQFVEDQV-------NPSK-RLSGGVFLCSFDFI------PRTMSGKVKRKD 112 (126)
Q Consensus 61 v~~~~----------~~----~~~~~~~~~~l~~~l-------~~~~-~p~~~~~~~~~~~l------p~t~~GKv~r~~ 112 (126)
|++.. +. ..+.+++.++++..+ +.+. +|++ +.+ ++.+ ++|++||+.|+.
T Consensus 524 v~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~~t~~~~~~R~~ 600 (624)
T PRK12582 524 AWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIAR-ALL--MTEPPSIDAGEITDKGYINQRA 600 (624)
T ss_pred EecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEE-EEE--eCCCCCccCCcCCccccccHHH
Confidence 33321 10 012245555555554 4444 9996 777 4544 477888999999
Q ss_pred HHHHHhccccCcC
Q psy4975 113 LNETKVMRHDDVT 125 (126)
Q Consensus 113 l~~~~~~~~~~~~ 125 (126)
+.+.|...+++.|
T Consensus 601 ~~~~y~~~i~~ly 613 (624)
T PRK12582 601 VLERRAALVERLY 613 (624)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888766
No 117
>KOG1256|consensus
Probab=99.59 E-value=3.9e-15 Score=113.38 Aligned_cols=121 Identities=30% Similarity=0.416 Sum_probs=91.2
Q ss_pred CCCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCC
Q psy4975 1 MLDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 65 (126)
Q Consensus 1 ~~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 65 (126)
+||+|||+||||+|+++++|.|.|+ .|+.||++..+.+.|.++++++-+... .++++|++..
T Consensus 522 ~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~---~LvaiVvpd~ 598 (691)
T KOG1256|consen 522 AIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRS---FLVAIVVPDP 598 (691)
T ss_pred hhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchh---cEEEEEecCh
Confidence 4799999999999999999999998 899999999999999999998765444 6999999865
Q ss_pred CCCCCH--------------------HHHHHHHHh-----hcCCCCCCCccEEE----eecCcccCCCCCccchHHHHHH
Q psy4975 66 NSSVTA--------------------EEVKQFVED-----QVNPSKRLSGGVFL----CSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 66 ~~~~~~--------------------~~~~~~l~~-----~l~~~~~p~~~~~~----~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
...... +.+...+.+ .+..+..-+. +.+ .++++--+||+.|+.|..+.+.
T Consensus 599 e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~-v~l~~~~FsienglltPTlK~KR~~l~~~ 677 (691)
T KOG1256|consen 599 EVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKK-VHLLPDPFSIENGLLTPTLKIKRPQLLKY 677 (691)
T ss_pred hhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEee-EEEecccccccCCccchhhhhhhHHHHHH
Confidence 421110 111111111 2566666664 555 2355556899999999999999
Q ss_pred HhccccCcC
Q psy4975 117 KVMRHDDVT 125 (126)
Q Consensus 117 ~~~~~~~~~ 125 (126)
|...+++.|
T Consensus 678 yk~~Id~mY 686 (691)
T KOG1256|consen 678 YKKQIDELY 686 (691)
T ss_pred HHHHHHHHH
Confidence 998887665
No 118
>KOG1179|consensus
Probab=99.55 E-value=1.8e-14 Score=107.30 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=102.6
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCC-CCCeeEEEEEeCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDV-FGELPAAVVVPKPNSS 68 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~ 68 (126)
+|-||.|||+-.+|+.|++||. +..|+|..+.....++|+.|+|+.-|. .|...+|.+++.+...
T Consensus 486 GD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~ 565 (649)
T KOG1179|consen 486 GDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTE 565 (649)
T ss_pred CcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCccc
Confidence 5779999999999999999998 999999999999999999999998876 5577888888888889
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK 117 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~ 117 (126)
.+...+..+++..||+|++|+ ++.+ .+++++|.+-|..+..|.+..
T Consensus 566 ~d~~~l~~~l~~~LP~YA~P~-FlRl--~~~i~~TgTFKl~K~~L~~eg 611 (649)
T KOG1179|consen 566 KDLEKLYQHLRENLPSYARPR-FLRL--QDEIEKTGTFKLQKTELQKEG 611 (649)
T ss_pred chHHHHHHHHHhhCccccchH-HHHH--HhhhhcccchhhHHHHHHHcc
Confidence 999999999999999999999 5999 999999999999999988754
No 119
>KOG1180|consensus
Probab=99.47 E-value=1.1e-13 Score=102.95 Aligned_cols=117 Identities=26% Similarity=0.419 Sum_probs=92.1
Q ss_pred CC--ceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 5 DG--WLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 5 ~g--~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
+| ||.|||+|++.++|.|.|+ +++.+|.++..+|.|.+.++++.+... .++++|+++...
T Consensus 512 ~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s---~~VaiVVPn~~~ 588 (678)
T KOG1180|consen 512 DGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKS---KPVAIVVPNQKH 588 (678)
T ss_pred CCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccc---eeEEEEcCCchH
Confidence 56 9999999999999999998 999999999999999999999776655 799999998642
Q ss_pred C--------CCH-----------------HHHHHHH-HhhcCCCCCCCccEEEeecCccc----CCCCCccchHHHHHHH
Q psy4975 68 S--------VTA-----------------EEVKQFV-EDQVNPSKRLSGGVFLCSFDFIP----RTMSGKVKRKDLNETK 117 (126)
Q Consensus 68 ~--------~~~-----------------~~~~~~l-~~~l~~~~~p~~~~~~~~~~~lp----~t~~GKv~r~~l~~~~ 117 (126)
. ... .++.+.- .+.|..+++|.. +++.+.+.-| .|..-|+.|+.+...|
T Consensus 589 lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~-I~l~~e~WTPenGlvT~A~KLKRk~I~~~~ 667 (678)
T KOG1180|consen 589 LTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAK-IVLSPEPWTPENGLVTAALKLKRKEILAAY 667 (678)
T ss_pred HHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccce-eEecCCCcCCCccccHHHHHhhHHHHHHHH
Confidence 1 111 1222222 224899999996 8885555555 5678899999999999
Q ss_pred hccccCcC
Q psy4975 118 VMRHDDVT 125 (126)
Q Consensus 118 ~~~~~~~~ 125 (126)
..+++..|
T Consensus 668 k~ei~~~Y 675 (678)
T KOG1180|consen 668 KKEIDRLY 675 (678)
T ss_pred HHHHHHHh
Confidence 98887765
No 120
>KOG1178|consensus
Probab=99.45 E-value=3.1e-13 Score=107.30 Aligned_cols=113 Identities=23% Similarity=0.304 Sum_probs=99.8
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+..|+|||.|+.-.+|.+.+. .+.+|+..+..+|.|.++++....++..++.+.++++.......
T Consensus 452 ~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~ 531 (1032)
T KOG1178|consen 452 KARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKS 531 (1032)
T ss_pred hhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCc
Confidence 3679999999998889988886 89999999999999999999999998889999999988766433
Q ss_pred -CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 -TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 -~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
....++.++.+.|+.|++|.. ++. ++.+|+|++||+|+++|.. +.+.
T Consensus 532 ~~~~~i~~~l~~~La~y~vPs~-~V~--l~~vPl~~~GKvDkkaL~~-~~s~ 579 (1032)
T KOG1178|consen 532 VLIRDIRNYLKKELASYMLPSL-VVP--LAKVPLNPNGKVDKKALLE-YNSK 579 (1032)
T ss_pred hhHHHHHHhhcccccceecceE-EEE--hhhCCcCCCCCcChhhhhh-hhhh
Confidence 357899999999999999995 888 9999999999999999998 4443
No 121
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=99.43 E-value=4.3e-13 Score=102.44 Aligned_cols=119 Identities=23% Similarity=0.336 Sum_probs=86.1
Q ss_pred CCCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCC
Q psy4975 1 MLDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 65 (126)
Q Consensus 1 ~~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 65 (126)
+|++||||+|||+|.+|++|+|+++ .|+.||+.+.++|.|++.++++ .+.. .+.|++++..
T Consensus 444 af~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~---~~~AlIvp~~ 519 (613)
T COG1022 444 AFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKK---FLVALIVPDF 519 (613)
T ss_pred hccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCc---ceEEEEeCCH
Confidence 4789999999999999999999998 9999999999999999999998 3333 5888888864
Q ss_pred CCC------------CCH------HHHHHH----HHh---hcCCCCCCCccEEE----eecCcccCCCCCccchHHHHHH
Q psy4975 66 NSS------------VTA------EEVKQF----VED---QVNPSKRLSGGVFL----CSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 66 ~~~------------~~~------~~~~~~----l~~---~l~~~~~p~~~~~~----~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
+.. .+. .++.+. +.. .+..++.... +++ .+.+.-..|++-|+.|..+.+.
T Consensus 520 ~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~-~~~~~~~~t~~~~~~t~t~klkR~~i~~~ 598 (613)
T COG1022 520 DALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKK-FVLLPKEFTPENGELTPTLKLKRHVILDR 598 (613)
T ss_pred HHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhhe-eeecccccccccCccccchhhhHHHHHHh
Confidence 310 111 122222 111 2455566654 443 1234455899999999999999
Q ss_pred HhccccCc
Q psy4975 117 KVMRHDDV 124 (126)
Q Consensus 117 ~~~~~~~~ 124 (126)
+...++..
T Consensus 599 ~~~~i~~~ 606 (613)
T COG1022 599 YKDEIEAV 606 (613)
T ss_pred hhhHHHHH
Confidence 88776644
No 122
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.18 E-value=1.8e-10 Score=84.94 Aligned_cols=102 Identities=24% Similarity=0.261 Sum_probs=68.1
Q ss_pred CCceecCceEEEcCC-C-----cEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeC
Q psy4975 5 DGWLHTGDLAYRLPD-G-----THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 64 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~-g-----~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 64 (126)
.+||+|||+++++++ | .+++. +|.+||.++.++|+|...+.+........+.+.+.++..
T Consensus 288 ~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~ 367 (422)
T TIGR02155 288 VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELK 367 (422)
T ss_pred eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEe
Confidence 579999999999775 4 23333 999999999999999855555555544445566666665
Q ss_pred CCCC-----CC----HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchH
Q psy4975 65 PNSS-----VT----AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111 (126)
Q Consensus 65 ~~~~-----~~----~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~ 111 (126)
++.. .+ .+++.+.+++.+..+ . .+.++.+++||+|+ ||+.|.
T Consensus 368 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~-~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 368 PESYTLRLHEQASLLAGEIQHTIKQEVGVS---M-DVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred cCcccccchHHHHHHHHHHHHHHHhccCcE---E-EEEEECCCCccCCC-CCceEE
Confidence 4321 11 244555555555443 2 26665578999988 999863
No 123
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=98.53 E-value=9.8e-08 Score=69.46 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=36.7
Q ss_pred ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEE
Q psy4975 7 WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAV 45 (126)
Q Consensus 7 ~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~ 45 (126)
||+|||++++|++|++++. +|.+||+.+..++.|.+|++
T Consensus 356 ~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 356 LYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 9999999999999999987 89999999999999998874
No 124
>PTZ00297 pantothenate kinase; Provisional
Probab=98.52 E-value=3.6e-07 Score=76.21 Aligned_cols=95 Identities=22% Similarity=0.189 Sum_probs=67.1
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-------------------CCHHH--------HHHHH
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-------------------VTAEE--------VKQFV 78 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~~--------~~~~l 78 (126)
+|+.||+.+.++|.|.+++|++...+. ++|+|+++.... ....+ +.+.+
T Consensus 871 aP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i 946 (1452)
T PTZ00297 871 IAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADF 946 (1452)
T ss_pred cHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHH
Confidence 999999999999999999999876554 888888763211 01122 22222
Q ss_pred ---Hh--hcCCCCCCCccEEEe----ecCcccCCCCCccchHHHHHHHhccccCcC
Q psy4975 79 ---ED--QVNPSKRLSGGVFLC----SFDFIPRTMSGKVKRKDLNETKVMRHDDVT 125 (126)
Q Consensus 79 ---~~--~l~~~~~p~~~~~~~----~~~~lp~t~~GKv~r~~l~~~~~~~~~~~~ 125 (126)
.+ .+..+++++. +.++ ++++--+||+.|+.|..+.+.|...++..|
T Consensus 947 ~~V~~~n~l~~~ei~k~-~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY 1001 (1452)
T PTZ00297 947 ACIAKENGLHPSNVPEY-VHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFY 1001 (1452)
T ss_pred HHHHHHhCcCccceeeE-EEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHh
Confidence 11 1566778874 5552 344446999999999999999998877655
No 125
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=98.07 E-value=1.1e-05 Score=48.04 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=49.9
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC---CHHHHHHHHHhhcCCCCCCCccEEEeecCcccC
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV---TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPR 102 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~ 102 (126)
+|+.||+++.++|++...+-+.+......+.+...+..+++... ..+++.+.+.+.+.....-+..+.+++..+||+
T Consensus 5 fP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~gtLpr 84 (96)
T PF14535_consen 5 FPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPGTLPR 84 (96)
T ss_dssp -HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT-S--
T ss_pred CHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCCCccC
Confidence 79999999999999997676666665556777777888775432 234444444444322222221377777889999
Q ss_pred CCCCccch
Q psy4975 103 TMSGKVKR 110 (126)
Q Consensus 103 t~~GKv~r 110 (126)
+ .||..|
T Consensus 85 ~-~~K~~R 91 (96)
T PF14535_consen 85 S-EGKAKR 91 (96)
T ss_dssp --SSSS-S
T ss_pred C-CCcceE
Confidence 8 588776
No 126
>KOG3628|consensus
Probab=97.83 E-value=0.00018 Score=58.42 Aligned_cols=110 Identities=15% Similarity=0.273 Sum_probs=76.5
Q ss_pred CCCCceecCceEEEc------CCC----cEEEe--------------ChHHHHHHHhc-CCCcceEEEEeeecCCCCCee
Q psy4975 3 DDDGWLHTGDLAYRL------PDG----THFII--------------SPCELESIFRQ-HPDVEDVAVIGIPHDVFGELP 57 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~------~~g----~l~~~--------------~~~~iE~~l~~-~~~v~~~~~~~~~~~~~~~~~ 57 (126)
++.+|-+|||+|++. .+| -||.+ +|.+||.-+.. |+.|..|+++ .++..+
T Consensus 1216 ~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF-----~~~glv 1290 (1363)
T KOG3628|consen 1216 LGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVF-----QATGLV 1290 (1363)
T ss_pred ccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeE-----eeCCeE
Confidence 467899999999973 222 23443 89999997765 8999999998 444456
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 58 AAVVVPKPNSSVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 58 ~~~v~~~~~~~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
+.++.... ......+.-.+-+ .|..+.+--..+.+++...+|+++.|-.+|..+.+.+.+
T Consensus 1291 VvviE~~g--q~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1291 VVVIECHG--QQELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred EEEEEecC--chhHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence 66665543 2333344444333 366666666556677777999999999999997776654
No 127
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=96.98 E-value=0.015 Score=43.68 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=63.2
Q ss_pred eecCceEEEcCC----CcEEE---------------e----ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeC
Q psy4975 8 LHTGDLAYRLPD----GTHFI---------------I----SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 64 (126)
Q Consensus 8 ~~TGD~~~~~~~----g~l~~---------------~----~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 64 (126)
|+|||++.+..+ |..+- . +|..||..+.+.+.+..-+-+...++...+.+.+-+...
T Consensus 304 YrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~ 383 (438)
T COG1541 304 YRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELE 383 (438)
T ss_pred EEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEec
Confidence 899999998762 22111 0 999999999999999844444444445556677777776
Q ss_pred CCCC--CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccch
Q psy4975 65 PNSS--VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110 (126)
Q Consensus 65 ~~~~--~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r 110 (126)
+... .+..++...+.+.+.....-+..+-++.+..+|+|. ||..|
T Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~-~K~kr 430 (438)
T COG1541 384 NEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTE-GKAKR 430 (438)
T ss_pred CcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceeccc-CceeE
Confidence 5422 222333345555543333333236666688999998 46654
No 128
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=96.79 E-value=0.025 Score=42.51 Aligned_cols=84 Identities=8% Similarity=-0.036 Sum_probs=45.8
Q ss_pred ChHHHHHHHhcC---CCcceEEEEeeecCCCC-CeeEEEEEeCCCCCCCHHHHHHHHHhh----cCC-------CCCCCc
Q psy4975 26 SPCELESIFRQH---PDVEDVAVIGIPHDVFG-ELPAAVVVPKPNSSVTAEEVKQFVEDQ----VNP-------SKRLSG 90 (126)
Q Consensus 26 ~~~~iE~~l~~~---~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~----l~~-------~~~p~~ 90 (126)
+|.+||+++.+. +++...+-+.......+ ..+...+...+....+.+++.+.+.+. ++. ..+.-
T Consensus 341 ~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 419 (445)
T TIGR03335 341 NRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQI- 419 (445)
T ss_pred CHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEE-
Confidence 999999999994 66654443333333222 244444555544333444555444444 222 11112
Q ss_pred cEEEeecCcccCCC-CCccch
Q psy4975 91 GVFLCSFDFIPRTM-SGKVKR 110 (126)
Q Consensus 91 ~~~~~~~~~lp~t~-~GKv~r 110 (126)
.+-++....+|+++ .||..|
T Consensus 420 ~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 420 LVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred EEEEeCCCCccccccCCCcee
Confidence 14445577899983 699876
No 129
>KOG3628|consensus
Probab=93.89 E-value=0.69 Score=38.80 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCceecCceEEEcCCCcEEEe-------------------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEE
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII-------------------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 59 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~-------------------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~ 59 (126)
.-+.+||=+|++- +|.+|++ ..+-++.+.+.-+.|-++.++- .+....
T Consensus 570 ~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~V 642 (1363)
T KOG3628|consen 570 VPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVV 642 (1363)
T ss_pred chhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEE
Confidence 4467999999996 5666665 4455666667778888888875 122333
Q ss_pred EEEeCCC-CCCCHHHHHHHHHhhcCCCCCCCc-cEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 60 VVVPKPN-SSVTAEEVKQFVEDQVNPSKRLSG-GVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 60 ~v~~~~~-~~~~~~~~~~~l~~~l~~~~~p~~-~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
++.-++. .+.+.-+++..+-+.+-.++.-.- -+.+++-+.||+|+-|-+.-.++++.|..
T Consensus 643 v~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 643 VVLESPDATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred EEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence 3332222 344445566666665655555442 13336788999999888999999998875
No 130
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=70.95 E-value=22 Score=23.16 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=34.5
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
-...|++.+.+.++|.++.++...+ .+++.+.+... ......+++.+.+.+..
T Consensus 76 ~a~~i~~~v~~~~~V~~A~vvv~~~-----~a~Vav~~~~~-~~~~~~i~~~V~~~v~~ 128 (177)
T PF09580_consen 76 LADRIANRVKKVPGVEDATVVVTDD-----NAYVAVDLDFN-RFNTKKIKKKVEKAVKS 128 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEEECC-----EEEEEEEeccc-ccchhHHHHHHHHHHHH
Confidence 5678888899999999999985422 25555555422 44555666666665544
No 131
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.13 E-value=4.9 Score=31.42 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=17.9
Q ss_pred CceecCceEEEcCCCcEEEe
Q psy4975 6 GWLHTGDLAYRLPDGTHFII 25 (126)
Q Consensus 6 g~~~TGD~~~~~~~g~l~~~ 25 (126)
++|+|||+++...+|.+.++
T Consensus 596 ~~y~tgD~~r~~~dg~~e~l 615 (642)
T COG1020 596 RLYRTGDLARPLADGALEYL 615 (642)
T ss_pred cCccCCCeeeECCCCeEEEe
Confidence 48999999999999988876
No 132
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=57.13 E-value=12 Score=21.20 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=15.5
Q ss_pred EEEcCCCcEEEe-ChHHHHHHH
Q psy4975 14 AYRLPDGTHFII-SPCELESIF 34 (126)
Q Consensus 14 ~~~~~~g~l~~~-~~~~iE~~l 34 (126)
+++|++|.+|+. +.+++.+.+
T Consensus 41 ~wiDe~G~vYi~~s~eel~~~L 62 (76)
T PF06970_consen 41 GWIDENGNVYIIFSIEELMELL 62 (76)
T ss_pred CcCCCCCCEEEEeeHHHHHHHH
Confidence 357999999998 566666554
No 133
>KOG1556|consensus
Probab=56.31 E-value=4.1 Score=28.60 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=16.6
Q ss_pred CCceecCceEEEcCCCcEEEeChHHHHHHHhcC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFIISPCELESIFRQH 37 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~~~~~iE~~l~~~ 37 (126)
-||||||=.-+..+ -+|.+.+.+.
T Consensus 93 vGWYhTGPkl~~nD---------l~In~l~k~y 116 (309)
T KOG1556|consen 93 VGWYHTGPKLREND---------LDINELLKRY 116 (309)
T ss_pred eeeeccCCccccch---------hhHHHHHhhc
Confidence 38999998766542 5666666653
No 134
>PF15121 TMEM71: TMEM71 protein family
Probab=53.69 E-value=15 Score=23.33 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=18.4
Q ss_pred CCce-ecCceEEEcCCCcEEEe
Q psy4975 5 DGWL-HTGDLAYRLPDGTHFII 25 (126)
Q Consensus 5 ~g~~-~TGD~~~~~~~g~l~~~ 25 (126)
+||| .|-|-...|+||.+.+.
T Consensus 67 NGYYi~TEDSFl~D~dGNITLs 88 (149)
T PF15121_consen 67 NGYYIWTEDSFLCDEDGNITLS 88 (149)
T ss_pred CccEEEeccceeecCCCCEeec
Confidence 6766 89999999999999886
No 135
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=53.08 E-value=25 Score=24.39 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=27.1
Q ss_pred EEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 15 YRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 15 ~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
.+.++|++.+- +|.++|..|.++|+|-++-+|.
T Consensus 168 viTDnGN~IlDv~~~~i~dp~~le~~l~~IpGVVE~GlF~ 207 (227)
T COG0120 168 VITDNGNYILDVHFGRIEDPEELEKELNAIPGVVENGLFA 207 (227)
T ss_pred EEeeCCCEEEEecCCCcCCHHHHHHHHhCCCCEEEecccc
Confidence 56677877765 8999999999999988777664
No 136
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=52.49 E-value=63 Score=21.08 Aligned_cols=53 Identities=19% Similarity=0.117 Sum_probs=32.8
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC-CCCHHHHHHHHHhhcCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-SVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~~l~~ 84 (126)
...|.+.+.+.|+|.++.++...+. .++.+.+.... .....+++..+.+.+.+
T Consensus 56 A~~Ia~~v~~v~~V~dA~vvVtg~~-----A~Vgv~~~~~~~~~~~~~iK~~Va~~Vk~ 109 (158)
T TIGR02898 56 ADEIASEAAKVKGVKDATVVITGNY-----AYVGVDLTNGLEGSVTDELKEKVAETVKS 109 (158)
T ss_pred HHHHHHHHhcCCCCceEEEEEECCE-----EEEEEEcCCCcchhhHHHHHHHHHHHHHh
Confidence 4567777788999999998844322 44444444332 22345677777666555
No 137
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=49.99 E-value=56 Score=22.72 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=28.2
Q ss_pred ceecC-ceEEEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEE
Q psy4975 7 WLHTG-DLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVI 46 (126)
Q Consensus 7 ~~~TG-D~~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~ 46 (126)
+.+.+ +-.++.++|++.+- .|..++..|.+.|+|-+.-+|
T Consensus 161 ~~R~~~~~p~vTDnGN~IlD~~f~~i~dp~~l~~~L~~ipGVVe~GlF 208 (228)
T PRK13978 161 ERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYF 208 (228)
T ss_pred EEEecCCCceECCCCcEEEEecCCCcCCHHHHHHHHhcCCcEeeeCCc
Confidence 44433 33456778877665 788999999999998876444
No 138
>PRK14588 tRNA pseudouridine synthase ACD; Provisional
Probab=49.82 E-value=92 Score=22.15 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=29.9
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCC--CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFG--ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
-.+||.+|.+..+ .++-+++..+...| ....++ ........+...+...|++.||+
T Consensus 28 q~~Le~aL~~l~~-~~i~i~~AgRTDaGVHA~gQv~-~f~~~~~~~~~~l~~~LN~~LP~ 85 (272)
T PRK14588 28 QGALEAAWQALTQ-ERRRIVLAGRTDAGVHARGQVA-HVQTDTRHSLATIWRGLNAHLPE 85 (272)
T ss_pred HHHHHHHHHHhhC-CCceEEEecCCCcCcCccccEE-EEEcCCCCCHHHHHHHHHhcCCC
Confidence 4678888877643 34445555443333 111111 11112234567888999988853
No 139
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=49.57 E-value=16 Score=16.35 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=16.6
Q ss_pred cccCCCCCccchHHHHHHHhc
Q psy4975 99 FIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 99 ~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.+-++.+|+|+...+.+++.+
T Consensus 8 ~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 8 EFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHSTTSSSEEEHHHHHHHHHH
T ss_pred HHCCCCCCcCCHHHHHHHHHh
Confidence 356788999999998887653
No 140
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=48.98 E-value=11 Score=21.27 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=12.8
Q ss_pred CCCceecCceEEEcC
Q psy4975 4 DDGWLHTGDLAYRLP 18 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~ 18 (126)
.+|||.+||-|.+++
T Consensus 38 mdGYy~agngG~i~N 52 (80)
T PF12433_consen 38 MDGYYAAGNGGWIDN 52 (80)
T ss_pred CCceEEcCCCceeec
Confidence 489999999999874
No 141
>PRK12434 tRNA pseudouridine synthase A; Reviewed
Probab=47.67 E-value=94 Score=21.66 Aligned_cols=55 Identities=15% Similarity=0.382 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCcceEEEEeeecCCCC--CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 28 CELESIFRQHPDVEDVAVIGIPHDVFG--ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 28 ~~iE~~l~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
.+||++|....+ .++-+++..+...| ....++-... ........+...+++.||+
T Consensus 30 ~~le~aL~~~~~-~~~~~~~agRTD~GVHA~~qv~~f~~-~~~~~~~~l~~~lN~~LP~ 86 (245)
T PRK12434 30 GKIESVLSEMTG-EEIEIIGCGRTDAGVHALNQVANFQT-DEKLSEDKIKKYLNEYLPN 86 (245)
T ss_pred HHHHHHHHHHhC-CCeEEEEeccCCCCcCccCcEEEEEc-CCCCCHHHHHHHHHccCCC
Confidence 578888877644 45555555544433 1111111111 2234567888889998854
No 142
>KOG3432|consensus
Probab=46.62 E-value=68 Score=19.70 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=48.1
Q ss_pred eecCceEEEcCCC--cEEEe----ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhh
Q psy4975 8 LHTGDLAYRLPDG--THFII----SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81 (126)
Q Consensus 8 ~~TGD~~~~~~~g--~l~~~----~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 81 (126)
|.-|-+|..++++ .|.+. ..++||.++.+...=.+.+++.. .+-+.++++..
T Consensus 22 fLlaGvg~v~~~r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLI----------------------nq~~Ae~iR~~ 79 (121)
T KOG3432|consen 22 FLLAGVGEVNENREPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILI----------------------NQFIAEMIRDR 79 (121)
T ss_pred eeeecccccccCCCCCEEEEeccCCHHHHHHHHHhhccccCeEEEEE----------------------hHHHHHHHHHH
Confidence 3344566666443 33333 89999999988654223222211 12355556666
Q ss_pred cCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975 82 VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 82 l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~ 116 (126)
+..|..+-..++.++.++=|.+|+-..--+..+.+
T Consensus 80 vD~h~~~vPAvLeIpSKdhPYd~~kDSiL~R~r~~ 114 (121)
T KOG3432|consen 80 VDAHTQAVPAVLEIPSKDHPYDPSKDSILRRARGL 114 (121)
T ss_pred HHhccccCCeeEEecCCCCCCCchHHHHHHHHHhc
Confidence 66665444336666777888888544333333433
No 143
>PRK00021 truA tRNA pseudouridine synthase A; Validated
Probab=46.12 E-value=99 Score=21.46 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=30.4
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCC--CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFG--ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
-.+||++|..... +++-+.+..+...| .....+-+.. ....+.+.+...+++.||+
T Consensus 28 q~~le~aL~~~~~-~~~~~~~agRTD~GVHA~~qvv~~~~-~~~~~~~~~~~~lN~~Lp~ 85 (244)
T PRK00021 28 QGELEKALSKLAG-EPVRVIGAGRTDAGVHALGQVAHFDT-PAPRPPEKWRRALNALLPD 85 (244)
T ss_pred HHHHHHHHHHHhC-CCeEEEEEccCCCcccccCcEEEEEe-CCCCCHHHHHHHHHhcCCC
Confidence 4678888877654 45445555444333 1111111111 1235667888899988743
No 144
>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving
Probab=45.54 E-value=10 Score=24.75 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.9
Q ss_pred CCCCCCceecCceEEE
Q psy4975 1 MLDDDGWLHTGDLAYR 16 (126)
Q Consensus 1 ~~~~~g~~~TGD~~~~ 16 (126)
++|...||.|+|++.|
T Consensus 66 T~D~k~~yKtaDI~QM 81 (162)
T cd08047 66 TLDKKNLYKTADISQM 81 (162)
T ss_pred ccccCceEEecChhhE
Confidence 3678889999999988
No 145
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=44.44 E-value=38 Score=16.20 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=13.8
Q ss_pred CCCCceecCceEEEcCCCcEEEe
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII 25 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~ 25 (126)
+...-|..||++.. +|.+|..
T Consensus 5 ~~~~~Y~~Gd~V~~--~g~~y~a 25 (41)
T PF02839_consen 5 DPGTTYNAGDRVSY--NGKLYQA 25 (41)
T ss_dssp -TTCEE-TT-EEEE--TTEEEEE
T ss_pred CCCCEEcCCCEEEE--CCCEEEE
Confidence 45667899999987 5777765
No 146
>PLN02384 ribose-5-phosphate isomerase
Probab=44.29 E-value=72 Score=22.75 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=26.0
Q ss_pred ceEEEcCCCcEEEe--------ChHHHHHHHhcCCCcceEEEE
Q psy4975 12 DLAYRLPDGTHFII--------SPCELESIFRQHPDVEDVAVI 46 (126)
Q Consensus 12 D~~~~~~~g~l~~~--------~~~~iE~~l~~~~~v~~~~~~ 46 (126)
|-.++.++|++.+- .|..++..|.+.|+|-+.-+|
T Consensus 202 ~~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~ipGVVE~GLF 244 (264)
T PLN02384 202 EEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRLAGVVEHGMF 244 (264)
T ss_pred CCcEECCCCCEEEEecCCCCCCCHHHHHHHHhCCCcEeccCcc
Confidence 34567788877664 677899999999998776444
No 147
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=44.11 E-value=1e+02 Score=21.15 Aligned_cols=56 Identities=9% Similarity=0.197 Sum_probs=30.7
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCC--CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFG--ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
-.+||++|..... .++.+.+..+...| ....++-... ........+...+++.||+
T Consensus 27 q~~le~aL~~~~~-~~i~~~~agRTD~GVHA~~qv~~f~~-~~~~~~~~~~~~lN~~Lp~ 84 (227)
T TIGR00071 27 QGELEKALEAIGK-KKITIMSAGRTDKGVHAMGQVISFDT-PKEIPDNKLNAKLNALLPP 84 (227)
T ss_pred HHHHHHHHHHHhC-CCeeEEeeccCcCCccccccEEEEEe-cCCCCHHHHHHHHHccCCC
Confidence 4678888877644 55555555544433 1111111111 1234567788889988853
No 148
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U
Probab=42.24 E-value=86 Score=21.75 Aligned_cols=57 Identities=9% Similarity=0.080 Sum_probs=30.5
Q ss_pred hHHHHHHHhcCCCc--------ceEEEEeeecCCCC--Cee-EEEEEeCCCCC---CCHHHHHHHHHhhcC
Q psy4975 27 PCELESIFRQHPDV--------EDVAVIGIPHDVFG--ELP-AAVVVPKPNSS---VTAEEVKQFVEDQVN 83 (126)
Q Consensus 27 ~~~iE~~l~~~~~v--------~~~~~~~~~~~~~~--~~~-~~~v~~~~~~~---~~~~~~~~~l~~~l~ 83 (126)
-.+||.+|.+...+ .+.-+.+..+...| ... ++.+....... .....+...+++.||
T Consensus 24 q~~le~aL~~~~~~~~~~~~~~~~~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~~~~~~~~lN~~Lp 94 (245)
T cd02568 24 EGELERALVKAGAISESNAGDPKKIGFSRAARTDKGVHAARNVVSLKVIIDDPEGLGIGEDLVEKLNSHLP 94 (245)
T ss_pred HHHHHHHHHHcCCcCccccCChhhcceeeecccccchhheeeEEEEEEeccccccccchHHHHHHHHccCC
Confidence 47889999888765 34455555444333 111 11121111111 125678888888875
No 149
>PF04658 TAFII55_N: TAFII55 protein conserved region; InterPro: IPR006751 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits its acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminal of the protein [].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005669 transcription factor TFIID complex
Probab=41.60 E-value=14 Score=24.20 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.7
Q ss_pred CCCCCCceecCceEEE
Q psy4975 1 MLDDDGWLHTGDLAYR 16 (126)
Q Consensus 1 ~~~~~g~~~TGD~~~~ 16 (126)
++|...||.|+|++.|
T Consensus 68 T~D~k~~yKtaDI~QM 83 (162)
T PF04658_consen 68 TLDKKNFYKTADISQM 83 (162)
T ss_pred ecccCeEEEEecccee
Confidence 3677889999999988
No 150
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=41.38 E-value=92 Score=21.43 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=24.8
Q ss_pred EEEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEE
Q psy4975 14 AYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVI 46 (126)
Q Consensus 14 ~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~ 46 (126)
.++.++|++.+- .|..++..|.+.|||-+.-++
T Consensus 163 p~vTd~Gn~IiD~~~~~i~~p~~l~~~l~~i~GVve~GlF 202 (220)
T PRK00702 163 PVVTDNGNYILDVHFGRIPDPEALEKELNNIPGVVEHGLF 202 (220)
T ss_pred CEECCCCCEEEEecCCCcCCHHHHHHHhcCCCcEeeeccC
Confidence 345667766654 788999999999998776444
No 151
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=39.61 E-value=70 Score=22.60 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=20.7
Q ss_pred CCceecCceEEEcCCCcEEEeChHHHHHHHhcCCCcceEE
Q psy4975 5 DGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVA 44 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~~~~~iE~~l~~~~~v~~~~ 44 (126)
-|||+|+-.+.+ .++..|+..+........++
T Consensus 82 VGWY~S~p~~~~--------~~~s~id~~~~~q~~~~~~v 113 (266)
T cd08065 82 VGWYQSTYLGSF--------FTRDLIETQYNYQEAIEESV 113 (266)
T ss_pred EEeEeecCCCCc--------CCHHHHHHHHHHhccCCCCE
Confidence 389999985544 25788888776643333333
No 152
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=38.43 E-value=32 Score=14.68 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=14.1
Q ss_pred cccCCCCCccchHHHHHH
Q psy4975 99 FIPRTMSGKVKRKDLNET 116 (126)
Q Consensus 99 ~lp~t~~GKv~r~~l~~~ 116 (126)
.+-.+.+|+++..++.+.
T Consensus 7 ~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 7 QFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHTTTSSSEEEHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHH
Confidence 455778999999888764
No 153
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=38.42 E-value=13 Score=13.95 Aligned_cols=6 Identities=50% Similarity=1.310 Sum_probs=4.7
Q ss_pred CCceec
Q psy4975 5 DGWLHT 10 (126)
Q Consensus 5 ~g~~~T 10 (126)
.||++|
T Consensus 8 ~~WWrt 13 (14)
T PF08255_consen 8 HGWWRT 13 (14)
T ss_pred eeEEEc
Confidence 588887
No 154
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=37.32 E-value=52 Score=21.81 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=23.2
Q ss_pred EcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 16 RLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 16 ~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
+.++|++.+- .|.+++..|.+.|+|-+.-.+.
T Consensus 120 vTDnGN~IlD~~f~~i~d~~~l~~~L~~i~GVVe~GlF~ 158 (173)
T PF06026_consen 120 VTDNGNYILDVHFGPIDDPEELERELKSIPGVVETGLFL 158 (173)
T ss_dssp B-TTS-EEEEEESSSBSSHHHHHHHHHTSTTEEEESEE-
T ss_pred EeCCCCEEEEecCCCCCCHHHHHHHHhCCCCEEeECcCc
Confidence 4556766654 8999999999999987766653
No 155
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=36.74 E-value=65 Score=16.65 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=29.1
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHh
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVED 80 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 80 (126)
...|+++|.+.++|..+-+-.. . -.+.+...+. ....+++.+.+.+
T Consensus 13 ~~~v~~~l~~~~GV~~v~vd~~-~------~~v~v~~~~~-~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 13 AKKVEKALSKLPGVKSVKVDLE-T------KTVTVTYDPD-KTSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHHTSTTEEEEEEETT-T------TEEEEEESTT-TSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEECC-C------CEEEEEEecC-CCCHHHHHHHHHH
Confidence 4679999999999987766311 1 1222333333 3666888887776
No 156
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=36.73 E-value=54 Score=22.17 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=29.9
Q ss_pred CCCceecCceEEEcCCCcEEEe------ChHHHHHHHhcCCCc--ceEEEEee
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII------SPCELESIFRQHPDV--EDVAVIGI 48 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~------~~~~iE~~l~~~~~v--~~~~~~~~ 48 (126)
+++-+.|||+.+-...|.|.++ ++.+.-+.+.++-.. -+.+.++.
T Consensus 128 ed~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~~fe~lLvGd 180 (199)
T PF14597_consen 128 EDRVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLRRLAAYPDFEWLLVGD 180 (199)
T ss_dssp TTTEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHHHHHT-TT--EEEESB
T ss_pred ccceEEecceeeecCCCCeEECChHHcCCHHHHHHHHHHHhccccccEEeecC
Confidence 5678999999999999999998 788888777765444 24555443
No 157
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.
Probab=36.15 E-value=1.5e+02 Score=20.52 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=31.2
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCC-CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFG-ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
-.+||++|..... .+.-+.+..+...| ....-++...-......+.+...+++.||+
T Consensus 23 q~~le~aL~~~~~-~~~~i~~agRTD~GVHA~~qvv~~~~~~~~~~~~~~~~lN~~Lp~ 80 (239)
T cd02570 23 QGELEKALSKIAG-EPVRVIGAGRTDAGVHALGQVAHFDTPSEIPLEKLIKALNSLLPP 80 (239)
T ss_pred HHHHHHHHHHHhC-CCeEEEEECcCCCCcCccccEEEEEECCCCCHHHHHHHHHccCCC
Confidence 4678888877654 45555555444433 111111111112234567888999998864
No 158
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=35.09 E-value=39 Score=14.92 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=15.3
Q ss_pred ccCCCCCccchHHHHHHHh
Q psy4975 100 IPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 100 lp~t~~GKv~r~~l~~~~~ 118 (126)
+-.+.+|+++...+.+.+.
T Consensus 9 ~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 9 FDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp H-TTSSSEEEHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHH
Confidence 4567899999999998876
No 159
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.77 E-value=95 Score=19.55 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=21.4
Q ss_pred EEEcCCCcEEEe----------ChHHHHHHHhcCCCcceEEEEee
Q psy4975 14 AYRLPDGTHFII----------SPCELESIFRQHPDVEDVAVIGI 48 (126)
Q Consensus 14 ~~~~~~g~l~~~----------~~~~iE~~l~~~~~v~~~~~~~~ 48 (126)
..+.++|.++++ .|.+|.++..-. +..+.-++.+
T Consensus 69 ~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~ta-GL~~t~~~~v 112 (127)
T PF11253_consen 69 TNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTA-GLVQTKSCAV 112 (127)
T ss_pred hhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhc-CCeeeeeecc
Confidence 345678888887 788888875443 4444444333
No 160
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=33.64 E-value=32 Score=18.06 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=8.7
Q ss_pred eecCceEEEcCCC
Q psy4975 8 LHTGDLAYRLPDG 20 (126)
Q Consensus 8 ~~TGD~~~~~~~g 20 (126)
|.+||++++...|
T Consensus 1 f~~GDvV~LKSGG 13 (53)
T PF09926_consen 1 FKIGDVVQLKSGG 13 (53)
T ss_pred CCCCCEEEEccCC
Confidence 5678888776544
No 161
>COG3811 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.04 E-value=16 Score=20.77 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=6.9
Q ss_pred CCCCCCceecC
Q psy4975 1 MLDDDGWLHTG 11 (126)
Q Consensus 1 ~~~~~g~~~TG 11 (126)
|++.|||..+|
T Consensus 35 C~tRdGw~l~d 45 (85)
T COG3811 35 CYTRDGWLLPD 45 (85)
T ss_pred EecccccccCC
Confidence 35667777665
No 162
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=32.97 E-value=1.6e+02 Score=20.19 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEcCCCcEEEe--------ChHHHHHHHhcCCCcceEEEE
Q psy4975 15 YRLPDGTHFII--------SPCELESIFRQHPDVEDVAVI 46 (126)
Q Consensus 15 ~~~~~g~l~~~--------~~~~iE~~l~~~~~v~~~~~~ 46 (126)
.+.++|++.+- .|.+++..|.+.|||-+.-++
T Consensus 163 ~vTdnGN~IiD~~~~~~~~d~~~l~~~l~~i~GVve~GlF 202 (218)
T TIGR00021 163 VVTDNGNYILDCHFGKIIPDPEALEEELKSIPGVVETGLF 202 (218)
T ss_pred EECCCCCEEEEeeCCCCCCCHHHHHHHHhcCCCEEEeeee
Confidence 55777866554 577899999999999887665
No 163
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=31.68 E-value=36 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=15.2
Q ss_pred CcccCCCCCccchHHHHHHHhcc
Q psy4975 98 DFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 98 ~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..||.++.|++.+......|..+
T Consensus 14 ~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 14 NEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp TTS-B-TTS-EEHHHHHHHT---
T ss_pred hhCcCCccCCEeHHHHHHHcccc
Confidence 57999999999999988888754
No 164
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=30.59 E-value=97 Score=17.63 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=20.8
Q ss_pred ceEEEcCCCcEEEe-ChHHHHHHHhcCCCc
Q psy4975 12 DLAYRLPDGTHFII-SPCELESIFRQHPDV 40 (126)
Q Consensus 12 D~~~~~~~g~l~~~-~~~~iE~~l~~~~~v 40 (126)
|+...+++|.+++. -.+.=+++|.++|..
T Consensus 39 dmI~~~~~G~i~V~~iCe~C~eaL~~nPe~ 68 (76)
T PF10955_consen 39 DMISYDENGDIHVKVICEDCQEALERNPEY 68 (76)
T ss_pred hheEEcCCCCEEEEEecHHHHHHHHhCcch
Confidence 78888888888877 455556666666654
No 165
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=30.55 E-value=1.1e+02 Score=18.60 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=17.0
Q ss_pred CCcEEEeChHHHHHHHhcC
Q psy4975 19 DGTHFIISPCELESIFRQH 37 (126)
Q Consensus 19 ~g~l~~~~~~~iE~~l~~~ 37 (126)
+|.|.+++|.+.+.++...
T Consensus 50 dG~f~~vnP~dy~~vl~~~ 68 (109)
T PF08887_consen 50 DGLFWLVNPDDYEDVLDEW 68 (109)
T ss_pred CcEEEEECHHHHHHHHHHH
Confidence 7999999999999998774
No 166
>COG5475 Uncharacterized small protein [Function unknown]
Probab=30.19 E-value=44 Score=17.80 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=10.6
Q ss_pred ceecCceEEEcCCC
Q psy4975 7 WLHTGDLAYRLPDG 20 (126)
Q Consensus 7 ~~~TGD~~~~~~~g 20 (126)
-|.|||.+++.+.|
T Consensus 4 ~FstgdvV~lKsGG 17 (60)
T COG5475 4 SFSTGDVVTLKSGG 17 (60)
T ss_pred eeecCcEEEeecCC
Confidence 37889998887655
No 167
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=29.30 E-value=1e+02 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=24.9
Q ss_pred EEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEE
Q psy4975 15 YRLPDGTHFII-------SPCELESIFRQHPDVEDVAVI 46 (126)
Q Consensus 15 ~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~ 46 (126)
.+.++|++.+- .|.+++..|.+.|||-+.-++
T Consensus 164 ~~Td~gn~i~D~~~~~~~~~~~l~~~l~~i~GVve~GlF 202 (213)
T cd01398 164 VVTDNGNYILDVHFGTIEDPEALEKELKSIPGVVEHGLF 202 (213)
T ss_pred EECCCCCEEEEecCCCCCCHHHHHHHHhcCCCeeeeCCC
Confidence 45667776665 788999999999998877555
No 168
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=29.18 E-value=23 Score=20.53 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=6.6
Q ss_pred CCCCCCceecC
Q psy4975 1 MLDDDGWLHTG 11 (126)
Q Consensus 1 ~~~~~g~~~TG 11 (126)
|++.+||+.+|
T Consensus 35 C~TReG~~l~d 45 (85)
T PF09857_consen 35 CYTREGWLLSD 45 (85)
T ss_pred EEccCCeeeCC
Confidence 35666666655
No 169
>PRK14586 tRNA pseudouridine synthase ACD; Provisional
Probab=28.71 E-value=2.1e+02 Score=19.98 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=30.2
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCC--CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFG--ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
-.+||.+|....+ .++-+++..+...| ....++-...+....+...+...+++.||+
T Consensus 28 q~~le~aL~~~~~-~~i~~~~agRTD~GVHA~~qv~~f~~~~~~~~~~~l~~~lN~~LP~ 86 (245)
T PRK14586 28 QGVFEDALERIFK-QRIYTQAAGRTDTGVHANGQVIAFNCPNDRMTEEDIKNAMNANLPD 86 (245)
T ss_pred HHHHHHHHHHHhC-CCeeEEEecCCccCCCccCcEEEEEecCCcCCHHHHHHHHHccCCC
Confidence 4678888877643 34444444443333 222222222222225677899999998854
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=28.54 E-value=1.9e+02 Score=20.47 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 59 AVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 59 ~~v~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
-+|......-.+...+.+.++. .|.++|++ +|+|.-.. +-...+.|+..+++.++.
T Consensus 82 RlIev~k~~L~~l~~l~~~l~~------~~~kFIlf--~DDLsFe~-~d~~yk~LKs~LeGgle~ 137 (249)
T PF05673_consen 82 RLIEVSKEDLGDLPELLDLLRD------RPYKFILF--CDDLSFEE-GDTEYKALKSVLEGGLEA 137 (249)
T ss_pred eEEEECHHHhccHHHHHHHHhc------CCCCEEEE--ecCCCCCC-CcHHHHHHHHHhcCcccc
Confidence 3344443334455666666664 56667888 89887665 777889999999887654
No 171
>PRK13687 hypothetical protein; Provisional
Probab=27.87 E-value=22 Score=20.54 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=6.5
Q ss_pred CCCCCCceecC
Q psy4975 1 MLDDDGWLHTG 11 (126)
Q Consensus 1 ~~~~~g~~~TG 11 (126)
|++.+||..+|
T Consensus 35 C~TReG~~l~d 45 (85)
T PRK13687 35 CYTREGWLLAD 45 (85)
T ss_pred EEccCCcccCC
Confidence 35566666655
No 172
>TIGR03369 cellulose_bcsE cellulose biosynthesis protein BcsE. This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm. Members are found in the vicinity of other cellulose biosynthesis genes. The model does not include a much less well-conserved N-terminal region about 150 amino acids in length for most members. Solano, et al. suggest this protein acts as a protease.
Probab=27.58 E-value=75 Score=23.36 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=23.3
Q ss_pred ceecCceEEEcCCCcEEEe----ChHHHHHHHhcCC
Q psy4975 7 WLHTGDLAYRLPDGTHFII----SPCELESIFRQHP 38 (126)
Q Consensus 7 ~~~TGD~~~~~~~g~l~~~----~~~~iE~~l~~~~ 38 (126)
.=++||+...+ ++.+|+- -+.+++.++..+-
T Consensus 260 ~rR~GDv~T~~-~~~LylFL~aCR~nDld~AL~~IF 294 (322)
T TIGR03369 260 IRRAGDLCTAG-NNSLYLFLFACRLNDVDIALNHIF 294 (322)
T ss_pred cCcCCCEEEee-CCeEEEEEeecccccHHHHHHHhc
Confidence 45789999997 4555554 7889999888753
No 173
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=27.32 E-value=34 Score=22.37 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=12.3
Q ss_pred cCcccCCCCCccc
Q psy4975 97 FDFIPRTMSGKVK 109 (126)
Q Consensus 97 ~~~lp~t~~GKv~ 109 (126)
|+.+|.|-+||+.
T Consensus 46 V~~~P~Td~gKI~ 58 (157)
T PF06092_consen 46 VKNFPLTDSGKIN 58 (157)
T ss_pred eecCCCCccchhh
Confidence 7999999999997
No 174
>KOG1407|consensus
Probab=27.07 E-value=91 Score=22.47 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=28.4
Q ss_pred CCceecCceEEEcCC-CcEEEeChHHHHHH--HhcCCCcceEEEEee
Q psy4975 5 DGWLHTGDLAYRLPD-GTHFIISPCELESI--FRQHPDVEDVAVIGI 48 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~-g~l~~~~~~~iE~~--l~~~~~v~~~~~~~~ 48 (126)
--|..++|+.++... |.+.|++-.+++-+ |.+|| .+|+.+..
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f 197 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEF 197 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEE
Confidence 357799999999776 89999822244432 45677 66766654
No 175
>COG3918 Predicted membrane protein [Function unknown]
Probab=25.51 E-value=38 Score=21.13 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=12.7
Q ss_pred cCcccCCCCCccchH
Q psy4975 97 FDFIPRTMSGKVKRK 111 (126)
Q Consensus 97 ~~~lp~t~~GKv~r~ 111 (126)
.|++|.||+-|+.-.
T Consensus 62 tDqlPsTPsRkVp~q 76 (153)
T COG3918 62 TDQLPSTPSRKVPPQ 76 (153)
T ss_pred hccCCCCCCCcCChh
Confidence 799999999998743
No 176
>PF11519 DUF3222: Protein of unknown function (DUF3222); InterPro: IPR021599 This family of proteins with unknown function appears to be restricted to Rhodopseudomonas. ; PDB: 2JS3_B.
Probab=25.16 E-value=23 Score=19.42 Aligned_cols=12 Identities=50% Similarity=0.958 Sum_probs=4.5
Q ss_pred ceecCceEEEcC
Q psy4975 7 WLHTGDLAYRLP 18 (126)
Q Consensus 7 ~~~TGD~~~~~~ 18 (126)
|+.|||-..-.+
T Consensus 44 wl~tgdei~h~p 55 (74)
T PF11519_consen 44 WLQTGDEIKHAP 55 (74)
T ss_dssp TTS--SS----T
T ss_pred hhhcCcccccCC
Confidence 888998655433
No 177
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=25.07 E-value=1.4e+02 Score=16.78 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=8.4
Q ss_pred eEEEEeeecCCCCCeeEEEE
Q psy4975 42 DVAVIGIPHDVFGELPAAVV 61 (126)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~v 61 (126)
....+.+..+.+.+.+.+++
T Consensus 59 ~~~~~~v~~P~G~e~i~~ia 78 (83)
T PF14326_consen 59 DRFSFTVDPPFGKERIVAIA 78 (83)
T ss_pred CceEEEEcCCCCcEEEEEEE
Confidence 33334343343334444444
No 178
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=23.87 E-value=1.2e+02 Score=15.71 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=23.9
Q ss_pred CCCceecCceEEEcCCCcEEEe-------ChHHHHHHHhcCCCcceEE
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVA 44 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~ 44 (126)
.+.|+.-.++--.-.+|.+++. ....++..+...+++....
T Consensus 10 ~~~~~~~~~i~v~v~~g~v~L~G~v~s~~~~~~a~~~a~~v~gv~~V~ 57 (64)
T PF04972_consen 10 ADPWLPDSNISVSVENGVVTLSGEVPSQEQRDAAERLARSVAGVREVV 57 (64)
T ss_dssp ---CTT-TTEEEEEECTEEEEEEEESSCHHHHHHHHHHHCC-STSEEE
T ss_pred cccccCCCeEEEEEECCEEEEEeeCcHHHHHHhHHhhhccCCCcCEEE
Confidence 3445555555555667888887 4566666777778876654
No 179
>PF10995 DUF2819: Protein of unknown function (DUF2819); InterPro: IPR017745 This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm []. The protein is encoded in the vicinity of other cellulose biosynthesis genes and has been [] suggested to act as a protease.
Probab=23.56 E-value=1.3e+02 Score=22.12 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=23.9
Q ss_pred CceecCceEEEcCCCcEEEe----ChHHHHHHHhcCC
Q psy4975 6 GWLHTGDLAYRLPDGTHFII----SPCELESIFRQHP 38 (126)
Q Consensus 6 g~~~TGD~~~~~~~g~l~~~----~~~~iE~~l~~~~ 38 (126)
.+=+.||+...++ +.+|+- -.++++.++..+.
T Consensus 254 ~~rR~GDv~T~~~-~~lYLFL~aCR~nDld~AL~~IF 289 (316)
T PF10995_consen 254 HIRRDGDVVTADD-NRLYLFLSACRINDLDTALNNIF 289 (316)
T ss_pred CcccCccEEEecC-CEEEEEEEecchhhHHHHHHHhc
Confidence 4557899999974 555544 7899999988753
No 180
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=23.08 E-value=1.3e+02 Score=15.84 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=31.9
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS 85 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~ 85 (126)
..++.+.+.++|+|.+|..+.-.. ...+.+.. .+.+++.+.+...+...
T Consensus 12 ~~~~~~~l~~~p~V~~~~~vtG~~-----d~~~~v~~-----~d~~~l~~~i~~~l~~~ 60 (74)
T PF01037_consen 12 YDEFAEALAEIPEVVECYSVTGEY-----DLILKVRA-----RDMEELEEFIREKLRSI 60 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEESSSS-----SEEEEEEE-----SSHHHHHHHHHHTHHTS
T ss_pred HHHHHHHHHcCCCEEEEEEEeCCC-----CEEEEEEE-----CCHHHHHHHHHHHhhcC
Confidence 577888999999999999873211 23333332 35677777776654433
No 181
>KOG2317|consensus
Probab=22.98 E-value=1.4e+02 Score=19.14 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=47.1
Q ss_pred CCceecCceEEEcCCCcEEEe-ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhhcC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII-SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVN 83 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~-~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 83 (126)
+--|..|-+|-+.+++.+.-. -..+++..+.+..++..++-... ...+...+.+.+ ..+....-+...+.+.
T Consensus 30 ~~~~~SGqigl~P~s~~~~~gg~~~q~~q~l~n~~~il~~a~a~~-----~~~V~~~i~l~d--~~~f~~vn~v~~k~~~ 102 (138)
T KOG2317|consen 30 DVVFISGQIGLDPPSMKLVEGGIVDQTEQALLNLEEILKAAGASL-----DLVVKVTIFLAD--IIDFAAVNKVYAKYFP 102 (138)
T ss_pred CEEEEeccccccCCCCCEeccchHHHHHHHHHHHHHHHHHhccCc-----cccEEEEEEEec--chhHHHHHHHHHHHcC
Confidence 345667777777656555444 45556666666555443322111 011222233332 2333444444445455
Q ss_pred CCCCCCccEEEeecCcccCCCCCccc
Q psy4975 84 PSKRLSGGVFLCSFDFIPRTMSGKVK 109 (126)
Q Consensus 84 ~~~~p~~~~~~~~~~~lp~t~~GKv~ 109 (126)
...-+++ .+. +..+|++ ||+.
T Consensus 103 ~~~pars-~~~--v~alp~~--~~ie 123 (138)
T KOG2317|consen 103 KPNPARS-CVQ--VAALPLN--GKIE 123 (138)
T ss_pred CCCcchh-hHH--HhhcCCC--CceE
Confidence 5555554 666 8888887 5554
No 182
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=22.91 E-value=2.9e+02 Score=19.71 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=30.1
Q ss_pred hHHHHHHHhcCCCcceEEEEeeecCCCC-CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 27 PCELESIFRQHPDVEDVAVIGIPHDVFG-ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 27 ~~~iE~~l~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
-.+||.+|.++..... .+.+..+...| ....-++............+...+++.||+
T Consensus 28 Q~~le~aL~~i~~~~~-~i~~AGRTD~GVHA~gqv~hfd~~~~~~~~~~~~~lN~~Lp~ 85 (266)
T COG0101 28 QGELEKALSKIGGESV-RVIGAGRTDAGVHALGQVVHFDTPADRPLEKLVRALNALLPP 85 (266)
T ss_pred HHHHHHHHHHhcCCcc-eeEEecCCCcCccccccEEEEEcCCcccHHHHHHHHHhcCCC
Confidence 4688888888766555 23333332222 111111111111122267899999998875
No 183
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=22.76 E-value=1.4e+02 Score=23.89 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=25.4
Q ss_pred CceecCceEEEcCC-CcEEEe-ChHHHHHHHhcC
Q psy4975 6 GWLHTGDLAYRLPD-GTHFII-SPCELESIFRQH 37 (126)
Q Consensus 6 g~~~TGD~~~~~~~-g~l~~~-~~~~iE~~l~~~ 37 (126)
++.++||+.++|-. +.+.+. +.+|++....+.
T Consensus 505 alvrdGD~I~ID~~~~~l~l~vseeEla~R~~~~ 538 (575)
T COG0129 505 ALVRDGDIIRIDIPNRTLDLLVSEEELAARRAEW 538 (575)
T ss_pred EEEecCCEEEEECCCCeeeeecCHHHHHHHHhhc
Confidence 47899999999765 677776 888998887554
No 184
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=22.67 E-value=1.1e+02 Score=16.46 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=15.9
Q ss_pred CCCceecCceEEEcCCCcEEE
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFI 24 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~ 24 (126)
+|-|+..||...+...+.+.+
T Consensus 36 ~D~~L~~G~~l~l~~g~~vvl 56 (63)
T PF11142_consen 36 DDYWLQAGDSLRLRRGGRVVL 56 (63)
T ss_pred CCEEECCCCEEEeCCCCEEEE
Confidence 356889999998877666654
No 185
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=22.27 E-value=67 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=6.7
Q ss_pred EEEcCCCcEEEeChHHHHHHH
Q psy4975 14 AYRLPDGTHFIISPCELESIF 34 (126)
Q Consensus 14 ~~~~~~g~l~~~~~~~iE~~l 34 (126)
|.+|+.|.|.++++.+++.+.
T Consensus 145 Gv~DdrGkfIyIs~eE~~~va 165 (188)
T PF09756_consen 145 GVIDDRGKFIYISEEEMEAVA 165 (188)
T ss_dssp EEE-TT--EEE----------
T ss_pred eeEcCCCCeEEecHHHHHHHH
Confidence 678889999888888887754
No 186
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=22.01 E-value=66 Score=21.27 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=14.5
Q ss_pred CCCCCccchHHHHHHHhcc
Q psy4975 102 RTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 102 ~t~~GKv~r~~l~~~~~~~ 120 (126)
.+++|+++|++|.++.-+.
T Consensus 57 l~~~g~idR~~L~~~vF~d 75 (180)
T PF01121_consen 57 LDEDGEIDRKKLAEIVFSD 75 (180)
T ss_dssp BETTSSB-HHHHHHHHTTS
T ss_pred cCCCCCChHHHHHHHHhcC
Confidence 4578999999999987654
No 187
>PHA02553 6 baseplate wedge subunit; Provisional
Probab=21.91 E-value=3.9e+02 Score=21.70 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=33.2
Q ss_pred ChHHHHHHHhc-CCCcceEEEEeeecCCCC--CeeEEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q psy4975 26 SPCELESIFRQ-HPDVEDVAVIGIPHDVFG--ELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK 86 (126)
Q Consensus 26 ~~~~iE~~l~~-~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~ 86 (126)
.+++-|....+ +|+|..+.++........ ..+..+|++..+.... ..+++.+...|..+.
T Consensus 316 Ta~DYE~lA~~~~p~V~rA~~~~~~~~spp~~G~V~VvVvP~~g~~ls-~~l~~~I~~yL~~rr 378 (611)
T PHA02553 316 TASDYEAFVSERFGSIVQAVQCGGDSLKPPVYGYVFIAVKPKSGLYLT-DVQKEDIKNYLKKYN 378 (611)
T ss_pred cHHHHHHHHHhhCCccEEEEEccCCcCCCCCCceEEEEEecCCCCCCC-HHHHHHHHHHHHhcC
Confidence 67888887766 689988887642222110 2455556666554333 344444444444443
No 188
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=20.81 E-value=1.2e+02 Score=15.84 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=11.3
Q ss_pred cCceEEEcCCCcEEEe
Q psy4975 10 TGDLAYRLPDGTHFII 25 (126)
Q Consensus 10 TGD~~~~~~~g~l~~~ 25 (126)
-|.+.+.+++|.+.|.
T Consensus 32 ~~~i~Y~~~dg~yli~ 47 (57)
T PF10411_consen 32 GGGILYVDEDGRYLIQ 47 (57)
T ss_dssp TTEEEEEETTSSEEEE
T ss_pred CCeEEEEcCCCCEEEE
Confidence 4677778888876664
No 189
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=20.68 E-value=70 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.0
Q ss_pred cCcccCCCCCccchHHHHHHHhc
Q psy4975 97 FDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 97 ~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
-+.+|+|+.||+|...+......
T Consensus 142 Y~~v~Lt~~gkiD~~~v~~~i~~ 164 (416)
T COG4100 142 YKAVPLTADGKIDIQAVKTAISD 164 (416)
T ss_pred eeecccccCCcccHHHHHHhcCc
Confidence 46799999999999988876553
No 190
>KOG3050|consensus
Probab=20.53 E-value=38 Score=23.92 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=7.7
Q ss_pred CceecCceE
Q psy4975 6 GWLHTGDLA 14 (126)
Q Consensus 6 g~~~TGD~~ 14 (126)
|||.||+-.
T Consensus 94 GwYttG~d~ 102 (299)
T KOG3050|consen 94 GWYTTGSDP 102 (299)
T ss_pred EEeecCCCC
Confidence 899999865
No 191
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=20.46 E-value=43 Score=19.17 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=11.2
Q ss_pred CCceecCceEEEcC
Q psy4975 5 DGWLHTGDLAYRLP 18 (126)
Q Consensus 5 ~g~~~TGD~~~~~~ 18 (126)
-||+.+||-+++..
T Consensus 40 vGYllSGDPaYIts 53 (79)
T PF06135_consen 40 VGYLLSGDPAYITS 53 (79)
T ss_pred HhheecCCCccccC
Confidence 37899999988853
No 192
>PRK00106 hypothetical protein; Provisional
Probab=20.25 E-value=67 Score=25.34 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=25.8
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeC
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 64 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 64 (126)
-..+||++..+++||..|+++. .|..+-.+|.+.
T Consensus 459 rl~~lE~ia~~~~gV~~~yaiq-----aGREiRviV~p~ 492 (535)
T PRK00106 459 RLRDLEEIANSFDGVQNSFALQ-----AGREIRIMVQPE 492 (535)
T ss_pred HHHHHHHHHhcCCcHHHHHHHh-----cCCeEEEEecCC
Confidence 6788999999999999999983 344466666443
No 193
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8. This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.
Probab=20.18 E-value=36 Score=24.30 Aligned_cols=9 Identities=44% Similarity=0.889 Sum_probs=7.2
Q ss_pred CCceecCce
Q psy4975 5 DGWLHTGDL 13 (126)
Q Consensus 5 ~g~~~TGD~ 13 (126)
=|||+||--
T Consensus 85 VGWY~tg~~ 93 (280)
T cd08062 85 VGWYSTGPK 93 (280)
T ss_pred EEEecCCCC
Confidence 389999954
Done!