Query psy4975
Match_columns 126
No_of_seqs 104 out of 1225
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 22:37:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 99.9 4.9E-27 1.7E-31 175.5 12.4 115 2-119 407-535 (536)
2 1mdb_A 2,3-dihydroxybenzoate-A 99.9 6.2E-27 2.1E-31 175.2 12.9 121 2-126 403-538 (539)
3 4fuq_A Malonyl COA synthetase; 99.9 5.9E-27 2E-31 174.1 12.6 115 2-119 372-500 (503)
4 1t5h_X 4-chlorobenzoyl COA lig 99.9 1.7E-26 5.7E-31 171.5 13.4 111 5-118 378-503 (504)
5 2d1s_A Luciferase, luciferin 4 99.9 2.6E-26 8.8E-31 172.2 14.2 119 2-123 414-547 (548)
6 3r44_A Fatty acyl COA syntheta 99.9 5.2E-26 1.8E-30 169.5 13.0 115 4-122 388-516 (517)
7 3nyq_A Malonyl-COA ligase; A/B 99.9 6.2E-26 2.1E-30 168.7 11.6 111 2-115 378-504 (505)
8 3g7s_A Long-chain-fatty-acid-- 99.9 4.3E-26 1.5E-30 170.9 8.8 116 4-122 412-545 (549)
9 1pg4_A Acetyl-COA synthetase; 99.9 2.6E-25 8.7E-30 169.8 13.2 114 4-120 492-622 (652)
10 3etc_A AMP-binding protein; ad 99.9 1.2E-25 3.9E-30 169.8 10.9 112 5-119 451-579 (580)
11 1v25_A Long-chain-fatty-acid-C 99.9 3.9E-26 1.3E-30 170.9 4.8 117 2-122 408-539 (541)
12 1ry2_A Acetyl-coenzyme A synth 99.9 8.5E-25 2.9E-29 167.3 11.9 114 4-120 501-638 (663)
13 3fce_A D-alanine--poly(phospho 99.9 9.9E-25 3.4E-29 162.2 11.3 114 3-120 374-505 (512)
14 3ipl_A 2-succinylbenzoate--COA 99.9 8.6E-25 2.9E-29 162.0 10.8 113 4-121 373-499 (501)
15 3l8c_A D-alanine--poly(phospho 99.9 6.7E-25 2.3E-29 163.3 10.1 116 3-121 377-514 (521)
16 3rg2_A Enterobactin synthase c 99.9 4.4E-24 1.5E-28 162.0 12.7 114 2-120 407-535 (617)
17 1amu_A GRSA, gramicidin synthe 99.9 1.7E-24 5.7E-29 163.0 10.3 111 3-118 404-528 (563)
18 3o83_A Peptide arylation enzym 99.9 7.6E-26 2.6E-30 169.4 3.0 115 2-120 412-541 (544)
19 3rix_A Luciferase, luciferin 4 99.9 7.5E-26 2.6E-30 169.6 2.8 118 2-121 412-543 (550)
20 3ivr_A Putative long-chain-fat 99.9 7.7E-26 2.6E-30 168.0 2.2 116 5-123 374-505 (509)
21 3c5e_A Acyl-coenzyme A synthet 99.9 2.7E-24 9.3E-29 162.0 10.5 113 5-120 432-563 (570)
22 3e7w_A D-alanine--poly(phospho 99.9 8.2E-24 2.8E-28 157.3 12.3 111 6-120 376-504 (511)
23 4gs5_A Acyl-COA synthetase (AM 99.9 1.6E-24 5.6E-29 155.3 7.7 114 3-120 225-355 (358)
24 3tsy_A Fusion protein 4-coumar 99.9 2.4E-25 8.1E-30 176.0 3.0 119 2-123 454-586 (979)
25 4gr5_A Non-ribosomal peptide s 99.9 3.6E-25 1.2E-29 166.6 2.5 112 3-117 443-569 (570)
26 2v7b_A Benzoate-coenzyme A lig 99.9 7.8E-23 2.7E-27 152.5 12.3 107 5-115 405-528 (529)
27 2vsq_A Surfactin synthetase su 99.9 1.3E-22 4.5E-27 164.2 9.3 111 3-118 835-959 (1304)
28 3ite_A SIDN siderophore synthe 99.9 2E-23 6.9E-28 156.6 2.0 114 4-120 402-544 (562)
29 4dg8_A PA1221; ANL superfamily 99.9 7.2E-22 2.5E-26 150.2 8.2 105 6-120 396-514 (620)
30 3kxw_A Saframycin MX1 syntheta 99.8 3E-21 1E-25 145.3 7.8 114 6-121 436-569 (590)
31 3gqw_A Fatty acid AMP ligase; 99.8 3.4E-21 1.2E-25 144.4 6.9 117 4-124 437-568 (576)
32 2y4o_A Phenylacetate-coenzyme 99.8 2.5E-19 8.6E-24 131.0 5.1 110 4-114 304-439 (443)
33 3qov_A Phenylacetate-coenzyme 99.7 1.3E-18 4.4E-23 127.0 6.6 106 4-112 297-430 (436)
34 2y27_A Phenylacetate-coenzyme 99.7 8.9E-19 3E-23 127.9 3.8 107 4-112 302-432 (437)
35 3lax_A Phenylacetate-coenzyme 99.4 4.1E-13 1.4E-17 81.0 6.8 83 26-110 15-101 (109)
36 3gxs_A Phenylacetate-coenzyme 99.3 4.4E-12 1.5E-16 76.6 6.4 83 26-111 15-102 (109)
37 3hhe_A Ribose-5-phosphate isom 66.4 7.2 0.00024 26.5 3.8 42 6-47 183-232 (255)
38 1m0s_A Ribose-5-phosphate isom 55.5 11 0.00039 24.8 3.2 33 15-47 161-200 (219)
39 1o8b_A Ribose 5-phosphate isom 55.3 12 0.0004 24.8 3.2 33 15-47 160-199 (219)
40 3l7o_A Ribose-5-phosphate isom 52.2 15 0.00053 24.4 3.5 37 11-47 161-204 (225)
41 3ixq_A Ribose-5-phosphate isom 51.5 12 0.00041 25.0 2.8 33 15-47 170-208 (226)
42 2cvi_A 75AA long hypothetical 49.7 29 0.00098 18.6 6.1 51 26-86 14-64 (83)
43 3kwm_A Ribose-5-phosphate isom 49.2 17 0.00056 24.2 3.2 33 15-47 166-205 (224)
44 1uj6_A Ribose 5-phosphate isom 41.9 29 0.001 22.9 3.6 34 14-47 168-208 (227)
45 1uwd_A Hypothetical protein TM 41.7 47 0.0016 18.7 5.1 29 26-54 61-89 (103)
46 1lk5_A D-ribose-5-phosphate is 40.7 24 0.00081 23.5 3.0 33 15-47 171-210 (229)
47 3uw1_A Ribose-5-phosphate isom 40.2 24 0.00082 23.7 2.9 34 14-47 176-216 (239)
48 2zbc_A 83AA long hypothetical 40.0 41 0.0014 17.6 6.0 50 26-85 14-63 (83)
49 4b2g_A GH3-1 auxin conjugating 38.3 20 0.00067 27.6 2.6 29 8-36 412-458 (609)
50 2f8m_A Ribose 5-phosphate isom 37.6 37 0.0013 22.8 3.6 40 8-47 173-221 (244)
51 4gmk_A Ribose-5-phosphate isom 36.2 35 0.0012 22.7 3.2 32 16-47 170-208 (228)
52 3lno_A Putative uncharacterize 34.2 67 0.0023 18.3 5.1 39 16-54 40-92 (108)
53 4eql_A 4-substituted benzoates 34.2 29 0.001 26.4 2.9 31 8-38 400-448 (581)
54 1xtz_A Ribose-5-phosphate isom 32.9 35 0.0012 23.2 2.9 33 15-47 199-238 (264)
55 2pjm_A Ribose-5-phosphate isom 32.0 41 0.0014 22.3 3.1 34 14-47 169-208 (226)
56 1z9i_A Epidermal growth factor 30.8 21 0.00072 18.0 1.1 18 98-115 20-38 (53)
57 4epl_A Jasmonic acid-amido syn 30.5 1.7E+02 0.0056 22.4 6.4 29 8-36 407-453 (581)
58 4e0q_A COP9 signalosome comple 27.4 12 0.00041 22.9 -0.2 7 6-12 90-96 (141)
59 3cq1_A Putative uncharacterize 26.1 92 0.0031 17.5 3.6 29 26-54 60-88 (103)
60 4dcz_A DNAJ-like protein Mg200 25.7 58 0.002 18.0 2.4 16 7-25 64-79 (92)
61 4b4t_U RPN8, 26S proteasome re 24.3 18 0.0006 25.5 0.2 8 6-13 91-98 (338)
62 1ed7_A Chitinase A1, (CHBD-CHI 20.9 68 0.0023 15.2 2.0 21 3-25 3-23 (45)
63 2okm_A Collagen adhesin; colla 20.2 35 0.0012 21.1 0.9 14 7-22 7-20 (147)
64 1vs3_A TRNA pseudouridine synt 20.2 1.2E+02 0.0041 20.3 3.7 55 28-84 30-85 (249)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.94 E-value=4.9e-27 Score=175.55 Aligned_cols=115 Identities=42% Similarity=0.747 Sum_probs=106.6
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+++|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++++++..++.++++++..++.
T Consensus 407 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 486 (536)
T 3ni2_A 407 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS 486 (536)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred ccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC
Confidence 568999999999999999999997 999999999999999999999999999999999999998888
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..+.+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++++.+
T Consensus 487 ~~~~~~l~~~l~~~l~~~~~p~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 487 QATEDEIKQYISKQVIFYKRIKR-VFF--IEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp CCCHHHHHHHHHTTSCGGGCCSE-EEE--CSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCHHHHHHHHHHhccCCccccE-EEE--EecCCCCCCCCeeHHHHHHHhcc
Confidence 88899999999999999999996 999 99999999999999999988753
No 2
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.94 E-value=6.2e-27 Score=175.18 Aligned_cols=121 Identities=26% Similarity=0.440 Sum_probs=109.8
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|..+|||+|||+|++|++|++++. +|.+||+++.++|+|.+|++++.+++..++.+++++++.+ .
T Consensus 403 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~ 481 (539)
T 1mdb_A 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-E 481 (539)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-S
T ss_pred ccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-C
Confidence 457899999999999999999997 9999999999999999999999999988889999998873 3
Q ss_pred CCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccCcCC
Q psy4975 68 SVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDVTR 126 (126)
Q Consensus 68 ~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~~~~ 126 (126)
..+.+++++++++. |+.|++|+. +++ ++.||+|++||++|++|++++...++..|.
T Consensus 482 ~~~~~~l~~~l~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~i~~~y~ 538 (539)
T 1mdb_A 482 APKAAELKAFLRERGLAAYKIPDR-VEF--VESFPQTGVGKVSKKALREAISEKLLAGFK 538 (539)
T ss_dssp CCCHHHHHHHHHHTTCCGGGSCSE-EEE--CSSCCBCTTSCBCHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHhCCCCcccCCCE-EEE--eccCCCCCCcCEeHHHHHHHHHHHHhcccc
Confidence 56788999999998 999999996 999 899999999999999999999988877763
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.94 E-value=5.9e-27 Score=174.07 Aligned_cols=115 Identities=36% Similarity=0.473 Sum_probs=108.6
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|..+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++++++..++.+.+++++.++.
T Consensus 372 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 451 (503)
T 4fuq_A 372 FRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA 451 (503)
T ss_dssp BCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred hCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC
Confidence 567999999999999999999997 999999999999999999999999999999999999998888
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
..+.+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++++..
T Consensus 452 ~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 452 TIDEAQVLHGLDGQLAKFKMPKK-VIF--VDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp CCCHHHHHHHHBTTBCGGGCCSE-EEE--ESCCCBCTTSCBCHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhhcccCCCCCE-EEE--ECCCCCCcccceeHHHHHHHHHH
Confidence 88899999999999999999996 999 89999999999999999998864
No 4
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.94 E-value=1.7e-26 Score=171.50 Aligned_cols=111 Identities=32% Similarity=0.594 Sum_probs=104.7
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++...+
T Consensus 378 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 457 (504)
T 1t5h_X 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS 457 (504)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC
T ss_pred CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC
Confidence 789999999999999999997 999999999999999999999999999999999999998777778
Q ss_pred HHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 71 AEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 71 ~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
.+++++++++ .|+.|++|+. +++ +++||+|++||++|++|++++.
T Consensus 458 ~~~l~~~~~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 ADALDTFCRSSELADFKRPKR-YFI--LDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHHHHHHHTSSCCGGGSCSE-EEE--CSCCCBCTTSCBCHHHHHHHHC
T ss_pred HHHHHHHHhhccCcccccceE-EEE--hhhCCCCCCCCEeHHHHHHHhc
Confidence 8999999998 8999999996 999 8999999999999999999874
No 5
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.94 E-value=2.6e-26 Score=172.19 Aligned_cols=119 Identities=40% Similarity=0.726 Sum_probs=109.6
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|+++++|+|++. +|.+||+++.+||+|.+|++++.+++..|+.+.+++++.++.
T Consensus 414 f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~ 493 (548)
T 2d1s_A 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493 (548)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred ccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC
Confidence 457899999999999999999997 999999999999999999999999998899999999998777
Q ss_pred CCCHHHHHHHHHhhcCCCCCCC-ccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLS-GGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~-~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
..+.+++++++++.|+.|++|+ . +.+ ++.+|+|++||++|++|++++...++.
T Consensus 494 ~~~~~~l~~~~~~~l~~~~~p~~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 494 NMTEKEVMDYVASQVSNAKRLRGG-VRF--VDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCTTC-EEE--CSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred CCCHHHHHHHHHHhcccccccccc-EEE--ccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 7788999999999999999999 6 888 899999999999999999999877654
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.94 E-value=5.2e-26 Score=169.45 Aligned_cols=115 Identities=30% Similarity=0.539 Sum_probs=105.7
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|+|++. +|.+||+++.++|+|.+|++++.+++..++.+.+++ +.++...
T Consensus 388 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~ 466 (517)
T 3r44_A 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEV 466 (517)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTC
T ss_pred cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCC
Confidence 3799999999999999999997 999999999999999999999999999888888888 5556677
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
+.+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++++....+
T Consensus 467 ~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 467 SEQQIVEYCGTRLARYKLPKK-VIF--AEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp CHHHHHHHHHHHSCGGGSCSE-EEE--CSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred CHHHHHHHHHHhCCCCCCCCE-EEE--ECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 889999999999999999996 999 99999999999999999999987653
No 7
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.93 E-value=6.2e-26 Score=168.71 Aligned_cols=111 Identities=33% Similarity=0.549 Sum_probs=91.0
Q ss_pred CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 66 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 66 (126)
|..+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..++.+++++++.+.
T Consensus 378 f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~ 457 (505)
T 3nyq_A 378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP 457 (505)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST
T ss_pred hcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC
Confidence 567999999999999999999997 99999999999999999999999999999999999998763
Q ss_pred -CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975 67 -SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115 (126)
Q Consensus 67 -~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~ 115 (126)
...+.+++++++++.|++|++|+. +++ ++.||+|++||++|++|++
T Consensus 458 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 458 AAPPALGTLADHVAARLAPHKRPRV-VRY--LDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TSCCCHHHHHHHHHHHTCGGGSCSE-EEE--CSCCCC-------------
T ss_pred CCCCCHHHHHHHHHhhCCCCcCccE-EEE--ECCCCCCCCcCeeHHhhcc
Confidence 456788999999999999999995 999 9999999999999999986
No 8
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.93 E-value=4.3e-26 Score=170.89 Aligned_cols=116 Identities=35% Similarity=0.607 Sum_probs=77.1
Q ss_pred CCC--ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC-
Q psy4975 4 DDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN- 66 (126)
Q Consensus 4 ~~g--~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~- 66 (126)
.+| ||+|||+|++|++|+|++. +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++
T Consensus 412 ~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 491 (549)
T 3g7s_A 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY 491 (549)
T ss_dssp TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT
T ss_pred CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc
Confidence 556 9999999999999999997 99999999999999999999999999999999999999876
Q ss_pred -CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 67 -SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 67 -~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
...+.+++++++++.|+.|++|+. +.+ ++.||+|++||++|++|++.+..+..
T Consensus 492 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~~~ 545 (549)
T 3g7s_A 492 RGKVDEEDIIEWVRERISGYKRVRE-VEF--VEELPRTASGKLLRRLLREKEAEGHH 545 (549)
T ss_dssp TTSCCHHHHHHHHHTTCC-----CC-CCE--EEECC---------------------
T ss_pred cCcCCHHHHHHHHHHhccCcccceE-EEE--eccCCCCCCcCEeHHHHHHHhhcccc
Confidence 567789999999999999999996 888 89999999999999999999887654
No 9
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.93 E-value=2.6e-25 Score=169.82 Aligned_cols=114 Identities=29% Similarity=0.417 Sum_probs=105.3
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|++|++|+|+|+ +|.+||+++.+||+|.+|+|++.+++..++.++++|++.++...
T Consensus 492 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~ 571 (652)
T 1pg4_A 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP 571 (652)
T ss_dssp STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred CCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC
Confidence 4789999999999999999997 99999999999999999999999999889999999999876544
Q ss_pred C---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 T---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 ~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. .+++++++++.|++|++|+. +++ ++.||+|++||++|+.|++++.+.
T Consensus 572 ~~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 572 SPELYAEVRNWVRKEIGPLATPDV-LHW--TDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp CHHHHHHHHHHHHHHTCGGGCCSE-EEE--CSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCCcCCeE-EEE--cCCCCCCCCccchHHHHHHHHhCC
Confidence 4 47899999999999999995 999 999999999999999999999875
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.93 E-value=1.2e-25 Score=169.80 Aligned_cols=112 Identities=30% Similarity=0.542 Sum_probs=85.1
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 70 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 70 (126)
+|||+|||+|++|++|+|+|+ +|.+||++|.++|+|.+|++++++++..++.+.+++++.++....
T Consensus 451 ~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~ 530 (580)
T 3etc_A 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPS 530 (580)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCC
Confidence 789999999999999999997 999999999999999999999999999999999999998775444
Q ss_pred ---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975 71 ---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM 119 (126)
Q Consensus 71 ---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~ 119 (126)
.+++++++++.|++|++|+. +.+ ++.||+|++||++|++|++++++
T Consensus 531 ~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 531 DSLKNELQDHVKNVTAPYKYPRI-IEF--VPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCSE-EEE--ECC--------------------
T ss_pred HHHHHHHHHHHHhhCCCccCCeE-EEE--eCCCCCCCCcCCcHHHHHhHhhc
Confidence 36899999999999999995 999 89999999999999999998764
No 11
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.92 E-value=3.9e-26 Score=170.90 Aligned_cols=117 Identities=32% Similarity=0.457 Sum_probs=68.5
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|..+|||+|||+|++|++|++++. +|.+||+++.+||+|.+|++++.+++.+++.+.+++++. +.
T Consensus 408 f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~ 486 (541)
T 1v25_A 408 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GE 486 (541)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred ccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CC
Confidence 456899999999999999999997 999999999999999999999999999899999998876 33
Q ss_pred CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975 68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD 122 (126)
Q Consensus 68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~ 122 (126)
..+.+++++++++ .|+.|++|+. +++ ++.+|+|++||++|++|++++....+
T Consensus 487 ~~~~~~l~~~~~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 487 KPTPEELNEHLLKAGFAKWQLPDA-YVF--AEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp --------------CCCTTTSCSB-C----------------CCTTHHHHSTTSSC
T ss_pred CCCHHHHHHHHHhccCccccCCcE-EEE--eCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 4556789999999 8999999996 888 89999999999999999999876554
No 12
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.92 E-value=8.5e-25 Score=167.29 Aligned_cols=114 Identities=32% Similarity=0.410 Sum_probs=100.4
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS- 68 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 68 (126)
.+|||+|||+|++|++|+++|+ +|.+||+++.++|+|.+|+|++.+++..++.++++|+++++..
T Consensus 501 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~ 580 (663)
T 1ry2_A 501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSW 580 (663)
T ss_dssp STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----
T ss_pred CCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcc
Confidence 3799999999999999999997 9999999999999999999999999888999999999876643
Q ss_pred --C-------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 69 --V-------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 69 --~-------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. ..+++++++++.|++|++|+. +++ ++.||+|++||++|+.|++++.+.
T Consensus 581 ~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 581 STATDDELQDIKKHLVFTVRKDIGPFAAPKL-IIL--VDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp -------CCSHHHHHHHHHHHHTCTTTSCSE-EEE--CSCCCBCTTSCBCHHHHHHSCC--
T ss_pred ccccchhHHHHHHHHHHHHHHhCCCCcCCeE-EEE--cCCCCCCCccCchHHHHHHHHcCC
Confidence 1 157899999999999999996 999 999999999999999999988765
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.92 E-value=9.9e-25 Score=162.17 Aligned_cols=114 Identities=25% Similarity=0.258 Sum_probs=102.6
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+++|||+|||+|++ ++|++++. +|.+||+.+.++|+|.+|++++++++..++.+.+++++.+...
T Consensus 374 ~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~ 452 (512)
T 3fce_A 374 DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF 452 (512)
T ss_dssp TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC
T ss_pred CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc
Confidence 56789999999999 69999997 9999999999999999999999999888889999999887654
Q ss_pred CCH----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 69 VTA----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 69 ~~~----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
.+. +++++++++.|+.|++|+. +++ ++.+|+|++||++|++|.+.+...
T Consensus 453 ~~~~~~~~~l~~~l~~~L~~~~~P~~-~~~--~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 453 EKEFKLTSAIKKELNERLPNYMIPRK-FMY--QSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp SSHHHHHHHHHHHHHTTSCGGGSCSE-EEE--CSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred cchhhhHHHHHHHHHhhCchhcCCeE-EEE--ecccCCCCCcChHHHHHHhhhhhc
Confidence 443 5788999999999999995 999 999999999999999999998864
No 14
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.92 E-value=8.6e-25 Score=162.04 Aligned_cols=113 Identities=25% Similarity=0.485 Sum_probs=85.9
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..++.+.++++.. ...
T Consensus 373 ~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~ 450 (501)
T 3ipl_A 373 ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDI 450 (501)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCC
T ss_pred cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCC
Confidence 3799999999999999999997 999999999999999999999999999898888988864 346
Q ss_pred CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
+.+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++....+.
T Consensus 451 ~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 451 SKAQLIAYLSKHLAKYKVPKH-FEK--VDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp CHHHHHHHHHHHSCGGGSCSE-EEE--CSSCC--------------------
T ss_pred CHHHHHHHHHhhCccccCCCE-EEE--ecccCCCCCCCEeHHHHhhcccccc
Confidence 789999999999999999996 999 9999999999999999999776543
No 15
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.92 E-value=6.7e-25 Score=163.28 Aligned_cols=116 Identities=20% Similarity=0.143 Sum_probs=98.5
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCC-CCCeeEEEEEeCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDV-FGELPAAVVVPKPNS 67 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 67 (126)
+++|||+|||+|++|++|++++. +|.+||+++.++|+|.+|++++..++. .++.+++++++.++.
T Consensus 377 ~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~ 456 (521)
T 3l8c_A 377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV 456 (521)
T ss_dssp TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence 56789999999999999999997 999999999999999999999887655 457889999988764
Q ss_pred CCC-------HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 68 SVT-------AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 68 ~~~-------~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
... .+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++.+....
T Consensus 457 ~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 457 KERFDRELELTKAIKASVKDHMMSYMMPSK-FLY--RDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp GGGCSSHHHHHHHHHHHSGGGSCGGGSCSE-EEE--CSSCCBCTTSSBCHHHHHHHTC---
T ss_pred ccccccchhhHHHHHHHHHhhCccccCCeE-EEE--ecccCCCCCcCccHHHHhhhhhcCC
Confidence 321 46899999999999999995 999 9999999999999999999987654
No 16
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.91 E-value=4.4e-24 Score=162.01 Aligned_cols=114 Identities=28% Similarity=0.434 Sum_probs=104.2
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|+++++|+++++ +|.+||+++.++|+|.+|++++.+++..++.+.++++..+
T Consensus 407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-- 484 (617)
T 3rg2_A 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE-- 484 (617)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence 567999999999999999999997 9999999999999999999999999988889999998875
Q ss_pred CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+..++++++++ .|+.|++|+. +++ ++.||+|++||++|++|++++...
T Consensus 485 ~~~~~~l~~~l~~~~lp~~~vP~~-~~~--v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 485 PLRAVQVRRFLREQGIAEFKLPDR-VEC--VDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp CCCHHHHHHHHHTTTCCGGGSCSE-EEE--CSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCccccCCcE-EEE--ecccCCCCCCCCcHHHHHHHHhcc
Confidence 4667899999998 6999999996 999 999999999999999999987653
No 17
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.91 E-value=1.7e-24 Score=162.96 Aligned_cols=111 Identities=26% Similarity=0.297 Sum_probs=100.8
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+++|||+|||+|++|++|+|+|. +|.+||+++.++|+|.+|++++.+++..++.+++++++.. .
T Consensus 404 ~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~ 481 (563)
T 1amu_A 404 PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--H 481 (563)
T ss_dssp TTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--C
T ss_pred CCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--C
Confidence 35679999999999999999997 9999999999999999999999999888888999998753 4
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
.+.+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++...
T Consensus 482 ~~~~~l~~~l~~~L~~y~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 482 IPLEQLRQFSSEELPTYMIPSY-FIQ--LDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp CCHHHHHHHHHHHSCGGGSCSE-EEE--CSSCCBCTTSSBCGGGSCCCCC
T ss_pred CCHHHHHHHHHhhCchhhCCcE-EEE--ecccCCCCCcChhHHhcCCccc
Confidence 5678999999999999999996 999 9999999999999999987643
No 18
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.91 E-value=7.6e-26 Score=169.45 Aligned_cols=115 Identities=27% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+++|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..|+.+.+++++.+ .
T Consensus 412 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~ 490 (544)
T 3o83_A 412 FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-P 490 (544)
T ss_dssp BCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------------------------
T ss_pred CCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-C
Confidence 567999999999999999999997 9999999999999999999999999999999999998765 3
Q ss_pred CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+...+++++.+ .|+.|++|+. +.+ ++.||+|++||++|++|++++...
T Consensus 491 ~~~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 491 ELKAVVLRRHLMELGIAQYKLPDQ-IKL--IESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ------------------------------------------------------
T ss_pred CCCHHHHHHHHHhCCCCcccCCcE-EEE--eccCCCCCCCCCcHHHHHHHHhhc
Confidence 4556788899988 7999999996 999 899999999999999999988764
No 19
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.91 E-value=7.5e-26 Score=169.59 Aligned_cols=118 Identities=43% Similarity=0.793 Sum_probs=22.3
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+.+|||+|||+|+++++|+|++. +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++.
T Consensus 412 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~ 491 (550)
T 3rix_A 412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491 (550)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEC--------------------------------------------------------
T ss_pred cCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCC
Confidence 468999999999999999999997 999999999999999999999999999999999999988777
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
..+.+++.+++++.++++++|...+++ ++.||+|++||++|++|++++....
T Consensus 492 ~~~~~~l~~~~~~~l~~~~~~~~~i~~--v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 492 TMTEKEIVDYVASQVTTAKKLRGGVVF--VDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp ------------------------------------------------------
T ss_pred CCCHHHHHHHHHHhcccccccCCceEE--EeecCCCCCcceeHHHHHHHHHhhc
Confidence 777889999999999998766534888 8999999999999999999987644
No 20
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.91 E-value=7.7e-26 Score=168.02 Aligned_cols=116 Identities=30% Similarity=0.555 Sum_probs=19.9
Q ss_pred CCceecCceEEEcCCCcEEEe----------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII----------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~----------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++..
T Consensus 374 ~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 453 (509)
T 3ivr_A 374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES 453 (509)
T ss_dssp GGSEEEEEEEEECTTSCEEEEEEC--------------------------------------------------------
T ss_pred cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC
Confidence 799999999999999999987 8999999999999999999999999998999999999887777
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
.+.+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++++......
T Consensus 454 ~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKidr~~Lr~~~~~~~~~ 505 (509)
T 3ivr_A 454 IAADALAEFVASLIARYKKPKH-VVF--VEALPKDAKGAIDRAAVKTAHGQEGHH 505 (509)
T ss_dssp -------------------------------------------------------
T ss_pred CCHHHHHHHHHhhCcccCCCcE-EEE--ecCCCCCCCCCccHHHHHHHHhhcccc
Confidence 7788999999999999999996 888 899999999999999999998876543
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.91 E-value=2.7e-24 Score=161.99 Aligned_cols=113 Identities=27% Similarity=0.390 Sum_probs=101.3
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-C
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-V 69 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 69 (126)
+|||+|||+|++|++|+|++. +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++.. .
T Consensus 432 ~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 511 (570)
T 3c5e_A 432 GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH 511 (570)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS
T ss_pred CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc
Confidence 699999999999999999997 9999999999999999999999999988899999999876531 1
Q ss_pred ----CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 70 ----TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 70 ----~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+++++++++.|+.|++|+. +.+ ++.||+|++||++|++|++.+...
T Consensus 512 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 512 DPEQLTKELQQHVKSVTAPYKYPRK-IEF--VLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp CHHHHHHHHHHHHHHHSCGGGSCSE-EEE--ESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred chHHHHHHHHHHHHhhCccccCCcE-EEE--eccCCCCCCcCCcHHHHHHHHHhh
Confidence 246889999999999999996 999 899999999999999999988654
No 22
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.91 E-value=8.2e-24 Score=157.30 Aligned_cols=111 Identities=24% Similarity=0.248 Sum_probs=100.4
Q ss_pred CceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCH
Q psy4975 6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA 71 (126)
Q Consensus 6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 71 (126)
+||+|||+|++ ++|++++. +|.+||+++.++|+|.+|++++.+++..++.+++++++.++.....
T Consensus 376 ~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~ 454 (511)
T 3e7w_A 376 WAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKE 454 (511)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSH
T ss_pred EEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccch
Confidence 38999999999 58999997 9999999999999999999999998888899999999987655443
Q ss_pred ----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 72 ----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 72 ----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
+++++++++.|+.|++|+. +++ ++.+|+|++||++|++|++.+...
T Consensus 455 ~~~~~~l~~~l~~~L~~~~~P~~-~~~--v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 455 FQLTSAIKKELAASLPAYMIPRK-FIY--QDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp HHHHHHHHHHHHHHSCGGGSCSE-EEE--CSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCchhhCCee-EEE--eccCCCCCCcCccHHHHHhHHhhh
Confidence 6788999999999999996 999 999999999999999999998764
No 23
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.91 E-value=1.6e-24 Score=155.32 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=93.9
Q ss_pred CCCCceecCceEEEcCCCcEEEe-------------ChHHHHHHHh---cCCCcceEEEE-eeecCCCCCeeEEEEEeCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII-------------SPCELESIFR---QHPDVEDVAVI-GIPHDVFGELPAAVVVPKP 65 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~-------------~~~~iE~~l~---~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~ 65 (126)
..+|||+|||+|++|++|.+++- +|.+||+.+. +||.|.+++++ +.+++..|+.++++++...
T Consensus 225 ~~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~ 304 (358)
T 4gs5_A 225 TNGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM 304 (358)
T ss_dssp GTTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC
T ss_pred ccCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC
Confidence 46899999999999988844432 9999998774 57999987765 6778888888888887543
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 66 NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 66 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
. ....+++++++++.|+.|++|+. +++ +++||+|++||++|++|++++...
T Consensus 305 ~-~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 305 P-EALTERLTAEIRSRVSTYENPKH-IYF--AKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp C-HHHHHHHHHHHHHHSCGGGSCSC-EEE--ESSCCBCTTSCBCHHHHHHHTC--
T ss_pred C-CcCHHHHHHHHHhhCCCCCCceE-EEE--ECCcCCCCCCChhHHHHHHHhhhh
Confidence 3 34457899999999999999996 999 899999999999999999987654
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.90 E-value=2.4e-25 Score=176.03 Aligned_cols=119 Identities=42% Similarity=0.704 Sum_probs=22.4
Q ss_pred CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 67 (126)
Q Consensus 2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 67 (126)
|+++|||+|||+|+++++|+|+++ +|.+||++|.++|+|.++++++.+++..++.+++++++.++.
T Consensus 454 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~ 533 (979)
T 3tsy_A 454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS 533 (979)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------------------
T ss_pred ccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCC
Confidence 568999999999999999999997 999999999999999999999999988899999999987776
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD 123 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~ 123 (126)
..+.+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++++......
T Consensus 534 ~~~~~~l~~~l~~~l~~~~~p~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~~ 586 (979)
T 3tsy_A 534 ELSEDDVKQFVSKQVVFYKRINK-VFF--TESIPKAPSGKILRKDLRAKLANGLGS 586 (979)
T ss_dssp --------------------------------------------------------
T ss_pred CCCHHHHHHHHHHhcccccCCeE-EEE--eCCcCcCCCCCeeHHHHHHHHHhhcCC
Confidence 67778999999999999999996 888 899999999999999999998765543
No 25
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.90 E-value=3.6e-25 Score=166.56 Aligned_cols=112 Identities=27% Similarity=0.350 Sum_probs=20.9
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC-C
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN-S 67 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 67 (126)
+++|||+|||+|++|++|+|+|+ +|.+||++|.++|+|.+|++++.+++..++.+++++++... .
T Consensus 443 ~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~ 522 (570)
T 4gr5_A 443 GGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA 522 (570)
T ss_dssp SCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------------------
T ss_pred CCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC
Confidence 34689999999999999999997 99999999999999999999999888888889998887644 3
Q ss_pred CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975 68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK 117 (126)
Q Consensus 68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~ 117 (126)
..+.+++++++++.|+.|++|.. +++ ++.||+|++||++|++|++..
T Consensus 523 ~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 523 PPDAAELRRHVAEALPAYMVPVE-CVP--VDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp --------------------------------------------------
T ss_pred CcCHHHHHHHHHhhCccccCCcE-EEE--cccCCCCCCcCcchHhhhccC
Confidence 45668899999999999999996 888 899999999999999998753
No 26
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.89 E-value=7.8e-23 Score=152.47 Aligned_cols=107 Identities=36% Similarity=0.534 Sum_probs=95.7
Q ss_pred CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC-
Q psy4975 5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV- 69 (126)
Q Consensus 5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 69 (126)
+|||+|||+|+++++|++++. +|.+||+++.++|+|.+|++++. ++..++.+.+++++.++...
T Consensus 405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~ 483 (529)
T 2v7b_A 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS 483 (529)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC
T ss_pred cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc
Confidence 689999999999999999997 99999999999999999999999 66667788899988765432
Q ss_pred --CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975 70 --TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115 (126)
Q Consensus 70 --~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~ 115 (126)
..+++++++++.|+.|++|+. +++ ++.||+|++||++|++|++
T Consensus 484 ~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 484 EILAEELKAFVKDRLAPHKYPRD-IVF--VDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp HHHHHHHHHHHHTTSCTTTSCSE-EEE--ESCCCBCTTSCBCHHHHHC
T ss_pred hhHHHHHHHHHHhhcchhhCCeE-EEE--eccCCCCCccchhHHhHhh
Confidence 236899999999999999996 888 8999999999999999975
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.87 E-value=1.3e-22 Score=164.21 Aligned_cols=111 Identities=28% Similarity=0.353 Sum_probs=100.2
Q ss_pred CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
++++||+|||+|+++++|.++++ +|.+||+++.++|+|.+|+|++.+++..++.++++++... .
T Consensus 835 ~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~ 912 (1304)
T 2vsq_A 835 PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--Q 912 (1304)
T ss_dssp TTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--S
T ss_pred CCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--C
Confidence 35679999999999999999997 9999999999999999999999988888889999998754 4
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975 69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV 118 (126)
Q Consensus 69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~ 118 (126)
.+.+++++++++.||.||+|.. +++ ++.||+|++||++|++|.+...
T Consensus 913 ~~~~~l~~~l~~~Lp~ymvP~~-~~~--l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 913 LSAEDVKAHLKKQLPAYMVPQT-FTF--LDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp SCHHHHHHHHHHHSCGGGSCSE-EEE--ESCCCCCSSCSSCCSCCCCCCG
T ss_pred CCHHHHHHHHHHhChHhhhccE-EEE--ecccCCCCCcccCHhhcCCcch
Confidence 5678999999999999999996 888 8999999999999999876543
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.87 E-value=2e-23 Score=156.61 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=20.0
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcC-CCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQH-PDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 68 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 68 (126)
+++||+|||+|++|++|+|+|. +|.+||++|.++ +.+.++++++..++..++..++.++...+..
T Consensus 402 g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~ 481 (562)
T 3ite_A 402 GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAA 481 (562)
T ss_dssp TEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred CCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccc
Confidence 3459999999999999999997 999999999998 7788999998888887766665555443322
Q ss_pred C-------------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCC-CCCccchHHHHHHHhcc
Q psy4975 69 V-------------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRT-MSGKVKRKDLNETKVMR 120 (126)
Q Consensus 69 ~-------------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t-~~GKv~r~~l~~~~~~~ 120 (126)
. ..+++++++++.|+.|++|+. +++ ++.||+| ++||++|++|++++...
T Consensus 482 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~-i~~--v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 482 VRGELRWINENYKEINNSLRQACEQTLPAYMVPDF-IIP--ISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ------------------------------------------------------------------
T ss_pred ccccccccccchhhHHHHHHHHHHhhCCcccCCcE-EEE--eccCCCCCCCCcchHHHHHHHHhcc
Confidence 1 124899999999999999996 999 9999998 89999999999998753
No 29
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.86 E-value=7.2e-22 Score=150.21 Aligned_cols=105 Identities=24% Similarity=0.203 Sum_probs=84.6
Q ss_pred CceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCH
Q psy4975 6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA 71 (126)
Q Consensus 6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 71 (126)
+||+|||+|+++++|+++++ +|.+||+++.++|+|.+|++++.+++..+..+.+++. ..
T Consensus 396 ~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~-~~------ 468 (620)
T 4dg8_A 396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTG-KA------ 468 (620)
T ss_dssp EEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEE-CT------
T ss_pred eEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEec-Ch------
Confidence 79999999999999999997 9999999999999999999999888765544444443 21
Q ss_pred HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975 72 EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR 120 (126)
Q Consensus 72 ~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~ 120 (126)
..+.+.+.+.|+.|++|+. +++ ++.||+|++||++|++|++++...
T Consensus 469 ~~~~~~l~~~Lp~y~~P~~-~~~--v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 469 DASPQALLRQLPTWQRPHA-CVR--VEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp TCCCHHHHHHSCGGGSCSE-EEE--CSSCCCC----CCHHHHHHHTCSC
T ss_pred HHHHHHHHHhChhhcCCcE-EEE--ECcCCCCcccCHhHHHHhhccccc
Confidence 1234567788999999996 999 999999999999999999887653
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.84 E-value=3e-21 Score=145.29 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=95.1
Q ss_pred CceecCceEEEcCCCcEEEe--------------ChHHHHHHH-hcCCCcc--eEEEEeeecCCCCCeeEEEEEeCCCC-
Q psy4975 6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIF-RQHPDVE--DVAVIGIPHDVFGELPAAVVVPKPNS- 67 (126)
Q Consensus 6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l-~~~~~v~--~~~~~~~~~~~~~~~~~~~v~~~~~~- 67 (126)
+||+|||+|+++ +|+|+|. +|.+||+++ ..+|.|. +|++++++++. ++.+.+++++.++.
T Consensus 436 ~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~ 513 (590)
T 3kxw_A 436 IYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM 513 (590)
T ss_dssp CBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC
T ss_pred cEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc
Confidence 399999999999 9999997 899999999 7889998 89999988876 66777888777653
Q ss_pred -CCCHHHHHHHHHhhcCC-CCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975 68 -SVTAEEVKQFVEDQVNP-SKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH 121 (126)
Q Consensus 68 -~~~~~~~~~~l~~~l~~-~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~ 121 (126)
..+.+++.+++++.++. ++.|...+.+++++.||+|++||++|++|++++....
T Consensus 514 ~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~ 569 (590)
T 3kxw_A 514 DDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKT 569 (590)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCC
Confidence 34557889999998885 7888622677567899999999999999999997643
No 31
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.83 E-value=3.4e-21 Score=144.42 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=94.7
Q ss_pred CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975 4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV 69 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (126)
.+|||+|||+|++ ++|+++++ +|.+||+++.+||+|.+++++++.++.. ...++++.......
T Consensus 437 ~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~~~~ 513 (576)
T 3gqw_A 437 ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRISDEE 513 (576)
T ss_dssp HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCCCHH
T ss_pred CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCc--cEEEEEEEecCchh
Confidence 4799999999999 69999997 9999999999999999988887776642 34445544444344
Q ss_pred CHHHHHHHHHhhc-CCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccCc
Q psy4975 70 TAEEVKQFVEDQV-NPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDV 124 (126)
Q Consensus 70 ~~~~~~~~l~~~l-~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~~ 124 (126)
...++.+.+.+.+ +.+++|.. +.+++.+.||+|++||++|++|++++.......
T Consensus 514 ~~~~l~~~l~~~l~~~~~~p~~-i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~ 568 (576)
T 3gqw_A 514 RRGQLIHALAARIQSEFGVTAA-IDLLPPHSIPRTSSGKPARAEAKKRYQKAYAAS 568 (576)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEE-EEEECSSCSCBCTTSSBCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhCCcee-EEEECCCCcCcCCCccchHHHHHHHHHHHhhhc
Confidence 4568888888888 78999995 888555699999999999999999998765543
No 32
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.77 E-value=2.5e-19 Score=131.05 Aligned_cols=110 Identities=20% Similarity=0.156 Sum_probs=90.8
Q ss_pred CCCceecCceEEEcCC-CcE-----EEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEe
Q psy4975 4 DDGWLHTGDLAYRLPD-GTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 63 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~-g~l-----~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 63 (126)
.++||+|||+|+++++ |++ ++. +|.+||+++.++|+|.++++++++++..++.+.+++++
T Consensus 304 p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~ 383 (443)
T 2y4o_A 304 PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVEL 383 (443)
T ss_dssp CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEE
Confidence 3689999999999999 986 454 99999999999999999999988887767788888888
Q ss_pred CC--C---CCCCHHHHHHHHHhhcCCC-CCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975 64 KP--N---SSVTAEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVKRKDLN 114 (126)
Q Consensus 64 ~~--~---~~~~~~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp~t~~GKv~r~~l~ 114 (126)
.+ + ...+.+++++++++.|+.+ ..|.. +.++.++.||+|++||++|...+
T Consensus 384 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 384 RSEAAASVTDGERAALARELQHRIKTMVGVSSG-VTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCE-EEEECTTCSCCCTTSCCCSEEEC
T ss_pred CCcccccchhhHHHHHHHHHHHHHHHHhCCceE-EEEeCCCcccCccCCcceEEEec
Confidence 75 2 1234478999999999887 48885 88855679999999999997543
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.75 E-value=1.3e-18 Score=127.04 Aligned_cols=106 Identities=21% Similarity=0.164 Sum_probs=83.9
Q ss_pred CCCceecCceEEEcCCC------c---EEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEE
Q psy4975 4 DDGWLHTGDLAYRLPDG------T---HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 60 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~~g------~---l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ 60 (126)
.++||+|||+|+++++| + +++. +|.+||+++.++|+|.++++++..++..++.+.++
T Consensus 297 ~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~ 376 (436)
T 3qov_A 297 PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVE 376 (436)
T ss_dssp CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEE
T ss_pred eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEE
Confidence 47899999999999998 5 4554 99999999999999999999999988888899999
Q ss_pred EEeCCCCCCC----HHHHHHHHHhhcCCC-CCCCccEEEeecCcccCCCCCccchHH
Q psy4975 61 VVPKPNSSVT----AEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVKRKD 112 (126)
Q Consensus 61 v~~~~~~~~~----~~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp~t~~GKv~r~~ 112 (126)
+++. +...+ .+++.+.+++.|+.+ +.|.. +.++..+.||+|+ ||++|..
T Consensus 377 v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 377 VELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPK-VKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCE-EEEECTTCCC--------CEE
T ss_pred EEEc-CccccchhhHHHHHHHHHHHHHHhcCCceE-EEEeCCCcccCcC-CcceEEE
Confidence 9998 54444 578899999999888 89985 8884444999999 9999864
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.73 E-value=8.9e-19 Score=127.95 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=89.6
Q ss_pred CCCceecCceEEEcC-CCcE-----EEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEe
Q psy4975 4 DDGWLHTGDLAYRLP-DGTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 63 (126)
Q Consensus 4 ~~g~~~TGD~~~~~~-~g~l-----~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 63 (126)
.++||+|||+|++++ +|++ ++. +|.+||+++.++|+|.++++++++++..++.+.+++++
T Consensus 302 ~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 302 PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECB
T ss_pred hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEE
Confidence 368999999999998 6985 554 99999999999999999999888887777888999988
Q ss_pred CCCCC---CCHHHHHHHHHhhcCCC-CCCCccEEEeecCcccCCCCCccchHH
Q psy4975 64 KPNSS---VTAEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVKRKD 112 (126)
Q Consensus 64 ~~~~~---~~~~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp~t~~GKv~r~~ 112 (126)
.++.. .+.+++.+++++.|+.+ .+|.. +.++.++.||+|+ ||++|..
T Consensus 382 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 382 CPETAPDTAAIQVAKQALAYDIKSLIGVTAV-INVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHHHHHHCCCEE-EEECCTTCSCCCS-SSCCCEE
T ss_pred CCCccchhhhHHHHHHHHHHHHHHhcCCceE-EEEeCCCCccCCC-CcceEEE
Confidence 76543 23478999999999988 58885 8885557999999 9999874
No 35
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.42 E-value=4.1e-13 Score=81.04 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=62.3
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCH---HHHHHHHHhhcCCC-CCCCccEEEeecCccc
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA---EEVKQFVEDQVNPS-KRLSGGVFLCSFDFIP 101 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp 101 (126)
+|.+||+++.++|+|.++++++++++.+++.+.++++..++...+. +++.+.+++.+..+ .+|.. +.+++.++||
T Consensus 15 ~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~-v~~v~~~~lP 93 (109)
T 3lax_A 15 FPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPR-VKLVPKGALP 93 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCE-EEEECTTCSC
T ss_pred CHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccc-eEEEcCCeec
Confidence 9999999999999999999999999998999999998887655443 44555555555432 24544 7776677999
Q ss_pred CCCCCccch
Q psy4975 102 RTMSGKVKR 110 (126)
Q Consensus 102 ~t~~GKv~r 110 (126)
+| +||++|
T Consensus 94 rt-sGKi~R 101 (109)
T 3lax_A 94 KS-EGKAVR 101 (109)
T ss_dssp CC----CCC
T ss_pred CC-CCCcch
Confidence 98 699987
No 36
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.31 E-value=4.4e-12 Score=76.58 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=59.0
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC----CHHHHHHHHHhhcC-CCCCCCccEEEeecCcc
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV----TAEEVKQFVEDQVN-PSKRLSGGVFLCSFDFI 100 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~l~~~l~-~~~~p~~~~~~~~~~~l 100 (126)
+|.+||+++.++|+|.++++++++++.+++.+.+++++ ++... +.+++.+.+++.+. .+..|.. +.+++..+|
T Consensus 15 ~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~-v~~v~~~~l 92 (109)
T 3gxs_A 15 FPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILVTPR-VKLVPKGAL 92 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSSCCE-EEEECTTCS
T ss_pred CHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCCceE-EEEECCCCc
Confidence 89999999999999998888888887777888888888 55321 33455666655553 2344444 888555599
Q ss_pred cCCCCCccchH
Q psy4975 101 PRTMSGKVKRK 111 (126)
Q Consensus 101 p~t~~GKv~r~ 111 (126)
|+| +||++|.
T Consensus 93 Prt-sGKi~R~ 102 (109)
T 3gxs_A 93 PKS-EGKAVRV 102 (109)
T ss_dssp CCC----CCCE
T ss_pred cCC-CCceEEE
Confidence 999 9999874
No 37
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=66.41 E-value=7.2 Score=26.54 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=32.2
Q ss_pred Cceec-CceEEEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 6 GWLHT-GDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 6 g~~~T-GD~~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
-|++. +|-.++.++|++.+- .|.+++..|.++|+|-+.-++.
T Consensus 183 ~~lR~~~~gp~vTDnGN~IlD~~f~~i~dp~~l~~~l~~i~GVVe~GLF~ 232 (255)
T 3hhe_A 183 ITLRMNGDDPFKTDGGHFIFDAFWGRILQPKLLSEALLAIPGVVEHGLFL 232 (255)
T ss_dssp EEECEETTEECCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEEeeCCCCcEEcCCCCEEEEeeCCCcCCHHHHHHHHhcCCCEeeecccc
Confidence 35665 555667778877765 8999999999999988776664
No 38
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=55.54 E-value=11 Score=24.84 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=27.1
Q ss_pred EEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 15 YRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 15 ~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
++.++|++.+- .|.+++..|.+.|||-+.-++.
T Consensus 161 ~vTdnGn~IlD~~~~~i~~p~~l~~~l~~i~GVve~GlF~ 200 (219)
T 1m0s_A 161 VVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGIFA 200 (219)
T ss_dssp CCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eEcCCCCEEEEecCCCCCCHHHHHHHHhcCCCeeeeccEe
Confidence 56778877664 7999999999999998877764
No 39
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=55.28 E-value=12 Score=24.81 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=27.1
Q ss_pred EEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 15 YRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 15 ~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
++.++|++.+- .|.+++..|.+.|||-+.-++.
T Consensus 160 ~vTdnGn~IlD~~~~~i~~p~~l~~~l~~i~GVve~GlF~ 199 (219)
T 1o8b_A 160 VVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFA 199 (219)
T ss_dssp CCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eEeCCCCEEEEeeCCCCCCHHHHHHHHhcCCCcceeeeEe
Confidence 56778877664 7999999999999998877764
No 40
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=52.24 E-value=15 Score=24.38 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=29.1
Q ss_pred CceEEEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 11 GDLAYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 11 GD~~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
+|-.++.++|++.+- .|.+++..|.++|+|-+.-+|.
T Consensus 161 ~~~p~vTDnGn~IlD~~f~~i~~p~~l~~~l~~i~GVVe~GlF~ 204 (225)
T 3l7o_A 161 DGVRFVTDMKNFIIDLDLGSIPDPIAFGNMLDHQVGVVEHGLFN 204 (225)
T ss_dssp TTEECCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCCcEEcCCCCEEEEecCCCCCCHHHHHHHHhcCCCeeeeeeec
Confidence 344567778877765 8999999999999988776664
No 41
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=51.49 E-value=12 Score=24.98 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=26.9
Q ss_pred EEcCCCcEEEe------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 15 YRLPDGTHFII------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 15 ~~~~~g~l~~~------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
++.++|++.+- .|.++|..|.++|+|-+.-+|.
T Consensus 170 ~vTDnGN~IlD~~~~i~dp~~l~~~L~~ipGVVe~GlF~ 208 (226)
T 3ixq_A 170 VITDNGNMIIDVFMNIDDAIELEKEINNIPGVVENGIFT 208 (226)
T ss_dssp CBCTTSCEEEEEECCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred eEecCCCEEEEecCCCCCHHHHHHHHhCCCCEEeeCccc
Confidence 45667776554 8999999999999998888775
No 42
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=49.70 E-value=29 Score=18.55 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=34.0
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK 86 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~ 86 (126)
...++.+.+.+.|+|.+|..+.-.. ...+.+.. .+.+++.+.+.+.+....
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~-----~d~~~l~~~i~~~l~~~~ 64 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVET-----DTLKDLDQFITEKIRKMP 64 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEE-----SSHHHHHHHHHTTGGGCT
T ss_pred CHHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEE-----CCHHHHHHHHHHHhccCC
Confidence 4578899999999999998863211 13333332 467788888876665543
No 43
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=49.25 E-value=17 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=26.5
Q ss_pred EEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 15 YRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 15 ~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
.+.++|++.+- .|.+++..|.++|||-+.-++.
T Consensus 166 ~vTDnGn~IlD~~~~~i~dp~~l~~~l~~i~GVVe~GlF~ 205 (224)
T 3kwm_A 166 TITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFA 205 (224)
T ss_dssp CCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred cCccCCCEEEEcCCCCCCCHHHHHHHHcCCCCEeeeCccc
Confidence 45667877665 8999999999999988776663
No 44
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=41.92 E-value=29 Score=22.94 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=27.2
Q ss_pred EEEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 14 AYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 14 ~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
.++.++|++.+- .|.+++..|.+.|||-+.-++.
T Consensus 168 ~~vTdnGn~ilD~~~~~i~~~~~l~~~l~~i~GVve~GlF~ 208 (227)
T 1uj6_A 168 FYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFV 208 (227)
T ss_dssp ECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred CEEcCCCCEEEEeeCCCCCCHHHHHHHHhCCCCcceeccEe
Confidence 356778877665 7999999999999988777764
No 45
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=41.67 E-value=47 Score=18.71 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=21.2
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCC
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFG 54 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~ 54 (126)
-..++++++.+.+++.++-+.-..++.|.
T Consensus 61 l~~~i~~al~~l~gv~~v~V~l~~~p~W~ 89 (103)
T 1uwd_A 61 ILSDAEEAIKKIEGVNNVEVELTFDPPWT 89 (103)
T ss_dssp HHHHHHHHHHTSSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhCCCcceEEEEEecCCCCC
Confidence 35678888888899998777655566554
No 46
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=40.69 E-value=24 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.8
Q ss_pred EEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 15 YRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 15 ~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
++.++|++.+- .|.+++..|.+.|||-+.-++.
T Consensus 171 ~vTdnGn~IlD~~~~~i~~p~~l~~~l~~i~GVve~GlF~ 210 (229)
T 1lk5_A 171 VITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFA 210 (229)
T ss_dssp CCCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEcCCCCEEEEeeCCCCCCHHHHHHHHhcCCCcceecccc
Confidence 56677877664 7999999999999988777764
No 47
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=40.20 E-value=24 Score=23.70 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.3
Q ss_pred EEEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 14 AYRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 14 ~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
.++.++|++.+- .|.+++..|.++|+|-+.-+|.
T Consensus 176 p~vTDnGN~IlD~~~~~i~dp~~l~~~l~~i~GVVe~GlF~ 216 (239)
T 3uw1_A 176 PYVTDNGNEILDVKGLRIDDPRALEAAINGWPGVVTVGLFA 216 (239)
T ss_dssp BCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred ceEccCCCEEEEecCCCCCCHHHHHHHHcCCCCEEeecCCc
Confidence 456777877765 8999999999999987776663
No 48
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=40.04 E-value=41 Score=17.64 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=33.0
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS 85 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~ 85 (126)
...++.+.+.++|+|.+|..+.-.. ...+.+. ..+.+++.+.+...+...
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~~-----d~l~~v~-----~~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVYGVY-----DIVVKVE-----ADSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEECSSSC-----SEEEEEE-----CSSHHHHHHHHHHTGGGS
T ss_pred CHHHHHHHHhCCCCeEEEEEEeccC-----CEEEEEE-----ECCHHHHHHHHHHHhcCC
Confidence 4578889999999999998852211 2333333 346777888777666544
No 49
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=38.32 E-value=20 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=22.2
Q ss_pred eecCceEEEcC----CCcEEEe--------------ChHHHHHHHhc
Q psy4975 8 LHTGDLAYRLP----DGTHFII--------------SPCELESIFRQ 36 (126)
Q Consensus 8 ~~TGD~~~~~~----~g~l~~~--------------~~~~iE~~l~~ 36 (126)
|++||+++++. ...|.|. ++.+||+++.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 68999999974 2455554 89999998874
No 50
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=37.56 E-value=37 Score=22.83 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=29.4
Q ss_pred eec-CceEEEcCCCcEEEe--------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 8 LHT-GDLAYRLPDGTHFII--------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 8 ~~T-GD~~~~~~~g~l~~~--------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
++. ++-.++.++|++.+- .|.+++..|.++|||-+.-++.
T Consensus 173 lR~~~~~p~vTDnGn~IlD~~f~~~i~dp~~l~~~l~~i~GVVe~GlF~ 221 (244)
T 2f8m_A 173 IRKRNGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFV 221 (244)
T ss_dssp ECEETTEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEESEEC
T ss_pred EEEcCCCcEEcCCCCEEEEecCCCCCCCHHHHHHHHhcCCCcceeeeEe
Confidence 443 344466778877554 6899999999999988777664
No 51
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=36.19 E-value=35 Score=22.73 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=25.9
Q ss_pred EcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 16 RLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 16 ~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
+.++|++.+- +|.++|..|.++|+|-+.-+|.
T Consensus 170 vTDnGN~IlD~~~~~i~dp~~l~~~L~~i~GVVe~GLF~ 208 (228)
T 4gmk_A 170 HTDSDNYIIDLHLGKIENPKELGDYLINQVGVVEHGLFL 208 (228)
T ss_dssp CCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EecCCCEEEEecCCCCCCHHHHHHHHhCCCCEEeeeeec
Confidence 4667777665 8999999999999988877763
No 52
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=34.23 E-value=67 Score=18.32 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=28.5
Q ss_pred EcCCCcEEEe-------------ChHHHHHHH-hcCCCcceEEEEeeecCCCC
Q psy4975 16 RLPDGTHFII-------------SPCELESIF-RQHPDVEDVAVIGIPHDVFG 54 (126)
Q Consensus 16 ~~~~g~l~~~-------------~~~~iE~~l-~~~~~v~~~~~~~~~~~~~~ 54 (126)
++++|.+.+. -..+++.++ .+.+++..+-+....++.|.
T Consensus 40 v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~W~ 92 (108)
T 3lno_A 40 ADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWS 92 (108)
T ss_dssp ECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCSSCCC
T ss_pred ECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCC
Confidence 3445777765 356788888 88999999888777777654
No 53
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=34.23 E-value=29 Score=26.44 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=22.7
Q ss_pred eecCceEEEcC--CC--cEEEe--------------ChHHHHHHHhcCC
Q psy4975 8 LHTGDLAYRLP--DG--THFII--------------SPCELESIFRQHP 38 (126)
Q Consensus 8 ~~TGD~~~~~~--~g--~l~~~--------------~~~~iE~~l~~~~ 38 (126)
|++||++++.. ++ .+.|. +..++|+++.+..
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 68999999975 33 44443 8999999988543
No 54
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=32.89 E-value=35 Score=23.20 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=26.7
Q ss_pred EEcCCCcEEEe-------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 15 YRLPDGTHFII-------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 15 ~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
++.++|++.+- .|.+++..|.++|||-+.-+|.
T Consensus 199 ~vTDnGN~IlD~~f~~i~dp~~l~~~l~~i~GVVe~GlF~ 238 (264)
T 1xtz_A 199 VVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFI 238 (264)
T ss_dssp CCCTTSCEEEEEECSSBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EEcCCCCEEEEeeCCCCCCHHHHHHHHhcCCCccccceEe
Confidence 56777877664 7999999999999988777664
No 55
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=32.04 E-value=41 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=26.2
Q ss_pred EEEcCCCcEEEe------ChHHHHHHHhcCCCcceEEEEe
Q psy4975 14 AYRLPDGTHFII------SPCELESIFRQHPDVEDVAVIG 47 (126)
Q Consensus 14 ~~~~~~g~l~~~------~~~~iE~~l~~~~~v~~~~~~~ 47 (126)
.++.++|++.+- .|.+++..|.++|+|-+.-+|.
T Consensus 169 p~vTDnGn~IlD~~~~i~~p~~l~~~l~~i~GVve~GlF~ 208 (226)
T 2pjm_A 169 PVITDNGNMIIDVFMNIDDAIELEKEINNIPGVVENGIFT 208 (226)
T ss_dssp BCBCTTSCEEEEEECCCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred cEEcCCCCEEEEeCCCCCCHHHHHHHhcCCCCEEeecCcc
Confidence 345666766553 8999999999999988777664
No 56
>1z9i_A Epidermal growth factor receptor; juxtamembrane structure EGFR micelle, transferase; NMR {Homo sapiens}
Probab=30.81 E-value=21 Score=18.02 Aligned_cols=18 Identities=28% Similarity=0.095 Sum_probs=12.1
Q ss_pred CcccCCCCC-ccchHHHHH
Q psy4975 98 DFIPRTMSG-KVKRKDLNE 115 (126)
Q Consensus 98 ~~lp~t~~G-Kv~r~~l~~ 115 (126)
+.-|++|+| |.+-..++=
T Consensus 20 ~~EPL~Psg~~pN~a~lRI 38 (53)
T 1z9i_A 20 LVEPLTPSGEAPNQALLRI 38 (53)
T ss_dssp SSSSSCSSSSCHHHHHHHH
T ss_pred ccCcCCcCCCCcchHHHhh
Confidence 345899988 776665543
No 57
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=30.50 E-value=1.7e+02 Score=22.40 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=21.2
Q ss_pred eecCceEEEcCC----CcEEEe--------------ChHHHHHHHhc
Q psy4975 8 LHTGDLAYRLPD----GTHFII--------------SPCELESIFRQ 36 (126)
Q Consensus 8 ~~TGD~~~~~~~----g~l~~~--------------~~~~iE~~l~~ 36 (126)
|++||++++..- -.+.|. +..+|++++.+
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 689999999742 234443 88999998874
No 58
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=27.39 E-value=12 Score=22.88 Aligned_cols=7 Identities=71% Similarity=1.630 Sum_probs=6.1
Q ss_pred CceecCc
Q psy4975 6 GWLHTGD 12 (126)
Q Consensus 6 g~~~TGD 12 (126)
|||+||.
T Consensus 90 GWY~s~~ 96 (141)
T 4e0q_A 90 GWYTTGD 96 (141)
T ss_dssp EEEEEEC
T ss_pred EEEeCCC
Confidence 8999986
No 59
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=26.11 E-value=92 Score=17.45 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=21.9
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeecCCCC
Q psy4975 26 SPCELESIFRQHPDVEDVAVIGIPHDVFG 54 (126)
Q Consensus 26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~ 54 (126)
-..++++++.+.+++.++-+.-..++.|.
T Consensus 60 l~~~i~~al~~l~gv~~V~V~l~~~p~W~ 88 (103)
T 3cq1_A 60 LGEAVRQALSRLPGVEEVEVEVTFEPPWT 88 (103)
T ss_dssp HHHHHHHHHHTSTTCCEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhCCCceeEEEEEecCCCCC
Confidence 35678889888999998777666666554
No 60
>4dcz_A DNAJ-like protein Mg200; dimer, intra-domain symmetry AXIS, unknown function; 2.90A {Mycoplasma genitalium}
Probab=25.70 E-value=58 Score=17.95 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=10.0
Q ss_pred ceecCceEEEcCCCcEEEe
Q psy4975 7 WLHTGDLAYRLPDGTHFII 25 (126)
Q Consensus 7 ~~~TGD~~~~~~~g~l~~~ 25 (126)
|..+ |++|++|.+...
T Consensus 64 WVW~---GYFDE~g~WV~~ 79 (92)
T 4dcz_A 64 WSWK---GYFDEQGKWVWN 79 (92)
T ss_dssp EEES---EEECTTSBEEEC
T ss_pred EEEE---eEecCCCCEeec
Confidence 5555 677777766554
No 61
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.26 E-value=18 Score=25.51 Aligned_cols=8 Identities=50% Similarity=1.336 Sum_probs=6.8
Q ss_pred CceecCce
Q psy4975 6 GWLHTGDL 13 (126)
Q Consensus 6 g~~~TGD~ 13 (126)
|||.||.-
T Consensus 91 GWY~tg~~ 98 (338)
T 4b4t_U 91 GWYHSGPK 98 (338)
T ss_dssp EEEECCSS
T ss_pred EEEecCCC
Confidence 89999964
No 62
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=20.94 E-value=68 Score=15.20 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=15.6
Q ss_pred CCCCceecCceEEEcCCCcEEEe
Q psy4975 3 DDDGWLHTGDLAYRLPDGTHFII 25 (126)
Q Consensus 3 ~~~g~~~TGD~~~~~~~g~l~~~ 25 (126)
..+-.|..||.+.. +|.+|..
T Consensus 3 ~~~~~Y~~Gd~Vty--~G~~Y~c 23 (45)
T 1ed7_A 3 QVNTAYTAGQLVTY--NGKTYKC 23 (45)
T ss_dssp CSSEEECTTCCEEE--TTEEECB
T ss_pred cCCceEcCCCEEEE--CCeEEEE
Confidence 34567899999988 5777764
No 63
>2okm_A Collagen adhesin; collagen-binding, cell adhesion; 1.65A {Enterococcus faecalis}
Probab=20.20 E-value=35 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=10.4
Q ss_pred ceecCceEEEcCCCcE
Q psy4975 7 WLHTGDLAYRLPDGTH 22 (126)
Q Consensus 7 ~~~TGD~~~~~~~g~l 22 (126)
||.|||+. ++.+++
T Consensus 7 yyKtGdm~--~d~~~V 20 (147)
T 2okm_A 7 FYKVGDLA--GESNQV 20 (147)
T ss_dssp EEEEEECC--SSTTEE
T ss_pred EEeccCCC--CCCCeE
Confidence 78999995 555655
No 64
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=20.19 E-value=1.2e+02 Score=20.27 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCcceEEEEeeecCCCC-CeeEEEEEeCCCCCCCHHHHHHHHHhhcCC
Q psy4975 28 CELESIFRQHPDVEDVAVIGIPHDVFG-ELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84 (126)
Q Consensus 28 ~~iE~~l~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 84 (126)
.+||++|... + ..+-+.+..+...| ....-++...-........+...+++.||+
T Consensus 30 ~~Le~AL~~~-~-~~v~~~~agRTDaGVHA~gqv~~f~~~~~~~~~~~~~~lN~~LP~ 85 (249)
T 1vs3_A 30 GELERALPGI-G-ALPKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPE 85 (249)
T ss_dssp HHHHHHGGGG-T-BCSCCEESSCCBTTCEEEEEEEEEEECSCCCGGGHHHHHHHHSCT
T ss_pred HHHHHHHHHc-C-CcceEEEeccCcCCcCccccEEEEEECCCCCHHHHHHHHHhcCCc
Confidence 5788888887 3 23334444443333 111111111111234556788899998854
Done!