RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4975
(126 letters)
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 132 bits (335), Expect = 9e-38
Identities = 56/123 (45%), Positives = 73/123 (59%), Gaps = 18/123 (14%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
+D+DGWLHTGD+ Y DG +I + P ELE++ +HP V D AVI
Sbjct: 367 TIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVI 426
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSF-DFIPRTMS 105
GIP +V GELP A VV KP S +T +EVK +V +V K+L GGV F D IP++ S
Sbjct: 427 GIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVV---FVDEIPKSPS 483
Query: 106 GKV 108
GK+
Sbjct: 484 GKI 486
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 121 bits (305), Expect = 2e-33
Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 17/127 (13%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
+D DGWLHTGDL Y DG FI ++P ELE++ HP++ D AVI
Sbjct: 381 TIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVI 440
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
P + GE+P A VV +P S ++ +EV QFV QV P K++ VF+ D IP++ SG
Sbjct: 441 PYPDEEAGEIPMAFVVRQPGSELSEDEVMQFVAKQVAPYKKVRKVVFV---DAIPKSPSG 497
Query: 107 KVKRKDL 113
K+ R++L
Sbjct: 498 KILRREL 504
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 116 bits (292), Expect = 2e-31
Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 23/129 (17%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
D GWLHTGD+ Y DG +I I P ELE HP V +VAVIG+P
Sbjct: 393 DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVP 452
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI---PRTMSG 106
+ +GE P AVVV KP +++ A+E++ F+ ++ K F+ PRT G
Sbjct: 453 DEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPK------RIAFVDELPRTSVG 506
Query: 107 KVKRKDLNE 115
K+ ++ L E
Sbjct: 507 KILKRVLRE 515
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 115 bits (289), Expect = 3e-31
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 19/130 (14%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
D+DGWL TGDL Y DG +I I P E+E++ +HP V + AV+G
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVG 456
Query: 48 IPHDVFGELPAAVVVPKP--NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
+P + +GE AVVV KP ++ +TAEE++ F+ ++ K VF+ D +PRT S
Sbjct: 457 VPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFV---DELPRTAS 513
Query: 106 GKVKRKDLNE 115
GK+ R+ L E
Sbjct: 514 GKIDRRALRE 523
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 110 bits (277), Expect = 3e-30
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 23/126 (18%)
Query: 5 DGWLHTGDLAYRLPDGTHF--------IIS------PCELESIFRQHPDVEDVAVIGIPH 50
DGWLHTGDL Y DG + IIS P E+E++ HP V DVAVIG+P
Sbjct: 222 DGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPD 281
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI---PRTMSGK 107
+ +GE AVVV +P +++ AEE+ F +++ K S +F+ PR SGK
Sbjct: 282 EEWGEAVVAVVVLRPGATLDAEELIAFCRERLAGYKVPK------SVEFVDELPRNASGK 335
Query: 108 VKRKDL 113
+ +++L
Sbjct: 336 ILKREL 341
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 107 bits (271), Expect = 3e-29
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
+D DGWLHTGDL Y DG I I P E+E HP V + AV+G
Sbjct: 224 IDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVG 283
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK--RLSGGVFLCSFDFIPRTMS 105
+P + GE+ AA VV KP +++T EE+ F ++ K R ++ D +PRT S
Sbjct: 284 VPDERLGEVVAAFVVLKPGATLTEEELIAFCRGRLARFKVPR-----YVRFVDELPRTAS 338
Query: 106 GKVKRKDL 113
GK+++ L
Sbjct: 339 GKIQKFKL 346
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 109 bits (275), Expect = 3e-29
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 4 DDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGIP 49
DGWL TGD+ Y DG II P E+E + HP V + AV+G+P
Sbjct: 347 TDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVP 406
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
GE A VV K +S+T EE+ F +++ K F D +P++ GK+
Sbjct: 407 DPYRGEAVKAFVVLKEGASLTEEELIAFCRERLAAYKVPRQVEFR---DELPKSAVGKIL 463
Query: 110 RKDL 113
R++L
Sbjct: 464 RREL 467
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 105 bits (263), Expect = 3e-28
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW TGDL Y DG F+ ISP E+E + +HP V + V G+P
Sbjct: 224 DGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPD 283
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+++GE AA VV + +S VT EE++ F ++ K +F+ D +P+ +GK++R
Sbjct: 284 ELYGEEVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKILFV---DALPKGATGKIQR 340
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 101 bits (254), Expect = 3e-26
Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 17/126 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
+D DGWLHTGD+ Y D FI+ +P ELE++ HP + D AV+
Sbjct: 408 IDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVP 467
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ +V GE+P A VV S +T +E+KQFV QV KR+ F+ D IP+ SGK
Sbjct: 468 MKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFV---DSIPKAPSGK 524
Query: 108 VKRKDL 113
+ RKDL
Sbjct: 525 ILRKDL 530
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 98.5 bits (246), Expect = 8e-26
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW TGDL Y +G +I + P E+ES+ QHP V + AV+G+P
Sbjct: 223 DGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPD 282
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
+ GE A VV +P + AEE+K + +++ P K F+ D +P+T SGK+
Sbjct: 283 EDRGERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVIEFV---DELPKTASGKID 338
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 96.9 bits (242), Expect = 1e-24
Identities = 49/128 (38%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
L DGW TGD+A DG I IS ELE+ HP V + AV+G
Sbjct: 393 LTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVG 452
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+PH+ +GE P AVVV KP + VT EE+ + + +V L V D IP+T GK
Sbjct: 453 VPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKKV-AKWWLPDRVVF--VDEIPKTSVGK 509
Query: 108 VKRKDLNE 115
+K L E
Sbjct: 510 FDKKALRE 517
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 93.8 bits (234), Expect = 9e-24
Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
LD+DGW HTGDL Y +G ++ I P E+E++ QHP VE+ AV+
Sbjct: 283 PLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVV 342
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P D +G+ P A VVP + V+ EE++ F+ D++ KR +PR SG
Sbjct: 343 GVPDDEWGQRPVAFVVPN-DDPVSVEELQAFLADKLAKYKR---PKRWYPLPELPRNASG 398
Query: 107 KVKRKDL 113
K+ R L
Sbjct: 399 KIDRAAL 405
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 94.1 bits (234), Expect = 1e-23
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 17/126 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
+D DGWL TGD+AY DG +I I+P +LE++ HP++ D AV
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTA 485
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P GE+P A VV + S+++ E V +V QV P K++ VF+ S IP++ +GK
Sbjct: 486 VPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQS---IPKSPAGK 542
Query: 108 VKRKDL 113
+ R++L
Sbjct: 543 ILRREL 548
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 93.5 bits (233), Expect = 1e-23
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
+DGW TGD+ DG + I +S E+E +HP V +VAVI
Sbjct: 310 FTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVI 369
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P +GE AVVVP+ +++T E++ + +++ P K + + D +PR G
Sbjct: 370 GVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVV---DELPRNAMG 426
Query: 107 KVKR 110
KV++
Sbjct: 427 KVQK 430
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 93.4 bits (233), Expect = 1e-23
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
+GW HTGD R DG +F+ IS E+E+ HP V + AV+ +P
Sbjct: 301 NGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPS 360
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
++ + AVVV +P ++ E + +F D++ ++ D +P+T + K+++
Sbjct: 361 ELGEDEVKAVVVLRPGETLDPEALLEFCRDRLPYFMVPR---YIEFVDELPKTPTEKIQK 417
Query: 111 KDL 113
+L
Sbjct: 418 AEL 420
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 92.7 bits (230), Expect = 3e-23
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 17/128 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
+D+DGWLHTGD+ Y DG FI+ +P ELE+I HP VED AV+
Sbjct: 413 IDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVP 472
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P + GE+PAA VV P + + E++ FV V K++ F+ D IP+++SGK
Sbjct: 473 LPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFV---DSIPKSLSGK 529
Query: 108 VKRKDLNE 115
+ R+ L E
Sbjct: 530 IMRRLLKE 537
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 88.5 bits (220), Expect = 9e-22
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
LD + TGDL Y +G F + P E+E++ QHP V +V VIG
Sbjct: 306 LDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIG 365
Query: 48 IPHDVFGELPAAVVVPKPN--SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
P GE+ A VV KP+ VT E++ ++ +++ K F+ D +P+T S
Sbjct: 366 RPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFV---DELPKTAS 422
Query: 106 GKVKRKDL 113
GKV + L
Sbjct: 423 GKVLWRLL 430
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 88.4 bits (220), Expect = 1e-21
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
DDG+ TGDL DG + + ISP E+E++ HP V D AV+G+
Sbjct: 361 TDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGM 420
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P +V GE A VVP+ ++ T E++ F+ +Q +L + + D +P T GKV
Sbjct: 421 PDEVLGERICAFVVPRGGAAPTLAELRAFLREQGLAKFKLPDRLEV--VDSLPLTPVGKV 478
Query: 109 KRKDL 113
+K L
Sbjct: 479 DKKAL 483
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 87.7 bits (218), Expect = 2e-21
Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 30/134 (22%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
DDGW TGDL DG I IS E+E + +HP V +VAV+ +
Sbjct: 313 TDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAM 372
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-------FLCSFDFIP 101
P + GE AVVVP P +S+T E+ + + Q G+ L D +P
Sbjct: 373 PDERLGERVCAVVVPAPGASLTLAELTEHLAAQ---------GLAKQKWPERLEVVDALP 423
Query: 102 RTMSGKVKRKDLNE 115
RT SGKV++ +L E
Sbjct: 424 RTPSGKVQKFELRE 437
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 87.0 bits (216), Expect = 4e-21
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 23/126 (18%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGWLHTGD+A DG ++I + P E+E + +HP V VAVIG+P
Sbjct: 392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPD 451
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ---VNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ +GE AVVV +P ++V A E++ V+++ V+ K++ F+ D +P T GK
Sbjct: 452 EKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQV---DFV---DSLPLTALGK 505
Query: 108 VKRKDL 113
+K L
Sbjct: 506 PDKKAL 511
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 86.5 bits (215), Expect = 5e-21
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
+D DGWLHTGDL +G +I+ P E+E + +HP V + AVIG
Sbjct: 388 IDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIG 447
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P + GE+ A VV KP + +T EE+ + + + K FL D +P+ +GK
Sbjct: 448 VPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFL---DELPKNATGK 504
Query: 108 VKRKDLNET 116
V ++ L E
Sbjct: 505 VLKRALREK 513
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 84.6 bits (210), Expect = 2e-20
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 22/120 (18%)
Query: 5 DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
GW H+GDLA PDG +I IS E+E + +HP V + AV+
Sbjct: 400 GGWFHSGDLAVVHPDG--YIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVAR 457
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P + +GE P A VV KP +SVT EE+ ++ +++ K F+ +P+T +GK+
Sbjct: 458 PDEKWGETPCAFVVLKPGASVTEEELIEYCREKLAHFKVPKTVEFVE----LPKTATGKI 513
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 84.1 bits (208), Expect = 4e-20
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGWL TGDLA DG +I I P E+E + + DV +VAV+G H
Sbjct: 370 DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQH 429
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+GE+P A +V K +S + ++V + + K VFL +P+ +GK+++
Sbjct: 430 VKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFL---KELPKNATGKIQK 486
Query: 111 KDLNETK 117
L
Sbjct: 487 AQLVNQL 493
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 81.9 bits (203), Expect = 1e-19
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
L + L+TGDL +G + +SP E+E + HP V + AVIG
Sbjct: 227 LPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIG 286
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P + G+ AVVV S+ +E+ + + + VF+ S P+ +GK
Sbjct: 287 VPDPLLGQAIVAVVVSADGESLDEKELLKHCRKHLPNYMVPAEIVFVDSL---PKNANGK 343
Query: 108 VKRKDL 113
V R L
Sbjct: 344 VDRSAL 349
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 82.6 bits (205), Expect = 1e-19
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 37/131 (28%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
+D DGW+HTGDLA +G I I P E+E HP ++DV V+G
Sbjct: 423 IDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVG 482
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPR----- 102
+P + +GE A ++ +P +++T E+V+ F ++ K IPR
Sbjct: 483 VPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYK-------------IPRYIRFV 529
Query: 103 -----TMSGKV 108
T++GK+
Sbjct: 530 DEFPMTVTGKI 540
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 82.1 bits (203), Expect = 2e-19
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 1 MLDDDGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVI 46
+LD DGWL TGD+A DG + F + P ELE + P V A I
Sbjct: 428 ILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAI 487
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P + GE VV KP ++T E+V + + + K F D +P T G
Sbjct: 488 GVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFR---DELPTTNVG 544
Query: 107 KVKRKDL 113
K+ R++L
Sbjct: 545 KILRREL 551
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 80.8 bits (200), Expect = 6e-19
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 19/126 (15%)
Query: 4 DDGWLHTGDLAYRLPDGTHF--------IIS------PCELESIFRQHPDVEDVAVIGIP 49
DGW TGD+ Y +G + IIS P E+E + HP V + V+G+P
Sbjct: 358 QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVP 417
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
D +G++P A VV + VT EE++ F E+++ K F+ + +PR SGK+
Sbjct: 418 DDKWGQVPVAFVV--KSGEVTEEELRHFCEEKLAKYKVPKRFYFV---EELPRNASGKLL 472
Query: 110 RKDLNE 115
R +L +
Sbjct: 473 RHELKQ 478
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 80.5 bits (199), Expect = 7e-19
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
L+ DGWLHTGD Y +G + +S ELE+I HP ++D+ V+G
Sbjct: 394 LEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVG 453
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
I + E A VV +++ EE F E + K S +L +PR SGK
Sbjct: 454 IKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPS---YLEIRKDLPRNCSGK 510
Query: 108 VKRKDL 113
+ +K+L
Sbjct: 511 IIKKNL 516
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 79.6 bits (197), Expect = 1e-18
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
GW H+GDL +G + ++ E+E HP V +VAVIG+P
Sbjct: 394 GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPD 453
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+ E AVVVPK ++VT +E+ ++ K +F+ D +PR SGK+ +
Sbjct: 454 PKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFV---DELPRNPSGKILK 510
Query: 111 KDLNE 115
++L E
Sbjct: 511 RELRE 515
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 79.3 bits (196), Expect = 2e-18
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 30/135 (22%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
D DGW TGDLA DG I I E+E++ +HP + VA++
Sbjct: 416 DADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAY 475
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-------FLCSFDFIP 101
P + GE A VVP+P S+ EE+ +F++ Q V L D +P
Sbjct: 476 PDERLGERACAFVVPRPGQSLDFEEMVEFLKAQ---------KVAKQYIPERLVVRDALP 526
Query: 102 RTMSGKVKRKDLNET 116
RT SGK+++ L E
Sbjct: 527 RTPSGKIQKFRLREM 541
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 78.9 bits (195), Expect = 2e-18
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 6 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
W TGD YR DG ++ +SP E+E QHP V + AV+G +
Sbjct: 384 EWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDE 443
Query: 52 VFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P A VV K S E+K FV+D++ P K F+ D +P+T +GK+
Sbjct: 444 DGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFV---DELPKTATGKI 500
Query: 109 KRKDL 113
+R L
Sbjct: 501 QRFKL 505
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 78.9 bits (195), Expect = 2e-18
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 21/125 (16%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
W+H GD A DG +I + P E+ES+ HP V + A IG+P
Sbjct: 334 PGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVP 392
Query: 50 HDVFGELPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
V GE VV KP + +A E+ V D + R F +P+T +G
Sbjct: 393 DPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPFRPREVHF---VSDLPKTRNG 449
Query: 107 KVKRK 111
K+ R+
Sbjct: 450 KIMRR 454
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 78.5 bits (194), Expect = 4e-18
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
W TGD A R DG ++ I P E+ES+ HP V + AV+G+P
Sbjct: 395 GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPD 454
Query: 51 DVFGELPAAVVVPKPNSSVT--AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
G++ A VV AEE+++ V + P F+ D +P+T SGK+
Sbjct: 455 PGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFV---DELPKTASGKI 511
Query: 109 KR 110
+R
Sbjct: 512 QR 513
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 78.3 bits (193), Expect = 4e-18
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
+D+DGW+HTGDLA G I I P E+E HP V DV V G
Sbjct: 424 IDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFG 483
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P + +GE A V P + + EE+++F + ++ K F+ F P T++GK
Sbjct: 484 VPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEF---PMTVTGK 540
Query: 108 VKRKDLNETKVMR 120
V++ + E +
Sbjct: 541 VQKFRMREISIEE 553
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 76.7 bits (189), Expect = 2e-17
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 20/129 (15%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
G+ TGD AYR DG + ISP E+ES +HP V + AV+ P
Sbjct: 306 RGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSP 365
Query: 50 HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
+ +P A +V KP S A E+ V +++ P KR+ F+ +P+T+SG
Sbjct: 366 DPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFV---GELPKTISG 422
Query: 107 KVKRKDLNE 115
K++R +L +
Sbjct: 423 KIRRVELRK 431
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 75.3 bits (186), Expect = 5e-17
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 31/132 (23%)
Query: 3 DDDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGI 48
+ GW+ GD+ Y DG + IIS P E+E++ HP V DVAV G+
Sbjct: 366 NPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGV 425
Query: 49 PHDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLC--SFDFI--- 100
P + GE AVV P A E+ ++ RL+ + C S DF
Sbjct: 426 PDEEMGERVKAVVQPADGADAGDALAAELIAWLRG------RLAH--YKCPRSIDFEDEL 477
Query: 101 PRTMSGK-VKRK 111
PRT +GK KR+
Sbjct: 478 PRTPTGKLYKRR 489
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 74.6 bits (184), Expect = 8e-17
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
DGW TGD+A PDG H I I E+E+ HP V + AV+
Sbjct: 346 FTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVV 405
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+P D G+ A VV V A+E+ FV Q++ KR F+ D +PR G
Sbjct: 406 GVPDDDLGQRIVAYVV--GADDVAADELIDFVAQQLSVHKRPREVRFV---DALPRNAMG 460
Query: 107 KVKRKDL 113
KV +K L
Sbjct: 461 KVLKKQL 467
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 73.6 bits (181), Expect = 2e-16
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
LD++GW ++GDL G I IS E+E I QHP + D V+
Sbjct: 406 LDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVA 465
Query: 48 IPHDVFGELPAAVVVPKPN-SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
+P + GE A VV K S+T EEV F + K + D +PRT SG
Sbjct: 466 MPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVA-KYKYPE-HIVVIDKLPRTASG 523
Query: 107 KVKRKDLNE 115
K+++ L +
Sbjct: 524 KIQKFLLRK 532
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 73.5 bits (181), Expect = 2e-16
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGI 48
G+ TGD Y+ DG F++ S E+E +HPDV + AV+G+
Sbjct: 458 KFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGV 517
Query: 49 PHDVFGELPAAVVVPKPNSSVTAE----EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTM 104
++ G++P +VV K + + A+ E+ V +Q+ P VF+ +P+T
Sbjct: 518 RDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFV---KRLPKTR 574
Query: 105 SGKVKRKDLNETKVMRHDDVT 125
SGK+ R+ L K+ +D
Sbjct: 575 SGKILRRTL--RKIADGEDYK 593
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 73.2 bits (180), Expect = 3e-16
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 5 DGWLHTGDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGWLHTGD+ G H++ + P E+E++ QHP V AV+G P
Sbjct: 441 DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPD 500
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK----RLSGGVFLCSFDFIPRTMSG 106
G++P A V KP + +TA ++ + + + K R+ D +P T +G
Sbjct: 501 PDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPEIRI--------VDALPMTATG 552
Query: 107 KVKRKDLNE 115
KV+++DL
Sbjct: 553 KVRKQDLQA 561
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 72.8 bits (179), Expect = 3e-16
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------IS------PCELESIFRQHPDVEDVAVIGIPH 50
DGW TGDL + G +I IS P E+E HP V +VAV+G+P
Sbjct: 393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPD 452
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
V+GE+ AV V + + V E+ +++ +V +L F +D +P++ GK+ +
Sbjct: 453 PVWGEVGVAVCVARDGAPVDEAELLAWLDGKV-ARYKLPKRFFF--WDALPKSGYGKITK 509
Query: 111 KDLNE 115
K + E
Sbjct: 510 KMVRE 514
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 72.8 bits (179), Expect = 4e-16
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 20/126 (15%)
Query: 5 DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
W TGD A + DG + + I P E+ES +HP V + AV+G P
Sbjct: 306 GDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPD 365
Query: 51 DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
V GE+ A VV P S A+E+++ V+ + P K F+ +P+T+SGK
Sbjct: 366 PVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEE---LPKTVSGK 422
Query: 108 VKRKDL 113
++R +L
Sbjct: 423 IRRVEL 428
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 71.4 bits (175), Expect = 1e-15
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
DGW TGD+A R DG +++ P E+E++ HP + + AV+
Sbjct: 356 AFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVV 415
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+ +GE+ +VP + + E ++ + ++ K + + L D +PRT SG
Sbjct: 416 GMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYK-VPKHLRLV--DALPRTASG 472
Query: 107 KVKRKDLNET 116
K+++ L +
Sbjct: 473 KLQKARLRDA 482
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 71.2 bits (175), Expect = 1e-15
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 5 DGWLHTGDLAYRLPDGTHF--------------IISPCELESIFRQHPDVEDVAVIGIPH 50
DGWL TGD R DG + +SP E+E+ +HP V + AV+ +P
Sbjct: 313 DGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPD 372
Query: 51 DVFGELPAAVVVPKP---NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ A VVP+P + ++ +F+ +++ P K FL D +PRT +GK
Sbjct: 373 EDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFL---DTLPRTATGK 429
Query: 108 VKR 110
++R
Sbjct: 430 LQR 432
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 71.3 bits (175), Expect = 1e-15
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
+LDDDG+ TGD+A G I IS +LE++ HP V + AVI
Sbjct: 405 ILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVI 464
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
G+ H + E P +V KP + T EE+ ++++ ++ F+ D IP T +G
Sbjct: 465 GVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFV---DAIPHTATG 521
Query: 107 KVKRKDLNET 116
K+ + L E
Sbjct: 522 KILKTALREQ 531
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 70.5 bits (173), Expect = 2e-15
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 5 DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
WL TGDL R DG + + I P E+E +HP V + AV+G+P
Sbjct: 315 GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPD 374
Query: 51 DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
GE+ A VV S A E+++ V+ ++ + F+ D +P T +GK
Sbjct: 375 PERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFV---DELPMTTTGK 431
Query: 108 VKRKDL 113
++R++L
Sbjct: 432 IRRREL 437
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 69.8 bits (171), Expect = 4e-15
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
DG++ +GD+ Y +G F++ P E+E HPDV + AVIG+
Sbjct: 415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDD 474
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+ +G+ AA VV KP +S T E +KQ V D + K V L D +PR +GK+ R
Sbjct: 475 EQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVL---DELPRGATGKILR 531
Query: 111 KDL 113
++L
Sbjct: 532 REL 534
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 69.8 bits (171), Expect = 4e-15
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 4 DDGWLHTGDLAYRLPDG--------THFIISP-----C-ELESIFRQHPDVEDVAVIGIP 49
GW H+GDL + +G IIS C E+E++ HPD+ +VAVIG
Sbjct: 397 AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRA 456
Query: 50 HDVFGELPAAVVVPKP-NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
+ +GE+P AV + ++++T E++ +F+ D++ K L D +PR +GKV
Sbjct: 457 DEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPK---ALEIVDALPRNPAGKV 513
Query: 109 KRKDLNE 115
+ +L E
Sbjct: 514 LKTELRE 520
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 69.8 bits (171), Expect = 5e-15
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 21/123 (17%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
L+ DGW+ D+ Y +G +I I P E+ES+ +HP V+++ VIG
Sbjct: 357 LNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIG 416
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P +GE P A++ S T +++K F +++ K F+ D IP T SGK
Sbjct: 417 VPDSYWGEKPVAII----KGSATKQQLKSFCLQRLSSFKIPKEWHFV---DEIPYTNSGK 469
Query: 108 VKR 110
+ R
Sbjct: 470 IAR 472
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 69.3 bits (170), Expect = 5e-15
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
+DGWL+TGDL DG ++ I P +E +HP V A +G
Sbjct: 230 RLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVG 289
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
P GELP A V KP ++VT E+ FV+ ++ + +++ D +P T GK
Sbjct: 290 RPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPERAAVPKAIYI--IDALPLTAVGK 347
Query: 108 VKRKDL 113
+ + L
Sbjct: 348 IFKPRL 353
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 69.2 bits (170), Expect = 6e-15
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
+DGWL+TGDL DG ++ I P +E +HP V A +G P
Sbjct: 443 EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRP 502
Query: 50 HDVF-GELPAAVVVPKPNSSVTAEEVKQFVEDQV 82
D GELP A V KP +S T E+ F D +
Sbjct: 503 -DAHAGELPVAYVQLKPGASATEAELLAFARDHI 535
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 68.7 bits (168), Expect = 1e-14
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 20/123 (16%)
Query: 5 DGWLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW TGD+ + DG H++ I+ E+E HPDV + AVIG+P
Sbjct: 364 DGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPD 423
Query: 51 DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ G++ A +V + + + AE ++ FV+ + P K F+ D +P+T +GK
Sbjct: 424 EERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFV---DALPKTQTGK 480
Query: 108 VKR 110
++R
Sbjct: 481 IQR 483
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 68.2 bits (167), Expect = 1e-14
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
W TGDL R DG + I P ++ES +HP V + AV+G+P
Sbjct: 315 AGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVP 374
Query: 50 HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI---PRT 103
+ GE+ A VV K S AEE++ FV+ KRLS + +F+ P+T
Sbjct: 375 DPLRGEIVKAFVVLKEGYAGSDELAEELQLFVK------KRLSAHAYPREVEFVPALPKT 428
Query: 104 MSGKVKR 110
SGK++R
Sbjct: 429 PSGKIQR 435
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 68.2 bits (167), Expect = 2e-14
Identities = 42/125 (33%), Positives = 53/125 (42%), Gaps = 29/125 (23%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGE 55
+D+DG+L+ D A IIS P E E++ HP V D AV G+P++ GE
Sbjct: 392 VDEDGYLYLTDRA------AFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE 445
Query: 56 LPAAVVVPKPNSSVT---AEEVKQFVEDQVNPSKRLSGGVFLC--SFDFI---PRTMSGK 107
AVV P A E+ F RLS C S DF PR +GK
Sbjct: 446 EVKAVVQPVDGVDPGPALAAELIAFCRQ------RLSR--QKCPRSIDFEDELPRLPTGK 497
Query: 108 -VKRK 111
KR
Sbjct: 498 LYKRL 502
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 67.6 bits (166), Expect = 2e-14
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 17/126 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHF--------IIS------PCELESIFRQHPDVEDVAVIGIPH 50
DG L +GD+ Y DG F I+S P E+E + HPDV + AVIG+
Sbjct: 426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDD 485
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+ FG+ A VV P +++ + +K +V D + K VFL D +PR +GKV +
Sbjct: 486 EEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFL---DELPRNPTGKVLK 542
Query: 111 KDLNET 116
++L E
Sbjct: 543 RELREM 548
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 67.6 bits (165), Expect = 3e-14
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 14/94 (14%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGWL TGDL G I ISP +E + HP+V + AV G+P
Sbjct: 407 DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPD 466
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84
++GE AAV+VP+ ++ TAEE+ QF +++
Sbjct: 467 QLYGEAVAAVIVPRESAPPTAEELVQFCRERLAA 500
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 66.7 bits (163), Expect = 4e-14
Identities = 44/129 (34%), Positives = 57/129 (44%), Gaps = 26/129 (20%)
Query: 5 DGWLHTGDLAYRLPDGTH-FI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW TGDLAYR DG F+ + P E+ES +HP V + VIG P
Sbjct: 319 DGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPD 378
Query: 51 DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF---IPRTM 104
V GE+ A V +P S E+ F +RL V F +P+T
Sbjct: 379 PVAGEIVKAFVSLRPGFEPSEELRRELLTFAR------QRLGAAVAPREIHFVDNLPKTR 432
Query: 105 SGKVKRKDL 113
SGK+ R+ L
Sbjct: 433 SGKIMRRLL 441
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 66.9 bits (164), Expect = 5e-14
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
GW HTGDLA PDG I IS E+E + +HP V AV+ P
Sbjct: 415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPD 474
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+GE+P A V K +S T EE+ + + K V F +P+T +GK+++
Sbjct: 475 PKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVV----FGELPKTSTGKIQK 530
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 66.6 bits (163), Expect = 5e-14
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 5 DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
DGW TGD+ DG FI + P E+E + R+HP VED AV+G+
Sbjct: 444 DGWFRTGDVVVMEEDG--FIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGL 501
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK--RLSGGVFLCSFDFIPRTMSG 106
P + E A VV +P +++ E ++ + + + K R D +PR G
Sbjct: 502 PREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRR-----FYHVDELPRDQLG 556
Query: 107 KVKRKDLNET 116
KV+R+++ E
Sbjct: 557 KVRRREVREE 566
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 66.4 bits (162), Expect = 6e-14
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW T D+A P GT I I P E+E + + P V +V VIG+P
Sbjct: 375 DGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPD 434
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
+ +G+ A VVP+ +++A+ + F ++ KR FL D +P+ KV
Sbjct: 435 ERWGQSVTACVVPREGETLSADALDTFCRASELADFKRPRRYFFL---DELPKNAMNKVL 491
Query: 110 RKDL 113
R+ L
Sbjct: 492 RRQL 495
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 66.1 bits (162), Expect = 7e-14
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 4 DDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGIP 49
DG+ TGDL G IIS P E+E + P V + AVIG+P
Sbjct: 375 ADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVP 434
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQV----NPSKRLSGGVFLCSFDFIPR-TM 104
H FGE AVVVPKP +++ + ++ ++ P KR+ F+ D +PR TM
Sbjct: 435 HPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQP-KRV---FFV---DELPRNTM 487
Query: 105 SGKVKRKDLNET 116
GKV++ L E
Sbjct: 488 -GKVQKNLLREQ 498
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 65.5 bits (160), Expect = 1e-13
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
DGW TGD+A DG I IS ++E++ HP V + A I
Sbjct: 407 VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACA 466
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
H + E P VVV +P + VT EE+ F E +V VF+ D IP T +GK++
Sbjct: 467 HPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFV---DAIPHTATGKLQ 523
Query: 110 RKDLNET 116
+ L E
Sbjct: 524 KLKLREQ 530
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 64.9 bits (159), Expect = 2e-13
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 6 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
G+ TGD A R DG ++I + E+ES HP V + AV+G P +
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522
Query: 52 VFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
V GE A V K S +E+K+ V ++ P +F +P+T SGK+
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIF---VPGLPKTRSGKI 579
Query: 109 KR 110
R
Sbjct: 580 MR 581
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 64.3 bits (157), Expect = 4e-13
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 5 DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
DGWL TGD+A +G I+ P E+E + HP V +VA +G+P
Sbjct: 431 DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPS 490
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSF-DFIPRTMSGKVK 109
+V GE VV K + S+T EE+ + K L F D +P++ GK+
Sbjct: 491 EVSGEAVKIFVVKK-DPSLTEEELITHCRRHLTGYKVPK----LVEFRDELPKSNVGKIL 545
Query: 110 RKDLNETKVMRHDD 123
R++L + + D+
Sbjct: 546 RRELRDEARAKVDN 559
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 63.5 bits (154), Expect = 8e-13
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
DG TGD+ Y G FI+ P +E+ HP V D AVIG+P
Sbjct: 395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPD 454
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+ FG AA VV P S V A +++ +++D+V+ ++ + S IPR +GKV R
Sbjct: 455 ERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSS---IPRNPTGKVLR 511
Query: 111 KDL 113
K+L
Sbjct: 512 KEL 514
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 63.1 bits (154), Expect = 1e-12
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 30/140 (21%)
Query: 2 LDDDGWLHTGDLAYRLPDGT-HF-------IIS------PCELESIFRQHPDVEDVAVIG 47
LD G T DL Y G H II+ P E+E+ V+DV V+G
Sbjct: 320 LDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLG 379
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK------RLSGGVFLCSFDFIP 101
+P +GE+ A+ VPK + S++ EE+K ++DQ++P K + +P
Sbjct: 380 LPDPHWGEVVTAIYVPK-DPSISLEELKTAIKDQLSPFKQPKHWIPVPQ---------LP 429
Query: 102 RTMSGKVKRKDLNETKVMRH 121
R GK+ R+ L + V R
Sbjct: 430 RNPQGKINRQQLQQIAVQRL 449
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 62.6 bits (152), Expect = 1e-12
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 26/132 (19%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
D +GW TGDLA++ +G I I E+E++ QHP V VA++
Sbjct: 414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAY 473
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQF-----VEDQVNPSKRLSGGVFLCSFDFIPRT 103
P + GE AVVVPKP ++ + F V Q P + L D +P T
Sbjct: 474 PDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPER-------LEVVDALPAT 526
Query: 104 MSGKVKRKDLNE 115
+GK+++ L E
Sbjct: 527 PAGKIQKFRLRE 538
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 62.6 bits (153), Expect = 1e-12
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 5 DGWLHTGDLAYRLPDGTH-FI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
W +GD AY DG F + P E+ES +HP V + VIG P
Sbjct: 431 GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPD 490
Query: 51 DVFGELPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDF---IPRTM 104
V GE+ A V +P + E E++ FV+ K L +F +P+T
Sbjct: 491 PVRGEIIKAFVALRPGYEPSEELKEEIRGFVK------KGLGAHAAPREIEFKDKLPKTR 544
Query: 105 SGKVKRKDL 113
SGK+ R+ L
Sbjct: 545 SGKIMRRVL 553
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 62.4 bits (151), Expect = 2e-12
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 5 DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
DGWLHTGD+ Y DG + F + P E+E + +H V++V IG+P
Sbjct: 430 DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPD 489
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
GE A VV K + + EE+ QF + K F D +P+T GK+ R
Sbjct: 490 PYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFR---DELPKTTVGKILR 546
Query: 111 KDLNETKVMRHDD 123
+ L E + +++D
Sbjct: 547 RVLIEEEKRKNED 559
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 61.7 bits (151), Expect = 2e-12
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 29/122 (23%)
Query: 10 TGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA LPDG F+ I E+E+ HP V + V+ +
Sbjct: 331 TGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEK 390
Query: 56 LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRL------SGGVFLCSFDFIPRTMSGKVK 109
A VVP + + A E++ F+ ++RL S V L D +P T +GKV
Sbjct: 391 RLVAYVVPAAGAELDAAELRAFL------AERLPDYMVPSAFVVL---DALPLTPNGKVD 441
Query: 110 RK 111
RK
Sbjct: 442 RK 443
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 61.7 bits (150), Expect = 2e-12
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 3 DDDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGI 48
+ GW +TGD+ +G IIS P E+E++ QHP +++ V+
Sbjct: 317 EQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPK 376
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P +G++P A +V S ++ ++ ++ +++ K + D +P SGK+
Sbjct: 377 PDAEWGQVPVAYIV--SESDISQAKLIAYLTEKLAKYKV---PIAFEKLDELPYNASGKI 431
Query: 109 KRKDL 113
R L
Sbjct: 432 LRNQL 436
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 61.0 bits (148), Expect = 5e-12
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 23/127 (18%)
Query: 6 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
GW H+GDL + PDG I IS E+E++ HP V + +V+ P +
Sbjct: 430 GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDE 489
Query: 52 VFGELPAAVVVPKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
+GE P A V KP + + AE++ +F +++ P+ + V F +P+T +G
Sbjct: 490 RWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL-PAYWVPKSVV---FGPLPKTATG 545
Query: 107 KVKRKDL 113
K+++ L
Sbjct: 546 KIQKHVL 552
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 60.6 bits (147), Expect = 7e-12
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 2 LDDDGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIG 47
LD +GW TGD+A PDG + F + P E+E + HP V + A IG
Sbjct: 437 LDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIG 496
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P + GE VV + + ++ EE+K + ++ K V D +P T GK
Sbjct: 497 VPDERSGEAVKLFVVAR-DPGLSVEELKAYCKENFTGYKVPKHIVLR---DSLPMTPVGK 552
Query: 108 VKRKDLNE 115
+ R++L +
Sbjct: 553 ILRRELRD 560
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 60.0 bits (145), Expect = 1e-11
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 24/145 (16%)
Query: 6 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
GWL+TGD+ PDG I IS E+E++ ++P V + AV+ +PH
Sbjct: 420 GWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHP 479
Query: 52 VFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK--RLSGGVFLCS-----FDFIPRTM 104
+GE P A VV + + + V + V + + + R + F+C +P+
Sbjct: 480 TWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNG 539
Query: 105 SGKV---KRKDLNETKVMRHDDVTR 126
+GK+ K +D+ + V+ +D
Sbjct: 540 NGKILKPKLRDIAKGLVVEDEDNVI 564
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 59.7 bits (145), Expect = 1e-11
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
G +GDLAYR DG + + +E I ++PD +VAV +P
Sbjct: 380 GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPD 439
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVK 109
V G+ A +V P + + +F+ Q + K+ V +C +PRT + KV
Sbjct: 440 PVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVC--AELPRTATFKVL 497
Query: 110 RKDLNETKVMRHDDV 124
++ L+ V D V
Sbjct: 498 KRQLSAEGVDCADPV 512
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 58.7 bits (143), Expect = 3e-11
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 27/122 (22%)
Query: 10 TGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA PDG F+ I E+E QHP V + AV+ +
Sbjct: 362 TGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDK 421
Query: 56 LPAAVVVPKPNSSVTAEEVKQFVEDQVN----PSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A VV + ++ A E++ + +++ P+ D +P T +GKV R+
Sbjct: 422 RLVAYVVARG--ALDAAELRAHLAERLPAYMVPA-------AFVVLDELPLTANGKVDRR 472
Query: 112 DL 113
L
Sbjct: 473 AL 474
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 58.8 bits (143), Expect = 3e-11
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 20/121 (16%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGD A R DG +I + E+ES HP V + AV+GIP D+ G+
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538
Query: 56 LPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKD 112
A V K +E+++ V ++ P + F +P+T SGK+ R+
Sbjct: 539 AIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRF---VPGLPKTRSGKIMRRL 595
Query: 113 L 113
L
Sbjct: 596 L 596
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 58.9 bits (143), Expect = 3e-11
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 19/81 (23%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
+DGW TGDL DG I I+P +ES + P +E + V+
Sbjct: 445 FTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVV 504
Query: 47 GIPHDVFGELPAAVVVPKPNS 67
G A++VP ++
Sbjct: 505 GDDKK----FLVALIVPDFDA 521
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 58.6 bits (142), Expect = 3e-11
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 20/130 (15%)
Query: 5 DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
DG+ HTGD A+ DG + + I P E+ES QHP V + AV G+P
Sbjct: 411 DGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPD 470
Query: 51 DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ G++ A +V S +E++ V+ P K F+ D +P+T+SGK
Sbjct: 471 PIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFV---DELPKTISGK 527
Query: 108 VKRKDLNETK 117
++R ++ E
Sbjct: 528 IRRVEIREKD 537
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 58.3 bits (141), Expect = 5e-11
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
+D DGWLHTGD+A G +I+ P E+E + P V +VA +G
Sbjct: 433 MDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVG 492
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+P + GE+ V+V K + ++TAE+VK + K+ F +P+T GK
Sbjct: 493 VPDEKSGEIVKVVIV-KKDPALTAEDVKAHARANLTGYKQPRIIEFRKE---LPKTNVGK 548
Query: 108 VKRKDLNET 116
+ R++L +
Sbjct: 549 ILRRELRDA 557
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 56.8 bits (138), Expect = 1e-10
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 47/156 (30%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVI 46
D+DGW HTGD+ LPDGT II + +LE+I++ P V+ + V
Sbjct: 375 FDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVY 434
Query: 47 GIPHDVFGELPAAVVVP-------------KPNSSVTA----EEVKQFVEDQVNPSKRLS 89
G F A+VVP +++K+ + +N + +
Sbjct: 435 GDSLKSF---LVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKEN 491
Query: 90 G--------GVFLCSFDFIPR----TMSGKVKRKDL 113
G + L F P T + K+KR L
Sbjct: 492 GLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQL 527
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 56.8 bits (137), Expect = 2e-10
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 27/128 (21%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
W +GD+ Y +G ++ I+ E+E + + P+V + AVIG+
Sbjct: 372 GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHD 431
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVF-----LCSFDFIPRTMS 105
D +GE AVVV P +++T E + + +RL+ F L D +PR S
Sbjct: 432 DRWGERITAVVVLNPGATLTLEALDRHCR------QRLAS--FKVPRQLKVRDELPRNPS 483
Query: 106 GKVKRKDL 113
GKV ++ L
Sbjct: 484 GKVLKRVL 491
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 56.6 bits (137), Expect = 2e-10
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 23/131 (17%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
+D G++ +GD+ Y DG F+ I P E+E++ P V D AV G
Sbjct: 375 IDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFG 434
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF---IPRTM 104
IP FGE AVV P+P +++ +++ ++ RL+G + +PR
Sbjct: 435 IPDAEFGEALMAVVEPQPGATLDEADIRAQLK------ARLAGYKVPKHIEIMAELPRED 488
Query: 105 SGKVKRKDLNE 115
SGK+ ++ L +
Sbjct: 489 SGKIFKRRLRD 499
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 56.0 bits (136), Expect = 2e-10
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
Query: 11 GDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFG 54
GD A DGT I + P E+E + HPDV D V+G+P + +G
Sbjct: 413 GDRARVEADGT--ITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWG 470
Query: 55 ELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGG------VFLCSFDFIPRTMSGK 107
+ AVV + + E++ L+G F+ D + R+ +GK
Sbjct: 471 QEVVAVVQLREGARPDLAELRAHC------RSSLAGYKVPRAIWFV---DEVQRSPAGK 520
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 55.4 bits (134), Expect = 5e-10
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 19/138 (13%)
Query: 5 DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
G +GDLAYR DG +I +S +E I +HP + VAV +
Sbjct: 379 HGMYWSGDLAYRDADG--WIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAV 436
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P + G+ A +V + ++ + F+ Q + + + D +P T + KV
Sbjct: 437 PDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAAD-LPSTATNKV 495
Query: 109 KRKDLNETKVMRHDDVTR 126
+++L D VT
Sbjct: 496 LKRELIAQGWATGDPVTL 513
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 55.5 bits (134), Expect = 5e-10
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 25/134 (18%)
Query: 2 LDDDGWLHTGDLAYRLPDGTH--------------FIISPCELESIFRQHPDVEDVAVIG 47
L DDG+ TGDL Y DG F+++P E+E P V V+G
Sbjct: 402 LTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVG 461
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
D P A V+P +S + + + K + + +F P T S
Sbjct: 462 ATRDGKTV-PVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAF---PVTESA- 516
Query: 108 VKRKDLNETKVMRH 121
N K+ +H
Sbjct: 517 ------NGAKIQKH 524
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 55.2 bits (133), Expect = 5e-10
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
DGWL TGD+ DG I I +LE+ P+V + AVIG P
Sbjct: 428 ADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYP 487
Query: 50 HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
D +GE P AV V P + TAE ++ + D++ P+ L + D I +T G
Sbjct: 488 DDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRL-PNWMLPE--YWTFVDEIDKTSVG 544
Query: 107 KVKRKDL 113
K +KDL
Sbjct: 545 KFDKKDL 551
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 55.1 bits (133), Expect = 5e-10
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 7 WLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDV 52
W HTGD R DG F+ IS E+E + HP V AV +P ++
Sbjct: 401 WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSEL 460
Query: 53 FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKD 112
+ A VV + +++ + + E ++ + ++ +P+T +GKV++
Sbjct: 461 GEDEVMAAVVLRDGTALEPVALVRHCEPRL---AYFAVPRYVEFVAALPKTENGKVQKFV 517
Query: 113 LNETKV 118
L E V
Sbjct: 518 LREQGV 523
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 53.9 bits (130), Expect = 2e-09
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 5 DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
DG+ TGD+ G + F + P E+E + HP V +VA +G+P
Sbjct: 434 DGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPD 493
Query: 51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
+ GE VV K + ++T E+VK F ++++ KR F +P+T GK+ R
Sbjct: 494 EHSGEAVKLFVVKK-DPALTEEDVKAFCKERLTNYKRPKFVEFRTE---LPKTNVGKILR 549
Query: 111 KDLNETK 117
++L + K
Sbjct: 550 RELRDGK 556
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 53.5 bits (129), Expect = 2e-09
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 2 LDDDGWL--HTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAV 45
+DGW TGDL DG I I P E+E++ +HP V + AV
Sbjct: 353 FVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 53.4 bits (129), Expect = 2e-09
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 29/122 (23%)
Query: 7 WLHTGDLAYRLPDGTHFII---SPC-----------ELESIFRQHPDVEDVAVIGIPHDV 52
+ GD A DGT ++ S C E+E + HPDV D V+G+P +
Sbjct: 247 YAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDER 306
Query: 53 FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGG------VFLCSFDFIPRTMSG 106
+G+ AVV + + + E++ + L+G V + D +PR SG
Sbjct: 307 WGQRVVAVVQLRAGAGLDLAELRDHC------RQHLAGYKLPRAIVVV---DTVPRAPSG 357
Query: 107 KV 108
K
Sbjct: 358 KA 359
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 53.3 bits (128), Expect = 2e-09
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 22/128 (17%)
Query: 6 GWLHTGDLAYRLPDGTH--------------FIISPCELESIFRQHPDVEDVAVIGIPHD 51
W +GD R DG++ +SP E+ES QHP V + AV+G+ D
Sbjct: 384 EWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGV-ED 442
Query: 52 VFGEL-PAAVVVPKPNSSVTA---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
G + P A +V +P + E+K+ V+D++ P K VF+ D +P+T +GK
Sbjct: 443 EDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFV---DDLPKTATGK 499
Query: 108 VKRKDLNE 115
++R L E
Sbjct: 500 IQRFKLRE 507
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 53.4 bits (129), Expect = 3e-09
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 7 WLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDV 52
TGDL PDGT F+ + E+E+ +HP V+ V+ +
Sbjct: 360 LYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDGG 419
Query: 53 FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS----KRLSGGVFLCSFDFIPRTMSGKV 108
L AA VV + ++V A ++ + + + P+ R V L + P T +GKV
Sbjct: 420 AKAL-AAFVVAEDGAAVDAAVLRAALAELL-PAYMVPSRF---VVLDAL---PLTANGKV 471
Query: 109 KRKDL 113
RK L
Sbjct: 472 DRKAL 476
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 52.7 bits (127), Expect = 4e-09
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 8 LHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVF 53
TGDL +G FI P E+E++ +HP +++ VI P
Sbjct: 418 FRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRR 477
Query: 54 GELPAAVVVPKPNS--SVTAEEVKQFVEDQVNPSK--RLSGGVFLCSFDFIPRTMSGKVK 109
GE AVVV +P + T EE+ + + + K R+ V D +P++ SGK+
Sbjct: 478 GETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFV-----DSLPKSGSGKIL 532
Query: 110 RKDLNE 115
+ L E
Sbjct: 533 WRQLQE 538
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 52.4 bits (126), Expect = 4e-09
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
D DG+ +GDL R PDG + I+ E+E++ +HP V D A++ +
Sbjct: 411 DADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAM 470
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGK 107
P ++ GE A +V K + A ++++F+ ++ + K F+ S P T GK
Sbjct: 471 PDELLGEKSCAFIVVKE-PPLRAAQLRRFLRERGLAAFKLPDRIEFVDSL---PLTAVGK 526
Query: 108 VKRKDLNE 115
+ +K L
Sbjct: 527 IDKKALRR 534
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 51.8 bits (125), Expect = 8e-09
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
LD+DGWLHTGD+ DG I I+P +E+ + P + V+
Sbjct: 307 LDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVV 366
Query: 47 GIPHDVFGELPAAVVVPKPNS 67
G A++V P +
Sbjct: 367 GDDR----PYLTALIVLDPEA 383
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 51.3 bits (123), Expect = 1e-08
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
D +G+ +TGDL P+G + I+ E+E++ HP V D A++ +
Sbjct: 404 DAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSM 463
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P ++ GE A +V + ++ A ++++F+ ++ +L V D +P T GKV
Sbjct: 464 PDELLGEKSCAFIVVRD-PALKAAQLRRFLRERGLAEYKLPDRVEF--VDSLPLTAVGKV 520
Query: 109 KRKDL 113
+K L
Sbjct: 521 DKKAL 525
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 51.0 bits (123), Expect = 1e-08
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 6 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
W TGDL Y DG I E+E+ R P VE+ V+ +P
Sbjct: 330 RWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKG 389
Query: 52 VFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A VV K + T + +K+ ++ ++ P V+L D +P +GK+ RK
Sbjct: 390 EKVVRLVAFVVGKEGALDT-KALKKELKKRLPPYMIPRRFVYL---DSLPLNANGKIDRK 445
Query: 112 DL 113
L
Sbjct: 446 AL 447
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 50.6 bits (122), Expect = 2e-08
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 10 TGDLAYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDL PDG F I E+E+ R HP V D V+ + + G+
Sbjct: 324 TGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVV-VREEGPGD 382
Query: 56 --LPAAVVVPKPNSSVTAEEVKQFVEDQVN----PSKRLSGGVFLCSFDFIPRTMSGKVK 109
L A VVPK ++ AE ++ + + P+ D +P T +GKV
Sbjct: 383 QRL-VAYVVPKAGAAPDAEALRAALRATLPAYMVPA-------AFVQLDELPLTPNGKVD 434
Query: 110 RKDL 113
RK L
Sbjct: 435 RKAL 438
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 50.7 bits (122), Expect = 2e-08
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 40/145 (27%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
+DGWLHTGD DG I ++P +E++ +P VE V V+
Sbjct: 367 FTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVV 426
Query: 47 G--IPHDVFGELPAAVVV------PKPNSSVTAE--EVKQFVEDQVNPSKRLSGGVFLCS 96
G +P P A+VV P V + V ++ +RLS + +
Sbjct: 427 GSGLPQ------PVALVVLSEAADPLEREEVEESLQQTLAKVNSELESHERLS-ALVVVK 479
Query: 97 ------FDFIPRTMSGKVKRKDLNE 115
+ T+ K+KR + +
Sbjct: 480 EAWTVENGLLTPTL--KIKRNVVEK 502
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 50.4 bits (120), Expect = 2e-08
Identities = 39/132 (29%), Positives = 50/132 (37%), Gaps = 30/132 (22%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
DGW++TGDL R DG +I I+P E++ I V + A IP
Sbjct: 401 DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPD 460
Query: 51 DVFGELPAAVVVPKPN-SSVTAEEVKQFV--------EDQVNPSKRLSGGVFLCSFDFIP 101
+ FG L VV A +K + E PS + IP
Sbjct: 461 EEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPST-------IVIVTDIP 513
Query: 102 RTMSGKVKRKDL 113
RT SGKV R L
Sbjct: 514 RTQSGKVMRASL 525
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 49.6 bits (119), Expect = 4e-08
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 10 TGDLAYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDL R DG F I E+E+ R P V + AV+ D G+
Sbjct: 335 TGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAE-AVVVAIGDAAGD 393
Query: 56 --LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
L A +V P +++ E+++ + ++ P+ + D +P T +GK+ RK L
Sbjct: 394 RQL-VAYIVADPGAAIDIEDLRARLATRL-PAYMVPS--RFVRLDALPLTPNGKIDRKAL 449
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 48.6 bits (117), Expect = 1e-07
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 32/124 (25%)
Query: 10 TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGD A R DG ++I + E+ES HP V + AV+G P D+ G+
Sbjct: 487 TGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQ 546
Query: 56 LPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDFI------PRTMSG 106
A V K + E E++ +V ++ P + D I P+T SG
Sbjct: 547 GIYAFVTLKGGEEPSDELRKELRNWVRKEIGP---------IAKPDVIQFAPGLPKTRSG 597
Query: 107 KVKR 110
K+ R
Sbjct: 598 KIMR 601
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 48.1 bits (115), Expect = 1e-07
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 30/130 (23%)
Query: 4 DDGWLHTGDLAY----------RLPDGTHFIIS-------PCELESIFRQHPDVEDVAVI 46
+ GW T DL R D IS P +E+ HP V D AV
Sbjct: 232 EPGWFRTDDLGALDDGVLTVLGRADD----AISTGGLTVLPQVVEAALATHPAVADCAVF 287
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS---KRLSGGVFLCSFDFIPRT 103
G+P D G+ A VV + T E ++ V ++ + + L D +PR
Sbjct: 288 GLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELH------VVDELPRR 341
Query: 104 MSGKVKRKDL 113
GKV R+ L
Sbjct: 342 GIGKVDRRAL 351
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 48.1 bits (115), Expect = 1e-07
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 8 LHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 53
+ T DL Y+ GT HF+ + P E+E + + P V++ V V
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA 352
Query: 54 GELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
GE A V+ + +++++ + P + + IP+ +GKV RK L
Sbjct: 353 GERVKAKVISH--EEIDPVQLREWCIQHLAPYQVPHEIESVTE---IPKNANGKVSRKLL 407
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 47.5 bits (113), Expect = 3e-07
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 5 DGWLHTGDLAYRLPDGTHFII---------SPCE------LESIFRQHPDVEDVAVIGIP 49
DGW HTGD+ LP+G II S E LE+++ Q+P VED+ V G
Sbjct: 492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG-- 549
Query: 50 HDVFGELPAAVVVPKP 65
D F + AVVVP
Sbjct: 550 -DSFKSMLVAVVVPNE 564
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 47.3 bits (113), Expect = 3e-07
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVE--DVA 44
+L DGWL TGDL Y L DG +I I P ++E I Q P++ D A
Sbjct: 434 VLAADGWLDTGDLGYLL-DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAA 492
Query: 45 VIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF----- 99
I + GE +V ++ EE + + + R GV + +
Sbjct: 493 AFSIAQEN-GEKIVLLV----QCRISDEERRGQLIHALAALVRSEFGV-EAAVELVPPHS 546
Query: 100 IPRTMSGKVKR 110
+PRT SGK+ R
Sbjct: 547 LPRTSSGKLSR 557
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 46.4 bits (111), Expect = 6e-07
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 2 LDDDGWLHTGDLAYRLPDG---------THFI-----ISPCELESIFRQHPDVEDVAVIG 47
++D+GW T D +G F I P E+E + QHP V+ V V+
Sbjct: 328 VNDEGWFATRDRG-EWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVP 386
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
+ FG+ P AVV + +S + ++++D+
Sbjct: 387 VADAEFGQRPVAVV--ESDSEAAVVNLAEWLQDK 418
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 46.5 bits (111), Expect = 6e-07
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 30/132 (22%)
Query: 3 DDDGWLHTGDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGI 48
D + +TGDL R G +F+ +S E+E + +HP VE+ V G+
Sbjct: 315 KGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGV 374
Query: 49 P-HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK------RLSGGVFLCSFDFIP 101
G A + P ++ + +++Q+ P+ R+ +
Sbjct: 375 EVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQL-PAYARPLFLRVQAAM--------E 425
Query: 102 RTMSGKVKRKDL 113
T + K ++ DL
Sbjct: 426 TTGTFKYQKTDL 437
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 46.1 bits (109), Expect = 8e-07
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 5 DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
TGD+ Y DG F++ P +E +HP V++V VIGIP
Sbjct: 420 GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPD 479
Query: 51 DVFGELPAAVVVPKPNSS-VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
GE A V +P + + +E++ F+ ++ + F+ D +PRT GK+
Sbjct: 480 QYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFV---DELPRTPVGKLS 536
Query: 110 RKDL 113
R +L
Sbjct: 537 RHEL 540
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 45.6 bits (108), Expect = 1e-06
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 61
+D+DG+ A + + + + I P E+ES +HP V + AV+ P + GE+ A V
Sbjct: 412 MDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFV 471
Query: 62 VPKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
V P + +E+++ V+ P K F+ +P+T++GK+KR +L
Sbjct: 472 VLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQE---LPKTITGKIKRNEL 525
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 45.3 bits (108), Expect = 1e-06
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 10 TGDLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGE 55
T D R DG +FI+ E+E HP V +VAV+G+ + G+
Sbjct: 477 TFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536
Query: 56 LPAAVVVPKPNSSVTAE--------EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
+ A VVPK + S+ E+ V+ Q+ R + F+ + +P+T SGK
Sbjct: 537 VAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSA---LPKTRSGK 593
Query: 108 VKRK 111
+ R+
Sbjct: 594 LLRR 597
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 44.7 bits (105), Expect = 2e-06
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 60
+ D++G++ D L IS +LE+ HP V++ AV+ IPH + E P AV
Sbjct: 398 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 457
Query: 61 VVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
VVP+ T EE+ + + +L + + IPRT +GK ++ L E
Sbjct: 458 VVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVF-AEE-IPRTSAGKFLKRALRE 509
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 44.0 bits (104), Expect = 4e-06
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 32/149 (21%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
L +DGWL TGD+ + G ++I P E+E++ QHP V V V+G
Sbjct: 410 LSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVG 469
Query: 48 IPHDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPS--------KRLSG----GV 92
+P E+ A V + S E K+ ++ K LS +
Sbjct: 470 VPDSRLTEMVVACVRLRDGWIWSDNEKENAKK--NLTLSSETLRHHCREKNLSRFKIPKL 527
Query: 93 FLCSFDFIPRTMSGKVKRKDLNETKVMRH 121
F+ P T +GK++R D +V+ H
Sbjct: 528 FVQWRKPFPLTTTGKIRR-DEVRREVLSH 555
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 42.3 bits (99), Expect = 1e-05
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 61
+D+DG+L+ D + I P E E+ HP V DVAVIG+P GE AV+
Sbjct: 389 VDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVI 448
Query: 62 VPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
S A E+ + ++ K F+ D +PRT +GK+ + L
Sbjct: 449 QLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFV---DELPRTPTGKLVKGLL 500
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 41.4 bits (97), Expect = 3e-05
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 12 DLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGELP 57
D R DG FI+ E+E HP V +VAV+G+ ++ G++
Sbjct: 478 DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVA 537
Query: 58 AAVVVPKPNSSV--------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
+ K + S + V Q+ R + F+ + +P+T SGK+
Sbjct: 538 VVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAA---LPKTRSGKLL 594
Query: 110 RK 111
R+
Sbjct: 595 RR 596
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 40.3 bits (95), Expect = 7e-05
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 28/97 (28%)
Query: 5 DGWLHTGDLAYRLPDG--------THFII-------SPCELESIFRQHPDVEDVAVIGIP 49
D W TGDL + +G + II SP +ES +Q P +
Sbjct: 325 DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAV----- 379
Query: 50 HDVFGE-LPA--AVVVPKPNSSVTAEEVKQFVEDQVN 83
VFG+ P A++VP PN ++ ++++ V+ Q+N
Sbjct: 380 --VFGDAQPFLVALIVPAPN--ISDDQLEAAVQ-QIN 411
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 39.9 bits (94), Expect = 1e-04
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 27/131 (20%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELE-SIFRQHPDVEDVAVI 46
D+ GWL TGDL + DG ++ P ++E ++ R HP + A
Sbjct: 413 TDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAA 471
Query: 47 GIPHDVFGELPAAVV--VPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF----- 99
D GE VV V + + + + V GV
Sbjct: 472 AFSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAV----AREHGVAPADVVLVRPGT 527
Query: 100 IPRTMSGKVKR 110
+P+T SGK++R
Sbjct: 528 LPKTSSGKIQR 538
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 14/53 (26%)
Query: 7 WLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAV 45
TGDL LPDG F+ I E+E+ +HP V + V
Sbjct: 357 LYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 39.2 bits (92), Expect = 2e-04
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVI 46
D +G+ +GDL PDG +I I+ E+E++ +HP V A++
Sbjct: 406 DANGFYCSGDLVSIDPDG--YITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALV 463
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
+ ++ GE A +V K + A ++++F+ +Q
Sbjct: 464 SMEDELMGEKSCAFLVVK--EPLKAVQLRRFLREQ 496
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 38.9 bits (91), Expect = 3e-04
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 26/104 (25%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVI 46
+D+DGWLHTGD+ LP G II +P ++E+++ + V V
Sbjct: 483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVY 542
Query: 47 GIPHDVFGELPAAVVVPKPN--------SSVTAEEVKQFVEDQV 82
G D AVVV P + E++KQ D
Sbjct: 543 G---DSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPR 583
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 38.2 bits (89), Expect = 5e-04
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 28/144 (19%)
Query: 6 GWLHTGDLAYRLPDGTHFIISPCE--------------LESIFRQHPDVEDVAVIGIPHD 51
G+ ++GDL ++ +G + I+S + +E+ +HP V + IGI
Sbjct: 492 GYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDP 551
Query: 52 VFGELPAAVVVPKPNSSVTA-------EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTM 104
+P ++V K + S + E+ + + L + + +P+T
Sbjct: 552 DCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQ---LPKTK 608
Query: 105 SGKVKR----KDLNETKVMRHDDV 124
+GK+ R K LN++ D+V
Sbjct: 609 TGKIPRQIISKFLNDSNYQLPDNV 632
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 37.4 bits (87), Expect = 7e-04
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 2 LDDDGWLHTGDLAYRLPDG-------THFI------ISPCELESIFRQHPDVEDVAVIGI 48
+D D W TGDL Y + G I I P E+E + Q V + AV+ +
Sbjct: 392 IDPDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAV 451
Query: 49 PHDVFGELPAAVVVPK---PNSSVTAEEVKQFVEDQ--VNPSKRLSGGVFLCSFDFIPRT 103
P V+ + P+ + EV Q V + V PS V + +PRT
Sbjct: 452 GTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSD-----VVFVAPGSLPRT 506
Query: 104 MSGKVKRKD 112
SGK++R
Sbjct: 507 SSGKLRRLA 515
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 37.3 bits (87), Expect = 8e-04
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCE-LESIFRQHP 38
LD+DGW HTGD+ +GT II E LE+++ Q+
Sbjct: 532 LDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNE 583
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 37.1 bits (86), Expect = 0.001
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 62
D++G+L+ + + + +SP E+E + V + G+P G+ VV
Sbjct: 407 DEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVT 466
Query: 63 PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
P + + ++ P+ + + + +PR +GK+ RK L
Sbjct: 467 PPGGEELDRAALLAECRARL-PNYMVPALIHVR--QALPRNANGKIDRKAL 514
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 37.0 bits (86), Expect = 0.001
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI 24
+D+DGWLH+GDL + DG +I
Sbjct: 415 IDEDGWLHSGDLGFLDDDGFLYI 437
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 36.0 bits (84), Expect = 0.002
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 3 DDDG--WLHTGDLAY-----RL------------PDGTHFIISPCELESIFRQHPDVEDV 43
D G W GDL Y RL GT + I PCE IF HP V+
Sbjct: 415 DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTI-PCE--RIFNTHPGVKRS 471
Query: 44 AVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 76
A++G+ + P V +P + + + Q
Sbjct: 472 ALVGVGVPG-AQRPVLCVELEPGVACSKSALYQ 503
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 36.0 bits (83), Expect = 0.002
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 18/74 (24%)
Query: 5 DGWLHTGDLAYRLPDGTHFII---------SPCE------LESIFRQHPDVEDVAVIGIP 49
DGW HTGD+ P+G II S E LE+ + + P + + V G
Sbjct: 492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYG-- 549
Query: 50 HDVFGELPAAVVVP 63
+ F AVVVP
Sbjct: 550 -NSFESFLVAVVVP 562
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 36.1 bits (83), Expect = 0.003
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 26/126 (20%)
Query: 10 TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA DG H F I E+E+ R+HP V + VI V +
Sbjct: 4933 TGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQ 4992
Query: 56 LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVF--------LCSFDFIPRTMSGK 107
L VVP+ + A+E + + D++ K L +P T +GK
Sbjct: 4993 L-VGYVVPQDPALADADEAQAELRDEL---KAALRERLPEYMVPAHLVFLARMPLTPNGK 5048
Query: 108 VKRKDL 113
+ RK L
Sbjct: 5049 LDRKAL 5054
Score = 31.9 bits (72), Expect = 0.079
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 10 TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA DG H F I E+E+ + HP V + V+ G+
Sbjct: 2385 TGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-DGASGK 2443
Query: 56 LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
A VVP + E++ ++ ++ + V L +P +GK+ RK L
Sbjct: 2444 QLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLER---LPLNPNGKLDRKAL 2498
Score = 31.1 bits (70), Expect = 0.16
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 10 TGDLAYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA DG F I E+E+ +HP V + V+ V G
Sbjct: 3428 TGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVL----AVDGR 3483
Query: 56 LPAAVVVPKPNSS----VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
A VVP+ + +K + + + P+ L FL + +P T +GK+ RK
Sbjct: 3484 QLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHLL----FL---ERMPLTPNGKLDRK 3536
Query: 112 DL 113
L
Sbjct: 3537 AL 3538
Score = 27.6 bits (61), Expect = 2.2
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 10 TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA DG H I E+E+ +HP V + AV+ V G+
Sbjct: 890 TGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLA----VDGK 945
Query: 56 LPAAVVVPKPNSSVTAEEVKQFVE----DQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
VV + E +K + + + P++ L L + +P T +GK+ RK
Sbjct: 946 QLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWL----AL---ERLPLTPNGKLDRK 998
Query: 112 DL 113
L
Sbjct: 999 AL 1000
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 35.9 bits (83), Expect = 0.003
Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 24/121 (19%)
Query: 10 TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA DG H F I E+E+ QHP V + V+ +
Sbjct: 3475 TGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQ 3534
Query: 56 LPAAVVVPKPNSS---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKD 112
L A VV P + + + D + P++ L L + P +GKV RK
Sbjct: 3535 LVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLL----VLAAM---PLGPNGKVDRKA 3587
Query: 113 L 113
L
Sbjct: 3588 L 3588
Score = 33.6 bits (77), Expect = 0.018
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 22/124 (17%)
Query: 10 TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHD-VFG 54
TGDLA DG H F I E+E+ R+ V + V I D G
Sbjct: 1958 TGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVV--IAQDGANG 2015
Query: 55 ELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI-----PRTMSGKVK 109
+ A VVP V +E + + + + S ++ + P T +GK+
Sbjct: 2016 KQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLD 2075
Query: 110 RKDL 113
RK L
Sbjct: 2076 RKAL 2079
Score = 33.6 bits (77), Expect = 0.020
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 10 TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA DG H F I E+E+ P V + V+ P D +
Sbjct: 894 TGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQ 953
Query: 56 LPAAVVVPKPNS----SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
L A +V T +E+K + QV P + + L D +P T +GK+ RK
Sbjct: 954 LVAYLVPAAVADGAEHQATRDELKAQLR-QVLPDYMVPAHLLL--LDSLPLTPNGKLDRK 1010
Query: 112 DL 113
L
Sbjct: 1011 AL 1012
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 35.6 bits (82), Expect = 0.004
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 6 GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
G+ +GD R DG +++ I E+ES HP + AV+GI H+
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572
Query: 52 VFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI------PRTMS 105
V G+ A V + E K + + R G F D I P+T S
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEELRKSLIL-----TVRNQIGAFAAP-DKIHWAPGLPKTRS 626
Query: 106 GKVKRKDLNETKVMRHDDV 124
GK+ R+ L + + D++
Sbjct: 627 GKIMRRILRKIASRQLDEL 645
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 35.4 bits (82), Expect = 0.004
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 1 MLDDDGWLHTGDLAYRLPDG--------THFIISPCEL------ESIFRQHPDVEDVAVI 46
+ W GDL Y G H + + E +F +HP V A++
Sbjct: 325 SDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALV 384
Query: 47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVED---QVNPSKRLSGGVFLCSFDFIPRT 103
G+ + P VV P P + ++ + Q + + + F R
Sbjct: 385 GV-GKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAKQAPATVEIQAVLIHPQFPVDIRH 443
Query: 104 MSGKVKRKDL 113
+ K+ R+ L
Sbjct: 444 NA-KIFRERL 452
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 33.6 bits (77), Expect = 0.020
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 29/125 (23%)
Query: 10 TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
TGDLA R DG H + I E+E+ + +V + AV + V G+
Sbjct: 4106 TGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAV-AVQEGVNGK 4164
Query: 56 LPAAVVVPKP---NSSVTAEEVKQFVE----DQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
+VP E +KQ + D + P + D +P +GK+
Sbjct: 4165 HLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVP-------LHWLWLDRLPLNANGKL 4217
Query: 109 KRKDL 113
RK L
Sbjct: 4218 DRKAL 4222
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 33.3 bits (77), Expect = 0.022
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 32/129 (24%)
Query: 9 HTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVE-DVAVIGIPHDVF 53
TGDL L DG+ F+ I E+E++ R P V V+ +
Sbjct: 326 RTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGG 385
Query: 54 GELPAAVVVP----KPNSSVTAEEVKQFVEDQ-----VNPSKRLSGGVFLCSFDFIPRTM 104
+L A + V + V ++ + ++ V PS V++ D +P T
Sbjct: 386 KQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMV-PS------VYV-PLDELPLTA 437
Query: 105 SGKVKRKDL 113
SGKV RK L
Sbjct: 438 SGKVDRKAL 446
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 32.7 bits (75), Expect = 0.032
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 25 ISPCELESIF-RQHPDVEDVAVIGIPHDVFG-ELPAAVVVPK--PNSSVTAEEVKQF--- 77
+S E+E + V + A IG+P G E V K P S+ E+K+
Sbjct: 622 VSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNS 681
Query: 78 -VEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
++ ++NP ++S V + SF PRT S KV R+ L
Sbjct: 682 AIQKKLNPLFKVSAVVIVPSF---PRTASNKVMRRVL 715
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 32.6 bits (75), Expect = 0.035
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 42/137 (30%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFIIS---------------PCELESIFRQHPDVE--DVA 44
+ DGWL TGDL + L +G +I+ P ++E + Q ++ VA
Sbjct: 365 ITPDGWLKTGDLGF-LRNG-RLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVA 422
Query: 45 VIGIPHDVFGELPAAVVVPKPNS----SVTAEEVKQFVE-------DQVNPSKRLSGGVF 93
G+ + + V S + A ++K+ V D V P +
Sbjct: 423 ACGVYDEKEQSEEVVIFVEYRQSLDDFTPLALKIKRHVNKKMGLNIDHVIPVRS------ 476
Query: 94 LCSFDFIPRTMSGKVKR 110
IP+T SGK++R
Sbjct: 477 ------IPKTTSGKIQR 487
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 32.7 bits (74), Expect = 0.041
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 5 DGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPA 58
DGWLHTGD+ P+G+ II ++IF+ E VAV I +++GE+ A
Sbjct: 495 DGWLHTGDVGEWQPNGSMKIID--RKKNIFKLSQG-EYVAVENI-ENIYGEVQA 544
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 30.7 bits (70), Expect = 0.16
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 1 MLDDDGWLHTGDLAYRLPDG 20
D DGWL TGDL Y +G
Sbjct: 409 AQDADGWLDTGDLGYLTEEG 428
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 30.7 bits (70), Expect = 0.17
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 15/52 (28%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVE 41
+DGW TGDL + L DG I E+E+ Q P VE
Sbjct: 427 EDGWFRTGDLGF-LHDGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVE 477
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 29.9 bits (68), Expect = 0.31
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 44/136 (32%)
Query: 9 HTGDLAYRLPDGTHFI--------------ISPCELESI---FRQHPDVEDVAVIGIP-- 49
HTGD Y L DG F I ELE I RQ VE AV+ +P
Sbjct: 379 HTGDAGY-LEDGLLFYQGRIDFQIKLNGYRI---ELEEIEQNLRQSSYVE-SAVV-VPYN 432
Query: 50 --HDVFGELPAAVVVPKPN--------SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF 99
H V + A VVPK + +E+K+ + + + P K ++ D
Sbjct: 433 KDHKV--QYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKF----IYR---DS 483
Query: 100 IPRTMSGKVKRKDLNE 115
+P T +GK+ RK L E
Sbjct: 484 LPLTPNGKIDRKALIE 499
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 29.3 bits (66), Expect = 0.46
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 5 DGWLHTGDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGIP- 49
D W TGDL + DG +F+ +S E+ + P V + V G+
Sbjct: 337 DIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKV 396
Query: 50 --HDVFGELPAAVVVPKPNSSVTAEEVKQ 76
+D G A + + +S+V E K
Sbjct: 397 PGYD--GRAGCAAITLEESSAVETEFTKN 423
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 28.8 bits (64), Expect = 0.67
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 57
+D DGW+ A D T I + P E+E + + V + AV+ +
Sbjct: 375 IDSDGWVTYRCRA----DDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTL 430
Query: 58 AAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI---PRTMSGKVKRKDL 113
A +V +++ V + + + RLS F + PRT +GK+ R L
Sbjct: 431 QAFLVATSGATID-GSVMRDLHRGL--LNRLSAFKVPHRFAVVDRLPRTPNGKLVRGAL 486
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 28.4 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 53 FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS 85
+ LPA VV N VT E V F EDQ+ P+
Sbjct: 137 YAHLPADVVPDAENLKVTLERVLPFWEDQIAPA 169
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 27.8 bits (62), Expect = 1.7
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 25 ISPCELESIFRQHPDVEDVAVIG--IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQV 82
+S E+E I +EDV V G +P AA+V P+ + + + +
Sbjct: 382 VSTTEVEGILSNVLGLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDL--DRFSAVLAKSL 439
Query: 83 NPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
P R F+ + +T + K+++ DL
Sbjct: 440 PPYAR---PQFIRLLPEVDKTGTFKLQKTDL 467
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 27.2 bits (61), Expect = 2.9
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)
Query: 7 WLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDV 52
W H GD P G I I E+ + + P+VED V+G D
Sbjct: 473 WRH-GDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDD 531
Query: 53 FGELPAAVVVPKPNSSVTAEEVKQFVEDQ--VNPSKR-LSGGVFLCSFDFIPRTMSGK 107
E V + ++ + + + + S R + + IP T+SGK
Sbjct: 532 GDERMPLFVKLREGVTLD-DALVKRIRSAIRAALSPRHVPAEIIAV--PDIPYTLSGK 586
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 26.8 bits (60), Expect = 3.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 41 EDVAVIGIPHDVFGEL 56
DVA+IG+ FGEL
Sbjct: 2 RDVAIIGVGQTKFGEL 17
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 26.8 bits (59), Expect = 3.3
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 14/48 (29%)
Query: 5 DGWLHTGDLAYRLPDGT--------------HFIISPCELESIFRQHP 38
TGDLA L DG F I E+E+ + P
Sbjct: 595 LRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 27.0 bits (60), Expect = 3.4
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 59 AVVVPKPN--------SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
A +VP+ + +E+K+ + + P K + D +P T +GK+ R
Sbjct: 441 AAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIY-------RDQLPLTANGKIDR 493
Query: 111 KDLNE 115
K L E
Sbjct: 494 KALAE 498
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 26.4 bits (59), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 26 SPCELESIFRQHPDVEDVAVIGIPHD 51
SP ELE + R+ + VI IP D
Sbjct: 511 SPDELEPVLREALATDGPVVIDIPVD 536
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 438
Score = 26.3 bits (59), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 13 LAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIP 49
LAY L G F++ P L SIF D +A + +P
Sbjct: 318 LAYMLLLGILFLLFPELLLSIFTPGADFALIAELAVP 354
>gnl|CDD|234790 PRK00550, rpsE, 30S ribosomal protein S5; Validated.
Length = 168
Score = 25.8 bits (58), Expect = 5.3
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 43 VAVIG--IPHDVFGELPAAVVVPKP 65
V ++G IPH+V G+ AA V+ KP
Sbjct: 76 VPLVGGTIPHEVIGKFGAAKVLLKP 100
>gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter
pylori HP0827 protein and similar proteins. This
subfamily corresponds to the RRM of H. pylori HP0827, a
putative ssDNA-binding protein 12rnp2 precursor,
containing one RNA recognition motif (RRM), also termed
RBD (RNA binding domain) or RNP (ribonucleoprotein
domain). The ssDNA binding may be important in
activation of HP0827. .
Length = 78
Score = 25.3 bits (56), Expect = 5.3
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 8 LHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVI 46
L+ G+L Y + + +L+ +F Q +V VI
Sbjct: 2 LYVGNLPYNVTEE--------DLKDLFGQFGEVTSARVI 32
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 26.3 bits (58), Expect = 5.7
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 20/70 (28%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQH---PDVED-- 42
L + W TGDL Y G F+ +S LESI + +
Sbjct: 406 LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAG 465
Query: 43 -VAVIGIPHD 51
+ V G+P +
Sbjct: 466 PLVVCGLPGE 475
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 25.7 bits (57), Expect = 7.9
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 30/124 (24%)
Query: 5 DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQH-PDVEDVAVIGIP 49
DGW TGD+ DG I +S +E + + P+ A + +P
Sbjct: 367 DGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVP 426
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ-----VNPSKRLSGGVFLCSFDFIPRTM 104
+ GE + + EE+ + + P K + D IP
Sbjct: 427 DEKKGEKIVLLTTT---EDLDPEELNAILREAGLPNLAVPRK-------ILHVDEIPLLG 476
Query: 105 SGKV 108
SGK
Sbjct: 477 SGKT 480
>gnl|CDD|237201 PRK12786, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 338
Score = 25.8 bits (57), Expect = 8.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 15 YRLPD-GTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEE 73
YR P GT + +L + R H V + E V V + +V AEE
Sbjct: 60 YRAPAPGTTGALPTAQLIAAARAH------GVDWVDTSGIRE----VTVTRAARTVDAEE 109
Query: 74 VKQFVE 79
+++ V
Sbjct: 110 IEEQVA 115
>gnl|CDD|235172 PRK03906, PRK03906, mannonate dehydratase; Provisional.
Length = 385
Score = 25.6 bits (57), Expect = 8.7
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 7 WLHTGDLAYRLPDGT 21
W T DLAY LPDG+
Sbjct: 110 WTRT-DLAYELPDGS 123
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 25.6 bits (56), Expect = 8.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 43 VAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRL 88
AV G P V+ +LPAAV+ ++ AE+ K+ + V+P+ +
Sbjct: 148 TAVSGRPGGVYLDLPAAVL----GQTMEAEKAKKTLVKVVDPAPKQ 189
>gnl|CDD|183831 PRK12933, secD, preprotein translocase subunit SecD; Reviewed.
Length = 604
Score = 25.4 bits (56), Expect = 9.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 53 FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRL 88
+GE A V K + E++Q ++ Q KR+
Sbjct: 37 YGEDAAVQVSAKAGLLLNVVELRQLLQAQGINVKRI 72
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 25.6 bits (57), Expect = 9.9
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 3 DDDGWLHTGDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGI 48
D W +TGDL G F+ ++ E+E+ P VE+ V G+
Sbjct: 436 KGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGV 495
Query: 49 P 49
Sbjct: 496 E 496
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.422
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,752,392
Number of extensions: 604638
Number of successful extensions: 1004
Number of sequences better than 10.0: 1
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 181
Length of query: 126
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 41
Effective length of database: 7,167,512
Effective search space: 293867992
Effective search space used: 293867992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)