RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4975
(126 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 113 bits (282), Expect = 5e-31
Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 16/127 (12%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
D DGWLH+GD+AY D FI ++P ELESI QHP++ D V G+
Sbjct: 410 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGL 469
Query: 49 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
P D GELPAAVVV + ++T +E+ +V QV +K+L GGV D +P+ ++GK+
Sbjct: 470 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTGKL 527
Query: 109 KRKDLNE 115
+ + E
Sbjct: 528 DARKIRE 534
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 106 bits (266), Expect = 9e-29
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
L DG+ TGD+A +G I IS +LE+ HP V++ AV+
Sbjct: 401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA 460
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
IPH + E P AVVVP+ E + ++ + VF + IPRT +GK
Sbjct: 461 IPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFA---EEIPRTSAGK 517
Query: 108 VKRKDLNE 115
++ L E
Sbjct: 518 FLKRALRE 525
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 104 bits (260), Expect = 8e-28
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
+GD A R DG ++I + E+ES HP + + AV+GI
Sbjct: 487 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 546
Query: 49 PHDVFGELPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
PH + G+ A V + E EV+ +V ++ P + D +P+T S
Sbjct: 547 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWT---DSLPKTRS 603
Query: 106 GKVKRKDLNE 115
GK+ R+ L +
Sbjct: 604 GKIMRRILRK 613
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 98.8 bits (245), Expect = 6e-26
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 27/137 (19%)
Query: 3 DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
G+ TGD A + DG +I +S E+E+ + P V + AV+G
Sbjct: 477 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 536
Query: 49 PHDVFGELPAAVVVPKPNSSVTA----------EEVKQFVEDQVNPSKRLSGGVFLCSFD 98
D+ G+ AA VV K SS + + + V + P + + D
Sbjct: 537 NDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV---D 593
Query: 99 FIPRTMSGKVKRKDLNE 115
+P+T SGK+ R+ L +
Sbjct: 594 DLPKTRSGKIMRRILRK 610
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 97.4 bits (241), Expect = 2e-25
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 4 DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
DGW T D+A P+GT I I P E+E + P V +V VIG+
Sbjct: 377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 50 HDVFGELPAAVVVPKPNSSVTAEEVKQFV-EDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
+G+ A VVP+ +++A+ + F ++ KR L D +P+ KV
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL---DQLPKNALNKV 493
Query: 109 KRKDLNE 115
R+ L +
Sbjct: 494 LRRQLVQ 500
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 96.1 bits (238), Expect = 6e-25
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 2 LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
+ + TGD A L DG + E+ESI +H + + AV
Sbjct: 387 VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV 446
Query: 48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
A V + + + E+++QF +++ S + L D +P T +GK
Sbjct: 447 HKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQL---DKMPLTSNGK 501
Query: 108 VKRKDLNE 115
+ RK L E
Sbjct: 502 IDRKQLPE 509
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 86.6 bits (213), Expect = 1e-21
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 1 MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 60
L DG++ A + ++ E+E+ HP V D A++ +P GE
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 61 VVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
++P+ + A E+K F+ ++ + ++ V + P+T GKV +K L E
Sbjct: 476 IIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFV--ESFPQTGVGKVSKKALRE 527
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
{Acanthamoeba castellanii [TaxId: 5755]}
Length = 125
Score = 26.3 bits (58), Expect = 0.72
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 40 VEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF 99
V A++G D G A +VT + N +GG L +
Sbjct: 16 VTQAAILG--LD--GNTWAT----SAGFAVTPAQGTTLAGAFNNADAIRAGGFDLAGVHY 67
Query: 100 I 100
+
Sbjct: 68 V 68
>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 70
Score = 24.9 bits (54), Expect = 1.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 55 ELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGG 91
E+P VV K N + +E + F D + + + GG
Sbjct: 34 EIPIETVVVKKNGQIVIDEEEIFDGDIIEVIRVIYGG 70
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF
{Thermus thermophilus [TaxId: 274]}
Length = 104
Score = 25.4 bits (56), Expect = 1.3
Identities = 8/76 (10%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 20 GTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE-------------LPAAVVVPKPN 66
+ S E +S+ + A++ + + + LP + +
Sbjct: 19 EGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLK 78
Query: 67 SSVTAEEVKQFVEDQV 82
+ +V+ ++ + V
Sbjct: 79 EAFQGHDVEGYMRELV 94
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 24.8 bits (54), Expect = 2.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 65 PNSSVTAEEVKQFVEDQVNPSKRLSGGVFLC 95
S+ E+ + V+ NP+ S G+ +
Sbjct: 33 GGLSLQPNEIGEIVQGFDNPAGLQSNGLHIQ 63
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 184
Score = 24.8 bits (53), Expect = 3.0
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 37 HPDVEDVAVIGIP-HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLS 89
V + I +D G + AA+ + P+S +T + E + ++ +S
Sbjct: 124 EEHVVGLNCIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDIS 177
>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
(Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 24.4 bits (53), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 31 ESIFRQHPDVEDVAVIGIPHDV------FGELPAAVV 61
E I + HPD + ++G+ HD+ FGE AVV
Sbjct: 68 EGIRKAHPDKDWFHLVGLLHDLGKVLALFGEPQWAVV 104
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 23.5 bits (51), Expect = 5.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 48 IPHDVFGELPAAVVVPKP 65
IPH++ E A+ +V KP
Sbjct: 3 IPHEIEVEFGASKIVLKP 20
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase
{Escherichia coli [TaxId: 562]}
Length = 223
Score = 24.1 bits (51), Expect = 5.4
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 1 MLDDDGW--LHTGDLAYRLPDGTHFIISP 27
L L G+++ + F+I P
Sbjct: 15 ALPKHNLVTLTWGNVSAVDRERGVFVIKP 43
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 86
Score = 23.5 bits (51), Expect = 5.6
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 71 AEEVKQFVEDQVNPSKRL 88
+E+KQ + D ++P + L
Sbjct: 68 PKELKQRIRDLIDPERDL 85
>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 73
Score = 23.2 bits (50), Expect = 5.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 41 EDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 76
+ + +GI DVFG + V KP S V +
Sbjct: 33 KRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGE 68
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 81
Score = 23.1 bits (50), Expect = 6.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 48 IPHDVFGELPAAVVVPKP 65
+ H V G + V +P
Sbjct: 3 LQHPVKGVHTGSRVFMQP 20
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II,
mitochondrial [TaxId: 9606]}
Length = 306
Score = 24.1 bits (51), Expect = 6.3
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 42 DVAVIGIPHD 51
VAVIG P
Sbjct: 2 SVAVIGAPFS 11
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 71
Score = 23.1 bits (50), Expect = 6.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 48 IPHDVFGELPAAVVVPKP 65
IPH+V G A ++ KP
Sbjct: 4 IPHEVIGHFGAGEIILKP 21
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
5693]}
Length = 298
Score = 24.1 bits (51), Expect = 6.5
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 29 ELESIFRQHPDVE--DVAVIGIPHD 51
L S+F E D+ +IG P+D
Sbjct: 5 RLLSLFS-AQREEDADIVIIGFPYD 28
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId:
1299]}
Length = 303
Score = 23.7 bits (50), Expect = 7.3
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 42 DVAVIGIPHD 51
DVA +G+P D
Sbjct: 28 DVAALGVPFD 37
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 301
Score = 23.7 bits (50), Expect = 9.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 42 DVAVIGIPHD 51
DV VIG P+D
Sbjct: 23 DVVVIGAPYD 32
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 152
Score = 23.2 bits (50), Expect = 9.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 65 PNSSVTAEEVKQFV 78
SSVTAEE K+F+
Sbjct: 134 SGSSVTAEEAKKFL 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.422
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,147
Number of extensions: 22214
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 28
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)