Query psy4977
Match_columns 63
No_of_seqs 129 out of 1021
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:40:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0031|consensus 99.4 6E-13 1.3E-17 82.3 4.7 61 1-63 1-61 (171)
2 PF00036 EF-hand_1: EF hand; 99.0 1.4E-09 3E-14 50.2 4.0 29 35-63 1-29 (29)
3 PF13405 EF-hand_6: EF-hand do 98.8 1.1E-08 2.4E-13 47.2 4.0 29 35-63 1-30 (31)
4 COG5126 FRQ1 Ca2+-binding prot 98.5 3.2E-07 7E-12 56.9 4.5 42 22-63 8-49 (160)
5 PF13202 EF-hand_5: EF hand; P 98.4 7.6E-07 1.7E-11 39.6 3.5 25 36-60 1-25 (25)
6 KOG0030|consensus 98.4 3.6E-07 7.7E-12 56.0 3.2 37 27-63 4-40 (152)
7 smart00027 EH Eps15 homology d 98.3 1.6E-06 3.5E-11 48.7 4.9 35 28-62 4-38 (96)
8 KOG0027|consensus 98.2 2.9E-06 6.3E-11 51.0 4.6 36 28-63 2-37 (151)
9 KOG0027|consensus 98.2 2.2E-06 4.8E-11 51.6 3.5 32 32-63 83-114 (151)
10 PF13499 EF-hand_7: EF-hand do 98.2 3.9E-06 8.5E-11 43.7 4.0 29 35-63 1-29 (66)
11 COG5126 FRQ1 Ca2+-binding prot 98.1 4.3E-06 9.3E-11 51.9 3.5 33 31-63 89-121 (160)
12 smart00054 EFh EF-hand, calciu 98.0 8.8E-06 1.9E-10 34.6 3.3 29 35-63 1-29 (29)
13 cd00213 S-100 S-100: S-100 dom 98.0 1.5E-05 3.2E-10 43.9 4.1 33 30-62 4-38 (88)
14 PTZ00183 centrin; Provisional 97.9 2E-05 4.2E-10 46.5 4.2 38 25-62 8-45 (158)
15 cd05022 S-100A13 S-100A13: S-1 97.8 4.2E-05 9.1E-10 43.2 4.4 33 30-62 4-37 (89)
16 cd05027 S-100B S-100B: S-100B 97.8 4.8E-05 1E-09 42.7 4.4 32 31-62 5-38 (88)
17 cd05025 S-100A1 S-100A1: S-100 97.8 6.5E-05 1.4E-09 41.8 4.4 31 32-62 7-39 (92)
18 cd05031 S-100A10_like S-100A10 97.7 0.00012 2.6E-09 41.0 4.3 32 31-62 5-38 (94)
19 PTZ00184 calmodulin; Provision 97.6 9.6E-05 2.1E-09 42.8 4.0 36 27-62 4-39 (149)
20 cd00052 EH Eps15 homology doma 97.6 5.8E-05 1.3E-09 38.9 2.7 26 37-62 2-27 (67)
21 PF13833 EF-hand_8: EF-hand do 97.6 0.00016 3.5E-09 36.3 4.1 28 35-62 26-53 (54)
22 KOG0028|consensus 97.6 0.00013 2.9E-09 45.6 3.9 42 22-63 21-62 (172)
23 cd05026 S-100Z S-100Z: S-100Z 97.5 0.00023 5E-09 40.0 4.4 33 30-62 6-40 (93)
24 KOG0041|consensus 97.5 0.00018 3.8E-09 46.8 3.9 39 25-63 90-128 (244)
25 PF13499 EF-hand_7: EF-hand do 97.3 0.00097 2.1E-08 34.5 4.6 27 34-60 40-66 (66)
26 cd00252 SPARC_EC SPARC_EC; ext 97.3 0.00056 1.2E-08 40.3 4.0 31 29-59 43-73 (116)
27 cd00051 EFh EF-hand, calcium b 97.2 0.00053 1.2E-08 33.5 3.2 26 36-61 2-27 (63)
28 KOG0037|consensus 97.2 0.00052 1.1E-08 44.6 3.6 31 33-63 123-153 (221)
29 KOG0030|consensus 97.2 0.00046 1E-08 42.4 3.2 35 29-63 83-117 (152)
30 KOG0034|consensus 97.1 0.00067 1.5E-08 43.0 3.1 30 34-63 104-133 (187)
31 KOG0044|consensus 97.0 0.0005 1.1E-08 43.8 2.0 29 34-62 100-128 (193)
32 cd05029 S-100A6 S-100A6: S-100 96.9 0.0029 6.3E-08 35.4 4.3 32 30-61 6-39 (88)
33 KOG0028|consensus 96.8 0.0018 3.8E-08 40.6 3.3 32 32-63 104-135 (172)
34 cd05030 calgranulins Calgranul 96.7 0.0027 5.8E-08 35.3 3.5 30 33-62 50-79 (88)
35 PTZ00184 calmodulin; Provision 96.6 0.0035 7.6E-08 36.2 3.7 29 34-62 84-112 (149)
36 PTZ00183 centrin; Provisional 96.6 0.0033 7.2E-08 36.8 3.6 28 34-61 90-117 (158)
37 cd05026 S-100Z S-100Z: S-100Z 96.4 0.0053 1.1E-07 34.4 3.2 30 33-62 52-81 (93)
38 PLN02964 phosphatidylserine de 96.4 0.0045 9.7E-08 45.5 3.6 30 33-62 214-243 (644)
39 KOG0031|consensus 96.3 0.0055 1.2E-07 38.3 3.3 30 33-62 100-129 (171)
40 cd05023 S-100A11 S-100A11: S-1 96.3 0.013 2.8E-07 32.8 4.4 33 30-62 5-39 (89)
41 cd05022 S-100A13 S-100A13: S-1 96.2 0.0072 1.6E-07 34.0 3.2 29 34-62 47-75 (89)
42 PF14658 EF-hand_9: EF-hand do 96.2 0.005 1.1E-07 33.3 2.2 25 39-63 3-27 (66)
43 KOG0040|consensus 96.1 0.0083 1.8E-07 48.1 4.0 36 28-63 2247-2282(2399)
44 cd05029 S-100A6 S-100A6: S-100 96.1 0.0097 2.1E-07 33.2 3.2 29 34-62 51-79 (88)
45 cd00252 SPARC_EC SPARC_EC; ext 96.0 0.011 2.3E-07 34.8 3.4 25 36-60 82-106 (116)
46 cd00051 EFh EF-hand, calcium b 96.0 0.015 3.2E-07 28.1 3.4 28 33-60 35-62 (63)
47 cd05023 S-100A11 S-100A11: S-1 96.0 0.011 2.3E-07 33.1 3.1 29 34-62 52-80 (89)
48 PLN02964 phosphatidylserine de 95.9 0.013 2.7E-07 43.2 4.0 25 27-51 136-160 (644)
49 KOG0038|consensus 95.8 0.0072 1.6E-07 37.8 2.1 39 24-63 99-137 (189)
50 cd00052 EH Eps15 homology doma 95.8 0.016 3.6E-07 29.4 3.2 28 34-61 33-60 (67)
51 cd05025 S-100A1 S-100A1: S-100 95.8 0.016 3.4E-07 32.1 3.3 29 34-62 52-80 (92)
52 cd05031 S-100A10_like S-100A10 95.7 0.018 4E-07 32.0 3.2 29 34-62 51-79 (94)
53 PRK12309 transaldolase/EF-hand 95.3 0.04 8.7E-07 38.4 4.5 25 36-60 359-383 (391)
54 KOG0046|consensus 95.1 0.04 8.7E-07 40.2 4.2 38 24-62 9-46 (627)
55 cd00213 S-100 S-100: S-100 dom 95.1 0.037 8E-07 30.1 3.2 30 33-62 50-79 (88)
56 cd05027 S-100B S-100B: S-100B 94.9 0.043 9.3E-07 30.6 3.2 28 34-61 51-78 (88)
57 PF14788 EF-hand_10: EF hand; 94.9 0.044 9.6E-07 28.2 3.0 29 35-63 22-50 (51)
58 smart00027 EH Eps15 homology d 94.7 0.054 1.2E-06 30.1 3.3 29 34-62 44-72 (96)
59 KOG0034|consensus 94.4 0.097 2.1E-06 33.2 4.2 32 30-61 142-174 (187)
60 PF08726 EFhand_Ca_insen: Ca2+ 94.0 0.092 2E-06 28.5 3.1 27 34-61 6-32 (69)
61 PF12763 EF-hand_4: Cytoskelet 93.8 0.078 1.7E-06 30.6 2.7 28 34-61 43-70 (104)
62 PF12763 EF-hand_4: Cytoskelet 93.7 0.18 3.9E-06 29.1 4.1 34 26-60 2-35 (104)
63 PRK12309 transaldolase/EF-hand 93.6 0.07 1.5E-06 37.2 2.7 25 33-57 333-357 (391)
64 cd05024 S-100A10 S-100A10: A s 93.4 0.14 3E-06 29.2 3.2 30 33-62 47-76 (91)
65 KOG0044|consensus 93.3 0.1 2.2E-06 33.3 2.9 26 36-61 66-91 (193)
66 cd05030 calgranulins Calgranul 93.0 0.27 5.9E-06 27.1 4.0 32 30-61 4-37 (88)
67 KOG0036|consensus 92.8 0.28 6E-06 35.0 4.6 36 28-63 8-43 (463)
68 PF10591 SPARC_Ca_bdg: Secrete 92.2 0.036 7.8E-07 32.3 -0.3 33 28-60 48-80 (113)
69 PF14658 EF-hand_9: EF-hand do 92.0 0.43 9.4E-06 25.7 3.8 28 35-62 36-64 (66)
70 KOG2643|consensus 92.0 0.075 1.6E-06 38.0 1.1 26 35-60 234-259 (489)
71 KOG0036|consensus 91.7 0.26 5.7E-06 35.1 3.5 33 30-62 78-110 (463)
72 KOG2643|consensus 90.3 0.11 2.5E-06 37.1 0.7 25 37-61 428-452 (489)
73 KOG2871|consensus 89.5 0.41 9E-06 33.8 2.9 31 33-63 308-338 (449)
74 PF10591 SPARC_Ca_bdg: Secrete 88.1 0.86 1.9E-05 26.5 3.2 24 36-59 90-113 (113)
75 KOG0377|consensus 87.9 0.66 1.4E-05 33.7 3.1 27 35-61 548-574 (631)
76 KOG1707|consensus 87.1 1.1 2.4E-05 33.2 3.9 36 27-62 308-343 (625)
77 KOG0377|consensus 84.3 1.9 4.1E-05 31.5 3.9 31 32-62 462-492 (631)
78 PF09069 EF-hand_3: EF-hand; 84.0 2.1 4.5E-05 24.3 3.3 29 33-62 2-30 (90)
79 PF00404 Dockerin_1: Dockerin 83.8 1.1 2.5E-05 18.8 1.7 16 44-59 1-16 (21)
80 PF09068 EF-hand_2: EF hand; 83.6 2.3 5.1E-05 25.3 3.6 28 36-63 99-126 (127)
81 PF09279 EF-hand_like: Phospho 82.8 3.5 7.5E-05 22.0 3.8 27 35-62 1-27 (83)
82 KOG2562|consensus 82.7 0.47 1E-05 34.1 0.4 34 28-61 345-378 (493)
83 KOG4251|consensus 81.7 1.6 3.4E-05 29.7 2.6 30 30-59 136-165 (362)
84 KOG0038|consensus 80.7 4.6 0.0001 25.4 4.2 37 25-61 139-176 (189)
85 KOG2301|consensus 80.6 1.4 3.1E-05 35.8 2.4 37 27-63 1410-1446(1592)
86 PF12174 RST: RCD1-SRO-TAF4 (R 80.6 5.6 0.00012 21.4 4.1 40 20-62 14-53 (70)
87 PF01023 S_100: S-100/ICaBP ty 80.3 5.3 0.00012 19.5 4.8 31 31-61 3-35 (44)
88 KOG0751|consensus 79.1 2.7 5.8E-05 31.1 3.2 27 36-62 110-136 (694)
89 KOG0035|consensus 77.8 2.7 5.9E-05 32.5 3.0 39 25-63 738-776 (890)
90 KOG0037|consensus 75.7 3.6 7.9E-05 27.0 2.8 30 32-61 55-84 (221)
91 KOG1955|consensus 75.0 3.6 7.9E-05 30.5 2.9 30 32-61 263-292 (737)
92 PF12486 DUF3702: ImpA domain 74.9 6.8 0.00015 24.1 3.7 31 30-60 65-95 (148)
93 PF05042 Caleosin: Caleosin re 74.3 3.4 7.4E-05 26.2 2.4 30 34-63 7-36 (174)
94 PF05042 Caleosin: Caleosin re 74.0 6.8 0.00015 24.8 3.6 43 20-62 82-124 (174)
95 PF08414 NADPH_Ox: Respiratory 73.5 9.5 0.0002 22.1 3.9 49 11-61 3-55 (100)
96 cd05024 S-100A10 S-100A10: A s 71.2 14 0.0003 20.9 4.2 30 31-61 5-34 (91)
97 PF07879 PHB_acc_N: PHB/PHA ac 69.3 5.1 0.00011 21.5 2.0 22 41-62 10-31 (64)
98 KOG4223|consensus 68.8 9.7 0.00021 26.4 3.7 31 31-61 74-104 (325)
99 KOG4347|consensus 65.8 7.4 0.00016 29.3 2.9 27 36-62 557-583 (671)
100 KOG4065|consensus 65.6 10 0.00023 22.9 3.0 31 28-58 110-141 (144)
101 KOG1707|consensus 64.5 10 0.00022 28.4 3.3 33 27-59 188-220 (625)
102 PF15017 AF1Q: Drug resistance 64.1 4 8.6E-05 23.1 1.0 16 44-59 69-84 (87)
103 KOG3555|consensus 64.1 5.6 0.00012 28.1 1.9 33 28-60 244-276 (434)
104 KOG4223|consensus 62.0 6.8 0.00015 27.1 2.0 27 34-60 163-189 (325)
105 KOG4666|consensus 60.7 14 0.0003 26.1 3.3 29 33-61 295-323 (412)
106 KOG4251|consensus 60.6 14 0.00031 25.2 3.3 29 33-61 100-128 (362)
107 PF10668 Phage_terminase: Phag 57.5 9.9 0.00022 20.0 1.8 22 38-60 11-32 (60)
108 KOG0751|consensus 57.1 9.2 0.0002 28.4 2.1 33 29-61 174-206 (694)
109 KOG3866|consensus 55.8 9.9 0.00022 26.7 2.0 24 38-61 248-271 (442)
110 KOG4004|consensus 55.8 7.3 0.00016 25.7 1.3 25 36-60 224-248 (259)
111 KOG0042|consensus 55.1 12 0.00026 28.1 2.4 35 28-62 587-621 (680)
112 PF00046 Homeobox: Homeobox do 53.5 26 0.00057 17.0 3.4 28 28-60 7-34 (57)
113 cd00086 homeodomain Homeodomai 50.5 29 0.00064 16.6 3.8 29 28-61 7-35 (59)
114 TIGR01848 PHA_reg_PhaR polyhyd 48.2 18 0.00039 21.2 2.0 21 41-61 10-30 (107)
115 PF14297 DUF4373: Domain of un 46.2 26 0.00056 19.0 2.4 30 27-56 57-86 (87)
116 KOG2463|consensus 45.9 12 0.00025 26.3 1.1 32 29-62 164-195 (376)
117 COG2818 Tag 3-methyladenine DN 45.5 11 0.00023 24.3 0.8 30 32-61 53-82 (188)
118 PF09851 SHOCT: Short C-termin 45.3 31 0.00067 15.4 3.5 25 31-61 3-27 (31)
119 PF03250 Tropomodulin: Tropomo 43.5 44 0.00095 20.7 3.3 32 17-48 13-44 (147)
120 PF09373 PMBR: Pseudomurein-bi 39.2 39 0.00084 15.3 2.1 15 47-61 1-15 (33)
121 TIGR01565 homeo_ZF_HD homeobox 37.7 62 0.0013 16.7 4.0 29 27-60 7-39 (58)
122 PF07483 W_rich_C: Tryptophan- 36.9 34 0.00075 20.0 2.0 22 29-51 87-108 (109)
123 PF05872 DUF853: Bacterial pro 36.4 82 0.0018 23.2 4.2 35 27-61 121-155 (502)
124 KOG4578|consensus 36.0 27 0.00058 24.7 1.7 23 38-60 374-396 (421)
125 KOG1955|consensus 35.5 53 0.0012 24.6 3.2 35 27-61 224-258 (737)
126 KOG4403|consensus 35.2 38 0.00082 24.8 2.3 29 33-61 67-95 (575)
127 PF02758 PYRIN: PAAD/DAPIN/Pyr 34.7 65 0.0014 17.3 2.8 34 24-57 8-41 (83)
128 PF13720 Acetyltransf_11: Udp 34.7 49 0.0011 18.0 2.4 19 27-45 27-45 (83)
129 PF06226 DUF1007: Protein of u 34.6 33 0.00072 21.8 1.9 20 42-61 58-77 (212)
130 KOG2243|consensus 34.2 32 0.0007 29.5 2.0 24 38-61 4061-4084(5019)
131 KOG4666|consensus 34.1 31 0.00068 24.4 1.8 30 31-60 256-285 (412)
132 PF06569 DUF1128: Protein of u 32.9 88 0.0019 17.0 3.3 35 26-62 31-65 (71)
133 KOG0169|consensus 32.8 67 0.0015 24.8 3.4 32 31-62 133-164 (746)
134 PF08987 DUF1892: Protein of u 32.4 32 0.00069 20.4 1.4 24 29-52 47-74 (115)
135 PF13050 DUF3911: Protein of u 31.3 65 0.0014 17.5 2.4 18 30-47 10-27 (77)
136 PF08100 Dimerisation: Dimeris 30.9 32 0.00068 17.3 1.1 21 39-59 11-31 (51)
137 PF05383 La: La domain; Inter 30.8 74 0.0016 16.4 2.5 19 38-56 19-37 (61)
138 cd06404 PB1_aPKC PB1 domain is 29.7 58 0.0012 18.3 2.1 19 33-51 58-76 (83)
139 COG2024 Phenylalanyl-tRNA synt 29.0 89 0.0019 22.8 3.3 40 17-59 111-150 (536)
140 KOG1029|consensus 27.9 54 0.0012 25.9 2.2 32 29-60 190-221 (1118)
141 COG3413 Predicted DNA binding 27.6 1.3E+02 0.0027 18.9 3.6 32 27-60 155-188 (215)
142 KOG0040|consensus 27.5 75 0.0016 27.2 3.0 27 35-61 2297-2323(2399)
143 PF11590 DNAPolymera_Pol: DNA 26.6 91 0.002 15.2 2.2 14 30-43 27-40 (41)
144 COG2938 Uncharacterized conser 26.0 1E+02 0.0023 17.5 2.7 37 25-61 41-83 (94)
145 PF08339 RTX_C: RTX C-terminal 25.9 69 0.0015 19.7 2.1 19 42-61 53-71 (145)
146 TIGR03296 M6dom_TIGR03296 M6 f 25.8 28 0.0006 23.1 0.4 16 39-54 91-106 (286)
147 PF14842 FliG_N: FliG N-termin 25.7 1.4E+02 0.0029 16.9 3.6 20 22-41 24-43 (108)
148 TIGR00624 tag DNA-3-methyladen 25.5 33 0.00072 21.7 0.7 30 32-61 51-80 (179)
149 cd07909 YciF YciF bacterial st 25.0 78 0.0017 19.2 2.3 23 29-51 45-67 (147)
150 KOG0494|consensus 24.9 69 0.0015 22.0 2.1 15 28-42 148-162 (332)
151 PRK10353 3-methyl-adenine DNA 24.8 36 0.00078 21.7 0.8 30 32-61 52-81 (187)
152 TIGR02574 stabl_TIGR02574 puta 24.7 1.1E+02 0.0024 15.6 4.2 35 27-61 27-61 (63)
153 PF14164 YqzH: YqzH-like prote 24.2 1.3E+02 0.0028 16.1 2.7 25 36-60 10-35 (64)
154 PLN02230 phosphoinositide phos 24.1 1.3E+02 0.0028 22.6 3.5 30 32-62 27-56 (598)
155 PHA02142 putative RNA ligase 22.8 28 0.00062 24.4 0.0 24 39-62 274-297 (366)
156 KOG1681|consensus 22.4 95 0.002 21.1 2.4 24 25-48 43-66 (292)
157 PF01325 Fe_dep_repress: Iron 22.3 1.3E+02 0.0027 15.3 3.5 31 28-60 2-32 (60)
158 PF08730 Rad33: Rad33; InterP 22.2 2.2E+02 0.0047 18.1 4.0 39 24-63 4-42 (170)
159 PF03979 Sigma70_r1_1: Sigma-7 21.1 74 0.0016 17.1 1.5 15 47-61 18-32 (82)
160 PRK06253 O-phosphoseryl-tRNA s 20.5 2.1E+02 0.0045 21.3 4.0 39 19-60 113-152 (529)
161 KOG4589|consensus 20.4 1.1E+02 0.0023 20.2 2.3 42 6-47 21-62 (232)
No 1
>KOG0031|consensus
Probab=99.38 E-value=6e-13 Score=82.26 Aligned_cols=61 Identities=77% Similarity=1.127 Sum_probs=54.5
Q ss_pred CCcccccCCCcchhHHHHhhhchHhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 1 MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
|||+|..+++.. ++.+++.|++++++++.|++++++||.++|.|++|.|+.+||++++.+|
T Consensus 1 mas~~~~~r~~~--~ra~rasSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl 61 (171)
T KOG0031|consen 1 MASKKASKRRVA--KRAKRASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL 61 (171)
T ss_pred CCccchhhhhHH--hhhccccchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHc
Confidence 778877665544 7788999999999999999999999999999999999999999998764
No 2
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.97 E-value=1.4e-09 Score=50.17 Aligned_cols=29 Identities=41% Similarity=0.708 Sum_probs=27.1
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+++++|+.||.|++|+|+.+|+..+|+.|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999999875
No 3
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.81 E-value=1.1e-08 Score=47.25 Aligned_cols=29 Identities=52% Similarity=0.895 Sum_probs=25.7
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHH-hC
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLA-SL 63 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~-~l 63 (63)
+++++|+.||.+++|+|+.+||..+|+ ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 478999999999999999999999998 54
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.46 E-value=3.2e-07 Score=56.90 Aligned_cols=42 Identities=40% Similarity=0.714 Sum_probs=38.5
Q ss_pred chHhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 22 SNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 22 ~~~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
....++++++++++++++|..||++++|.|+..+|..+|+++
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l 49 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSL 49 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc
Confidence 555778999999999999999999999999999999999864
No 5
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.38 E-value=7.6e-07 Score=39.55 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=22.5
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
|+++|..+|.|++|.|+..|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5789999999999999999998764
No 6
>KOG0030|consensus
Probab=98.38 E-value=3.6e-07 Score=55.95 Aligned_cols=37 Identities=38% Similarity=0.640 Sum_probs=34.6
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
.++++++.+++++|.+||..++|+|+..+++++|++|
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal 40 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL 40 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHh
Confidence 4678899999999999999999999999999999975
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.32 E-value=1.6e-06 Score=48.75 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
++++++..++++|..||.+++|+|+..++..+|+.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 67889999999999999999999999999999864
No 8
>KOG0027|consensus
Probab=98.21 E-value=2.9e-06 Score=51.03 Aligned_cols=36 Identities=42% Similarity=0.657 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
++.+++.+++++|..||.+++|+|+..+|+.+|+.+
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l 37 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSL 37 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Confidence 567889999999999999999999999999999865
No 9
>KOG0027|consensus
Probab=98.18 E-value=2.2e-06 Score=51.55 Aligned_cols=32 Identities=41% Similarity=0.753 Sum_probs=28.8
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
..++++++|+.||.+++|+|+..||+.+|..+
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 35689999999999999999999999999753
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.17 E-value=3.9e-06 Score=43.72 Aligned_cols=29 Identities=45% Similarity=0.778 Sum_probs=25.3
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
.++++|..||.+++|+|+.+||..++..+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~ 29 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL 29 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh
Confidence 37889999999999999999999988753
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.08 E-value=4.3e-06 Score=51.90 Aligned_cols=33 Identities=33% Similarity=0.695 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 31 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 31 ~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+..++|++||+.||.|++|+|+..+|+.++..+
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh
Confidence 446789999999999999999999999998753
No 12
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=98.05 E-value=8.8e-06 Score=34.62 Aligned_cols=29 Identities=45% Similarity=0.794 Sum_probs=25.7
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+++.+|..+|.+++|.|+..++..+++.+
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 29 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHhC
Confidence 36789999999999999999999998764
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.98 E-value=1.5e-05 Score=43.94 Aligned_cols=33 Identities=15% Similarity=0.396 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHhhcC--CCCCceeHHHHHHHHHh
Q psy4977 30 QAQIQNFKEAFNMIDQ--NRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~--~~~G~I~~~el~~~l~~ 62 (63)
+++++.++++|..||. +++|+|+..+|..+++.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 5788999999999999 89999999999998863
No 14
>PTZ00183 centrin; Provisional
Probab=97.92 E-value=2e-05 Score=46.45 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=34.0
Q ss_pred hhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 25 FAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 25 ~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
...++++++.+++.+|..+|.+++|+|+..|+..++..
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~ 45 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRS 45 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 34588999999999999999999999999999988864
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.84 E-value=4.2e-05 Score=43.17 Aligned_cols=33 Identities=9% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhHhhcC-CCCCceeHHHHHHHHHh
Q psy4977 30 QAQIQNFKEAFNMIDQ-NRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~-~~~G~I~~~el~~~l~~ 62 (63)
+.-+..+.++|..||. +++|+|+..||+.+|..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 3456778889999988 88889999998888865
No 16
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.82 E-value=4.8e-05 Score=42.66 Aligned_cols=32 Identities=13% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHhhc-CCCCC-ceeHHHHHHHHHh
Q psy4977 31 AQIQNFKEAFNMID-QNRDG-FIDKEDLHDMLAS 62 (63)
Q Consensus 31 ~~~~~l~~aF~~~D-~~~~G-~I~~~el~~~l~~ 62 (63)
.-+..++++|+.|| .+|+| +|+..||+.+|+.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 44678999999998 79999 6999999999975
No 17
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.76 E-value=6.5e-05 Score=41.84 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=27.1
Q ss_pred HHHHHHHHhHhhc-CCCCC-ceeHHHHHHHHHh
Q psy4977 32 QIQNFKEAFNMID-QNRDG-FIDKEDLHDMLAS 62 (63)
Q Consensus 32 ~~~~l~~aF~~~D-~~~~G-~I~~~el~~~l~~ 62 (63)
-++.++++|..|| .+++| .|+..||+.+|+.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 3577999999997 99999 5999999999863
No 18
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.65 E-value=0.00012 Score=40.98 Aligned_cols=32 Identities=6% Similarity=0.282 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHhhcC-CC-CCceeHHHHHHHHHh
Q psy4977 31 AQIQNFKEAFNMIDQ-NR-DGFIDKEDLHDMLAS 62 (63)
Q Consensus 31 ~~~~~l~~aF~~~D~-~~-~G~I~~~el~~~l~~ 62 (63)
.-+..+.++|..||. ++ +|+|+..||..+|+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 346779999999997 87 699999999998864
No 19
>PTZ00184 calmodulin; Provisional
Probab=97.65 E-value=9.6e-05 Score=42.83 Aligned_cols=36 Identities=36% Similarity=0.659 Sum_probs=30.6
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+++++++.++..|..+|.+++|.|+..|+..++..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~ 39 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS 39 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 467888889999999999999999999999887753
No 20
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.63 E-value=5.8e-05 Score=38.88 Aligned_cols=26 Identities=23% Similarity=0.550 Sum_probs=20.6
Q ss_pred HHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 37 KEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 37 ~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+++|..+|.+++|.|+..|+..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 56788888888888888888877754
No 21
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.60 E-value=0.00016 Score=36.31 Aligned_cols=28 Identities=21% Similarity=0.512 Sum_probs=25.1
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
++..+|..+|.+++|+|+..|+..++..
T Consensus 26 e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 26 EVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3788999999999999999999988864
No 22
>KOG0028|consensus
Probab=97.55 E-value=0.00013 Score=45.61 Aligned_cols=42 Identities=31% Similarity=0.441 Sum_probs=36.2
Q ss_pred chHhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 22 SNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 22 ~~~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
...-..+++++..+++.+|..||.++.|+|++.+|..+++++
T Consensus 21 ~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmral 62 (172)
T KOG0028|consen 21 ASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRAL 62 (172)
T ss_pred CCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHc
Confidence 334556889999999999999999999999999998888764
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.52 E-value=0.00023 Score=40.02 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHhhc-CCCCC-ceeHHHHHHHHHh
Q psy4977 30 QAQIQNFKEAFNMID-QNRDG-FIDKEDLHDMLAS 62 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D-~~~~G-~I~~~el~~~l~~ 62 (63)
+.-+..++++|..|| .||+| +|+..||+.+|..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 344678999999999 78998 5999999999853
No 24
>KOG0041|consensus
Probab=97.48 E-value=0.00018 Score=46.76 Aligned_cols=39 Identities=38% Similarity=0.718 Sum_probs=35.3
Q ss_pred hhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 25 FAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 25 ~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
++.++..+|+.+..+|..||.+.+|+|+..||..+|..|
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 556788999999999999999999999999999998764
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.27 E-value=0.00097 Score=34.47 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.7
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
+.+..+|..+|.+++|.|+..|+..++
T Consensus 40 ~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 40 EMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 356888999999999999999998764
No 26
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.26 E-value=0.00056 Score=40.30 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHhHhhcCCCCCceeHHHHHHH
Q psy4977 29 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDM 59 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~ 59 (63)
.+....++..+|..+|.|++|+|+.+||..+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~ 73 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPI 73 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHH
Confidence 4667788999999999999999999999865
No 27
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.22 E-value=0.00053 Score=33.49 Aligned_cols=26 Identities=35% Similarity=0.705 Sum_probs=17.1
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+..+|..+|.+++|.|+..|+..++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45566666766777777777666654
No 28
>KOG0037|consensus
Probab=97.20 E-value=0.00052 Score=44.59 Aligned_cols=31 Identities=32% Similarity=0.667 Sum_probs=27.5
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+...+++|..||+|++|.|+..||+.+|..|
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~ 153 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQL 153 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHc
Confidence 4457889999999999999999999999764
No 29
>KOG0030|consensus
Probab=97.19 E-value=0.00046 Score=42.41 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 29 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
.+...+++.+.+++||++++|+|...||+++|..|
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH
Confidence 34567789999999999999999999999999754
No 30
>KOG0034|consensus
Probab=97.06 E-value=0.00067 Score=42.96 Aligned_cols=30 Identities=33% Similarity=0.698 Sum_probs=27.4
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+.++-||++||.+++|+|+.+|+..++..+
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 578999999999999999999999998753
No 31
>KOG0044|consensus
Probab=96.98 E-value=0.0005 Score=43.81 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=23.3
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+.+..+|.+||.||+|+|+..|+-.++.+
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 34667899999999999999888877764
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.85 E-value=0.0029 Score=35.36 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhHhhcC-CC-CCceeHHHHHHHHH
Q psy4977 30 QAQIQNFKEAFNMIDQ-NR-DGFIDKEDLHDMLA 61 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~-~~-~G~I~~~el~~~l~ 61 (63)
+..+..+.+.|..||. +| +|+|+..||+.+|.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~ 39 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQ 39 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHH
Confidence 5667889999999997 67 89999999999985
No 33
>KOG0028|consensus
Probab=96.79 E-value=0.0018 Score=40.64 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=28.7
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
..++++.+|++||.+++|.|+..+|+.++..|
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHh
Confidence 67889999999999999999999999887654
No 34
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.73 E-value=0.0027 Score=35.30 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=25.9
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+++.++|..+|.+++|.|+.+++..++..
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 456888999999999999999999888754
No 35
>PTZ00184 calmodulin; Provisional
Probab=96.64 E-value=0.0035 Score=36.17 Aligned_cols=29 Identities=31% Similarity=0.737 Sum_probs=24.7
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
..+..+|..||.+++|+|+..++..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 45788999999999999999999887753
No 36
>PTZ00183 centrin; Provisional
Probab=96.62 E-value=0.0033 Score=36.83 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=24.3
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+.++.+|..+|.+++|+|+..|+..++.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4678899999999999999999988775
No 37
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.38 E-value=0.0053 Score=34.43 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.7
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
..++.+.+..+|.|++|.|+..|+..++..
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 346788899999999999999999888764
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=96.37 E-value=0.0045 Score=45.52 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=25.9
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+++.++|+.||.|++|+|+.+||..+|..
T Consensus 214 eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 214 ANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 456899999999999999999999988764
No 39
>KOG0031|consensus
Probab=96.32 E-value=0.0055 Score=38.35 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=27.2
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+.+..||..||.++.|.|..+.|+.+|..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHH
Confidence 466999999999999999999999999864
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.27 E-value=0.013 Score=32.80 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHh-hcCCCCC-ceeHHHHHHHHHh
Q psy4977 30 QAQIQNFKEAFNM-IDQNRDG-FIDKEDLHDMLAS 62 (63)
Q Consensus 30 ~~~~~~l~~aF~~-~D~~~~G-~I~~~el~~~l~~ 62 (63)
+.-+..+..+|.. +|.+|+| +|+.+||..++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~ 39 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNT 39 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHH
Confidence 4557789999999 7788876 9999999998863
No 41
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.23 E-value=0.0072 Score=34.00 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=25.8
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+++.+.|..+|.|++|.|+..|+..++..
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 66888999999999999999999887754
No 42
>PF14658 EF-hand_9: EF-hand domain
Probab=96.16 E-value=0.005 Score=33.26 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.4
Q ss_pred HhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 39 AFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 39 aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+|+.||.++.|.|...+|..+|+++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~ 27 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAV 27 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHH
Confidence 6999999999999999999998864
No 43
>KOG0040|consensus
Probab=96.11 E-value=0.0083 Score=48.11 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
.+++++.++.-+|++||.+.+|+++..++..||+++
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl 2282 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSL 2282 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhc
Confidence 678999999999999999999999999999999874
No 44
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.07 E-value=0.0097 Score=33.22 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+++.+.|..+|.+++|.|+.+|+..++..
T Consensus 51 ~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 51 AEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 45666788899999999999999877754
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.02 E-value=0.011 Score=34.84 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.9
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
+...|..+|.|++|.|+..|+..++
T Consensus 82 ~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 82 IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4678999999999999999999987
No 46
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.97 E-value=0.015 Score=28.08 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.7
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
.+.+..+|..+|.+++|.|+..++..++
T Consensus 35 ~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 35 EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3456779999999999999999998765
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.95 E-value=0.011 Score=33.14 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=25.0
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.++.++|..+|.|++|.|+.+|+..++..
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 55777899999999999999999887754
No 48
>PLN02964 phosphatidylserine decarboxylase
Probab=95.91 E-value=0.013 Score=43.21 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=14.2
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCce
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFI 51 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I 51 (63)
.++..|+++++++|+.||.|++|+|
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i 160 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV 160 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC
Confidence 3455555566666666666655554
No 49
>KOG0038|consensus
Probab=95.81 E-value=0.0072 Score=37.80 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=30.8
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 24 VFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 24 ~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
++++..+.++. ..-||++||-|+++.|...+|..++..|
T Consensus 99 V~sE~APrdlK-~~YAFkIYDfd~D~~i~~~DL~~~l~~l 137 (189)
T KOG0038|consen 99 VFSEMAPRDLK-AKYAFKIYDFDGDEFIGHDDLEKTLTSL 137 (189)
T ss_pred HHHhhChHHhh-hhheeEEeecCCCCcccHHHHHHHHHHH
Confidence 45555555544 6779999999999999999999988754
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.79 E-value=0.016 Score=29.43 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=24.2
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+++.+.|..+|.+++|.|+..|+..++.
T Consensus 33 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 33 SVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4577889999999999999999988775
No 51
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.78 E-value=0.016 Score=32.10 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=25.2
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+++.++|..+|.+++|.|+..++..++..
T Consensus 52 ~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 52 DAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45788899999999999999999887764
No 52
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.65 E-value=0.018 Score=31.98 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.0
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+++.++|..+|.+++|.|+..++..++..
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46788888999999999999999887753
No 53
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.27 E-value=0.04 Score=38.39 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=13.5
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
...+|..+|.|++|.|+.+|+..++
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 3455555555555555555555544
No 54
>KOG0046|consensus
Probab=95.11 E-value=0.04 Score=40.16 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=34.1
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 24 VFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 24 ~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
..+.++++++.++++.|...| +++|+|+..++..++..
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k 46 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKK 46 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHH
Confidence 356789999999999999999 99999999999988764
No 55
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.08 E-value=0.037 Score=30.14 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+++.++|..+|.+++|.|+..++..++..
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 345777888999999999999999887753
No 56
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=94.93 E-value=0.043 Score=30.58 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.9
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+++.+.+..+|.|++|.|+..++..++.
T Consensus 51 ~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 51 EVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4577788889999999999999987765
No 57
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=94.93 E-value=0.044 Score=28.19 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=24.2
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
-...+|...|.+++|.++.+|+...++.|
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 35679999999999999999999988753
No 58
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=94.70 E-value=0.054 Score=30.13 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=24.4
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+++.+.|..+|.+++|.|+.+|+..++..
T Consensus 44 ~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 44 TLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 34677888999999999999999887753
No 59
>KOG0034|consensus
Probab=94.38 E-value=0.097 Score=33.18 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=27.4
Q ss_pred HHHHHHH-HHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 30 QAQIQNF-KEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 30 ~~~~~~l-~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+++++.+ ...|..+|.+++|+|+.+|+..++.
T Consensus 142 ~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 142 DEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 5666665 6699999999999999999998875
No 60
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.05 E-value=0.092 Score=28.47 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=22.7
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+++.++|+.+ .++.++|+..||++.|.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 5688999999 77889999999998753
No 61
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=93.81 E-value=0.078 Score=30.64 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=21.6
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+.|.+++.+-|.+++|+++..|+..+|.
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4467777888899999999999887765
No 62
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=93.69 E-value=0.18 Score=29.11 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=27.4
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 26 AMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 26 ~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
..+++++...+...|...|. ++|.|+..+.+.+|
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f 35 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFF 35 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHH
Confidence 35778899999999999985 68999999988776
No 63
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=93.64 E-value=0.07 Score=37.22 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.9
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHH
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLH 57 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~ 57 (63)
...+..+|..||.+++|+|+..|+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 3457889999999999999999984
No 64
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.35 E-value=0.14 Score=29.18 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
...+.++|..+|.|++|.|+..|+..++..
T Consensus 47 ~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 47 PMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 345788899999999999999998876643
No 65
>KOG0044|consensus
Probab=93.32 E-value=0.1 Score=33.31 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.1
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
...+|+.||.+++|+|+..|+..++.
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~als 91 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFICALS 91 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHHHHH
Confidence 56789999999999999999776664
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=92.96 E-value=0.27 Score=27.11 Aligned_cols=32 Identities=9% Similarity=0.272 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHhhcCC--CCCceeHHHHHHHHH
Q psy4977 30 QAQIQNFKEAFNMIDQN--RDGFIDKEDLHDMLA 61 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~~--~~G~I~~~el~~~l~ 61 (63)
+.-+..+...|..|+.. ++|+|+..||+.+|.
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~ 37 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVE 37 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHH
Confidence 34467789999999855 479999999999985
No 67
>KOG0036|consensus
Probab=92.76 E-value=0.28 Score=34.99 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
..++.-..++..|+.||.+++|.|+..+|...+.++
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l 43 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL 43 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc
Confidence 345555678899999999999999999998777653
No 68
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=92.20 E-value=0.036 Score=32.35 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
........+..-|..+|.|++|.|+..||..+.
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~ 80 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLR 80 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGG
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHH
Confidence 334455678888999999999999998886553
No 69
>PF14658 EF-hand_9: EF-hand domain
Probab=92.01 E-value=0.43 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.348 Sum_probs=24.5
Q ss_pred HHHHHhHhhcCCCC-CceeHHHHHHHHHh
Q psy4977 35 NFKEAFNMIDQNRD-GFIDKEDLHDMLAS 62 (63)
Q Consensus 35 ~l~~aF~~~D~~~~-G~I~~~el~~~l~~ 62 (63)
+|+.....+|++|. |.|+.+++-.+|+.
T Consensus 36 ~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 36 ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 67777789999998 99999999999874
No 70
>KOG2643|consensus
Probab=92.00 E-value=0.075 Score=37.98 Aligned_cols=26 Identities=42% Similarity=0.719 Sum_probs=22.6
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
.+.=||..||.||||.|+.+|+..+.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHH
Confidence 35669999999999999999998665
No 71
>KOG0036|consensus
Probab=91.65 E-value=0.26 Score=35.08 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 30 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+...++.+.|..+|.++||.|+..|+...|+.
T Consensus 78 ~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred HHhHHHHHHHHhhhccccCCccCHHHHHHHHHH
Confidence 444566888999999999999999998887764
No 72
>KOG2643|consensus
Probab=90.31 E-value=0.11 Score=37.08 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=22.4
Q ss_pred HHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 37 KEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 37 ~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
-=+|.+||.|+||.|+..|+-.+|+
T Consensus 428 dvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 428 DVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred eeEEEEEccCCCCcccHHHHHHHHH
Confidence 3479999999999999999998886
No 73
>KOG2871|consensus
Probab=89.55 E-value=0.41 Score=33.82 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.0
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
-+.++++|+.+|+.++|+|+.+-+..+|.++
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 4568999999999999999999998888753
No 74
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=88.07 E-value=0.86 Score=26.48 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHH
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDM 59 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~ 59 (63)
++..|+..|.|++|.|+..|+..|
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHccC
Confidence 667888999999999999998764
No 75
>KOG0377|consensus
Probab=87.88 E-value=0.66 Score=33.72 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.5
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.+...|+++|.|++|.|+.+|++.+..
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWK 574 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHH
Confidence 466799999999999999999987654
No 76
>KOG1707|consensus
Probab=87.09 E-value=1.1 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=31.3
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
++++.-++-+...|..||.++||.++..|+..++..
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 466777788999999999999999999999988753
No 77
>KOG0377|consensus
Probab=84.33 E-value=1.9 Score=31.47 Aligned_cols=31 Identities=10% Similarity=0.299 Sum_probs=27.1
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
...++...|..+|.+..|+|+..++..|+..
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~ 492 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMEN 492 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHH
Confidence 3456889999999999999999999998864
No 78
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.03 E-value=2.1 Score=24.27 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=21.8
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+.++..|..+ .|++|.++...|...|+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 36789999999 688999999999988764
No 79
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=83.85 E-value=1.1 Score=18.85 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=12.5
Q ss_pred cCCCCCceeHHHHHHH
Q psy4977 44 DQNRDGFIDKEDLHDM 59 (63)
Q Consensus 44 D~~~~G~I~~~el~~~ 59 (63)
|.|++|.|+.-|+..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6789999999887654
No 80
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.62 E-value=2.3 Score=25.26 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+......||++++|.|..-.++.+|..|
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 5778899999999999999998887643
No 81
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=82.79 E-value=3.5 Score=22.02 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=21.9
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
++..+|..|-. +.+.|+.++|...|+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~ 27 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLRE 27 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHH
Confidence 47788999954 7889999999988863
No 82
>KOG2562|consensus
Probab=82.65 E-value=0.47 Score=34.14 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
-.......+.-+|+.+|.+++|.|+..||+-+..
T Consensus 345 e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 345 EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred ccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 3334445688999999999999999999987665
No 83
>KOG4251|consensus
Probab=81.69 E-value=1.6 Score=29.69 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHhhcCCCCCceeHHHHHHH
Q psy4977 30 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDM 59 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~~~~G~I~~~el~~~ 59 (63)
++-+++-+--|++.|+||+|.|+.+|+.--
T Consensus 136 qeameeSkthFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 136 QEAMEESKTHFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHhhhhhheeeeCCCCCCceehhhhhhH
Confidence 344455566789999999999999988643
No 84
>KOG0038|consensus
Probab=80.68 E-value=4.6 Score=25.43 Aligned_cols=37 Identities=8% Similarity=0.227 Sum_probs=28.4
Q ss_pred hhhCCHHHHHHH-HHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 25 FAMFDQAQIQNF-KEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 25 ~~~l~~~~~~~l-~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
-.++++++.+-+ .++...-|-+|+|.|+..|+.+++.
T Consensus 139 r~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 139 RDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 345666666544 6678888999999999999987753
No 85
>KOG2301|consensus
Probab=80.64 E-value=1.4 Score=35.83 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=34.3
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
.++++++++++++...||++..|+|...++..+++.|
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L 1446 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL 1446 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhc
Confidence 5889999999999999999999999999999998864
No 86
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.58 E-value=5.6 Score=21.44 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=30.3
Q ss_pred hhchHhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 20 ATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 20 ~~~~~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
-...+...+++..++.+...|+.| ..+.|+.+||...++.
T Consensus 14 L~~~l~~~l~~~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 14 LFSALSKHLPPSKMDLLQKHYEEF---KKKKISREEFVRKLRQ 53 (70)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHH
Confidence 334455667888888888888877 4678999999877764
No 87
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=80.35 E-value=5.3 Score=19.50 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHhhc-CCC-CCceeHHHHHHHHH
Q psy4977 31 AQIQNFKEAFNMID-QNR-DGFIDKEDLHDMLA 61 (63)
Q Consensus 31 ~~~~~l~~aF~~~D-~~~-~G~I~~~el~~~l~ 61 (63)
.-+..+..+|..|- .+| ..+++..||..+|.
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 34667889999885 444 47899999999886
No 88
>KOG0751|consensus
Probab=79.14 E-value=2.7 Score=31.10 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.3
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
...+|..||+.++|.++.+++.+++..
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhc
Confidence 567999999999999999999998764
No 89
>KOG0035|consensus
Probab=77.79 E-value=2.7 Score=32.46 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=33.9
Q ss_pred hhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 25 FAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 25 ~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
+..+++.++.+|+..|+.+|....|.++++++..+|..+
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl 776 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSL 776 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc
Confidence 445678899999999999999999999999999888653
No 90
>KOG0037|consensus
Probab=75.69 E-value=3.6 Score=26.96 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=24.8
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
....+...|...|.++.|.|+.+||..+|.
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLs 84 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALS 84 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhh
Confidence 345688889999999999999999888765
No 91
>KOG1955|consensus
Probab=75.02 E-value=3.6 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.415 Sum_probs=23.0
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.+++|..++.+-|.+.+|.++..||..+|.
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 456677777778888888888888887764
No 92
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=74.88 E-value=6.8 Score=24.09 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 30 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
..++..|.+-....|.++.||||.++|+.++
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTISELKTAV 95 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHH
Confidence 4577788888888999999999999998765
No 93
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.33 E-value=3.4 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
..|++-..-||+|++|.|.+.|--..+++|
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraL 36 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRAL 36 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHh
Confidence 456777778999999999999876666553
No 94
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.01 E-value=6.8 Score=24.83 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=31.3
Q ss_pred hhchHhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 20 ATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 20 ~~~~~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+.++++..-..-..+.+.++|..++..+.+.++..|+..+++.
T Consensus 82 SDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 82 SDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 3444444333334566889999999988899999999988864
No 95
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=73.53 E-value=9.5 Score=22.15 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=29.6
Q ss_pred cchhHHHHhhhchH-h---hhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 11 ATTKKRAQRATSNV-F---AMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 11 ~~~~~~~~~~~~~~-~---~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.|+.+..+++..++ + ..-..+-...+..-|+.+-. +|++..++++.|+-
T Consensus 3 dRt~S~A~~ALkGLrFIskt~~~~~~W~~VE~RFd~La~--dG~L~rs~Fg~CIG 55 (100)
T PF08414_consen 3 DRTKSGAQRALKGLRFISKTTGGADGWKEVEKRFDKLAK--DGLLPRSDFGECIG 55 (100)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-B--TTBEEGGGHHHHHT
T ss_pred CcchhHHHHHHhcccceecCCCCccCHHHHHHHHHHhCc--CCcccHHHHHHhcC
Confidence 45556666666655 1 11122347788899999876 88999999998863
No 96
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=71.16 E-value=14 Score=20.94 Aligned_cols=30 Identities=10% Similarity=0.480 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 31 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 31 ~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.-+..+...|..|- ...|+++..||..+|.
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~ 34 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLME 34 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHH
Confidence 44677888999997 4457899999998885
No 97
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=69.32 E-value=5.1 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=18.3
Q ss_pred HhhcCCCCCceeHHHHHHHHHh
Q psy4977 41 NMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 41 ~~~D~~~~G~I~~~el~~~l~~ 62 (63)
++||.+.+.+|+.+++..+.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3688899999999999988753
No 98
>KOG4223|consensus
Probab=68.79 E-value=9.7 Score=26.36 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 31 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 31 ~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+..+.+...|..+|.+++|.|+..+|...+.
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~ 104 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIM 104 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHH
Confidence 4556688899999999999999999886654
No 99
>KOG4347|consensus
Probab=65.81 E-value=7.4 Score=29.29 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.1
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+...|..+|.+++|-|+..++...|..
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~ 583 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSI 583 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHH
Confidence 588999999999999999999887754
No 100
>KOG4065|consensus
Probab=65.56 E-value=10 Score=22.95 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCHHHHHHH-HHHhHhhcCCCCCceeHHHHHH
Q psy4977 28 FDQAQIQNF-KEAFNMIDQNRDGFIDKEDLHD 58 (63)
Q Consensus 28 l~~~~~~~l-~~aF~~~D~~~~G~I~~~el~~ 58 (63)
.++.+++.+ -.+.+--|.|++|+|++.|+-.
T Consensus 110 ~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 110 SSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 455666655 4456677899999999998754
No 101
>KOG1707|consensus
Probab=64.45 E-value=10 Score=28.39 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=27.6
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHH
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDM 59 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~ 59 (63)
++.+.-+..+..+|.+-|.|.+|.++-.|+...
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~f 220 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDF 220 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHH
Confidence 355667788999999999999999999887643
No 102
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=64.15 E-value=4 Score=23.12 Aligned_cols=16 Identities=19% Similarity=0.619 Sum_probs=13.3
Q ss_pred cCCCCCceeHHHHHHH
Q psy4977 44 DQNRDGFIDKEDLHDM 59 (63)
Q Consensus 44 D~~~~G~I~~~el~~~ 59 (63)
|.++.|+|+.+.++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 4578899999999876
No 103
>KOG3555|consensus
Probab=64.06 E-value=5.6 Score=28.14 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
+.+.=..++...|+.+|.|.+|.++..||+.+-
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 445556778999999999999999999988764
No 104
>KOG4223|consensus
Probab=62.02 E-value=6.8 Score=27.09 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=21.8
Q ss_pred HHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 34 QNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 34 ~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
..-.+-|+.-|.|++|.++.+|+...|
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFL 189 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFL 189 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhcc
Confidence 334668999999999999999988765
No 105
>KOG4666|consensus
Probab=60.66 E-value=14 Score=26.10 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=19.9
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
..-++-+|+.|+.+.+|.++..+|..+++
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHH
Confidence 34467777777777777777777766655
No 106
>KOG4251|consensus
Probab=60.55 E-value=14 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.6
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
...+...|...|.|.+|+|+..|+...++
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwIm 128 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIM 128 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHH
Confidence 45688899999999999999999976553
No 107
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=57.50 E-value=9.9 Score=19.99 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=16.5
Q ss_pred HHhHhhcCCCCCceeHHHHHHHH
Q psy4977 38 EAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 38 ~aF~~~D~~~~G~I~~~el~~~l 60 (63)
+||.+| .+.+|.|...|+...|
T Consensus 11 kA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 11 KAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred HHHHHH-HHhCCCccHHHHHHHH
Confidence 577777 4678889998887655
No 108
>KOG0751|consensus
Probab=57.09 E-value=9.2 Score=28.40 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 29 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.+-+.+.-.++|...|..++|.|+.-++.+++.
T Consensus 174 h~~~~E~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 174 HEFQLEHAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred HHHHHHHHHHHHHHhcccCCCeeeeechHhhhh
Confidence 344666788999999999999999988888764
No 109
>KOG3866|consensus
Probab=55.84 E-value=9.9 Score=26.70 Aligned_cols=24 Identities=33% Similarity=0.729 Sum_probs=20.7
Q ss_pred HHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 38 EAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 38 ~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
..|.+.|.|++|.++-.+|..++.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHH
Confidence 367888999999999999988775
No 110
>KOG4004|consensus
Probab=55.82 E-value=7.3 Score=25.70 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred HHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 36 FKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 36 l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
+...|...|.|++|+|...|+..++
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhccc
Confidence 5778889999999999999998765
No 111
>KOG0042|consensus
Probab=55.12 E-value=12 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
++++++..++.-|..+|.+..|++...++..+|..
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~ 621 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKS 621 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999998888764
No 112
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=53.54 E-value=26 Score=17.01 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
++.+++..|.+.|.. +.+++..+...+.
T Consensus 7 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la 34 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQE-----NPYPSKEEREELA 34 (57)
T ss_dssp SSHHHHHHHHHHHHH-----SSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----hcccccccccccc
Confidence 678888888888884 4456666655443
No 113
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=50.53 E-value=29 Score=16.65 Aligned_cols=29 Identities=14% Similarity=0.466 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
++++++..|...|.. +.+.+..++..+..
T Consensus 7 ~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~ 35 (59)
T cd00086 7 FTPEQLEELEKEFEK-----NPYPSREEREELAK 35 (59)
T ss_pred CCHHHHHHHHHHHHh-----CCCCCHHHHHHHHH
Confidence 567778888888876 34666666655443
No 114
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=48.19 E-value=18 Score=21.25 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=17.6
Q ss_pred HhhcCCCCCceeHHHHHHHHH
Q psy4977 41 NMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 41 ~~~D~~~~G~I~~~el~~~l~ 61 (63)
++||.+.+-+|+.+++..+.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cccCCCccceeeHHHHHHHHH
Confidence 368888889999999988775
No 115
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=46.24 E-value=26 Score=19.01 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=23.9
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHH
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDL 56 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el 56 (63)
..+.+.++++.+-|.+||.+..|.++...+
T Consensus 57 ~~~~~~v~~II~~~~LF~~~~~~iltS~~I 86 (87)
T PF14297_consen 57 GVSEEYVEEIINEYGLFDIEEYGILTSEGI 86 (87)
T ss_pred CcCHHHHHHHHHHhCCcccCCCcEEechhh
Confidence 467888888888999999888877776543
No 116
>KOG2463|consensus
Probab=45.94 E-value=12 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.443 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 29 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
.+++.+++.+.|+-+| .+|+|+.+++......
T Consensus 164 ~~ee~~E~~d~~ed~D--dDgwitp~ni~~~~~e 195 (376)
T KOG2463|consen 164 NDEEIEELEDVEEDAD--DDGWITPSNITEAIIE 195 (376)
T ss_pred Cchhhhhhhccccccc--cccccccchHHHHHHh
Confidence 3566777777777665 4569999999876643
No 117
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=45.50 E-value=11 Score=24.25 Aligned_cols=30 Identities=30% Similarity=0.538 Sum_probs=24.6
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
..+.++++|..||.+.=-..+.+++..+|.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~ 82 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLA 82 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHh
Confidence 456799999999988877788888887764
No 118
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=45.26 E-value=31 Score=15.40 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 31 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 31 ~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
+++..+++.|. .|-|+.+|+...-.
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHHHHH
Confidence 44555665544 68899999876543
No 119
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=43.47 E-value=44 Score=20.69 Aligned_cols=32 Identities=6% Similarity=0.301 Sum_probs=25.2
Q ss_pred HHhhhchHhhhCCHHHHHHHHHHhHhhcCCCC
Q psy4977 17 AQRATSNVFAMFDQAQIQNFKEAFNMIDQNRD 48 (63)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~l~~aF~~~D~~~~ 48 (63)
.+-+-..+.+.++++++++|......+|+++.
T Consensus 13 ~DiDeDelL~~LS~EEL~~L~~el~e~DPd~~ 44 (147)
T PF03250_consen 13 EDIDEDELLAKLSPEELEELENELEEMDPDNS 44 (147)
T ss_pred ccCCHHHHHHhCCHHHHHHHHHHHHhhCCCcc
Confidence 34455667889999999999988888887653
No 120
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=39.17 E-value=39 Score=15.26 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=11.7
Q ss_pred CCCceeHHHHHHHHH
Q psy4977 47 RDGFIDKEDLHDMLA 61 (63)
Q Consensus 47 ~~G~I~~~el~~~l~ 61 (63)
+.|.|+.+++.+++.
T Consensus 1 ~~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 1 SSGTISKEEYLDMAS 15 (33)
T ss_pred CCceecHHHHHHHHH
Confidence 357899999888765
No 121
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=37.66 E-value=62 Score=16.71 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=20.0
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCc----eeHHHHHHHH
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGF----IDKEDLHDML 60 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~----I~~~el~~~l 60 (63)
.++.+|.+.|.+.|.. .|+ ++..+...+.
T Consensus 7 ~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la 39 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFC 39 (58)
T ss_pred CCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHH
Confidence 3788999999998875 455 6655554443
No 122
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=36.89 E-value=34 Score=19.98 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHhHhhcCCCCCce
Q psy4977 29 DQAQIQNFKEAFNMIDQNRDGFI 51 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~~~~G~I 51 (63)
+...++.+...|. .|.|+||.|
T Consensus 87 ~s~~~~~~E~~F~-qDlNgDG~I 108 (109)
T PF07483_consen 87 NSSALEQLETSFH-QDLNGDGTI 108 (109)
T ss_pred ChHHHHHHHHHhC-ccccCCCcC
Confidence 4556677777776 799999987
No 123
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=36.40 E-value=82 Score=23.21 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=29.6
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.+++-|--.+.-+|++-|.+|-=-|+..||+.+|.
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~ 155 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQ 155 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHH
Confidence 36777777889999999988877899999998875
No 124
>KOG4578|consensus
Probab=35.99 E-value=27 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=11.6
Q ss_pred HHhHhhcCCCCCceeHHHHHHHH
Q psy4977 38 EAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 38 ~aF~~~D~~~~G~I~~~el~~~l 60 (63)
..|+..|.|++-.|+..|+.-+|
T Consensus 374 k~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 374 KFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred hcchhcccCCCceecHHHHhhhh
Confidence 34444455555555555555444
No 125
>KOG1955|consensus
Probab=35.51 E-value=53 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=29.5
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.|+++|.+-+..-|+.+..|.+|.|+..--+.++.
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFt 258 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFT 258 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhh
Confidence 47999999999999999999999998776555543
No 126
>KOG4403|consensus
Probab=35.18 E-value=38 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=24.0
Q ss_pred HHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 33 IQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.+.++.+-+.+|.|.+|-|+.+|-..+|+
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHH
Confidence 45678888899999999999998777665
No 127
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=34.72 E-value=65 Score=17.34 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=24.5
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHH
Q psy4977 24 VFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLH 57 (63)
Q Consensus 24 ~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~ 57 (63)
....+++++...++.....-...+...|+..++.
T Consensus 8 ~Le~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le 41 (83)
T PF02758_consen 8 YLEELSEEEFKRFKWLLKEPVKEGFPPIPRGELE 41 (83)
T ss_dssp HHHTS-HHHHHHHHHHHHSTSSTTTCSSSHCHHH
T ss_pred HHHhCCHHHHHHHHHHhcchhhcCCCCCCHHHHh
Confidence 4567899999999998874556667778776654
No 128
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=34.71 E-value=49 Score=18.04 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=15.2
Q ss_pred hCCHHHHHHHHHHhHhhcC
Q psy4977 27 MFDQAQIQNFKEAFNMIDQ 45 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~ 45 (63)
-++.+++..++++|+.+=.
T Consensus 27 Gfs~~~i~~l~~ayr~l~~ 45 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFR 45 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 3789999999999997754
No 129
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=34.57 E-value=33 Score=21.78 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.6
Q ss_pred hhcCCCCCceeHHHHHHHHH
Q psy4977 42 MIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 42 ~~D~~~~G~I~~~el~~~l~ 61 (63)
-||.|++|.++.+++..+..
T Consensus 58 ~~D~~~dg~~~~~el~~l~~ 77 (212)
T PF06226_consen 58 GLDKDGDGKLDPEELAALAK 77 (212)
T ss_pred hhhhcccCCCCHHHHHHHHH
Confidence 57899999999999887654
No 130
>KOG2243|consensus
Probab=34.16 E-value=32 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=21.1
Q ss_pred HHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 38 EAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 38 ~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
..|+.||++|.|.|+..|+..+|.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame 4084 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAME 4084 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHh
Confidence 368889999999999999988775
No 131
>KOG4666|consensus
Probab=34.14 E-value=31 Score=24.39 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 31 AQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 31 ~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
..-+.+...|-+||.+++|.++..+....+
T Consensus 256 pvsd~l~~~f~LFde~~tg~~D~re~v~~l 285 (412)
T KOG4666|consen 256 PVSDKLAPTFMLFDEGTTGNGDYRETVKTL 285 (412)
T ss_pred chhhhhhhhhheecCCCCCcccHHHHhhhh
Confidence 334678999999999999999988765433
No 132
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=32.86 E-value=88 Score=17.02 Aligned_cols=35 Identities=9% Similarity=0.339 Sum_probs=26.7
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 26 AMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 26 ~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
..++.++-++|...|+..-. .+.++.+|+..+...
T Consensus 31 ~~f~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~E 65 (71)
T PF06569_consen 31 EDFSEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEE 65 (71)
T ss_pred HhCChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHH
Confidence 34778888899999998765 456899888877654
No 133
>KOG0169|consensus
Probab=32.81 E-value=67 Score=24.77 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 31 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 31 ~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+...-+...|..+|.+.+|.++..+...++..
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~ 164 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQ 164 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHH
Confidence 33445778999999999999999988877654
No 134
>PF08987 DUF1892: Protein of unknown function (DUF1892); InterPro: IPR015080 Proteins in this entry, which are synthesised by Saccharomycetes, adopt a structure consisting of a four-stranded beta-sheet, with strand order beta2-beta1-beta4-beta3, and two alpha-helices, with an overall topology of beta-beta-alpha-beta-beta-alpha. They have no known function []. ; PDB: 1N6Z_A.
Probab=32.43 E-value=32 Score=20.44 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHhHhhcC----CCCCcee
Q psy4977 29 DQAQIQNFKEAFNMIDQ----NRDGFID 52 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~----~~~G~I~ 52 (63)
....++.+..+|+.||. -+.|+|-
T Consensus 47 ~v~~~d~lN~wFDkFDEeIciPNEGhIK 74 (115)
T PF08987_consen 47 QVDEFDELNEWFDKFDEEICIPNEGHIK 74 (115)
T ss_dssp -TT-HHHHHHHHHHHHHHHHTT--S-EE
T ss_pred ccchHHHHHHHHHhhcceeecCCCCceE
Confidence 35678889999999993 3456653
No 135
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=31.26 E-value=65 Score=17.50 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhHhhcCCC
Q psy4977 30 QAQIQNFKEAFNMIDQNR 47 (63)
Q Consensus 30 ~~~~~~l~~aF~~~D~~~ 47 (63)
..+.-++-+.|++.|..|
T Consensus 10 rqevvemlqlfdlmdtkg 27 (77)
T PF13050_consen 10 RQEVVEMLQLFDLMDTKG 27 (77)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 455666778899888654
No 136
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=30.94 E-value=32 Score=17.30 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=14.3
Q ss_pred HhHhhcCCCCCceeHHHHHHH
Q psy4977 39 AFNMIDQNRDGFIDKEDLHDM 59 (63)
Q Consensus 39 aF~~~D~~~~G~I~~~el~~~ 59 (63)
.|+++...|+|.++.+|+...
T Consensus 11 I~dii~~~g~~~ls~~eia~~ 31 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAAR 31 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHT
T ss_pred cHHHHHHcCCCCCCHHHHHHH
Confidence 566666666788999888653
No 137
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=30.79 E-value=74 Score=16.38 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=14.0
Q ss_pred HHhHhhcCCCCCceeHHHH
Q psy4977 38 EAFNMIDQNRDGFIDKEDL 56 (63)
Q Consensus 38 ~aF~~~D~~~~G~I~~~el 56 (63)
-....++.+++|+|+...+
T Consensus 19 fL~~~~~~~~~g~Vpi~~i 37 (61)
T PF05383_consen 19 FLRSQMDSNPDGWVPISTI 37 (61)
T ss_dssp HHHHHHCTTTTTBEEHHHH
T ss_pred HHHHHHHhcCCCcEeHHHH
Confidence 3455777888999988755
No 138
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=29.72 E-value=58 Score=18.25 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=14.3
Q ss_pred HHHHHHHhHhhcCCCCCce
Q psy4977 33 IQNFKEAFNMIDQNRDGFI 51 (63)
Q Consensus 33 ~~~l~~aF~~~D~~~~G~I 51 (63)
-++|.+||++|-.+++..+
T Consensus 58 ~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 58 QMELEEAFRLYELNKDSEL 76 (83)
T ss_pred HHHHHHHHHHHHhcCcccE
Confidence 3568899999988876544
No 139
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=29.03 E-value=89 Score=22.78 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHhhhchHhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHH
Q psy4977 17 AQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDM 59 (63)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~ 59 (63)
+.++..++-...+++.++.+++.|..|- .|.|+.+||..-
T Consensus 111 ki~~i~~i~~d~~de~~e~lrevlh~YK---KG~idGDdLv~e 150 (536)
T COG2024 111 KIEQIEEIGIDEPDEKVERLREVLHAYK---KGEIDGDDLVHE 150 (536)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHh---cCCCCcchhHHH
Confidence 3355556666677888999999999984 577888887643
No 140
>KOG1029|consensus
Probab=27.94 E-value=54 Score=25.90 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 29 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
+....-.+++.|+.+|+...|+++..+-+.+|
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL 221 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSAL 221 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHH
Confidence 34445567788888888777777777666554
No 141
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=27.55 E-value=1.3e+02 Score=18.90 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=23.9
Q ss_pred hCCHHHHHHHHHHhH--hhcCCCCCceeHHHHHHHH
Q psy4977 27 MFDQAQIQNFKEAFN--MIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~--~~D~~~~G~I~~~el~~~l 60 (63)
.||+.|++.++.||+ .||... .++..||...|
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR--~~~l~dLA~~l 188 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPR--RVSLKDLAKEL 188 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHh
Confidence 599999999999998 566433 47777766544
No 142
>KOG0040|consensus
Probab=27.46 E-value=75 Score=27.19 Aligned_cols=27 Identities=30% Similarity=0.757 Sum_probs=23.4
Q ss_pred HHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 35 NFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 35 ~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
++.+..++.|++.+|+|+..|....|-
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 588889999999999999999877663
No 143
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=26.62 E-value=91 Score=15.21 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhHhh
Q psy4977 30 QAQIQNFKEAFNMI 43 (63)
Q Consensus 30 ~~~~~~l~~aF~~~ 43 (63)
++....|..+|+++
T Consensus 27 eEt~qkL~~AF~iL 40 (41)
T PF11590_consen 27 EETRQKLRRAFDIL 40 (41)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 55677789999875
No 144
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=1e+02 Score=17.55 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=24.1
Q ss_pred hhhCCHHHHHHHHHHhHhhcC------CCCCceeHHHHHHHHH
Q psy4977 25 FAMFDQAQIQNFKEAFNMIDQ------NRDGFIDKEDLHDMLA 61 (63)
Q Consensus 25 ~~~l~~~~~~~l~~aF~~~D~------~~~G~I~~~el~~~l~ 61 (63)
+..++++++.++...++.-|. .|.|......+..++.
T Consensus 41 ~~~lsd~el~~f~~LLe~~D~dL~~Wi~g~~~~~~~~~~~mv~ 83 (94)
T COG2938 41 FDSLSDEELDEFERLLECEDNDLFNWIMGHGEPPDAELTPMVR 83 (94)
T ss_pred HhhCCHHHHHHHHHHHcCCcHHHHHHHhCCCCCCcHHHHHHHH
Confidence 567899999998887776662 4555555555544443
No 145
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=25.86 E-value=69 Score=19.72 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=11.1
Q ss_pred hhcCCCCCceeHHHHHHHHH
Q psy4977 42 MIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 42 ~~D~~~~G~I~~~el~~~l~ 61 (63)
++|++|. +|+.++|..++.
T Consensus 53 IidKnG~-~ITs~qld~l~~ 71 (145)
T PF08339_consen 53 IIDKNGR-RITSDQLDKLLE 71 (145)
T ss_pred HhcCCCC-EEcHhHHHHHhc
Confidence 4555554 577776666553
No 146
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=25.80 E-value=28 Score=23.11 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.5
Q ss_pred HhHhhcCCCCCceeHH
Q psy4977 39 AFNMIDQNRDGFIDKE 54 (63)
Q Consensus 39 aF~~~D~~~~G~I~~~ 54 (63)
-|..||.|++|.|+..
T Consensus 91 df~~yD~dgDG~vd~~ 106 (286)
T TIGR03296 91 DFDRYDLDGDGNFDEP 106 (286)
T ss_pred ccccccccCCCccCCC
Confidence 3567899999998763
No 147
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=25.66 E-value=1.4e+02 Score=16.88 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=9.1
Q ss_pred chHhhhCCHHHHHHHHHHhH
Q psy4977 22 SNVFAMFDQAQIQNFKEAFN 41 (63)
Q Consensus 22 ~~~~~~l~~~~~~~l~~aF~ 41 (63)
..++..+++++++.+...-.
T Consensus 24 a~vlk~l~~~ei~~i~~~ma 43 (108)
T PF14842_consen 24 AEVLKHLDEEEIERISREMA 43 (108)
T ss_dssp HHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHH
Confidence 34455555555555444333
No 148
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.51 E-value=33 Score=21.68 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=21.4
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
..+.++++|.-||.+.=-..+.+++..+|.
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~ 80 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQ 80 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhc
Confidence 456788999999877655667777666553
No 149
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=25.02 E-value=78 Score=19.24 Aligned_cols=23 Identities=13% Similarity=0.421 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhHhhcCCCCCce
Q psy4977 29 DQAQIQNFKEAFNMIDQNRDGFI 51 (63)
Q Consensus 29 ~~~~~~~l~~aF~~~D~~~~G~I 51 (63)
+..+++.|.++|..++.+..|.-
T Consensus 45 T~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 45 TEGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHHHcCCCCccCc
Confidence 46788999999999998776643
No 150
>KOG0494|consensus
Probab=24.92 E-value=69 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHhHh
Q psy4977 28 FDQAQIQNFKEAFNM 42 (63)
Q Consensus 28 l~~~~~~~l~~aF~~ 42 (63)
++.-|+++|.++|..
T Consensus 148 FT~~Qle~LEkaFke 162 (332)
T KOG0494|consen 148 FTSYQLEELEKAFKE 162 (332)
T ss_pred hhHHHHHHHHHHHhh
Confidence 567778888888873
No 151
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=24.77 E-value=36 Score=21.69 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
..+.++++|.-||.+.=-..+.+++..+|.
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~ 81 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQ 81 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhc
Confidence 456788899999876655566777766653
No 152
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=24.72 E-value=1.1e+02 Score=15.61 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=29.0
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHH
Q psy4977 27 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA 61 (63)
Q Consensus 27 ~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~ 61 (63)
.++..+.+++.+-+..|..+..-.|+.+++..-++
T Consensus 27 ~~~~~~~~el~~R~~~~~~g~~~~i~~eev~~~ir 61 (63)
T TIGR02574 27 ILTEAQKAELDRRLADYKADPSKASPWEEVRARIR 61 (63)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHH
Confidence 35688889999999999888888899998877655
No 153
>PF14164 YqzH: YqzH-like protein
Probab=24.15 E-value=1.3e+02 Score=16.06 Aligned_cols=25 Identities=4% Similarity=0.072 Sum_probs=13.6
Q ss_pred HHHHhHhhcCC-CCCceeHHHHHHHH
Q psy4977 36 FKEAFNMIDQN-RDGFIDKEDLHDML 60 (63)
Q Consensus 36 l~~aF~~~D~~-~~G~I~~~el~~~l 60 (63)
++++|..|..| ..-.++..|+..+.
T Consensus 10 i~~~l~QYg~d~~~~pls~~E~~~L~ 35 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDEEWEELC 35 (64)
T ss_pred HHHHHHHhCCcccCCCCCHHHHHHHH
Confidence 46667766544 23445555555443
No 154
>PLN02230 phosphoinositide phospholipase C 4
Probab=24.11 E-value=1.3e+02 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=22.9
Q ss_pred HHHHHHHHhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 32 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 32 ~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
...++..+|..|-. ++++++.++|...|..
T Consensus 27 p~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~ 56 (598)
T PLN02230 27 PVADVRDLFEKYAD-GDAHMSPEQLQKLMAE 56 (598)
T ss_pred CcHHHHHHHHHHhC-CCCccCHHHHHHHHHH
Confidence 34668888888853 3479999999988863
No 155
>PHA02142 putative RNA ligase
Probab=22.83 E-value=28 Score=24.42 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.1
Q ss_pred HhHhhcCCCCCceeHHHHHHHHHh
Q psy4977 39 AFNMIDQNRDGFIDKEDLHDMLAS 62 (63)
Q Consensus 39 aF~~~D~~~~G~I~~~el~~~l~~ 62 (63)
+|++||.+..++++.+++..++..
T Consensus 274 vF~v~~i~~~~yl~~~e~~~~~~~ 297 (366)
T PHA02142 274 AFRAWFIDEQRFATDEEFQDLCRT 297 (366)
T ss_pred EEEEEEeccceeCCHHHHHHHHHH
Confidence 566667777789999988877654
No 156
>KOG1681|consensus
Probab=22.43 E-value=95 Score=21.08 Aligned_cols=24 Identities=25% Similarity=0.583 Sum_probs=19.7
Q ss_pred hhhCCHHHHHHHHHHhHhhcCCCC
Q psy4977 25 FAMFDQAQIQNFKEAFNMIDQNRD 48 (63)
Q Consensus 25 ~~~l~~~~~~~l~~aF~~~D~~~~ 48 (63)
++.++..-..|+.++|+.+|.|.+
T Consensus 43 ~Nal~~~~w~E~~~cf~~l~~dpd 66 (292)
T KOG1681|consen 43 LNALNKVFWREFKECFDSLDRDPD 66 (292)
T ss_pred hhhhhHHHHHHHHHHHHhhccCCC
Confidence 455777788899999999998765
No 157
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=22.25 E-value=1.3e+02 Score=15.29 Aligned_cols=31 Identities=13% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 28 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 28 l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
+++...+-|+.+|.+.. ..+.+...++...|
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L 32 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL 32 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH
Confidence 44455566788888775 56778888887765
No 158
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.25 E-value=2.2e+02 Score=18.06 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=29.3
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHHHhC
Q psy4977 24 VFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASL 63 (63)
Q Consensus 24 ~~~~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~l 63 (63)
.+..++++-.+++-++|..+-.+ ++-+...+|..++..|
T Consensus 4 ~f~ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L 42 (170)
T PF08730_consen 4 QFEKIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDL 42 (170)
T ss_pred ccccCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHc
Confidence 34567888888899999988542 5558899998887654
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=21.13 E-value=74 Score=17.10 Aligned_cols=15 Identities=20% Similarity=0.740 Sum_probs=10.7
Q ss_pred CCCceeHHHHHHHHH
Q psy4977 47 RDGFIDKEDLHDMLA 61 (63)
Q Consensus 47 ~~G~I~~~el~~~l~ 61 (63)
..|+|+..++..+|-
T Consensus 18 ~~G~lT~~eI~~~L~ 32 (82)
T PF03979_consen 18 KKGYLTYDEINDALP 32 (82)
T ss_dssp HHSS-BHHHHHHH-S
T ss_pred hcCcCCHHHHHHHcC
Confidence 468999999988764
No 160
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=20.47 E-value=2.1e+02 Score=21.30 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=28.8
Q ss_pred hhhchHhh-hCCHHHHHHHHHHhHhhcCCCCCceeHHHHHHHH
Q psy4977 19 RATSNVFA-MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 60 (63)
Q Consensus 19 ~~~~~~~~-~l~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l 60 (63)
.+.+.+.. .++.+.++.|++.|..| ..|.|+.+||..-+
T Consensus 113 ~~i~~~~~~~~~~~~~e~l~~~lh~y---kkg~~~gddl~~e~ 152 (529)
T PRK06253 113 EQIEEILGRDLSEEKIESLREVLHSY---KKGEIDGDDLVLEI 152 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHh---hcCCCccchhHHHH
Confidence 44455444 68899999999999998 45778888876433
No 161
>KOG4589|consensus
Probab=20.42 E-value=1.1e+02 Score=20.23 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=33.0
Q ss_pred ccCCCcchhHHHHhhhchHhhhCCHHHHHHHHHHhHhhcCCC
Q psy4977 6 TAGRRATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNR 47 (63)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~aF~~~D~~~ 47 (63)
++.+.+...+|.++++...|..-...+--..+.||+++..|.
T Consensus 21 sr~rs~s~~~wl~Rql~Dpy~kkAkv~NyR~RsAFKLiEind 62 (232)
T KOG4589|consen 21 SRYRSKSLHRWLTRQLKDPYVKKAKVQNYRSRSAFKLIEIND 62 (232)
T ss_pred cccccccHHHHHHHhccCHHHHHHHHhhhhhhhhhhheeehh
Confidence 345668889999999999988776666667788999887654
Done!