BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy498
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9Y9|NDK7_BOVIN Nucleoside diphosphate kinase 7 OS=Bos taurus GN=NME7 PE=2 SV=1
Length = 377
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 2 DVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLE 61
DVK ++ FL RT +++ L+DLFIGN V +FS R L ++DYGD+YT L
Sbjct: 39 DVKNHRTFLKRTKYEDLHLEDLFIGNKVNIFS----------RQLVLLDYGDQYTARQLG 88
Query: 62 STNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIK---RIMSQQEYTAR 118
S + T+A ++P A E+ + + GF L M+ + + I Q
Sbjct: 89 SKKEK-TLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLN 147
Query: 119 IPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASN 174
I + +GP+I ++ +AV + + ++GPA+ A ++ P S+RA + G N
Sbjct: 148 ELIQFITSGPIIAMEILRDDAVCEWKRLLGPANSGLARTDAPESIRALFGTDGIKN 203
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 68 TIAFLRPHANDSK--SELFQDLINHGFEFINLLMV--------EFNEEIKRIMSQQEYTA 117
T ++PHA ++ + + GFE + M EF E K ++S EY
Sbjct: 241 TCCIVKPHAVSEGLLGKILMTIRDAGFEISAMQMFNMDRINVEEFYEVYKGVVS--EYNE 298
Query: 118 RIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYV 177
+ + M +GP + +++ N ++ GPAD E A P +LRA + N
Sbjct: 299 MV--TEMYSGPCVAMEIQQTNPTMTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVH 356
Query: 178 ATE 180
T+
Sbjct: 357 CTD 359
>sp|Q9QXL8|NDK7_MOUSE Nucleoside diphosphate kinase 7 OS=Mus musculus GN=Nme7 PE=2 SV=1
Length = 395
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 2 DVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLE 61
DVK + FL RT +++ L+DLFIGN V +FS R L ++DYGD+YT L
Sbjct: 58 DVKNRRTFLKRTKYEDLRLEDLFIGNKVNVFS----------RQLVLIDYGDQYTARQLG 107
Query: 62 STNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARI-- 119
S + T+A ++P A E+ + + GF L M+ + ++
Sbjct: 108 SRKEK-TLALIKPDAVSKAGEIIEMINKSGFTITKLRMMTLTRKEAADFHVDHHSRPFYN 166
Query: 120 -PISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASN 174
I + +GPVI ++ +A+ + + ++GPA+ + ++ P S+RA + G N
Sbjct: 167 ELIQFITSGPVIAMEILRDDAICEWKRLLGPANSGLSRTDAPGSIRALFGTDGVRN 222
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 67 CTIAFLRPHANDSKSELFQDLIN-----HGFEFINLLMV------EFNEEIKRIMSQQEY 115
CT ++PHA S+ L ++LI G I + + EF E K ++S EY
Sbjct: 258 CTCCIIKPHA-ISEGMLGKNLIAIRDACFGMSAIQMFNLDRANVEEFYEVYKGVVS--EY 314
Query: 116 TARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNL 175
+ + + +GP + +++ N + ++ GPAD E A P +LRA + N
Sbjct: 315 NDMV--TELCSGPCVAIEIQQSNPTKTFREFCGPADPEIARHLRPETLRAIFGKTKVQNA 372
Query: 176 YVATE 180
T+
Sbjct: 373 VHCTD 377
>sp|Q9QXL7|NDK7_RAT Nucleoside diphosphate kinase 7 OS=Rattus norvegicus GN=Nme7 PE=1
SV=1
Length = 395
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 2 DVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLE 61
DVK + FL RT +++ ++DLFIGN V +FS R L ++DYGD+YT L
Sbjct: 58 DVKNRRTFLKRTKYEDLRVEDLFIGNKVNVFS----------RQLVLIDYGDQYTARQLG 107
Query: 62 STNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARI-- 119
S + T+A ++P A E+ + + GF L M+ + + ++
Sbjct: 108 SRKEK-TLALIKPDAVSKAGEIIEMINKSGFTITKLRMMTLSRKEAADFHVDHHSRPFYN 166
Query: 120 -PISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASN 174
I + +GPVI ++ +A+ + + ++GPA+ A S P S+RA + G N
Sbjct: 167 ELIQFITSGPVIAMEILRDDAICEWKRLLGPANSGIARSEAPGSVRALFGTDGIRN 222
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 67 CTIAFLRPHANDSKSELFQDLI---NHGFEFINLLMV--------EFNEEIKRIMSQQEY 115
CT ++PHA S+ L + LI + FE + M EF E K ++S +Y
Sbjct: 258 CTCCIIKPHA-ISEGMLGKILIAIRDACFEISAIQMFNMDRANVEEFYEVYKGVLS--DY 314
Query: 116 TARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNL 175
+ + + +GP + +++ N + ++ GP+D E A P +LRA + N
Sbjct: 315 NDMV--TELYSGPCVAIEIQQSNPTKTFREFCGPSDPEIARHLRPETLRANFGKTKVQNA 372
Query: 176 YVATE 180
T+
Sbjct: 373 VHCTD 377
>sp|Q9Y5B8|NDK7_HUMAN Nucleoside diphosphate kinase 7 OS=Homo sapiens GN=NME7 PE=1 SV=1
Length = 376
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 2 DVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLE 61
DVK ++ FL RT D + L+DLFIGN V +FS R L ++DYGD+YT L
Sbjct: 39 DVKNHRTFLKRTKYDNLHLEDLFIGNKVNVFS----------RQLVLIDYGDQYTARQLG 88
Query: 62 STNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPI 121
S + T+A ++P A E+ + + GF L M+ + + + + ++ +R
Sbjct: 89 SRKEK-TLALIKPDAISKAGEIIEIINKAGFTITKLKMMMLSRK-EALDFHVDHQSRPFF 146
Query: 122 SSML----NGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASN 174
+ ++ GP+I ++ +A+ + + ++GPA+ A ++ S+RA + G N
Sbjct: 147 NELIQFITTGPIIAMEILRDDAICEWKRLLGPANSGVARTDASESIRALFGTDGIRN 203
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 67 CTIAFLRPHANDSK--SELFQDLINHGFEFINLLMV--------EFNEEIKRIMSQQEYT 116
CT ++PHA ++ + + GFE + M EF E K ++++
Sbjct: 239 CTCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDM 298
Query: 117 ARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLY 176
++ M +GP + +++ NA + ++ GPAD E A P +LRA + N
Sbjct: 299 ----VTEMYSGPCVAMEIQQNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAV 354
Query: 177 VATE 180
T+
Sbjct: 355 HCTD 358
>sp|Q95YJ5|TXND3_CIOIN Thioredoxin domain-containing protein 3 homolog OS=Ciona
intestinalis GN=CiIC3 PE=2 SV=1
Length = 653
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 68 TIAFLRPHANDSKSELFQDLINHGFEFINL-----LMVEFNEEIKRIMSQQEYTARIPIS 122
T+A ++P A D K ++ L GF I+ L E EI + EY + I
Sbjct: 462 TLAVIKPDAIDEKEQIMGKLKEAGF-MISCQKDMNLSKEIASEIYKSKEGSEYYDHL-ID 519
Query: 123 SMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP ++ L NAV+KL+D++GP D E A ++P SLRA ++
Sbjct: 520 HMTSGPTLMMVLSAENAVEKLRDIMGPTDPEVAKESHPESLRAMFA 565
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 66 QCTIAFLRPHA--NDSKSELFQDLINHGFEFI----NLLMVEFNEEIKRIMSQQEYTARI 119
Q T+A ++P N E+ Q + G E + +L VE + + ++EY ++
Sbjct: 156 QITVALIKPDVVQNGQVDEILQKISEAGIEVLADEERMLTVEEARDFYKNKEEEEYFDQL 215
Query: 120 PISSMLNGPVIVFQL----RGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNL 175
I + +GP V L G V +D++GP D A P SLRA Y SN
Sbjct: 216 -IDYVTSGPCRVLVLTKGESGEGVVTLWRDIIGPFDAAVAKEENPDSLRAIYGTDATSNA 274
Query: 176 Y---VATEETVQE 185
+TEE V+E
Sbjct: 275 LHGSSSTEEAVRE 287
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 54 RYTKSYLESTNYQCTIAFLRPHANDS-KSELFQDLINHGFEF-INLLMVEFNEEIKRIMS 111
R +K+ + Q T+A +RP A + K + Q + GF+ + MV E+ + S
Sbjct: 313 RRSKTPSQKPRLQRTLAIIRPDALQAHKDSILQKIDEAGFKIAMQKEMVLTREQAESFYS 372
Query: 112 QQEYTARIP--ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARY 167
+ + T + M GPV+ L +AV + ++GP +A+ P SLRA++
Sbjct: 373 EHKDTDYFEPLVKQMTCGPVLALCLAHDDAVDHWRSMLGPKVVADAVEEQPDSLRAQF 430
>sp|P90666|TXND3_HELCR Thioredoxin domain-containing protein 3 homolog OS=Heliocidaris
crassispina GN=NME8 PE=1 SV=1
Length = 837
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 68 TIAFLRPHA-NDSKSELFQDLINHGFEFINLLMVEFNE-EIKRIMSQQEYTARIP--ISS 123
T+A +RP A D K E+ Q + GFE MV+ E + K +QE T I
Sbjct: 358 TLALIRPSALKDHKDEMLQKIQEAGFEVCLQKMVQLTEDQAKEFYKEQEGTPHFEDLIRE 417
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +G V+ L +A+Q ++ +GP +EA P SLRA+YS
Sbjct: 418 MTSGEVLALGLAKESAIQSWREFIGPTTIDEAKEKAPDSLRAQYS 462
Score = 37.4 bits (85), Expect = 0.054, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 61 ESTNYQCTIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQ---EY 115
E + T+ ++P A N + + HGFE + E+ R +Q E
Sbjct: 197 EPVPKEVTVVLIKPDAVANGHVDSIIAKIEEHGFEILTTEDKTLTEDEAREFYKQHEEEE 256
Query: 116 TARIPISSMLNGPVIVFQLR----GVNAVQKLQDVVGPADREEALSNYPHSLRARY 167
+ ++ M +GP + L G V ++++++GP D E A P SLRA++
Sbjct: 257 HFEVLVTFMASGPSKILVLTRGDTGEGVVSEVRNLLGPKDIEVAKEEAPDSLRAQF 312
Score = 35.4 bits (80), Expect = 0.24, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 66 QCTIAFLRPHA-NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIM----SQQEYTARIP 120
Q T+A ++P A + K + + + GF VE N+E+ + +E+ +
Sbjct: 491 QTTLAVIKPDAAGEHKEAIIEKIKEAGFNISLQRDVELNKELASKLYLEHEGKEFYENL- 549
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRA 165
I M +G +V L +AV + ++GP D + A + P SLRA
Sbjct: 550 IDHMSSGLSMVMVLSREDAVDGWRTLMGPTDPDYAREHAPESLRA 594
>sp|O67528|NDK_AQUAE Nucleoside diphosphate kinase OS=Aquifex aeolicus (strain VF5)
GN=ndk PE=1 SV=1
Length = 142
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 68 TIAFLRPHANDSKS--ELFQDLINHGFEFINLLMVEFNEE----IKRIMSQQEYTARIPI 121
T+ ++P A + + ++ I GF+ L M F E + ++ + + +
Sbjct: 6 TLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL-V 64
Query: 122 SSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GPV+ L G +A++++++++GP D EEA P+S+RA++
Sbjct: 65 EFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFG 111
>sp|Q715T0|TXND3_MOUSE Thioredoxin domain-containing protein 3 OS=Mus musculus GN=Nme8
PE=2 SV=1
Length = 586
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 60 LESTNYQCTIAFLRPH-ANDSKSELFQDLINHGFEFINLLMVEFNEE----IKRIMSQQE 114
++STN Q T+A L P + K ++ + N GF + + +EE + +I +E
Sbjct: 307 MKSTNVQTTLALLHPDICEEEKDDVLNVIHNEGFTILMQRQIVLSEEEARTVCKIHENEE 366
Query: 115 YTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
Y + I M + V LR N V+ + ++GP EEA +++P SL +++
Sbjct: 367 YFDNL-IGHMTSNHSYVLALRRENGVEYWKTLIGPKTIEEAYASHPQSLCVQFA 419
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Query: 66 QCTIAFLRPH-ANDSKSELFQDLINHGFEFINLLMVEF-------NEEIKRIMSQQEYTA 117
Q T+A ++PH + + E+ + + GFE LM E N+ +I + Y
Sbjct: 448 QSTLALIKPHVTHKERMEILKTIKEAGFELT--LMKEMHLTPEHANKIYFKITGKDFYKN 505
Query: 118 RIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS--------H 169
+ + S+ G +V L NAV + + +VGP D EEA P SLRA+Y H
Sbjct: 506 VLEVLSL--GMSLVMVLTKWNAVAEWRRMVGPVDPEEAKLLSPESLRAKYGLDILRNAVH 563
Query: 170 LGASNLYVATE 180
GASN A+E
Sbjct: 564 -GASNFSEASE 573
>sp|Q8N427|TXND3_HUMAN Thioredoxin domain-containing protein 3 OS=Homo sapiens GN=NME8
PE=1 SV=2
Length = 588
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 66 QCTIAFLRPHANDSKSELFQDLINH-GFEFINLL-MVEFNEEIKRIMSQQEYTARIPISS 123
Q T+ ++PHA + E ++ GF+ + M E+I++I + T +
Sbjct: 451 QSTLGLIKPHATSEQREQILKIVKEAGFDLTQVKKMFLTPEQIEKIYPK--VTGKDFYKD 508
Query: 124 MLN----GPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARY--SHL-----GA 172
+L GP +V L NAV + + ++GP D EEA P S+RA++ S L GA
Sbjct: 509 LLEMLSVGPSMVMILTKWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFGISKLKNIVHGA 568
Query: 173 SNLYVATE 180
SN Y A E
Sbjct: 569 SNAYEAKE 576
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 76/151 (50%), Gaps = 10/151 (6%)
Query: 35 ILKIVDYGDRILKIVDYGDRYTKSY--LESTNYQCTIAFLRPHA-NDSKSELFQDLINHG 91
+ ++ D + + + D + + ++S + T+A LRP+ ++ K ++ + + +
Sbjct: 283 LAQLCDIEEDAANVAKFMDAFFPDFKKMKSMKLEKTLALLRPNLFHERKDDVLRIIKDED 342
Query: 92 FEFINLLMVEFNEEIKRIMSQQ----EYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVV 147
F+ + V +E+ + + ++ +Y ++ I +M +GP + L N +Q + ++
Sbjct: 343 FKILEQRQVVLSEKEAQALCKEYENEDYFNKL-IENMTSGPSLALVLLRDNGLQYWKQLL 401
Query: 148 GPADREEALSNYPHSLRARYS--HLGASNLY 176
GP EEA+ +P SL A+++ L + LY
Sbjct: 402 GPRTVEEAIEYFPESLCAQFAMDSLPVNQLY 432
>sp|Q715S9|TXND3_RAT Thioredoxin domain-containing protein 3 OS=Rattus norvegicus
GN=Nme8 PE=2 SV=2
Length = 587
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 66 QCTIAFLRPH-ANDSKSELFQDLINHGFEFINL----LMVEFNEEIKRIMSQQEYTARIP 120
Q T+A ++PH ++ + E+ + + + FE + L E ++ ++ +++ +
Sbjct: 449 QSTLALIKPHVSHKERMEILKAIRDARFELTQMKEMHLTPEHASKVYFKITGKDFYKNV- 507
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS--------HLGA 172
+ + +G +V L NAV + + ++GP D EEA P+SLRARY H GA
Sbjct: 508 LDVLSSGMSVVMILTKWNAVGEWRRMMGPVDPEEAKLLSPNSLRARYGIDVLRNAVH-GA 566
Query: 173 SNLYVAT 179
SN+ A
Sbjct: 567 SNMSEAA 573
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 60 LESTNYQCTIAFLRPHANDSKSELFQDLI-NHGFEFINLLMVEFNEEIKR----IMSQQE 114
++STN Q T+ L P + + + D+I N GF + V +EE R + ++
Sbjct: 308 MKSTNVQRTLGLLYPEVCEEEKDNVLDIIQNEGFTILMQRQVVLSEEEARAVCHVHEDED 367
Query: 115 YTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
Y + I M + + L ++V++ ++++GP EEA +++P SL R++
Sbjct: 368 YFDNL-IGYMCSNNSYILVLMREHSVERWKELIGPKTVEEAYASHPDSLCVRFA 420
>sp|Q1LU78|NDK_BAUCH Nucleoside diphosphate kinase OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=ndk PE=3 SV=1
Length = 144
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNE-EIKRIMSQQEYTARIP--IS 122
T++ ++P+A N++ + I+ F I + M+ + + K ++ ++ + I+
Sbjct: 6 TLSIIKPNAIKNNALGTIIHRFISANFNIIGMKMLHLTKAQAKGFYTEHQHKSFFNDLIN 65
Query: 123 SMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M++GP++V L +A+++ +D++G + +A++ +LRA Y+
Sbjct: 66 FMISGPIVVLVLESPDAIRRNRDIIGATNPVDAIAG---TLRADYA 108
>sp|B1JS01|NDK_YERPY Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=ndk PE=3 SV=1
Length = 142
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N++ ++ + GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP+IV L G NAVQ+ +D++G + + AL+ +LRA ++
Sbjct: 64 VEFMTSGPIIVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFA 108
>sp|Q667Z5|NDK_YERPS Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=ndk PE=3 SV=1
Length = 142
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N++ ++ + GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP+IV L G NAVQ+ +D++G + + AL+ +LRA ++
Sbjct: 64 VEFMTSGPIIVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFA 108
>sp|Q6D272|NDK_ERWCT Nucleoside diphosphate kinase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=ndk
PE=3 SV=1
Length = 142
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M++GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MMSGPIMVQALEGENAVQRNRDIMGATNPANALAG---TLRADYA 108
>sp|A9HJV3|NDK_GLUDA Nucleoside diphosphate kinase OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=ndk PE=3 SV=1
Length = 140
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+S M++GPV++ L G NAV K +DV+G D ++A P ++RA+++
Sbjct: 64 VSFMVSGPVVLQVLEGENAVLKHRDVMGATDPKKA---APGTVRAQFA 108
>sp|Q99MH5|NDK5_MOUSE Nucleoside diphosphate kinase homolog 5 OS=Mus musculus GN=Nme5
PE=2 SV=2
Length = 211
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 68 TIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEE-IKRIMSQQEYTARIP--ISSM 124
T+A ++P D + E+ ++ GF I + + E +Q P + M
Sbjct: 15 TLALIKPDVVDKEEEIQDIILGSGFTIIQRRKLHLSPEHCSNFYVEQYGKMFFPNLTAYM 74
Query: 125 LNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS------HLGASNLYVA 178
+GP++ L A+ ++++GP++ A +P SLRA Y L SN + A
Sbjct: 75 SSGPLVAMILARHKAISYWKELMGPSNSLVAKETHPDSLRAIYGTDELRNALHGSNDFAA 134
Query: 179 TEETVQ 184
+E ++
Sbjct: 135 SEREIR 140
>sp|A6Q200|NDK_NITSB Nucleoside diphosphate kinase OS=Nitratiruptor sp. (strain SB155-2)
GN=ndk PE=3 SV=1
Length = 137
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSH 169
M +GPV+V L G NAV K ++++G D +EA P ++RA ++
Sbjct: 65 MTSGPVVVMVLEGENAVAKNRELMGATDPKEA---KPGTIRADFAE 107
>sp|A6TCD7|NDK_KLEP7 Nucleoside diphosphate kinase OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=ndk PE=3
SV=1
Length = 143
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A + +F GF+ + M+ E R E+ R P
Sbjct: 6 TFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGF-YAEHEGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 64 VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B5XNL1|NDK_KLEP3 Nucleoside diphosphate kinase OS=Klebsiella pneumoniae (strain 342)
GN=ndk PE=3 SV=1
Length = 143
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A + +F GF+ + M+ E R E+ R P
Sbjct: 6 TFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGF-YAEHEGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 64 VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|C6DBH8|NDK_PECCP Nucleoside diphosphate kinase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=ndk PE=3 SV=1
Length = 142
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M++GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MMSGPIMVQVLEGENAVQRNRDIMGATNPANALAG---TLRADYA 108
>sp|A4TMU1|NDK_YERPP Nucleoside diphosphate kinase OS=Yersinia pestis (strain Pestoides
F) GN=ndk PE=3 SV=1
Length = 142
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N+ ++ GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + + AL+ +LRA +S
Sbjct: 64 VEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFS 108
>sp|Q1CK95|NDK_YERPN Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=ndk PE=3 SV=1
Length = 142
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N+ ++ GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + + AL+ +LRA +S
Sbjct: 64 VEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFS 108
>sp|A9R806|NDK_YERPG Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua
(strain Angola) GN=ndk PE=3 SV=1
Length = 142
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N+ ++ GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + + AL+ +LRA +S
Sbjct: 64 VEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFS 108
>sp|Q8ZCT2|NDK_YERPE Nucleoside diphosphate kinase OS=Yersinia pestis GN=ndk PE=3 SV=1
Length = 142
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N+ ++ GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + + AL+ +LRA +S
Sbjct: 64 VEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFS 108
>sp|Q1C5I4|NDK_YERPA Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua
(strain Antiqua) GN=ndk PE=3 SV=1
Length = 142
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N+ ++ GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + + AL+ +LRA +S
Sbjct: 64 VEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFS 108
>sp|Q7N710|NDK_PHOLL Nucleoside diphosphate kinase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=ndk PE=3 SV=1
Length = 141
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVQVLEGENAVQRHRDLMGATNPDNALAG---TLRADYA 108
>sp|Q5L6Z2|NDK_CHLAB Nucleoside diphosphate kinase OS=Chlamydophila abortus (strain
S26/3) GN=ndk PE=3 SV=1
Length = 141
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M++GPV+V L G NAV + ++++G + +EA P ++RA++
Sbjct: 65 MISGPVVVMVLEGNNAVARNREIMGATNPQEAA---PGTIRAQFG 106
>sp|Q1GSA0|NDK_SPHAL Nucleoside diphosphate kinase OS=Sphingopyxis alaskensis (strain
DSM 13593 / LMG 18877 / RB2256) GN=ndk PE=3 SV=1
Length = 140
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVG---PADREEAL--SNYPHSLRARYSHLGASNLYVA 178
M++GPV+V L G +AV++ +DV+G PAD E + S+ A H S+ A
Sbjct: 67 MISGPVVVQVLEGEDAVKRNRDVMGATNPADAAEGTIRKTFAESIEANSVHGSDSDENAA 126
Query: 179 TE 180
TE
Sbjct: 127 TE 128
>sp|B2K9Q4|NDK_YERPB Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=ndk PE=3 SV=1
Length = 142
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 68 TIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP----- 120
T + ++P+A N++ ++ + GF+ I M+ +E E+ R P
Sbjct: 6 TFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGF-YAEHKGR-PFFDGL 63
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
+ M +GP++V L G NAVQ+ +D++G + + AL+ +LRA ++
Sbjct: 64 VEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAG---TLRADFA 108
>sp|B2VE97|NDK_ERWT9 Nucleoside diphosphate kinase OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=ndk PE=3 SV=1
Length = 143
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GPV+V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPVVVSVLEGDNAVQRHRDLMGATNPANALAG---TLRADYA 108
>sp|B5FAW8|NDK_VIBFM Nucleoside diphosphate kinase OS=Vibrio fischeri (strain MJ11)
GN=ndk PE=3 SV=1
Length = 144
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
++ M++GPV+V L G NAV + ++++G + EEA SLRA Y+
Sbjct: 64 VAYMMSGPVMVQVLEGENAVVRYRELMGKTNPEEAACG---SLRADYA 108
>sp|Q5E776|NDK_VIBF1 Nucleoside diphosphate kinase OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=ndk PE=3 SV=1
Length = 144
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
++ M++GPV+V L G NAV + ++++G + EEA SLRA Y+
Sbjct: 64 VAYMMSGPVMVQVLEGENAVVRYRELMGKTNPEEAACG---SLRADYA 108
>sp|B7MYF2|NDK_ECO81 Nucleoside diphosphate kinase OS=Escherichia coli O81 (strain ED1a)
GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B7UGW4|NDK_ECO27 Nucleoside diphosphate kinase OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|Q7VIC9|NDK_HELHP Nucleoside diphosphate kinase OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=ndk PE=3 SV=1
Length = 137
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEA-----LSNYPHSLRARYSHLGASNLYVA 178
M++GPV+V L G NAV K +D++G + +EA +++ S+ A H G+ +L A
Sbjct: 65 MISGPVVVMVLEGNNAVMKNRDLMGATNPKEAEAGTIRADFAQSIDANAVH-GSDSLENA 123
Query: 179 TEE 181
E
Sbjct: 124 KNE 126
>sp|Q1R8L4|NDK_ECOUT Nucleoside diphosphate kinase OS=Escherichia coli (strain UTI89 /
UPEC) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B1LNH3|NDK_ECOSM Nucleoside diphosphate kinase OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|Q8FF53|NDK_ECOL6 Nucleoside diphosphate kinase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ndk PE=3 SV=3
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|Q0TEW7|NDK_ECOL5 Nucleoside diphosphate kinase OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|A1AE56|NDK_ECOK1 Nucleoside diphosphate kinase OS=Escherichia coli O1:K1 / APEC
GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B7NRG8|NDK_ECO7I Nucleoside diphosphate kinase OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B7MI03|NDK_ECO45 Nucleoside diphosphate kinase OS=Escherichia coli O45:K1 (strain
S88 / ExPEC) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|Q3YZ34|NDK_SHISS Nucleoside diphosphate kinase OS=Shigella sonnei (strain Ss046)
GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|P0A765|NDK_SHIFL Nucleoside diphosphate kinase OS=Shigella flexneri GN=ndk PE=3 SV=2
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|Q0T201|NDK_SHIF8 Nucleoside diphosphate kinase OS=Shigella flexneri serotype 5b
(strain 8401) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|Q32D44|NDK_SHIDS Nucleoside diphosphate kinase OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|Q31XX2|NDK_SHIBS Nucleoside diphosphate kinase OS=Shigella boydii serotype 4 (strain
Sb227) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B2TXU3|NDK_SHIB3 Nucleoside diphosphate kinase OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B7LKC0|NDK_ESCF3 Nucleoside diphosphate kinase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
>sp|B6I590|NDK_ECOSE Nucleoside diphosphate kinase OS=Escherichia coli (strain SE11)
GN=ndk PE=3 SV=1
Length = 143
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
M +GP++V L G NAVQ+ +D++G + AL+ +LRA Y+
Sbjct: 67 MTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYA 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,085,169
Number of Sequences: 539616
Number of extensions: 2599743
Number of successful extensions: 6856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 6615
Number of HSP's gapped (non-prelim): 297
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)