Query psy498
Match_columns 189
No_of_seqs 179 out of 1078
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:43:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04415 NDPk7A Nucleoside diph 100.0 4.3E-43 9.3E-48 271.4 9.2 119 66-186 1-124 (131)
2 cd04418 NDPk5 Nucleoside dipho 100.0 3.8E-42 8.3E-47 266.4 8.8 119 66-186 1-124 (132)
3 PRK14542 nucleoside diphosphat 100.0 1.3E-41 2.9E-46 264.9 9.0 117 65-186 1-124 (137)
4 cd04414 NDPk6 Nucleoside dipho 100.0 3.7E-41 8.1E-46 261.7 9.2 119 66-186 1-127 (135)
5 cd04412 NDPk7B Nucleoside diph 100.0 4.3E-41 9.3E-46 261.0 9.3 119 66-186 1-127 (134)
6 PLN02931 nucleoside diphosphat 100.0 5.3E-41 1.2E-45 271.1 9.0 120 65-186 29-155 (177)
7 PRK14541 nucleoside diphosphat 100.0 6.2E-41 1.3E-45 262.0 9.0 117 65-186 1-124 (140)
8 PTZ00093 nucleoside diphosphat 100.0 8.7E-41 1.9E-45 263.7 9.3 117 65-186 2-125 (149)
9 cd04416 NDPk_TX NDP kinase dom 100.0 9.6E-41 2.1E-45 258.3 8.5 119 66-186 1-125 (132)
10 cd00595 NDPk Nucleoside diphos 100.0 1.3E-40 2.9E-45 257.6 9.0 119 66-186 1-126 (133)
11 PRK14545 nucleoside diphosphat 100.0 1.4E-40 3.1E-45 259.7 8.8 117 65-186 3-126 (139)
12 PRK14540 nucleoside diphosphat 100.0 2.1E-40 4.6E-45 257.2 9.3 117 65-186 2-125 (134)
13 COG0105 Ndk Nucleoside diphosp 100.0 4.5E-40 9.8E-45 251.4 9.3 117 65-186 2-125 (135)
14 cd04413 NDPk_I Nucleoside diph 100.0 9.9E-40 2.1E-44 252.1 8.4 116 66-186 1-123 (130)
15 PRK00668 ndk mulitfunctional n 100.0 1.2E-39 2.6E-44 252.8 8.5 117 65-186 1-124 (134)
16 PRK14543 nucleoside diphosphat 100.0 5.6E-39 1.2E-43 257.6 8.9 117 65-186 5-143 (169)
17 PLN02619 nucleoside-diphosphat 100.0 1.2E-38 2.7E-43 266.1 7.9 117 65-186 88-211 (238)
18 PF00334 NDK: Nucleoside dipho 100.0 2.7E-38 5.8E-43 244.8 7.0 116 66-186 1-123 (135)
19 smart00562 NDK These are enzym 100.0 1.2E-37 2.6E-42 241.3 9.1 116 66-186 1-123 (135)
20 PRK14544 nucleoside diphosphat 100.0 2E-36 4.3E-41 245.4 9.0 117 65-186 3-169 (183)
21 KOG0888|consensus 100.0 1.4E-36 2.9E-41 240.0 3.4 120 65-186 5-131 (156)
22 smart00676 DM10 Domains in hyp 99.1 2.1E-11 4.6E-16 90.9 3.1 50 2-62 41-102 (104)
23 KOG0043|consensus 58.9 7.2 0.00016 35.7 2.3 36 17-63 141-176 (452)
24 COG1799 Uncharacterized protei 36.0 70 0.0015 25.9 4.4 42 65-108 72-114 (167)
25 KOG2738|consensus 27.9 6.1 0.00013 35.1 -3.1 32 65-96 242-275 (369)
26 PF04472 DUF552: Protein of un 27.7 72 0.0016 21.6 2.8 38 69-108 1-39 (73)
27 PF14502 HTH_41: Helix-turn-he 27.5 13 0.00028 23.9 -0.9 18 41-58 2-19 (48)
28 COG1724 Predicted RNA binding 23.5 95 0.0021 21.3 2.7 20 80-99 9-28 (66)
29 CHL00123 rps6 ribosomal protei 21.0 2.4E+02 0.0051 20.3 4.6 71 66-148 8-84 (97)
30 cd04905 ACT_CM-PDT C-terminal 20.5 2.3E+02 0.0049 19.0 4.3 33 68-100 3-35 (80)
31 cd04903 ACT_LSD C-terminal ACT 20.4 2E+02 0.0044 17.7 3.8 32 68-99 1-32 (71)
No 1
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=4.3e-43 Score=271.42 Aligned_cols=119 Identities=22% Similarity=0.405 Sum_probs=116.1
Q ss_pred eEEEEEEeCccccchHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecchH
Q psy498 66 QCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVNAV 140 (189)
Q Consensus 66 e~Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~naV 140 (189)
|+||+|||||+++++|+||++|+++||.|+++||++||++ |++ |.+++|| ++|+++|+|||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~--~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFY--NELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCch--HHHHHHHhcCCeEEEEEECCcHH
Confidence 6999999999999999999999999999999999999999 988 8899999 99999999999999999999999
Q ss_pred HHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 141 QKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 141 ~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
++||+++||+||..|+...|+|||++||.+.++|++||||++++|+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~ 124 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAA 124 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHH
Confidence 9999999999999999999999999999999999999999999885
No 2
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=3.8e-42 Score=266.35 Aligned_cols=119 Identities=20% Similarity=0.348 Sum_probs=116.0
Q ss_pred eEEEEEEeCccccchHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecchH
Q psy498 66 QCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVNAV 140 (189)
Q Consensus 66 e~Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~naV 140 (189)
|+||+|||||+++++|+||++|+++||.|+++||++||++ |++ |.+++|| +.|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPda~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~--~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFF--PHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccH--HHHHHHHhcCCeEEEEEecCCHH
Confidence 6999999999999999999999999999999999999999 888 8899999 99999999999999999999999
Q ss_pred HHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 141 QKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 141 ~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
++||+++||+||+.|+...|+|||++||.+.++|++||||++++|+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~ 124 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAE 124 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHH
Confidence 9999999999999999999999999999999999999999999885
No 3
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.3e-41 Score=264.89 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=112.0
Q ss_pred ceEEEEEEeCcccc--chHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHAND--SKSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~--~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++. ++|+||++|+++||.|+++||++||++ |++ |.+++|| ++|+++|+|||+++|+|.|+
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~--~~Lv~~m~sGp~va~~l~g~ 78 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFY--NDLCNYMSSGPIVAAALERD 78 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccH--HHHHHHHhcCCeEEEEEeCC
Confidence 48999999999995 489999999999999999999999999 888 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||+++||+||+.| .|+|||++||.+.++|++||||++++|+
T Consensus 79 nav~~~R~l~Gpt~p~~A---~p~siR~~fg~~~~~N~vH~Sds~e~A~ 124 (137)
T PRK14542 79 NAVLHWREVIGATDPKEA---AAGTIRALYAESKEANAVHGSDSDANAA 124 (137)
T ss_pred CHHHHHHHHhCCCCchhC---CCCCchHHhcCcccceeEECCCCHHHHH
Confidence 999999999999999999 5999999999999999999999999884
No 4
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=3.7e-41 Score=261.73 Aligned_cols=119 Identities=22% Similarity=0.331 Sum_probs=114.5
Q ss_pred eEEEEEEeCccccc---hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 66 QCTIAFLRPHANDS---KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 66 e~Tl~lIKPda~~~---~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
|+||+|||||++++ .|.|++.|+++||.|+++||++||++ |++ |.+++|| ++|+++|+|||+++|+|.|+
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~--~~Lv~~m~sgp~val~l~~~ 78 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFY--DRLVSFMTSGPSWALILAHE 78 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCch--HHHHHHHhcCCeEEEEEEcC
Confidence 69999999999988 68888889999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||+++||+||+.|+...|+|||++||++.++|++||||++++|+
T Consensus 79 naV~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~ 127 (135)
T cd04414 79 NAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQ 127 (135)
T ss_pred CHHHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999885
No 5
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=4.3e-41 Score=261.00 Aligned_cols=119 Identities=28% Similarity=0.497 Sum_probs=115.4
Q ss_pred eEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCC-CccCCcccccccccCcEEEEEEeec
Q psy498 66 QCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQ-QEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 66 e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~-~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
++||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.++ +|| +.|+++|+|||+++|+|.|+
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~--~~l~~~m~sGp~val~l~g~ 78 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPEL--PAMVDELTSGPCIALEIAGE 78 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchH--HHHHHHHhcCCeEEEEEECC
Confidence 58999999999998 99999999999999999999999999 888 7889 999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||+++||+||..|+..+|+|||++||++.++|++||||++++|+
T Consensus 79 nav~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~ 127 (134)
T cd04412 79 NAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGP 127 (134)
T ss_pred cHHHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999884
No 6
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=5.3e-41 Score=271.07 Aligned_cols=120 Identities=21% Similarity=0.363 Sum_probs=116.0
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.+++|| ++|+++|+|||++||+|.|+
T Consensus 29 ~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff--~~Lv~~mtSGP~vam~L~g~ 106 (177)
T PLN02931 29 EERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFF--PSLVKYMTSGPVLVMVLEKE 106 (177)
T ss_pred ceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccH--HHHHHHHHhCCeEEEEEecC
Confidence 799999999999964 89999999999999999999999999 888 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||+++||+||..|+..+|+|||++||.+.++|++||||++++|+
T Consensus 107 naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~ 155 (177)
T PLN02931 107 NAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAE 155 (177)
T ss_pred CHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999884
No 7
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=6.2e-41 Score=262.00 Aligned_cols=117 Identities=18% Similarity=0.316 Sum_probs=112.0
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|+++|+|||+++|+|.|+
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff--~~Lv~~m~sgp~va~~l~g~ 78 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFY--GELVEFMSSGPCVPMILEKE 78 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccH--HHHHHHHhcCCeEEEEEecC
Confidence 489999999999954 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++||+||..| .|+|||++||++.++|++||||++++|+
T Consensus 79 nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vHgSds~e~A~ 124 (140)
T PRK14541 79 NAVADFRTLIGATDPAEA---AEGTVRKLYADSKGENIVHGSDSAENAA 124 (140)
T ss_pred cHHHHHHHHhCCCCchhC---CCCCchHHhcccccceeEECCCCHHHHH
Confidence 999999999999999999 5999999999999999999999999884
No 8
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=8.7e-41 Score=263.65 Aligned_cols=117 Identities=15% Similarity=0.307 Sum_probs=112.4
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.+++|| +.|+++|+|||+++|+|.|+
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff--~~Lv~~m~sGp~val~l~g~ 79 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFF--PGLVKYISSGPVVCMVWEGK 79 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchH--HHHHHHHhcCCEEEEEEeCC
Confidence 689999999999964 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||+++||+||+.| .|+|||++||++.++|++||||++++|.
T Consensus 80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~NavH~Sds~e~A~ 125 (149)
T PTZ00093 80 NVVKQGRKLLGATNPLES---APGTIRGDFCVDVGRNVIHGSDSVESAK 125 (149)
T ss_pred CHHHHHHHHhCCCCcccc---CCCcchhhhccccccceeecCCCHHHHH
Confidence 999999999999999977 7999999999999999999999999884
No 9
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=9.6e-41 Score=258.30 Aligned_cols=119 Identities=26% Similarity=0.452 Sum_probs=115.0
Q ss_pred eEEEEEEeCccccc-hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecch
Q psy498 66 QCTIAFLRPHANDS-KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVNA 139 (189)
Q Consensus 66 e~Tl~lIKPda~~~-~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~na 139 (189)
|+||+|||||++.+ +|+|+++|+++||.|+++||++||++ |++ |.+++|| ++|+++|+|||+++|+|.|+||
T Consensus 1 e~Tl~iIKPdav~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~--~~lv~~m~sgp~v~l~l~~~~a 78 (132)
T cd04416 1 EYTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYF--EDLVEFMTSGPSLILVLSKENA 78 (132)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccH--HHHHHHHhcCCeEEEEEeCCCH
Confidence 68999999999966 89999999999999999999999999 988 7889999 9999999999999999999999
Q ss_pred HHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 140 VQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 140 V~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|++||+++||+||..|+...|+|||++||.+.++|++||||++++|+
T Consensus 79 v~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~ 125 (132)
T cd04416 79 VEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAE 125 (132)
T ss_pred HHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHH
Confidence 99999999999999999999999999999999999999999999874
No 10
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=1.3e-40 Score=257.63 Aligned_cols=119 Identities=24% Similarity=0.344 Sum_probs=115.0
Q ss_pred eEEEEEEeCcccc--chHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecc
Q psy498 66 QCTIAFLRPHAND--SKSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVN 138 (189)
Q Consensus 66 e~Tl~lIKPda~~--~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~n 138 (189)
|+||+|||||++. ++|+||++|+++||.|+++||++||++ |++ |.++||| ++|+++|+|||+++|+|.|+|
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~--~~lv~~m~sGp~v~l~l~g~~ 78 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFF--PDLVQFMSSGPVVAMILEKDN 78 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchH--HHHHHHHhcCCeEEEEEecCC
Confidence 6899999999998 489999999999999999999999999 888 7789999 999999999999999999999
Q ss_pred hHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 139 AVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 139 aV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
||++||+++||+||+.|+...|+|||++||.+.++|++||||++++|+
T Consensus 79 av~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~ 126 (133)
T cd00595 79 AVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAA 126 (133)
T ss_pred hHHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHH
Confidence 999999999999999999999999999999999999999999999874
No 11
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.4e-40 Score=259.67 Aligned_cols=117 Identities=15% Similarity=0.311 Sum_probs=112.3
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|+++|+|||+++|+|.|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff--~~Lv~~m~sGp~va~~l~g~ 80 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFY--GELVEFMSRGPIVAAILEKE 80 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCch--HHHHHHHhcCCEEEEEEecC
Confidence 589999999999964 89999999999999999999999999 888 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||+++||+||+.| .|+|||++||++.++|++||||++++|+
T Consensus 81 nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vH~Sds~e~A~ 126 (139)
T PRK14545 81 NAVEDFRTLIGATNPADA---AEGTIRKKYAKSIGENAVHGSDSDENAQ 126 (139)
T ss_pred CHHHHHHHHhCCCCcccC---CCCChhHHhcccccceeEECCCCHHHHH
Confidence 999999999999999999 5999999999999999999999999884
No 12
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.1e-40 Score=257.24 Aligned_cols=117 Identities=21% Similarity=0.426 Sum_probs=112.2
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.+++|| +.|+++|+|||+++|+|.|+
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~--~~L~~~m~sgp~val~l~g~ 79 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFY--ERLINFMTSGRIVAMVIEGE 79 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccH--HHHHHHHccCCeEEEEEeCC
Confidence 689999999999954 89999999999999999999999999 888 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||++|||+||+.| +|+|||++||.+.++|++||||++++|+
T Consensus 80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~N~vH~Sds~~~a~ 125 (134)
T PRK14540 80 NAISTVRKMIGKTNPAEA---EPGTIRGDFGLYTPANIIHASDSKESAE 125 (134)
T ss_pred ChHHHHHHHhCCCCcccC---CCCcchhhhcccccceeEECCCCHHHHH
Confidence 999999999999999988 6999999999999999999999998874
No 13
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.5e-40 Score=251.39 Aligned_cols=117 Identities=18% Similarity=0.382 Sum_probs=114.1
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+||||+|||||++++ +|+||++++++||+|+++||++++++ |++ |.++||| ++|++||+|||+++++|+|+
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf--~~Lv~fitSgPvv~~VleGe 79 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFF--GELVEFITSGPVVAMVLEGE 79 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCcc--HHHHhheecCcEEEEEEecH
Confidence 699999999999998 89999999999999999999999999 988 8999999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||.++|+|||..| +|+|||+.||.+..+|.+|||||+++|+
T Consensus 80 ~ai~~~R~l~GaTnp~~A---~pGTIRgdfa~~~~~N~vHgSDs~esA~ 125 (135)
T COG0105 80 NAISVVRKLMGATNPANA---APGTIRGDFALSVGENVVHGSDSPESAE 125 (135)
T ss_pred hHHHHHHHHHCCCCcccC---CCCeEeeehhcccCcceEEccCCHHHHh
Confidence 999999999999999999 8999999999999999999999999985
No 14
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=9.9e-40 Score=252.11 Aligned_cols=116 Identities=19% Similarity=0.400 Sum_probs=110.9
Q ss_pred eEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecc
Q psy498 66 QCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVN 138 (189)
Q Consensus 66 e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~n 138 (189)
|+||+|||||++.+ +|+||++|.++||.|+++||++||++ |++ |.+++|| ++|+++|+|||+++|+|.|+|
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~--~~l~~~m~sgp~~al~l~~~n 78 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFF--PELVEFMTSGPVVAMVLEGEN 78 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchH--HHHHHHHhcCCEEEEEEeCCc
Confidence 68999999999954 89999999999999999999999999 988 7889999 999999999999999999999
Q ss_pred hHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 139 AVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 139 aV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
||++||+++||+||+.| +|+|||++||++.++|++||||++++|+
T Consensus 79 av~~~r~l~Gp~~~~~a---~p~slR~~~G~~~~~NavH~sd~~~~a~ 123 (130)
T cd04413 79 AVKTVRKLMGATNPADA---APGTIRGDFALSIGRNIVHGSDSVESAE 123 (130)
T ss_pred HHHHHHHHhCCCCcccc---CCCCchhhhcccccccceECCCCHHHHH
Confidence 99999999999999976 7999999999999999999999998874
No 15
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=1.2e-39 Score=252.83 Aligned_cols=117 Identities=21% Similarity=0.398 Sum_probs=111.4
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.+++|| ++|+++|+|||+++|+|.|+
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~--~~Lv~~m~sgp~~al~l~g~ 78 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFF--GELVEFMTSGPVVVMVLEGE 78 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchH--HHHHHHhccCCeEEEEEeCc
Confidence 479999999999954 89999999999999999999999999 988 7889999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||++||+++||+||..| .|+|||++||.+.++|++||||++++|+
T Consensus 79 nav~~~r~l~Gp~~p~~a---~p~siR~~~g~~~~~N~vH~sds~~~a~ 124 (134)
T PRK00668 79 NAIAKVRELMGATNPAEA---APGTIRGDFALSIGENVVHGSDSPESAA 124 (134)
T ss_pred hHHHHHHHHhCCCCcccc---CCCcchhhhccccccccEECCCCHHHHH
Confidence 999999999999999866 7999999999999999999999998874
No 16
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.6e-39 Score=257.62 Aligned_cols=117 Identities=17% Similarity=0.310 Sum_probs=110.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh---------hhCCCccCCcccccccccCcEEEE
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR---------IMSQQEYTARIPISSMLNGPVIVF 132 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e---------~~~~~~f~~~~lv~~mtsGpvval 132 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.+++|| ++|+++|+|||+++|
T Consensus 5 ~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff--~~Lv~~mtsGP~val 82 (169)
T PRK14543 5 IQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVW--KSLIKFISSSPVFVF 82 (169)
T ss_pred cceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchH--HHHHHHHccCCeEEE
Confidence 799999999999964 89999999999999999999999999 886 4578999 999999999999999
Q ss_pred EEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccC----------CCCcEEecCCCcccCC
Q psy498 133 QLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHL----------GASNLYVATEETVQED 186 (189)
Q Consensus 133 ~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~----------~~~N~vHgSds~~~a~ 186 (189)
+|.|+|||+.||+++||+||..| .|+|||++||.+ .++|++|||||+++|+
T Consensus 83 vl~g~naI~~~R~l~Gpt~p~~a---~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~ 143 (169)
T PRK14543 83 VVEGVESVEVVRKFCGSTEPKLA---IPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDAL 143 (169)
T ss_pred EEECCCHHHHHHHHhCCCCcccc---CCCcchhhhcccccccccccccceeeEEECCCCHHHHH
Confidence 99999999999999999999877 799999999997 7999999999999884
No 17
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=1.2e-38 Score=266.08 Aligned_cols=117 Identities=15% Similarity=0.308 Sum_probs=113.3
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+|||+++|+|.|+
T Consensus 88 ~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf--~~Lv~fMtSGPvvamvL~Ge 165 (238)
T PLN02619 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFF--NGLCDFLSSGPVVAMVWEGE 165 (238)
T ss_pred hceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcH--HHHHHHHhcCCeEEEEEECC
Confidence 899999999999998 89999999999999999999999999 888 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|+|++||+++||+||..| .|+|||++||++.++|++||||++++|+
T Consensus 166 naV~~~R~LiGpTdP~~A---~PgTIRg~fG~~~~rNaVHgSDS~EsA~ 211 (238)
T PLN02619 166 GVIKYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAK 211 (238)
T ss_pred cHHHHHHHHhCCCCcccc---CCCcchhhhcccccceeeecCCCHHHHH
Confidence 999999999999999876 7999999999999999999999999884
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=2.7e-38 Score=244.82 Aligned_cols=116 Identities=30% Similarity=0.490 Sum_probs=104.4
Q ss_pred eEEEEEEeCcccc--chHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecc
Q psy498 66 QCTIAFLRPHAND--SKSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVN 138 (189)
Q Consensus 66 e~Tl~lIKPda~~--~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~n 138 (189)
|+||+|||||++. ++|+||++|.++||.|+++||++||++ |++ |.++++| +.++++|+|||+++|+|.|+|
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~--~~lv~~m~sgp~v~l~l~g~~ 78 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFF--DALVDFMSSGPSVALVLEGEN 78 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTH--HHHHHHHTSSEEEEEEEESTT
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcce--ecccceeecCCcEEEEeecch
Confidence 7999999999997 489999999999999999999999999 998 7789999 999999999999999999999
Q ss_pred hHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 139 AVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 139 aV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
||++||+++||+||+.| +|+|||++||.+..+|++||||++++|.
T Consensus 79 av~~~r~l~Gp~dp~~a---~p~slR~~~g~~~~~N~vH~sd~~~~a~ 123 (135)
T PF00334_consen 79 AVEKWRQLCGPTDPEEA---APGSLRARYGTDIIRNAVHGSDSPEDAE 123 (135)
T ss_dssp HHHHHHHHH--SSGGGS---STTSHHHHH-SSSTG-SEEE-SSHHHHH
T ss_pred hhHHHHHhcCCcchhhh---ccccchhceeecCCCCeEECCCCHHHHH
Confidence 99999999999999999 8999999999999999999999999874
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=1.2e-37 Score=241.29 Aligned_cols=116 Identities=22% Similarity=0.418 Sum_probs=109.6
Q ss_pred eEEEEEEeCcccc--chHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecc
Q psy498 66 QCTIAFLRPHAND--SKSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVN 138 (189)
Q Consensus 66 e~Tl~lIKPda~~--~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~n 138 (189)
|+||+|||||++. ++|+||++|.++||.|+++||++||++ |++ |.++++| ++|+++|+|||+++|+|.|+|
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~--~~lv~~m~sgp~~~l~l~g~n 78 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFF--NDLVEFMTSGPVVAMVLEGED 78 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchH--HHHHHHhhcCCeEEEEEecCC
Confidence 6899999999995 489999999999999999999999999 888 7789999 999999999999999999999
Q ss_pred hHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 139 AVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 139 aV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
||++||+++||++|..+ .|+|||++||.+.++|++||||++++|.
T Consensus 79 av~~~r~l~Gp~~~~~~---~p~slR~~~G~~~~~N~vH~sd~~~~a~ 123 (135)
T smart00562 79 AVKTWRTLMGPTDPREA---APGTIRGDFGLDIGRNAVHGSDSPESAE 123 (135)
T ss_pred HHHHHHHHhCCCChhhc---CCcchHHhhcccccceeEECCCCHHHHH
Confidence 99999999999998555 7999999999999999999999998874
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2e-36 Score=245.44 Aligned_cols=117 Identities=25% Similarity=0.450 Sum_probs=109.6
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHhh--------------------------------
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKRI-------------------------------- 109 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e~-------------------------------- 109 (189)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||++ |+++
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 689999999999964 89999999999999999999999999 8882
Q ss_pred -----hCCCccCCcccccccccCcEEEEEEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCC----------CCc
Q psy498 110 -----MSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLG----------ASN 174 (189)
Q Consensus 110 -----~~~~~f~~~~lv~~mtsGpvval~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~----------~~N 174 (189)
.+++|| ++|+++|+||||++|+|.|+|||++||++|||++|..| .|+|||+.||.+. ++|
T Consensus 83 ~~~~~~gk~~~--~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A---~P~TIR~~fg~~~~~~~~~~~~~~~N 157 (183)
T PRK14544 83 DDPVEVGKKVK--ESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKA---PPGTIRGDYSIDSPDLAAEEGRVVYN 157 (183)
T ss_pred ccccccCCchh--HHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCcccc---CCCCchhhhcccccccccccccceee
Confidence 367899 99999999999999999999999999999999999888 7999999999984 799
Q ss_pred EEecCCCcccCC
Q psy498 175 LYVATEETVQED 186 (189)
Q Consensus 175 ~vHgSds~~~a~ 186 (189)
++||||++++|+
T Consensus 158 avH~Sds~e~A~ 169 (183)
T PRK14544 158 LVHASDSPEEAE 169 (183)
T ss_pred EEECCCCHHHHH
Confidence 999999999885
No 21
>KOG0888|consensus
Probab=100.00 E-value=1.4e-36 Score=239.99 Aligned_cols=120 Identities=21% Similarity=0.406 Sum_probs=116.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||++||||++++ +|+||.+++++||.|+++|+++++++ +++ |.++||| +.||.+|+|||++||++.|.
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff--~~Lv~~m~SGPvvamv~~g~ 82 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFF--PGLVEYMSSGPVVAMVLEGD 82 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccH--HHHHHHHhcCcceehhhcCC
Confidence 589999999999977 79999999999999999999999999 888 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++||+++..|+..+|+|||++||++..+|++|||||.++|+
T Consensus 83 ~~V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~ 131 (156)
T KOG0888|consen 83 NVVQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAE 131 (156)
T ss_pred CHHHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999986
No 22
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.
Probab=99.15 E-value=2.1e-11 Score=90.94 Aligned_cols=50 Identities=36% Similarity=0.689 Sum_probs=45.8
Q ss_pred CCCCC----ceeeeccCCCC--------CCcCCeEecceeEEeeeeEEEeecCCccceeeccCChhhhhhhcC
Q psy498 2 DVKKN----KIFLHRTHCDE--------ILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLES 62 (189)
Q Consensus 2 d~k~~----r~fLkr~~~~~--------i~~~dl~ig~~v~i~sR~l~i~~~~~~~~~~vdy~d~~t~~~l~~ 62 (189)
+++|. .+||||+++|. ++.+||+||++|+||||++.| +|+ |+|||+.+.+
T Consensus 41 ~~~NsG~~~g~fLkR~rvp~~~~~~~~~y~~~Dl~vG~~v~i~gr~f~I----------~d~-D~fTr~~~~~ 102 (104)
T smart00676 41 DVRNSGILQGTFLRRQRVPKPPPDDPEYYHASDLNVGTTINVFGRQFRI----------YDC-DEFTRNYLES 102 (104)
T ss_pred ccCCCCCCCccEeeeeEcCCCCccccCccCHHHcCCCCEEEEeCEEEEE----------EEC-CHHHHHHHHh
Confidence 35677 99999999987 999999999999999999999 999 9999998754
No 23
>KOG0043|consensus
Probab=58.85 E-value=7.2 Score=35.67 Aligned_cols=36 Identities=31% Similarity=0.635 Sum_probs=31.2
Q ss_pred CCCcCCeEecceeEEeeeeEEEeecCCccceeeccCChhhhhhhcCc
Q psy498 17 EILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLEST 63 (189)
Q Consensus 17 ~i~~~dl~ig~~v~i~sR~l~i~~~~~~~~~~vdy~d~~t~~~l~~~ 63 (189)
-++..||-+|-+|+||.|+..| +|. |.|||.-|..+
T Consensus 141 ~~hw~DLNvg~~i~if~~~yri----------t~C-D~FTrvFl~~q 176 (452)
T KOG0043|consen 141 FVHWSDLNVGTDIQIFDRIYRI----------TDC-DTFTRVFLNFQ 176 (452)
T ss_pred eEEeeeccCCcceEeeeeEEEe----------ccc-cHHHHHHhhhc
Confidence 4788999999999999999999 875 88999877644
No 24
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.03 E-value=70 Score=25.87 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=35.3
Q ss_pred ceEEEEEEeCccccchHHHHHHHHHCCCeEEeEEeeechHH-HHh
Q psy498 65 YQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEE-IKR 108 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e 108 (189)
...++++++|..+...-+|.+.|.+.-..+.++.. |+++ |++
T Consensus 72 ~~s~iv~~ePr~yeda~~ia~~lk~~k~Vvinl~~--m~~~qArR 114 (167)
T COG1799 72 DSSKIVLLEPRKYEDAQEIADYLKNRKAVVINLQR--MDPAQARR 114 (167)
T ss_pred CceEEEEecCccHHHHHHHHHHHhcCceEEEEeee--CCHHHHHH
Confidence 57899999999999999999999988887777654 4777 665
No 25
>KOG2738|consensus
Probab=27.91 E-value=6.1 Score=35.06 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=25.8
Q ss_pred ceEEEEEEeCcccc-chHHHHHHHH-HCCCeEEe
Q psy498 65 YQCTIAFLRPHAND-SKSELFQDLI-NHGFEFIN 96 (189)
Q Consensus 65 ~e~Tl~lIKPda~~-~~g~Ii~~I~-~~Gf~I~~ 96 (189)
+++.++++||.+-- .+|+||+... ++||.++.
T Consensus 242 L~kaI~~~kpGv~freiG~iI~kha~~~g~sVVr 275 (369)
T KOG2738|consen 242 LEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVR 275 (369)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHhhhcCceeeh
Confidence 67889999999764 4999999885 56888764
No 26
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=27.71 E-value=72 Score=21.59 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=25.4
Q ss_pred EEEEeCccccchHHHHHHHHHCCCeEEeEEeeechHH-HHh
Q psy498 69 IAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEE-IKR 108 (189)
Q Consensus 69 l~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e 108 (189)
+++++|.-+..+.+|.+.|.+..-.|.++. .|+.+ +++
T Consensus 1 I~v~~p~~~~D~~~i~~~l~~g~~Vivnl~--~l~~~~~~R 39 (73)
T PF04472_consen 1 IVVFEPKSFEDAREIVDALREGKIVIVNLE--NLDDEEAQR 39 (73)
T ss_dssp -EEEE-SSGGGHHHHHHHHHTT--EEEE-T--TS-HHHHHH
T ss_pred CEEEeeCCHHHHHHHHHHHHcCCEEEEECC--CCCHHHHHH
Confidence 368999999999999999999877777664 44555 555
No 27
>PF14502 HTH_41: Helix-turn-helix domain
Probab=27.51 E-value=13 Score=23.93 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=14.9
Q ss_pred cCCccceeeccCChhhhh
Q psy498 41 YGDRILKIVDYGDRYTKS 58 (189)
Q Consensus 41 ~~~~~~~~vdy~d~~t~~ 58 (189)
.|+||-+|-||.++|-..
T Consensus 2 ~GdRi~tI~e~~~~~~vs 19 (48)
T PF14502_consen 2 VGDRIPTISEYSEKFGVS 19 (48)
T ss_pred CCcccCCHHHHHHHhCcc
Confidence 589999999998887553
No 28
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=23.47 E-value=95 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=17.7
Q ss_pred hHHHHHHHHHCCCeEEeEEe
Q psy498 80 KSELFQDLINHGFEFINLLM 99 (189)
Q Consensus 80 ~g~Ii~~I~~~Gf~I~~~k~ 99 (189)
..++|..|+..||..+.+|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 57899999999999999874
No 29
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=21.01 E-value=2.4e+02 Score=20.29 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=43.4
Q ss_pred eEEEEEEeCccccc-----hHHHHHHHHHCCCeEEeEEeeechHHHHhhhCCCccCCcccccccccCcEEEEEEeec-ch
Q psy498 66 QCTIAFLRPHANDS-----KSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGV-NA 139 (189)
Q Consensus 66 e~Tl~lIKPda~~~-----~g~Ii~~I~~~Gf~I~~~k~~~Lt~~a~e~~~~~~f~~~~lv~~mtsGpvval~L~g~-na 139 (189)
=.+++|++|+.-.. +..+-+.|.+.|-+|......-. +. -.| -++-...|=-+.+.+.++ .+
T Consensus 8 YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~-r~-------LAY----~I~k~~~G~Yv~~~f~~~~~~ 75 (97)
T CHL00123 8 YETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGK-RK-------LSY----KINKYEDGIYIQMNYSGNGKL 75 (97)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecC-ee-------eeE----EcCCCCEEEEEEEEEEECHHH
Confidence 47899999997654 45555567788988887765421 11 012 234445565566666654 46
Q ss_pred HHHHHHhhC
Q psy498 140 VQKLQDVVG 148 (189)
Q Consensus 140 V~~~r~l~G 148 (189)
+..+...+.
T Consensus 76 i~eler~lr 84 (97)
T CHL00123 76 VNSLEKALK 84 (97)
T ss_pred HHHHHHHhC
Confidence 777666553
No 30
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=20.51 E-value=2.3e+02 Score=18.96 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=25.8
Q ss_pred EEEEEeCccccchHHHHHHHHHCCCeEEeEEee
Q psy498 68 TIAFLRPHANDSKSELFQDLINHGFEFINLLMV 100 (189)
Q Consensus 68 Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~~ 100 (189)
++.+.-||-...+.+|++.+.+.|..|..+...
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~ 35 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESR 35 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE
Confidence 555655776555899999999999999988543
No 31
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.38 E-value=2e+02 Score=17.73 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=23.8
Q ss_pred EEEEEeCccccchHHHHHHHHHCCCeEEeEEe
Q psy498 68 TIAFLRPHANDSKSELFQDLINHGFEFINLLM 99 (189)
Q Consensus 68 Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~ 99 (189)
|+.+.-+|--.-+++|.+.+.+.|..|..+..
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~ 32 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRV 32 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEE
Confidence 34555555544588999999999999987764
Done!