Query psy498
Match_columns 189
No_of_seqs 179 out of 1078
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztp_A Nucleoside diphosphate 100.0 4.1E-44 1.4E-48 279.4 8.1 120 65-186 3-129 (142)
2 4hr2_A Nucleoside diphosphate 100.0 9E-44 3.1E-48 278.1 7.4 117 65-186 7-130 (145)
3 3evo_A NDP kinase, NDK, nucleo 100.0 8.2E-43 2.8E-47 273.1 7.8 117 65-186 6-130 (146)
4 4fkx_A NDK B, nucleoside dipho 100.0 1E-42 3.5E-47 276.2 7.3 117 65-186 11-134 (161)
5 3mpd_A Nucleoside diphosphate 100.0 9E-43 3.1E-47 274.2 6.9 117 65-186 5-128 (151)
6 3q8u_A Nucleoside diphosphate 100.0 1.4E-42 4.6E-47 274.6 7.4 117 65-186 1-124 (157)
7 1k44_A Nucleoside diphosphate 100.0 2.6E-42 9E-47 267.5 8.1 117 65-186 2-126 (136)
8 3fkb_A NDP kinase, NDK, nucleo 100.0 1.8E-42 6.1E-47 273.5 7.2 117 65-186 8-131 (155)
9 1wkj_A Nucleoside diphosphate 100.0 1.7E-42 5.8E-47 268.8 6.9 117 65-186 1-124 (137)
10 1w7w_A Nucleoside diphosphate 100.0 2.7E-42 9.2E-47 278.7 7.6 128 51-186 21-155 (182)
11 3l7u_A Nucleoside diphosphate 100.0 2.3E-42 7.8E-47 276.6 6.4 122 59-186 19-147 (172)
12 1nhk_R Nucleoside diphosphate 100.0 4.7E-42 1.6E-46 268.3 8.0 117 65-186 2-125 (144)
13 2hur_A NDK, nucleoside diphosp 100.0 4.4E-42 1.5E-46 267.9 7.5 117 65-186 2-125 (142)
14 3r9l_A Nucleoside diphosphate 100.0 2.5E-42 8.6E-47 272.7 6.0 117 65-186 7-130 (155)
15 2vu5_A Nucleoside diphosphate 100.0 4.8E-42 1.6E-46 269.4 6.4 117 65-186 1-124 (148)
16 1pku_A Nucleoside diphosphate 100.0 8.6E-42 2.9E-46 268.5 7.1 117 65-186 2-125 (150)
17 1xiq_A Nucleoside diphosphate 100.0 1.5E-41 5E-46 268.8 8.0 117 65-186 9-132 (157)
18 3bbb_A Nucleoside diphosphate 100.0 1.2E-41 4.1E-46 267.9 7.3 117 65-186 3-126 (151)
19 1u8w_A Nucleoside diphosphate 100.0 1.2E-41 3.9E-46 267.5 6.8 117 65-186 1-124 (149)
20 1nb2_A Nucleoside diphosphate 100.0 7.8E-42 2.7E-46 268.7 5.4 117 65-186 2-125 (150)
21 1ehw_A NDPK H4, nucleoside dip 100.0 2.4E-41 8.1E-46 268.7 8.0 117 65-186 24-147 (162)
22 3b54_A NDK, NDP kinase, nucleo 100.0 1.4E-41 4.6E-46 270.0 6.6 121 60-186 9-136 (161)
23 1s57_A Nucleoside diphosphate 100.0 2.5E-41 8.6E-46 266.6 7.5 117 65-186 5-128 (153)
24 2az3_A Nucleoside diphosphate 100.0 5.6E-41 1.9E-45 267.1 8.8 121 60-186 4-133 (164)
25 1zs6_A Nucleoside diphosphate 100.0 2.9E-41 9.8E-46 270.0 7.0 127 53-186 11-144 (169)
26 2dxe_A Nucleoside diphosphate 100.0 4.5E-41 1.6E-45 266.8 7.4 117 65-186 7-133 (160)
27 3js9_A Nucleoside diphosphate 100.0 4.1E-41 1.4E-45 265.9 6.7 117 65-186 9-132 (156)
28 4dz6_A Nucleoside diphosphate 100.0 2.3E-40 7.7E-45 268.8 5.7 117 65-186 26-164 (190)
29 1xqi_A Nucleoside diphosphate 100.0 4.4E-38 1.5E-42 256.7 4.5 117 65-186 15-181 (195)
30 3bh7_B Protein XRP2; protein-p 99.9 1.7E-26 5.8E-31 202.9 7.6 99 65-186 235-336 (352)
31 2z14_A EF-hand domain-containi 99.1 3.2E-11 1.1E-15 92.6 2.2 52 1-63 53-118 (133)
32 3p04_A Uncharacterized BCR; SE 43.5 25 0.00087 24.2 3.7 41 66-108 4-45 (87)
33 3m05_A Uncharacterized protein 21.6 87 0.003 22.5 3.5 29 65-96 6-34 (114)
No 1
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=4.1e-44 Score=279.38 Aligned_cols=120 Identities=24% Similarity=0.450 Sum_probs=116.8
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+||+|.|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff--~~Lv~~mtSGPvva~vl~g~ 80 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFF--QELVEFMSSGPVVAAVLEGE 80 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEEE
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchH--HHHHHHhcCCCEEEEEEeCC
Confidence 699999999999987 79999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..|+..+|+|||++||.+..+|++|||||+++|+
T Consensus 81 naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~ 129 (142)
T 3ztp_A 81 DAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQ 129 (142)
T ss_dssp THHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHH
T ss_pred CHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999885
No 2
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=9e-44 Score=278.08 Aligned_cols=117 Identities=18% Similarity=0.361 Sum_probs=113.7
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+||+|.|+
T Consensus 7 ~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff--~~Lv~~mtSGPvva~vleg~ 84 (145)
T 4hr2_A 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFF--KDLVEFMISGPVMIQVLEGE 84 (145)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEEE
T ss_pred HHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchH--HHHHHHhcCCCEEEEEEEcC
Confidence 699999999999987 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+|+|||||..| .|+|||++||.+..+|++|||||+++|+
T Consensus 85 ~aV~~~R~l~G~tdp~~A---~pgtIR~~fg~~~~~N~vHgSDs~e~A~ 130 (145)
T 4hr2_A 85 DAILKNRDLMGATDPKKA---EKGTIRADFADSIDANAVHGSDAPETAR 130 (145)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCSBTTBCSEEECCSHHHHH
T ss_pred CcHhHHhhccCCCCcccC---CCCCcHHHhcCCcCccceECCCCHHHHH
Confidence 999999999999999999 6999999999999999999999999985
No 3
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=8.2e-43 Score=273.07 Aligned_cols=117 Identities=18% Similarity=0.315 Sum_probs=113.6
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeec-hHH-HHh----hhCCCccCCcccccccccCcEEEEEEee
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEF-NEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRG 136 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~L-t~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g 136 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++| |++ |++ |.++||| +.|++||+||||+||+|.|
T Consensus 6 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYF--NDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEE
T ss_pred ceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccH--HHHHHHHhcCCeEEEEEeC
Confidence 799999999999986 79999999999999999999999 999 988 8899999 9999999999999999999
Q ss_pred cchHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 137 VNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 137 ~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
+|||+.||+|+|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 84 ~naV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~ 130 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLAS---APGTIRGDLANDIRENLIHASDSEDSAV 130 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCSSSCCSEEECCSHHHHH
T ss_pred CCHHHHHHHHcCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHH
Confidence 9999999999999999999 8999999999999999999999999885
No 4
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=1e-42 Score=276.18 Aligned_cols=117 Identities=17% Similarity=0.345 Sum_probs=113.4
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 11 ~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 88 (161)
T 4fkx_A 11 SERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFY--SGLVSYFSSGPIVGMVWEGL 88 (161)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred cccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccH--HHHHHHHhCCCcEEEEEecc
Confidence 689999999999987 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 89 naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~ 134 (161)
T 4fkx_A 89 GVVKGGRVLLGATNPADS---LPGTIRGDFAVDVGRNVCHGSDSVESAK 134 (161)
T ss_dssp THHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHH
T ss_pred ChHHHHHHHhcCCChhhc---CCCChhHhhCCCccceeEEeCCCHHHHH
Confidence 999999999999999988 7999999999999999999999999885
No 5
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=9e-43 Score=274.22 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=113.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+||+|+|+
T Consensus 5 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 82 (151)
T 3mpd_A 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFF--SEMVEDMMSGMVLAMVWVGK 82 (151)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred eEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccH--HHHHHHhcCCCEEEEEEeCC
Confidence 799999999999986 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 83 naV~~~R~l~G~t~p~~a---~PgtiR~~fg~~~~~N~vHgSDs~esA~ 128 (151)
T 3mpd_A 83 DAVSIGRKLIGETNPQAA---SVGTIRGDYGVSTGKNIIHGSDCVENAE 128 (151)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCSSTTCSEEECSSHHHHH
T ss_pred cHHHHHHHHhCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHH
Confidence 999999999999999988 8999999999999999999999999885
No 6
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1.4e-42 Score=274.63 Aligned_cols=117 Identities=18% Similarity=0.303 Sum_probs=113.2
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+||+|.|+
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 78 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFY--NDLISFITSAPVFAMVVEGE 78 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccH--HHHHHHhcCCCEEEEEEeCC
Confidence 489999999999986 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 79 naV~~~R~l~GpTdp~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~ 124 (157)
T 3q8u_A 79 DAVNVSRHIIGSTNPSEA---SPGSIRGDLGLTVGRNIIHGSDSLESAE 124 (157)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHH
T ss_pred CHHHHHHHHcCCCChhhc---CCCChHHHhCCCCCCeeEEeCCCHHHHH
Confidence 999999999999999998 7999999999999999999999999885
No 7
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=2.6e-42 Score=267.45 Aligned_cols=117 Identities=15% Similarity=0.300 Sum_probs=113.3
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||++|+|.|+
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva~vl~g~ 79 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFF--GSLLEFITSGPVVAAIVEGT 79 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHTTTSCEEEEEEEET
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHhccCCEEEEEEeCC
Confidence 589999999999987 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChh-hhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADRE-EALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~-~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||. .| +|+|||++||.+..+|++|||||+++|+
T Consensus 80 ~aV~~~R~l~G~t~p~~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~ 126 (136)
T 1k44_A 80 RAIAAVRQLAGGTDPVQAA---APGTIRGDFALETQFNLVHGSDSAESAQ 126 (136)
T ss_dssp THHHHHHHHHCCSSTTTTS---CTTSHHHHHCCCSTTCCEEECSSHHHHH
T ss_pred CHHHHHHHHhCCCCccccC---CCCCcHHHhcCCccceEEEeCCCHHHHH
Confidence 9999999999999999 88 8999999999999999999999999985
No 8
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=1.8e-42 Score=273.53 Aligned_cols=117 Identities=15% Similarity=0.238 Sum_probs=113.4
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+||+|.|+
T Consensus 8 ~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 85 (155)
T 3fkb_A 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF--GGLVSFITSGPVVAMVFEGK 85 (155)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred cceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchH--HHHHHHhcCCCEEEEEEeCC
Confidence 699999999999986 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 86 naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~ 131 (155)
T 3fkb_A 86 GVVASARLMIGVTNPLAS---APGSIRGDFGVDVGRNIIGGSDSVESAN 131 (155)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHH
T ss_pred CHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHH
Confidence 999999999999999988 8999999999999999999999999885
No 9
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=1.7e-42 Score=268.81 Aligned_cols=117 Identities=16% Similarity=0.355 Sum_probs=113.2
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff--~~Lv~~mtsGPvva~vl~g~ 78 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFF--PGLVRFITSGPVVAMVLEGP 78 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSH--HHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHhcCCCEEEEEEeCC
Confidence 489999999999987 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 79 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~ 124 (137)
T 1wkj_A 79 GVVAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSATLEDAQ 124 (137)
T ss_dssp THHHHHHHHHCCSSTTTC---CTTSHHHHHCCCSTTCSEEECSSHHHHH
T ss_pred cHHHHHHHHhCCCCCCcC---CCCcchHHhCCCcccceEEecCCHHHHH
Confidence 999999999999999999 8999999999999999999999999985
No 10
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-42 Score=278.67 Aligned_cols=128 Identities=14% Similarity=0.264 Sum_probs=115.1
Q ss_pred cCChhhhhhhcCccceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccc
Q psy498 51 YGDRYTKSYLESTNYQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISS 123 (189)
Q Consensus 51 y~d~~t~~~l~~~~~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~ 123 (189)
||+.. ..+... +|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|+++
T Consensus 21 ~f~~~--~~~~~~-~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff--~~Lv~~ 95 (182)
T 1w7w_A 21 YFQGA--MDPEAE-LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF--NGLCDF 95 (182)
T ss_dssp -----------CT-TCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHH
T ss_pred hcCCC--ccccch-hceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcch--HHHHHH
Confidence 77664 345666 899999999999987 89999999999999999999999999 988 8899999 999999
Q ss_pred cccCcEEEEEEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 124 MLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 124 mtsGpvval~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|+||||+||+|+|+|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 96 mtSGPvvamvleG~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~ 155 (182)
T 1w7w_A 96 LSSGPVIAMVWEGEGVITYGRKLIGATDPQKS---APGTIRGDLAVVVGRNIIHGSDGPETAK 155 (182)
T ss_dssp HTSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHH
T ss_pred HcCCCEEEEEEecccHHHHHHHHhCCCCCCCC---CCCChHHHhCCCccceeEEeCCCHHHHH
Confidence 99999999999999999999999999999998 8999999999999999999999999985
No 11
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=276.64 Aligned_cols=122 Identities=16% Similarity=0.339 Sum_probs=115.2
Q ss_pred hhcCccceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEE
Q psy498 59 YLESTNYQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIV 131 (189)
Q Consensus 59 ~l~~~~~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvva 131 (189)
.+.++ +|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+|
T Consensus 19 ~~~~~-~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva 95 (172)
T 3l7u_A 19 SHMAN-CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFF--AGLVKYMHSGPVVA 95 (172)
T ss_dssp --CGG-GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHHSSCEEE
T ss_pred hhcch-hceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchH--HHHHHHHhcCCeEE
Confidence 44555 899999999999987 89999999999999999999999999 988 7899999 99999999999999
Q ss_pred EEEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 132 FQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 132 l~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|+|+|+|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 96 mvleg~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~VHgSDs~esA~ 147 (172)
T 3l7u_A 96 MVWEGLNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVESAE 147 (172)
T ss_dssp EEEESTTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCCGGGCCEEECSSHHHHH
T ss_pred EEEeCCCHHHHHHHHcCCCChhhc---CCCChhHHhcCCCCCcEEEeCCCHHHHH
Confidence 999999999999999999999988 7999999999999999999999999885
No 12
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=4.7e-42 Score=268.31 Aligned_cols=117 Identities=15% Similarity=0.315 Sum_probs=113.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva~vl~g~ 79 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFF--KDLVQFMISGPVVLMVLEGE 79 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHhccCCEEEEEEecc
Confidence 589999999999987 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 125 (144)
T 1nhk_R 80 NAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSDSLENAK 125 (144)
T ss_dssp THHHHHHHHHCCSSGGGC---CTTSHHHHHCCSSSSCSEEECSSHHHHH
T ss_pred CHHHHHHHHhCCCCCCcC---CCCcchHHhCCCCcceeEEeCCCHHHHH
Confidence 999999999999999998 8999999999999999999999999885
No 13
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=4.4e-42 Score=267.93 Aligned_cols=117 Identities=22% Similarity=0.357 Sum_probs=113.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva~vl~g~ 79 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFF--DGLVEFMTSGPIVVSVLEGE 79 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCch--HHHHHHhcCCCEEEEEEecc
Confidence 589999999999987 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~ 125 (142)
T 2hur_A 80 NAVQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGSDSVESAA 125 (142)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCSSSTTCSEEECSSHHHHH
T ss_pred cHHHHHHHHhCCCCcccC---CCCcchHHhCCCcccceEEeCCCHHHHH
Confidence 999999999999999998 8999999999999999999999999985
No 14
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=2.5e-42 Score=272.67 Aligned_cols=117 Identities=14% Similarity=0.252 Sum_probs=92.1
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 84 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFF--AGLCKFLSSGPVCAMVWEGA 84 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC-----------------------------CCSCCEEEEEEST
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccH--HHHHHHhcCCCEEEEEEeCC
Confidence 599999999999986 89999999999999999999999999 988 7889999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 85 naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~ 130 (155)
T 3r9l_A 85 NVVSISRTMMGVTKPAES---APGTIRGDFGIDVGRNIIHGSANLDDAA 130 (155)
T ss_dssp THHHHHHHHHCCSCTTTC---CTTSHHHHHCCSSTTCCEEECSSHHHHH
T ss_pred CHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHH
Confidence 999999999999999988 7999999999999999999999999885
No 15
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=4.8e-42 Score=269.39 Aligned_cols=117 Identities=15% Similarity=0.318 Sum_probs=113.0
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva~vleg~ 78 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFF--GELVDFITSGPVFAMVWQGE 78 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHH--HHHHHHHTTCCEEEEEEEST
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHhcCCCEEEEEEecc
Confidence 489999999999987 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 79 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 124 (148)
T 2vu5_A 79 GVVDTARNMMGKTRPHEA---APGTIRGDFGVTVAKNIIHGSDSLESAE 124 (148)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCCSTTCSEEECSSHHHHH
T ss_pred ChHHHHHHHhCCCCcccc---CCCChHHHhcCCcccceEEeCCCHHHHH
Confidence 999999999999999987 7999999999999999999999999985
No 16
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=8.6e-42 Score=268.45 Aligned_cols=117 Identities=14% Similarity=0.308 Sum_probs=113.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva~vleg~ 79 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFF--PGLVEYIISGPVVAMVWEGK 79 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTH--HHHHHHHHSSCEEEEEEEST
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCcc--HHHHHHhcCCCEEEEEEecc
Confidence 699999999999987 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 125 (150)
T 1pku_A 80 DVVATGRRIIGATRPWEA---APGTIRADYAVEVGRNVIHGSDSVDNGK 125 (150)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCSBTTBCSEEECSSHHHHH
T ss_pred chHHHHHHHhCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHH
Confidence 999999999999999998 8999999999999999999999999885
No 17
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=1.5e-41 Score=268.78 Aligned_cols=117 Identities=15% Similarity=0.356 Sum_probs=113.8
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+||+|+|+
T Consensus 9 ~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 86 (157)
T 1xiq_A 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFF--KNLVAYISKGPVVAMVWEGV 86 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSC--TTHHHHHTTSCEEEEEEEST
T ss_pred hheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHHcCCCEEEEEEecc
Confidence 799999999999988 89999999999999999999999999 998 7889999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||+.||.+..+|++|||||+++|+
T Consensus 87 naV~~~R~l~G~T~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 132 (157)
T 1xiq_A 87 DMVKQGRKLIGETNPLTS---NTGTIRGDFCLEVSKNVIHGSDSVASAN 132 (157)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHH
T ss_pred cchHHHHHHcCCCCCCcC---CCCChHHHhCCCCCceeEEeCCCHHHHH
Confidence 999999999999999998 7999999999999999999999999985
No 18
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=1.2e-41 Score=267.88 Aligned_cols=117 Identities=16% Similarity=0.361 Sum_probs=113.1
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++|+++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 3 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 80 (151)
T 3bbb_A 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFF--PGLVKYMNSGPVVAMVWEGL 80 (151)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCch--HHHHHHHccCCEEEEEEecC
Confidence 699999999999987 89999999999999999999999999 988 7889999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| .|+|||++||.+..+|++|||||+++|+
T Consensus 81 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 126 (151)
T 3bbb_A 81 NVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVKSAE 126 (151)
T ss_dssp THHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHH
T ss_pred CHHHHHHHHhCCCCcccC---CCCCcHHHhcCCcccceEEecCCHHHHH
Confidence 999999999999999998 5999999999999999999999999885
No 19
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=1.2e-41 Score=267.47 Aligned_cols=117 Identities=15% Similarity=0.316 Sum_probs=113.2
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||++|+|.|+
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff--~~Lv~~mtSGPvva~vleg~ 78 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFF--SGLVDYIVSGPVVAMIWEGK 78 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcc--hhHHhHhcCCCEEEEEEecC
Confidence 489999999999988 89999999999999999999999999 998 7889999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||+.||.+..+|++|||||+++|+
T Consensus 79 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 124 (149)
T 1u8w_A 79 NVVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSDSVESAR 124 (149)
T ss_dssp THHHHHHHHHCCSSTTTC---CTTSHHHHHCCSTTSCSEEECSSHHHHH
T ss_pred CchHHHHHHhCCCCcccC---CCCCcHHHHCCCCcCceEEecCCHHHHH
Confidence 999999999999999998 7999999999999999999999999885
No 20
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=7.8e-42 Score=268.69 Aligned_cols=117 Identities=13% Similarity=0.284 Sum_probs=113.3
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff--~~Lv~~mtSGPvva~vl~g~ 79 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFF--GGLVGGATSGPVFAMVWEGL 79 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTH--HHHHHHHTSSCCBEEEEEST
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHhcCCCEEEEEEecC
Confidence 689999999999987 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 80 naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 125 (150)
T 1nb2_A 80 NAAATARQILGATNPSDA---APGTIRGDFGVSAGRNAIHGSDSAGSAA 125 (150)
T ss_dssp THHHHHHHHHCCSSTTSS---CTTSHHHHSCSCSSSCSEEECSSHHHHH
T ss_pred CHHHHHHHHhCCCCcccC---CCCChHHHhcCCccceeEEeCCCHHHHH
Confidence 999999999999999987 7999999999999999999999999885
No 21
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2.4e-41 Score=268.74 Aligned_cols=117 Identities=21% Similarity=0.379 Sum_probs=113.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 24 ~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 101 (162)
T 1ehw_A 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFY--PALIRYMSSGPVVAMVWEGY 101 (162)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred hceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcch--HHHHHHHcCCCEEEEEEech
Confidence 699999999999987 89999999999999999999999999 998 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 102 naV~~~R~l~G~T~p~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~ 147 (162)
T 1ehw_A 102 NVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQ 147 (162)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSCCSEEECSSHHHHH
T ss_pred hHHHHHHHHhCCCCCCCC---CCCChHHHhCCCCCCeEEEECCCHHHHH
Confidence 999999999999999998 7999999999999999999999999985
No 22
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=269.98 Aligned_cols=121 Identities=13% Similarity=0.317 Sum_probs=110.1
Q ss_pred hcCccceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEE
Q psy498 60 LESTNYQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVF 132 (189)
Q Consensus 60 l~~~~~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval 132 (189)
+.+. .|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||+||
T Consensus 9 ~~~~-~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff--~~Lv~~mtSGPvvam 85 (161)
T 3b54_A 9 MSSQ-TERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFF--PKMVSFMKSGPILAT 85 (161)
T ss_dssp -CCC-CCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------C--HHHHHHHHSSCEEEE
T ss_pred cccc-cceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcch--HHHHHHhcCCCEEEE
Confidence 4566 899999999999987 89999999999999999999999999 998 7889999 999999999999999
Q ss_pred EEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 133 QLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 133 ~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
+|+|+|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 86 vleg~naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 136 (161)
T 3b54_A 86 VWEGKDVVRQGRTILGATNPLGS---APGTIRGDFGIDLGRNVCHGSDSVDSAE 136 (161)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHH
T ss_pred EEeccChHHHHHHHhCCCCcccC---CCCChHHHhcCCCCCceEEeCCCHHHHH
Confidence 99999999999999999999987 7999999999999999999999999985
No 23
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=2.5e-41 Score=266.60 Aligned_cols=117 Identities=19% Similarity=0.355 Sum_probs=113.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||++|+|.|+
T Consensus 5 ~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 82 (153)
T 1s57_A 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFF--PNLIEYITSGPVVCMAWEGV 82 (153)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSH--HHHHHHHTSSCEEEEEEEET
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcc--hhHHHHhcCCCEEEEEEecc
Confidence 699999999999988 89999999999999999999999999 988 7889999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||+.||.+..+|++|||||+++|+
T Consensus 83 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 128 (153)
T 1s57_A 83 GVVASARKLIGKTDPLQA---EPGTIRGDLAVQTGRNIVHGSDSPENGK 128 (153)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCCEEECSSHHHHH
T ss_pred cHHHHHHHHhCCCCcccc---CCcchHHHhcCCCcCceEEcCCCHHHHH
Confidence 999999999999999999 6999999999999999999999999885
No 24
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=5.6e-41 Score=267.15 Aligned_cols=121 Identities=17% Similarity=0.346 Sum_probs=113.8
Q ss_pred hcCccceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEE
Q psy498 60 LESTNYQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVF 132 (189)
Q Consensus 60 l~~~~~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval 132 (189)
|.+. .|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||++|
T Consensus 4 l~~~-~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff--~~Lv~~mtSGPvvam 80 (164)
T 2az3_A 4 MTDH-DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFF--DGLVSFITSGPVFAM 80 (164)
T ss_dssp ---C-CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEE
T ss_pred ccCc-cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcch--HHHHHHHcCCCEEEE
Confidence 4555 799999999999988 89999999999999999999999999 998 7889999 999999999999999
Q ss_pred EEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcc--cCC
Q psy498 133 QLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETV--QED 186 (189)
Q Consensus 133 ~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~--~a~ 186 (189)
+|.|+|||+.||+++|||||..| +|+|||+.||.+..+|++|||||++ +|+
T Consensus 81 vleg~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~ 133 (164)
T 2az3_A 81 VWEGADATRQVRQLMGATDAQDA---APGTIRGDYGNDLGHNLIHGSDHEDEGANE 133 (164)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSSCSEEECCTTSTTHHH
T ss_pred EEccccHHHHHHHHhCCCCcccc---CCCcchhhhcccccCceEEecCCcchhhHH
Confidence 99999999999999999999987 7999999999999999999999999 774
No 25
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2.9e-41 Score=269.98 Aligned_cols=127 Identities=17% Similarity=0.371 Sum_probs=115.3
Q ss_pred ChhhhhhhcCccceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccc
Q psy498 53 DRYTKSYLESTNYQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSML 125 (189)
Q Consensus 53 d~~t~~~l~~~~~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mt 125 (189)
+.++.. +... +|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+
T Consensus 11 ~~~~~~-~~~~-~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff--~~Lv~~mt 86 (169)
T 1zs6_A 11 NLFPAA-CTGA-HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFY--GRLVKYMA 86 (169)
T ss_dssp --------CGG-GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHT
T ss_pred cCcchh-hhhh-hccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHhc
Confidence 444332 3455 899999999999987 89999999999999999999999999 998 7899999 99999999
Q ss_pred cCcEEEEEEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 126 NGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 126 sGpvval~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
||||++|+|+|+|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 87 SGPvvamvleg~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~ 144 (169)
T 1zs6_A 87 SGPVVAMVWQGLDVVRTSRALIGATNPADA---PPGTIRGDFCIEVGKNLIHGSDSVESAR 144 (169)
T ss_dssp SSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCSEEECSSHHHHH
T ss_pred CCCEEEEEEecCCchHHHHHHhCCCCcccC---CCCChHHHHcCCCcCceEEecCCHHHHH
Confidence 999999999999999999999999999998 7999999999999999999999999885
No 26
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=4.5e-41 Score=266.83 Aligned_cols=117 Identities=19% Similarity=0.367 Sum_probs=113.3
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||+|.|+
T Consensus 7 ~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff--~~Lv~~mtSGPvvamvleg~ 84 (160)
T 2dxe_A 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFF--KALIDYITKTPVVVMVLEGR 84 (160)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEEE
T ss_pred CCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCch--HHHHHHhcCCCEEEEEEecc
Confidence 699999999999987 89999999999999999999999999 988 8899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCC---cEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGAS---NLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~---N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+ |++|||||+++|+
T Consensus 85 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~ 133 (160)
T 2dxe_A 85 YAVEVVRKMAGATDPKDA---APGTIRGDFGLEVSDAICNVIHASDSKESAE 133 (160)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCSSSCCCSEEECSSHHHHH
T ss_pred CHHHHHHHHhCCCCCCcC---CCCChHHHhcCCcccCcCceEEcCCCHHHHH
Confidence 999999999999999998 799999999999999 9999999999885
No 27
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=4.1e-41 Score=265.91 Aligned_cols=117 Identities=14% Similarity=0.234 Sum_probs=113.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV 137 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~ 137 (189)
+|+|.+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| ++|++||+||||++|+|+|+
T Consensus 9 ~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff--~~Lv~fmtSGPvvamvleg~ 86 (156)
T 3js9_A 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFF--KDLCDFISHGPVFCMIWEGP 86 (156)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHHHCCEEEEEEEET
T ss_pred hhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccH--HHHHHHHhcCCCEEEEEecc
Confidence 799999999999987 89999999999999999999999999 988 7899999 99999999999999999999
Q ss_pred chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
|||+.||+++|||||..| +|+|||++||.+..+|++|||||+++|+
T Consensus 87 naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~ 132 (156)
T 3js9_A 87 EAIKIGRNLVGLTSPVES---AAGTIRGDFGVVKNFNIVHASSSAEDAA 132 (156)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHH
T ss_pred chHHHHHHhcCCCCcccc---CCCCHHHHhCCCCCceeEEcCCCHHHHH
Confidence 999999999999999988 7999999999999999999999999884
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=2.3e-40 Score=268.82 Aligned_cols=117 Identities=19% Similarity=0.340 Sum_probs=112.3
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh---------hhCCCccCCcccccccccCcEEEE
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR---------IMSQQEYTARIPISSMLNGPVIVF 132 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e---------~~~~~~f~~~~lv~~mtsGpvval 132 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++||++ |++ |.++||| +.|++||+||||+||
T Consensus 26 ~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff--~~Lv~~mtSGPvvam 103 (190)
T 4dz6_A 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVW--NSLIKFISNSPVFTF 103 (190)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHH--HHHHHHHTTSEEEEE
T ss_pred hhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHH--HHHHHHhcCCCEEEE
Confidence 799999999999986 89999999999999999999999999 986 4568999 999999999999999
Q ss_pred EEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCC----------CCcEEecCCCcccCC
Q psy498 133 QLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLG----------ASNLYVATEETVQED 186 (189)
Q Consensus 133 ~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~----------~~N~vHgSds~~~a~ 186 (189)
+|+|+|||+.||+|+|||||..| +|+|||++||.+. .+|++|||||+++|+
T Consensus 104 vleG~naV~~~R~l~GpTdP~~A---~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~ 164 (190)
T 4dz6_A 104 VVEGVESIEVVRKLCGATEPKLA---IPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAM 164 (190)
T ss_dssp EEEEETHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHH
T ss_pred EEecCCHHHHHHHHcCCCChhhc---CCCChHHHhcCChhhhccccccccceeEEcCCCHHHHH
Confidence 99999999999999999999998 8999999999999 999999999999885
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=4.4e-38 Score=256.67 Aligned_cols=117 Identities=27% Similarity=0.440 Sum_probs=111.5
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHhhh-------------------------------
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKRIM------------------------------- 110 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e~~------------------------------- 110 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||+++|++ |++|+
T Consensus 15 ~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 94 (195)
T 1xqi_A 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 94 (195)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred hhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhcc
Confidence 699999999999987 89999999999999999999999999 88754
Q ss_pred ------CCCccCCcccccccccCcEEEEEEeecchHHHHHHhhCCCChhhhhhcCCCCcccccccCCCC----------c
Q psy498 111 ------SQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGAS----------N 174 (189)
Q Consensus 111 ------~~~~f~~~~lv~~mtsGpvval~L~g~naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~----------N 174 (189)
+++|| +.|++||+||||++|+|+|+|||+.||+++|||||..| +|+|||+.||.+..+ |
T Consensus 95 ~~~~~~gk~ff--~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A---~pgTIRg~fg~~~~~~~~~~~~~~~N 169 (195)
T 1xqi_A 95 DDPVEVGRIIK--RNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSA---PPGTIRGDYSIDSPDLAAEEGRVVFN 169 (195)
T ss_dssp CCHHHHHHHHH--HHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGS---CTTSHHHHHCCCCHHHHHHTTSCCCC
T ss_pred ccchhcCCcch--HHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcC---CCCchhHhhcCchhhhccccccccce
Confidence 57899 99999999999999999999999999999999999999 799999999999888 9
Q ss_pred EEecCCCcccCC
Q psy498 175 LYVATEETVQED 186 (189)
Q Consensus 175 ~vHgSds~~~a~ 186 (189)
++|||||+++|+
T Consensus 170 ~vHgSDS~esA~ 181 (195)
T 1xqi_A 170 LVHASDSPSEAE 181 (195)
T ss_dssp SEEECSSHHHHH
T ss_pred EEEcCCCHHHHH
Confidence 999999999985
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.93 E-value=1.7e-26 Score=202.90 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=91.3
Q ss_pred ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHhhhCCCccCCcccccccccCcEEEEEEeecchHH
Q psy498 65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQ 141 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e~~~~~~f~~~~lv~~mtsGpvval~L~g~naV~ 141 (189)
.|+||+|||||++++ +|+||++|+++||.|+++||++|+++ |++|+.... ++|++||+|||++||+|+|+|||+
T Consensus 235 ~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~---~~Lv~~mtsGPvva~vleG~~av~ 311 (352)
T 3bh7_B 235 DESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA---PDFLPLLNKGPVIALEFNGDGAVE 311 (352)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG---GGTGGGGGGSCEEEEEEESTTHHH
T ss_pred ccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH---HHHHHHhccCCEEEEEEECcCHHH
Confidence 699999999999998 89999999999999999999999999 999654322 569999999999999999999999
Q ss_pred HHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498 142 KLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED 186 (189)
Q Consensus 142 ~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~ 186 (189)
.||+++|+++| .|++|||||+|+|+
T Consensus 312 ~~R~l~g~t~p--------------------gN~vHgSds~esA~ 336 (352)
T 3bh7_B 312 VCQLIVNEIFN--------------------GTKMFVSESKETAS 336 (352)
T ss_dssp HHHHHHHHHCT--------------------TSCEEECSCHHHHH
T ss_pred HHHHHhcCCCC--------------------CceEEecCCHHHHH
Confidence 99999999985 29999999999885
No 31
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=99.07 E-value=3.2e-11 Score=92.57 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=46.3
Q ss_pred CCCCC------CceeeeccCCCC--------CCcCCeEecceeEEeeeeEEEeecCCccceeeccCChhhhhhhcCc
Q psy498 1 IDVKK------NKIFLHRTHCDE--------ILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLEST 63 (189)
Q Consensus 1 ~d~k~------~r~fLkr~~~~~--------i~~~dl~ig~~v~i~sR~l~i~~~~~~~~~~vdy~d~~t~~~l~~~ 63 (189)
+|+|+ +.+||||+++|. ++.+||+||++|+||||+++| +| +|+|||+.|.+.
T Consensus 53 ~E~~~~NSG~~~g~fLkR~rvpk~~~~~~~~~~~~Dl~VG~~v~i~gR~f~I----------~d-cD~fTr~~l~~~ 118 (133)
T 2z14_A 53 NEPEVKNSGLLQGTSIRRHRITLPPPDEDQFYTVYHFNVGTEVVFYGRTFKI----------YD-CDAFTRNFLRKI 118 (133)
T ss_dssp ECCC-----CCCSSEEEEECCBCSTTCTTSBCCGGGCCTTCEEEETTEEEEE----------EE-ECHHHHHHHHHT
T ss_pred EecCccCCCCcCceEEeeeeCCCCCcccCcccCHHHcccCCEEEEecEEEEE----------Ee-CCHHHHHHHHHc
Confidence 36677 899999999986 899999999999999999999 99 999999987643
No 32
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=43.48 E-value=25 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=34.2
Q ss_pred eEEEEEEeCccccchHHHHHHHHHCCCeEEeEEeeechHH-HHh
Q psy498 66 QCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEE-IKR 108 (189)
Q Consensus 66 e~Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e 108 (189)
...+++++|..+....+|.+.|.+..-.|.++.. |+.+ |++
T Consensus 4 ~~~Ivv~~P~sy~Da~~I~d~Lr~~~~VvvNL~~--ld~~~AqR 45 (87)
T 3p04_A 4 QSTIVPVELHSFEDAQVIGGAFRDGDAVVFDMSL--LSREEARR 45 (87)
T ss_dssp CCSCEEEECSSGGGHHHHHHHHHTTCCEEEECTT--SCHHHHHH
T ss_pred CcEEEEEecCcHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHH
Confidence 4568999999999999999999998888888774 4666 665
No 33
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=21.58 E-value=87 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=23.5
Q ss_pred ceEEEEEEeCccccchHHHHHHHHHCCCeEEe
Q psy498 65 YQCTIAFLRPHANDSKSELFQDLINHGFEFIN 96 (189)
Q Consensus 65 ~e~Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~ 96 (189)
+-.-.|+|+|+ ++.++.+.|.+.||.-..
T Consensus 6 MKlI~AIIrp~---kld~V~~AL~~~G~~~t~ 34 (114)
T 3m05_A 6 TKLVIAIVQDK---DANYLSDQFIDQNVRATK 34 (114)
T ss_dssp EEEEEEEEEHH---HHHHHHHHHHHTTCCEEE
T ss_pred EEEEEEEECHH---HHHHHHHHHHHCCCCEEE
Confidence 45678999998 577899999999999643
Done!