RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy498
(189 letters)
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 41.1 bits (96), Expect = 1e-05
Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 64 NYQCTIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEI---KRIMSQQEYTAR 118
N + T ++P E+ + GF + + + +EE I +
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 119 IPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNL 175
+ M +GPV+ G+N V+ + ++G + ++ P ++R + N+
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNI 115
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 40.8 bits (95), Expect = 2e-05
Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 64 NYQCTIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIM---SQQEYTAR 118
+ + T ++P ++ L G + + + +EE+ + +
Sbjct: 1 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFD 60
Query: 119 IPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLY 176
+S + +GPV G +A ++++ ++G D ++A P ++R Y + NL
Sbjct: 61 GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLI 115
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 37.8 bits (87), Expect = 3e-04
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 121 ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSH 169
+ M +GP +V L+G AV+ ++ +VGP A P ++R YS
Sbjct: 96 VKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAP---PGTIRGDYSI 141
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 36.1 bits (83), Expect = 8e-04
Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 62 STNYQCTIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMS---QQEYT 116
+ ++ T ++P E+ + GF+ + L +V+ +EE+ R ++
Sbjct: 1 TGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPF 60
Query: 117 ARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNL 175
+ M +GPV+ +G++ V+ + ++G + +A P ++R + NL
Sbjct: 61 YGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNL 116
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 27.2 bits (60), Expect = 1.2
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 71 FLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVI 130
F+ S + F D+I FEF + + I +
Sbjct: 137 FVTREFLRSLRKPFSDIIEPKFEFAVKF-------NALELDDSDLALFIAAIIL---CGD 186
Query: 131 VFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHL 170
L V V+ +QD + A +N+P + + + L
Sbjct: 187 RPGLMNVPRVEAIQDTILRALEFHLQANHPDA-QQLFPKL 225
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.5 bits (58), Expect = 1.7
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 85 QDLINHGFEFINLLMVEFNEEIKRI-MSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKL 143
L N G ++ + + + + E + +++ L V ++K
Sbjct: 129 GQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVL-LMSSDR--PGLACVERIEKY 185
Query: 144 QDVVGPADREEALSNYPHSLRARYSHL 170
QD A H + L
Sbjct: 186 QDSFLLAFEHYINYRKHHV-THFWPKL 211
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 26.5 bits (58), Expect = 2.2
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 76 ANDSKSELFQDLINHGFEFINLLMVEFNEEIKRI-MSQQEYTARIPISSMLNGPVIVFQL 134
N + F + F I +F + + + + + + + G L
Sbjct: 134 GNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAI-ICCGDRPG--L 190
Query: 135 RGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHL 170
V ++K+Q+ + R SN+P + L
Sbjct: 191 LNVGHIEKMQEGIVHVLRLHLQSNHPDD-IFLFPKL 225
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 25.9 bits (56), Expect = 2.5
Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 12/98 (12%)
Query: 35 ILKIVDYGDRILKIV--------DYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQD 86
+L+++ D L+ V R E+ + I + + +
Sbjct: 2 VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQ----RI 57
Query: 87 LINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSM 124
++ E + +V N E+ +
Sbjct: 58 IVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 25.8 bits (56), Expect = 3.6
Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 75 HANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQL 134
S +D + + M++F+ +K++ +E + S+ +
Sbjct: 158 WECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGV-- 215
Query: 135 RGVNAVQKLQDVVGPADREEALSNYPHSL-RARYSHL 170
V +LQ+ + N P R + +
Sbjct: 216 LQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKI 252
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 25.4 bits (55), Expect = 4.0
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 59 YLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTAR 118
L + + SK DL N + + + ++E+
Sbjct: 84 SLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK-------SMKLEKEEF--- 133
Query: 119 IPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHL 170
+ + ++ + V AVQKLQDV+ A ++ + R R +
Sbjct: 134 VTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPR-RAGKM 184
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 25.2 bits (54), Expect = 4.4
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 44 RILKIVDYGDRYTKS---YLESTNYQCTI 69
+I +VD G ++T L I
Sbjct: 3 KIY-VVDNGGQWTHREWRVLRELGVDTKI 30
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 24.9 bits (53), Expect = 6.7
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 3/25 (12%)
Query: 48 IVDYGDRYTKS---YLESTNYQCTI 69
I+D G +Y L + I
Sbjct: 5 IMDNGGQYVHRIWRTLRYLGVETKI 29
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 24.9 bits (53), Expect = 6.9
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 43 DRILKIVDYGDRYTKS---YLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLM 99
RIL I+D+G +YT+ + C + A D +D G
Sbjct: 6 HRIL-ILDFGSQYTQLVARRVRELGVYCEL-----WAWDVTEAQIRDFNPSGIILSGGPE 59
Query: 100 VEFNEEIKRIMSQQEYTARIPISSM 124
E R Q + A +P+ +
Sbjct: 60 STTEENSPRAP-QYVFEAGVPVFGV 83
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 24.3 bits (52), Expect = 9.9
Identities = 9/96 (9%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 76 ANDSKSELFQDLINHGFEFINLLMVEFNEEIKRI-MSQQEYTARIPISSMLNGPVIVFQL 134
+ + ++ E + ++KR+ + ++E + + +++ + +
Sbjct: 130 NQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELS---CLKAIILYNPDIRGI 186
Query: 135 RGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHL 170
+ ++ ++ V E +P R++ L
Sbjct: 187 KSRAEIEMCREKVYACLDEHCRLEHPGD-DGRFAQL 221
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.392
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,857
Number of extensions: 31329
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 23
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)