Query psy4980
Match_columns 192
No_of_seqs 157 out of 1280
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:45:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 98.6 3.1E-08 1.1E-12 80.6 5.1 59 111-188 97-155 (230)
2 1d2t_A Acid phosphatase; all a 98.5 6.7E-08 2.3E-12 78.7 4.1 58 111-187 109-166 (231)
3 1qi9_A Protein (vanadium bromo 97.1 0.00015 5.1E-09 65.9 1.9 26 162-187 409-434 (556)
4 3bb0_A Vanadium chloroperoxida 96.8 0.0025 8.5E-08 58.6 7.2 25 162-186 395-419 (609)
5 1up8_A Vanadium-dependent brom 93.3 0.045 1.5E-06 50.0 3.1 27 163-189 479-505 (598)
6 3arc_E Cytochrome B559 subunit 14.9 2.7E+02 0.0093 18.3 4.6 18 111-128 37-54 (83)
7 3arc_Y Protein YCF12; PSII, me 14.4 1.7E+02 0.0057 15.6 2.8 17 42-58 7-23 (29)
8 1jb0_I Photosystem 1 reaction 10.7 2.6E+02 0.0089 15.8 3.2 27 34-60 6-32 (38)
9 2lnl_A C-X-C chemokine recepto 10.3 5.5E+02 0.019 19.3 8.0 19 43-61 178-196 (296)
10 3bz1_y Protein YCF12; electron 10.0 2.6E+02 0.0088 16.5 2.8 18 41-58 23-40 (46)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=98.61 E-value=3.1e-08 Score=80.62 Aligned_cols=59 Identities=24% Similarity=0.156 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCCCccccccCCCCCccccccccceeeeeecCCChhhhhccCccCCChhHHHHHHHHHHHHHHHhh
Q psy4980 111 ITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYLHR 188 (192)
Q Consensus 111 ~~t~~~K~~vGr~RP~fl~~C~p~~~~~~~~~~~~~~~~~~Ct~~~~~~~~~~~~SFPSGHss~s~~~~~fl~lyl~~ 188 (192)
+++.++|..++|+||+.... + ..|... .....++..||||||++.+++.++++++++..
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~---~---------------~~~~~~-~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~ 155 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFN---H---------------STCRPE-DENTLRKDGSYPSGHDAYSTLLALVLSQARPE 155 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTT---C---------------CCSCGG-GHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhCCCCcCccCC---C---------------CeeccC-cccCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999986431 1 113211 12235677999999999999998888776543
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=98.50 E-value=6.7e-08 Score=78.74 Aligned_cols=58 Identities=28% Similarity=0.260 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCCCCccccccCCCCCccccccccceeeeeecCCChhhhhccCccCCChhHHHHHHHHHHHHHHHh
Q psy4980 111 ITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYLH 187 (192)
Q Consensus 111 ~~t~~~K~~vGr~RP~fl~~C~p~~~~~~~~~~~~~~~~~~Ct~~~~~~~~~~~~SFPSGHss~s~~~~~fl~lyl~ 187 (192)
+++..+|..++|+||+.... +. .|+.. .....+...|||||||+.+++.++++++++.
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~---~~---------------~~~p~-~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~ 166 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYG---VS---------------TCNTT-EQDKLSKNGSYPSGHTSIGWATALVLAEINP 166 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHT---CC---------------CSCC---CCCCCSSCCSSCHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhCCCCcCccCC---CC---------------ceecC-CcCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 67889999999999986541 10 11100 0001356799999999999999888877654
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=97.10 E-value=0.00015 Score=65.94 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.7
Q ss_pred ccCccCCChhHHHHHHHHHHHHHHHh
Q psy4980 162 SARASFPSAHSAVAFYAALYTIIYLH 187 (192)
Q Consensus 162 ~~~~SFPSGHss~s~~~~~fl~lyl~ 187 (192)
....|||||||+.+++.++.+..++.
T Consensus 409 p~~~SFPSGHAt~A~A~A~vL~~l~g 434 (556)
T 1qi9_A 409 PTHPSYPSGHATQNGAFATVLKALIG 434 (556)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999987773
No 4
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=96.79 E-value=0.0025 Score=58.59 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=23.1
Q ss_pred ccCccCCChhHHHHHHHHHHHHHHH
Q psy4980 162 SARASFPSAHSAVAFYAALYTIIYL 186 (192)
Q Consensus 162 ~~~~SFPSGHss~s~~~~~fl~lyl 186 (192)
..+-|||||||+.+++++..|..++
T Consensus 395 P~~pSYPSGHAt~s~A~A~vL~~~f 419 (609)
T 3bb0_A 395 PPFPAYPSGHATFGGAVFQMVRRYY 419 (609)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999988
No 5
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=93.29 E-value=0.045 Score=50.04 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=23.4
Q ss_pred cCccCCChhHHHHHHHHHHHHHHHhhh
Q psy4980 163 ARASFPSAHSAVAFYAALYTIIYLHRV 189 (192)
Q Consensus 163 ~~~SFPSGHss~s~~~~~fl~lyl~~~ 189 (192)
...|||||||+.+++.++.|..++...
T Consensus 479 ~~pSYPSGHAt~S~A~A~vL~~lf~~~ 505 (598)
T 1up8_A 479 FHPSYGSGHAVVAGACVTILKAFFDSG 505 (598)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHHBTTT
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999999998887554
No 6
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=14.88 E-value=2.7e+02 Score=18.33 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCCCCcc
Q psy4980 111 ITVHGAKFLCGRLRPHFF 128 (192)
Q Consensus 111 ~~t~~~K~~vGr~RP~fl 128 (192)
.-|.+.-...|-||||-+
T Consensus 37 VstGLaYdvFGtPrpneY 54 (83)
T 3arc_E 37 VSTGLAYDVFGTPRPDSY 54 (83)
T ss_dssp HHTSHHHHHHTCCCTTSS
T ss_pred hccCcceeccCCCCcccc
Confidence 445577788999999843
No 7
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=14.41 E-value=1.7e+02 Score=15.58 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=10.8
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy4980 42 LLACISLSLPNIIIFVC 58 (192)
Q Consensus 42 ~l~~i~~~iP~~~i~l~ 58 (192)
.+..+..+.|++++++.
T Consensus 7 ~l~lIv~aGP~VI~lLa 23 (29)
T 3arc_Y 7 MIAMIGIAGPMIIFLLA 23 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChheeehh
Confidence 45566677888765543
No 8
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=10.74 E-value=2.6e+02 Score=15.77 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=19.5
Q ss_pred CCCCcchhHHHHHHhHHHHHHHHHHHH
Q psy4980 34 KESTVSTGLLACISLSLPNIIIFVCEL 60 (192)
Q Consensus 34 ~~~tVp~~~l~~i~~~iP~~~i~l~~~ 60 (192)
..+-.|....-+++...|.+.+.+..+
T Consensus 6 aa~~LPsI~VPlVglvfPai~Mallf~ 32 (38)
T 1jb0_I 6 AASFLPWIFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp TTTTHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhhCChhhHhHHHHHHHHHHHHHHHH
Confidence 345577778888888889887766543
No 9
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=10.29 E-value=5.5e+02 Score=19.28 Aligned_cols=19 Identities=11% Similarity=0.294 Sum_probs=12.0
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q psy4980 43 LACISLSLPNIIIFVCELC 61 (192)
Q Consensus 43 l~~i~~~iP~~~i~l~~~~ 61 (192)
...+.+.+|..++......
T Consensus 178 ~~~~~~~~p~~i~~~~y~~ 196 (296)
T 2lnl_A 178 PHTFGFIVPLFVMLFCYGF 196 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455667888877665543
No 10
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=10.01 E-value=2.6e+02 Score=16.47 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=11.4
Q ss_pred hHHHHHHhHHHHHHHHHH
Q psy4980 41 GLLACISLSLPNIIIFVC 58 (192)
Q Consensus 41 ~~l~~i~~~iP~~~i~l~ 58 (192)
..+..+..+.|++++++.
T Consensus 23 ~~LalIv~aGPlVI~LLa 40 (46)
T 3bz1_y 23 TMIAMIGIAGPMIIFLLA 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHhhhHH
Confidence 345566777888766543
Done!