Query psy4980
Match_columns 192
No_of_seqs 157 out of 1280
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 22:46:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d2ta_ a.111.1.1 (A:) Bacteri 98.0 6.2E-07 4.5E-11 71.0 1.8 58 111-187 103-160 (224)
2 d1vnsa_ a.111.1.3 (A:) Chlorop 71.1 6.8 0.00049 33.4 8.2 78 103-188 334-418 (574)
3 d1dx5i2 g.3.11.1 (I:388-422) T 33.5 9.7 0.00071 19.8 1.5 19 130-149 11-29 (35)
4 d1qi9a_ a.111.1.2 (A:) Haloper 27.3 18 0.0013 30.4 3.1 25 162-186 408-432 (555)
5 d1qhba_ a.111.1.2 (A:) Haloper 19.8 27 0.002 29.6 2.7 25 162-186 475-499 (595)
6 d2axte1 f.23.38.1 (E:3-84) Cyt 18.7 1E+02 0.0073 18.8 4.7 18 111-128 36-53 (82)
7 d1njqa_ g.37.1.3 (A:) SUPERMAN 12.5 27 0.0019 18.5 0.5 11 163-173 11-21 (37)
8 d1v54d_ f.23.1.1 (D:) Mitochon 9.8 1.9E+02 0.014 19.5 4.5 31 99-129 79-109 (144)
9 d1v54i_ f.23.3.1 (I:) Mitochon 6.2 1E+02 0.0075 18.5 1.4 21 106-126 25-45 (73)
10 d1c4ea_ g.3.4.1 (A:) Gurmarin, 5.8 85 0.0062 15.6 0.7 11 124-134 11-21 (35)
No 1
>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
Probab=98.03 E-value=6.2e-07 Score=71.04 Aligned_cols=58 Identities=28% Similarity=0.276 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCCccccccCCCCCccccccccceeeeeecCCChhhhhccCccCCChhHHHHHHHHHHHHHHHh
Q psy4980 111 ITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYLH 187 (192)
Q Consensus 111 ~~t~~~K~~vGr~RP~fl~~C~p~~~~~~~~~~~~~~~~~~Ct~~~~~~~~~~~~SFPSGHss~s~~~~~fl~lyl~ 187 (192)
+.+...|..++|+||.... +. ..|... .........||||||++.+++.+++++....
T Consensus 103 ~a~~~~K~~~~R~RP~~~~---~~---------------~~~~~~-~~~~~~~~~SfPSGHa~~a~~~a~~la~~~p 160 (224)
T d1d2ta_ 103 LATRSAKDHYMRIRPFAFY---GV---------------STCNTT-EQDKLSKNGSYPSGHTSIGWATALVLAEINP 160 (224)
T ss_dssp TTTHHHHHHHCCCCHHHHH---TC---------------CCSCC---CCCCCSSCCSSCHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHcCCChhhhc---Cc---------------CCCCcc-ccccCCCCCCcCchhHHHHHHHHHHHHHHhH
Confidence 4567799999999995432 11 112111 1112244579999999999998888876544
No 2
>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis [TaxId: 38902]}
Probab=71.06 E-value=6.8 Score=33.40 Aligned_cols=78 Identities=13% Similarity=-0.024 Sum_probs=46.1
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCCCcccccc-----CCCCCccccccccceeeeeecCCChhhhhccCccCCChhHHHH
Q psy4980 103 WLGIGF--AQITVHGAKFLCGRLRPHFFEICR-----PNIDCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVA 175 (192)
Q Consensus 103 ~~~~~~--~~~~t~~~K~~vGr~RP~fl~~C~-----p~~~~~~~~~~~~~~~~~~Ct~~~~~~~~~~~~SFPSGHss~s 175 (192)
++++++ ..+.+-=.|...-..||--.-|-. .+..|....- .=.+.+.......+=+||||||++|
T Consensus 334 ~l~~A~~DA~IA~Wd~Ky~y~~~RPvTaIR~~~~~~~~d~~W~p~~~--------~~~~~~~~~~TPpFPeY~SGHStfS 405 (574)
T d1vnsa_ 334 LVDVACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGA--------PATNTNDIPFKPPFPAYPSGHATFG 405 (574)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCB--------CCTTSSCCCBCCSSCCSSCHHHHHH
T ss_pred HHHHHHhhhHHhhhhccceeeeechhHHHHhcccccCCCCcccccCC--------cccccCCCCCCCCCCCCCchhHHHH
Confidence 344444 335566799999999995444321 1111211100 0001111122356889999999999
Q ss_pred HHHHHHHHHHHhh
Q psy4980 176 FYAALYTIIYLHR 188 (192)
Q Consensus 176 ~~~~~fl~lyl~~ 188 (192)
.+++.-|..|+-+
T Consensus 406 ~AaA~VL~~~fG~ 418 (574)
T d1vnsa_ 406 GAVFQMVRRYYNG 418 (574)
T ss_dssp HHHHHHHHHHHBT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988754
No 3
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.47 E-value=9.7 Score=19.80 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=11.3
Q ss_pred cccCCCCCccccccccceee
Q psy4980 130 ICRPNIDCSLEQYRYAFVTN 149 (192)
Q Consensus 130 ~C~p~~~~~~~~~~~~~~~~ 149 (192)
.|+|+. .+.-+|.++|+-+
T Consensus 11 dCdP~~-p~~C~CPeGyIld 29 (35)
T d1dx5i2 11 DCDPNT-QASCECPEGYILD 29 (35)
T ss_dssp EECTTS-TTCEECCTTEEEE
T ss_pred ccCCCC-CCcccCCCceEec
Confidence 477765 3445566677654
No 4
>d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Ascophyllum nodosum [TaxId: 52969]}
Probab=27.35 E-value=18 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=21.0
Q ss_pred ccCccCCChhHHHHHHHHHHHHHHH
Q psy4980 162 SARASFPSAHSAVAFYAALYTIIYL 186 (192)
Q Consensus 162 ~~~~SFPSGHss~s~~~~~fl~lyl 186 (192)
..+-|||+||++.+-++.+.|=.++
T Consensus 408 PtHPsY~AGHAtvAGA~vTiLKAff 432 (555)
T d1qi9a_ 408 PTHPSYPSGHATQNGAFATVLKALI 432 (555)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccchHHHHhHHHHHHHHHh
Confidence 3568999999999999988887665
No 5
>d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae (Corallina officinalis) [TaxId: 35170]}
Probab=19.76 E-value=27 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.8
Q ss_pred ccCccCCChhHHHHHHHHHHHHHHH
Q psy4980 162 SARASFPSAHSAVAFYAALYTIIYL 186 (192)
Q Consensus 162 ~~~~SFPSGHss~s~~~~~fl~lyl 186 (192)
..+-|||+||+..+-++.+.|=.++
T Consensus 475 PtHPsY~AGHAtvAGA~vTiLKAfF 499 (595)
T d1qhba_ 475 PFHPSYGSGHAVVAGACVTILKAFF 499 (595)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHB
T ss_pred CCCCCccchHHHHHHHHHHHHHHHH
Confidence 3568999999999998888877665
No 6
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.66 E-value=1e+02 Score=18.81 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCCCCcc
Q psy4980 111 ITVHGAKFLCGRLRPHFF 128 (192)
Q Consensus 111 ~~t~~~K~~vGr~RP~fl 128 (192)
.-|.+.-...|-||||-+
T Consensus 36 VstGLAYdvFGtPrPneY 53 (82)
T d2axte1 36 VSTGLAYDVFGTPRPDSY 53 (82)
T ss_dssp HHTTHHHHHTTCCCTTCS
T ss_pred eecccchhhcCCCCcccc
Confidence 445577788999999853
No 7
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.55 E-value=27 Score=18.47 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=8.6
Q ss_pred cCccCCChhHH
Q psy4980 163 ARASFPSAHSA 173 (192)
Q Consensus 163 ~~~SFPSGHss 173 (192)
-.++||||.|-
T Consensus 11 C~k~F~s~qAL 21 (37)
T d1njqa_ 11 CKREFRSAQAL 21 (37)
T ss_dssp TCCEESSHHHH
T ss_pred CCCccCCcccc
Confidence 35899999874
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.80 E-value=1.9e+02 Score=19.46 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q psy4980 99 ISLFWLGIGFAQITVHGAKFLCGRLRPHFFE 129 (192)
Q Consensus 99 ~~~~~~~~~~~~~~t~~~K~~vGr~RP~fl~ 129 (192)
+++-+++++++.++.-..+..+.-+.|+.++
T Consensus 79 ~g~~~~~i~~s~~i~~~~r~~v~p~~P~T~~ 109 (144)
T d1v54d_ 79 VGAAMFFIGFTALLLIWEKHYVYGPIPHTFE 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 3445567777778888899999888998765
No 9
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.22 E-value=1e+02 Score=18.45 Aligned_cols=21 Identities=14% Similarity=-0.072 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q psy4980 106 IGFAQITVHGAKFLCGRLRPH 126 (192)
Q Consensus 106 ~~~~~~~t~~~K~~vGr~RP~ 126 (192)
+.++..++...|..+++||=.
T Consensus 25 ~~lsl~~a~~~Kf~v~eprKk 45 (73)
T d1v54i_ 25 FMVSLGFATFYKFAVAEKRKK 45 (73)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHhHH
Confidence 344455666899999988864
No 10
>d1c4ea_ g.3.4.1 (A:) Gurmarin, a sweet taste-suppressing polypeptide {Gymnema sylvestre [TaxId: 4068]}
Probab=5.82 E-value=85 Score=15.56 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=8.4
Q ss_pred CCCccccccCC
Q psy4980 124 RPHFFEICRPN 134 (192)
Q Consensus 124 RP~fl~~C~p~ 134 (192)
-|++++-|.|-
T Consensus 11 ipyyldccepl 21 (35)
T d1c4ea_ 11 IPYYLDCCEPL 21 (35)
T ss_dssp CTTTCCCSSSC
T ss_pred cchhhcccChh
Confidence 47888888875
Done!