RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4980
(192 letters)
>gnl|CDD|239479 cd03384, PAP2_wunen, PAP2, wunen subfamily. Most likely a family of
membrane associated phosphatidic acid phosphatases.
Wunen is a drosophila protein expressed in the central
nervous system, which provides repellent activity
towards primordial germ cells (PGCs), controls the
survival of PGCs and is essential in the migration
process of these cells towards the somatic gonadal
precursors.
Length = 150
Score = 81.1 bits (201), Expect = 7e-20
Identities = 33/91 (36%), Positives = 52/91 (57%)
Query: 102 FWLGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIR 161
F G+ Q+ K++ GRLRPHF ++C+PN + ++ + TC D +LIR
Sbjct: 9 FLFGLFATQLLTDLGKYVTGRLRPHFLDVCKPNYTDLTCSLDHQYIADCTCCTGDPDLIR 68
Query: 162 SARASFPSAHSAVAFYAALYTIIYLHRVRKT 192
AR SFPS H++++ YAA++ +YL K
Sbjct: 69 EARLSFPSGHASLSMYAAVFLALYLQARLKL 99
>gnl|CDD|239484 cd03390, PAP2_containing_1_like, PAP2, subfamily similar to human
phosphatidic_acid_phosphatase_type_2_domain_containing_1
. Most likely membrane-associated phosphatidic acid
phosphatases. Plant members of this group are
constitutively expressed in many tissues and exhibit
both diacylglycerol pyrophosphate phosphatase activity
as well as phosphatidate (PA) phosphatase activity, they
may have a more generic housekeeping role in lipid
metabolism.
Length = 193
Score = 64.5 bits (158), Expect = 3e-13
Identities = 42/162 (25%), Positives = 60/162 (37%), Gaps = 33/162 (20%)
Query: 27 TSIRYPFKES-TVSTGLLACISLSLPNIIIFVCELCKILYGQNTSKVASTKAGPNKPPGR 85
SI YPF ES TV T LL IS+ +P ++I +
Sbjct: 1 PSISYPFAESETVPTWLLVIISVGIPLLVIILI--------------------------- 33
Query: 86 YVFLILLIKSFGTISL-FWLGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRY 144
+F + T L L + + + K GR RP F C P+ +
Sbjct: 34 SLFFRRSLWDLHTSLLGLLLSVSLNGVITNVLKNYAGRPRPDFLARCFPDGGTPSDTL-- 91
Query: 145 AFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYL 186
V C D +++ R SFPS HS+ AF + +YL
Sbjct: 92 --VGIDICCTGDPGVLKEGRKSFPSGHSSFAFAGLGFLSLYL 131
>gnl|CDD|238813 cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine
phosphatases and vanadium haloperoxidases, includes type
2 phosphatidic acid phosphatase or lipid phosphate
phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid
phosphatase, vanadium chloroperoxidases, vanadium
bromoperoxidases, and several other mostly
uncharacterized subfamilies. Several members of this
superfamily have been predicted to be transmembrane
proteins.
Length = 122
Score = 41.3 bits (97), Expect = 4e-05
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 101 LFWLGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLI 160
L L + + K+L GR RP+F C P+ D L+
Sbjct: 7 LLLLALLAGLLLTGVLKYLFGRPRPYFLLRCGPD--------------------GDPLLL 46
Query: 161 RSARASFPSAHSAVAFYAALYTIIYLHR 188
SFPS H+A AF AL+ + L R
Sbjct: 47 TEGGYSFPSGHAAFAFALALFLALLLPR 74
>gnl|CDD|214471 smart00014, acidPPc, Acid phosphatase homologues.
Length = 116
Score = 40.0 bits (94), Expect = 1e-04
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 18/83 (21%)
Query: 104 LGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSA 163
L +Q+ K GR RP F I C + L A
Sbjct: 2 LLAVVSQLFNGVIKNYFGRPRPFFLSIGDA------------------CCTPNFLLTLEA 43
Query: 164 RASFPSAHSAVAFYAALYTIIYL 186
SFPS H+A AF AL+ ++YL
Sbjct: 44 GYSFPSGHTAFAFAFALFLLLYL 66
>gnl|CDD|216577 pfam01569, PAP2, PAP2 superfamily. This family includes the enzyme
type 2 phosphatidic acid phosphatase (PAP2),
Glucose-6-phosphatase EC:3.1.3.9,
Phosphatidylglycerophosphatase B EC:3.1.3.27 and
bacterial acid phosphatase EC:3.1.3.2. The family also
includes a variety of haloperoxidases that function by
oxidising halides in the presence of hydrogen peroxide
to form the corresponding hypohalous acids.
Length = 123
Score = 37.5 bits (87), Expect = 9e-04
Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 23/89 (25%)
Query: 104 LGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSA 163
L + A + K L GR RP P +
Sbjct: 7 LALLLALLLTVILKLLFGRPRPDVILETGPLLPQLPGYD--------------------- 45
Query: 164 RASFPSAHSAVAFYAALYTIIYLHRVRKT 192
SFPS H+A AF AL+ + L R R
Sbjct: 46 --SFPSGHAATAFALALFLALLLKRRRPK 72
>gnl|CDD|178317 PLN02715, PLN02715, lipid phosphate phosphatase.
Length = 327
Score = 36.6 bits (84), Expect = 0.005
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 37/162 (22%)
Query: 27 TSIRYPFKESTVSTGLLACISLSLPNIIIFVCELCK--ILYGQNTSKVASTKAGPNKPPG 84
T ++YPFK++TV + ++ LP II+FVC K +Y + S +
Sbjct: 80 TDLKYPFKDNTVPIWSVPVYAVLLP-IILFVCFYLKRRCVYDLHHSILG----------- 127
Query: 85 RYVFLILLIKSFGTISLFWLGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRY 144
+ +LI T S+ K GR RP+F+ C P+ + Y
Sbjct: 128 --LLFAVLITGVITDSI---------------KVATGRPRPNFYWRCFPD-----GKELY 165
Query: 145 AFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYL 186
+ C G ++ SFPS H++ +F + +YL
Sbjct: 166 DALGGVICHGKAAE-VKEGHKSFPSGHTSWSFAGLTFLSLYL 206
>gnl|CDD|239489 cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 177
Score = 34.9 bits (81), Expect = 0.010
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 87 VFLILLIKSFGTISLFWLGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAF 146
+ L +L + I L L + + A L RP +L+ R
Sbjct: 42 LALFILFRKGP-IGLLILLLVLLAVGF--ADQLASGFLKPLVARLRPCN--ALDGVRLVV 96
Query: 147 VTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYLHR 188
+ + + SF S+H+A +F AL+ ++ R
Sbjct: 97 LGD-----------QGGSYSFASSHAANSFALALFIWLFFRR 127
>gnl|CDD|178332 PLN02731, PLN02731, Putative lipid phosphate phosphatase.
Length = 333
Score = 35.0 bits (80), Expect = 0.015
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 121 GRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAAL 180
GR RP FF C P+ + Y + + C G D ++IR SFPS H++ +F
Sbjct: 141 GRPRPDFFWRCFPD-----GKALYDSLGDVICHG-DKSVIREGHKSFPSGHTSWSFSGLG 194
Query: 181 YTIIYL 186
+ +YL
Sbjct: 195 FLSLYL 200
>gnl|CDD|215139 PLN02250, PLN02250, lipid phosphate phosphatase.
Length = 314
Score = 33.0 bits (75), Expect = 0.078
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 121 GRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAAL 180
GR RP FF C P+ + + T+ C G ++I+ SFPS H++ +F
Sbjct: 122 GRPRPDFFWRCFPD----GKGVFHPVTTDVLCTG-AKSVIKEGHKSFPSGHTSWSFAGLG 176
Query: 181 YTIIYL 186
+ +YL
Sbjct: 177 FLSLYL 182
>gnl|CDD|239492 cd03398, PAP2_haloperoxidase, PAP2, haloperoxidase_like subfamily.
Haloperoxidases catalyze the oxidation of halides such
as bromide or chloride by hydrogen peroxide, which
results in subsequent halogenation of organic
substrates, or halide-assisted disproportionation of
hydrogen peroxide forming dioxygen. They are likely to
participate in the biosynthesis of halogenated natural
products, such as volatile halogenated hydrocarbons,
chiral halogenated terpenes, acetogenins and indoles.
Length = 232
Score = 30.9 bits (70), Expect = 0.29
Identities = 23/114 (20%), Positives = 33/114 (28%), Gaps = 28/114 (24%)
Query: 80 NKPPGRYVFLILLIKSFGTISLFW---------LGIGFAQITVHGAKFLCGRLRPHFFEI 130
PPG + + ++ + +SLF + A I AK+ R RP
Sbjct: 60 PTPPGHWNQIARILAARPGLSLFRTARLFAAVNAAMTDAGIAAWDAKYHYRRWRP----- 114
Query: 131 CRPNIDCSLEQY-RYAFVT--NYTCLGTDLN--LIRSARASFPSAHSAVAFYAA 179
R A T S+PS H+ A AA
Sbjct: 115 ---------VTAIRLADTDGNPATEADPYWLPLAGTPPHPSYPSGHATFAGAAA 159
>gnl|CDD|239488 cd03394, PAP2_like_5, PAP2_like_5 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 106
Score = 29.2 bits (66), Expect = 0.50
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 32/75 (42%)
Query: 105 GIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSAR 164
G KF GR RP D S YR
Sbjct: 11 AAALTAAVTEGLKFAVGRARP----------DGSNNGYR--------------------- 39
Query: 165 ASFPSAHSAVAFYAA 179
SFPS H+A AF AA
Sbjct: 40 -SFPSGHTASAFAAA 53
>gnl|CDD|239483 cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A
1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE
from Francisella novicida selectively dephosphorylates
lipid A at the 1-position. Lipid A is the
membrane-anchor component of lipopolysaccharides (LPS),
the major constituents of the outer membrane in many
gram-negative bacteria.
Length = 186
Score = 29.6 bits (67), Expect = 0.64
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 101 LFWLGIGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLI 160
+ + + I V+ KF+ GR RP + Y F D
Sbjct: 73 FLFATVALSGILVNLLKFIIGRARPKLL----------FDDGLYGF---------DPFHA 113
Query: 161 RSARASFPSAHSAVAFYAA 179
A SFPS HSA A AA
Sbjct: 114 DYAFTSFPSGHSATAGAAA 132
>gnl|CDD|239475 cd03380, PAP2_like_1, PAP2_like_1 proteins, a sub-family of PAP2,
containing bacterial acid phosphatase, vanadium
chloroperoxidases and vanadium bromoperoxidases.
Length = 209
Score = 28.6 bits (64), Expect = 1.7
Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 27/119 (22%)
Query: 71 KVASTKAGPNKPPGRYVFLILLIKSFGTISLFWLG---------IGFAQITVHGAKFLCG 121
+A+ A PP Y + +S + A I AK+
Sbjct: 58 ALAAFDADGGDPPPHYANAFSIALGTPGLSEERTPRLYALLARALTDAGIATWDAKYHYN 117
Query: 122 RLRPHFFEICRPNIDCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAAL 180
R RP + C+ E+ S+PS H+ AAL
Sbjct: 118 RPRPFVAIRLQWLPICTPEEGTPKH------------------PSYPSGHATFGGAAAL 158
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 29.1 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 103 WLGIGFAQITVHGAK-FLCGRLRPHFFEICRPNIDCSLEQY-RYAFVTNY 150
W G G I + K FL H +E+C P+ + +LE + R AF N
Sbjct: 320 WFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS 369
>gnl|CDD|239486 cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 182
Score = 28.0 bits (63), Expect = 2.4
Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 32/109 (29%)
Query: 87 VFLILLIKSFGTISLFWLG-IGFAQITVHGAKFLCGRLRPHFFEICRPNIDCSLEQYRYA 145
+ L+LL+K +LF L + K L R RP +
Sbjct: 51 LALLLLLKRRRRAALFLLLALLGGGALNTLLKLLVQRPRPPLHLL--------------V 96
Query: 146 FVTNYTCLGTDLNLIRSARASFPSAHS--AVAFYAALYTIIYLHRVRKT 192
Y SFPS H+ A Y L ++ R+
Sbjct: 97 PEGGY---------------SFPSGHAMGATVLYGFLAYLLARRLPRRR 130
>gnl|CDD|214566 smart00216, VWD, von Willebrand factor (vWF) type D domain. Von
Willebrand factor contains several type D domains: D1
and D2 are present within the N-terminal propeptide
whereas the remaining D domains are required for
multimerisation.
Length = 163
Score = 27.8 bits (62), Expect = 2.5
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 85 RYVFLILLIKSFGTISLFWLGIGFAQITVHGAKF-----LCGR 122
+++I S G I + + G+ + + LCG
Sbjct: 107 SSGGYLVVITSLGLIQVTFDGLTLLSVQLPSKYRGKTCGLCGN 149
>gnl|CDD|222857 PHA02531, 20, portal vertex protein; Provisional.
Length = 514
Score = 27.7 bits (62), Expect = 4.1
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 140 EQYRYAFVTNYTCLGTDL----NLIRSARASFPSAHSAVAFYAALYTIIYLHRVRK 191
E + Y + + I+ R + AHS + Y I YLHR K
Sbjct: 201 EYFIYNPGHDSYYYNGQVYSANTKIKIPRDAIVYAHSGLMDCDGKYIIGYLHRAIK 256
>gnl|CDD|206202 pfam14032, PknH_C, PknH-like extracellular domain. This domain is
functionally uncharacterized. It is found as the
periplasmic domain of the bacterial protein kinase PknH.
The domain is also found in isolation in numerous
proteins, for example the lipoproteins lpqQ, lprH, lppH
and lpqA from M. tuberculosis. This family of proteins
is found in bacteria. Proteins in this family are
typically between 214 and 268 amino acids in length.
There are two completely conserved C residues that are
likely to form a disulphide bond. A second pair of
cysteines are less well conserved probably form a second
disulphide bond. It seems likely that this domain
functions to bind some as yet unknown ligand.
Length = 189
Score = 27.0 bits (60), Expect = 6.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 165 ASFPSAHSAVAFYAAL 180
FPSA +A AF+A+L
Sbjct: 88 VVFPSADAAQAFFASL 103
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase. The set of
proteins recognized by This model includes a closely
related pair from Bacillus subtilis, one of which is
uncharacterized but included as a member of the
orthologous set [Central intermediary metabolism, Amino
sugars].
Length = 259
Score = 26.7 bits (59), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 92 LIKSFGTISLFWLGIG 107
I+S+G I LF GIG
Sbjct: 124 KIRSYGGIDLFMGGIG 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.142 0.446
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,579,313
Number of extensions: 852948
Number of successful extensions: 1033
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 41
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.4 bits)