RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4980
         (192 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 65/203 (32%)

Query: 29  IRYPFKESTVSTGLLACISLSLPNIIIFVCEL------CKILYGQNTSKVASTKAGPNKP 82
           +  P   +T     L  I +S P  +I V +L       K+L G    ++ S   G    
Sbjct: 219 LENP--SNTPDKDYLLSIPISCP--LIGVIQLAHYVVTAKLL-GFTPGELRSYLKGAT-- 271

Query: 83  PGRYVFLI--LLI------KSFGTIS------LFWLGIGFAQITVHGAKFLCGRLRPHFF 128
            G    L+  + I      +SF          LF++G+           +    L P   
Sbjct: 272 -GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-CYEA-----YPNTSLPPSIL 324

Query: 129 EICRPN-----------IDCSLEQ-YRYAFVTNYTCLGTD----LNLIRSAR----ASFP 168
           E    N            + + EQ   Y   TN + L       ++L+  A+    +  P
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPP 383

Query: 169 SAHSAVAFYAALYTI-IYLHRVR 190
                     +LY + + L + +
Sbjct: 384 ---------QSLYGLNLTLRKAK 397


>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A
           bacterial non-specific acid phosphatase; 2.23A
           {Salmonella typhimurium} PDB: 2a96_A 2akc_A
          Length = 230

 Score = 30.0 bits (67), Expect = 0.40
 Identities = 7/27 (25%), Positives = 9/27 (33%)

Query: 162 SARASFPSAHSAVAFYAALYTIIYLHR 188
               S+PS H A +   AL        
Sbjct: 129 RKDGSYPSGHDAYSTLLALVLSQARPE 155


>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae}
           SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
          Length = 231

 Score = 30.0 bits (67), Expect = 0.42
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 162 SARASFPSAHSAVAFYAALY 181
           S   S+PS H+++ +  AL 
Sbjct: 141 SKNGSYPSGHTSIGWATALV 160


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 1.3
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 10  LLAVFGQPSKQGFFCSDTS-----------IRYPFKESTVSTG---LLACISLSLPNII- 54
           +L+VF       F C D             I +        +G   L   +      ++ 
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 55  IFVCELCKILYGQNTSKVASTKAGPNKPPGRYV 87
            FV E+ +I Y    S + + +  P+     Y+
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113


>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural
           genomics, riken STR genomics/proteomics initiative,
           RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP:
           c.26.1.4 PDB: 1ufv_A
          Length = 276

 Score = 26.3 bits (59), Expect = 5.7
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 14/43 (32%)

Query: 107 GFA-QITVHG--AKFLCGRLRP-HF----------FEICRPNI 135
           GFA ++ V G       G +RP HF          F + +P  
Sbjct: 97  GFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQR 139


>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for
           structural genomics of infec diseases, csgid; HET: PAF;
           1.58A {Yersinia pestis} PDB: 3q10_A* 3mue_A 1iho_A
           3guz_A*
          Length = 287

 Score = 26.0 bits (58), Expect = 7.5
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 14/41 (34%)

Query: 109 AQITVHG---AKFLCGRLRP-HF----------FEICRPNI 135
            Q  V     +  L G  RP HF          F + +P++
Sbjct: 108 KQTYVDVPALSTILEGASRPGHFRGVSTIVSKLFNLIQPDV 148


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.142    0.446 

Gapped
Lambda     K      H
   0.267   0.0814    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,843,861
Number of extensions: 154202
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 12
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.4 bits)