RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4980
         (192 letters)



>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 309

 Score = 31.1 bits (70), Expect = 0.060
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 133 PNI----DCSLEQYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYLHR 188
           PN      C L ++    V  Y CLG+  +L+   +        A   + AL  + YLH 
Sbjct: 75  PNTIQYRGCYLREHTAWLVMEY-CLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS 133


>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia
           blattae [TaxId: 563]}
          Length = 224

 Score = 28.2 bits (62), Expect = 0.62
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 141 QYRYAFVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAALYTIIYLHRVRK 191
              +AF    TC  T+ + +     S+PS H+++ +  AL       + + 
Sbjct: 115 IRPFAFYGVSTCNTTEQDKLSK-NGSYPSGHTSIGWATALVLAEINPQRQN 164


>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli
           [TaxId: 562]}
          Length = 114

 Score = 24.4 bits (53), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 66  GQNTSKVASTKAGPNKP 82
           GQ T   A T+ GP KP
Sbjct: 98  GQRTKTNARTRKGPRKP 114


>d1o26a_ d.207.1.1 (A:) Thy1 homologue {Thermotoga maritima [TaxId:
           2336]}
          Length = 219

 Score = 24.7 bits (53), Expect = 8.7
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 146 FVTNYTCLGTDLNLIRSARASFPSAHSAVAFYAAL--YTIIYLH 187
           FV     +G DL+ +R+AR SF            L  Y + + H
Sbjct: 12  FVELVDVMGNDLSAVRAARVSFDMGLKDEERDRHLIEYLMKHGH 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.446 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 697,420
Number of extensions: 29436
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 6
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)