BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4987
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 5 EENIILHVLVVGFHHKKGCQVF-----FFCNFHNSGGESVKGTLPGILALPYSPPLPPEN 59
E+++ H++V G+ ++G QV+ + G S + G + Y P + PE
Sbjct: 91 REDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 150
Query: 60 CKR 62
C+R
Sbjct: 151 CRR 153
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 20 KKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPP---------LPPENCKRGHREVLIG 70
+KG +V N+ G G LPG + P +PPE +G R V++
Sbjct: 527 RKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMH 586
Query: 71 LADLYQFS 78
L+ L+ +
Sbjct: 587 LSHLHPLA 594
>pdb|3DBY|A Chain A, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|B Chain B, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|C Chain C, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|D Chain D, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|E Chain E, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|F Chain F, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|G Chain G, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|H Chain H, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|I Chain I, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|J Chain J, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|K Chain K, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|L Chain L, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|M Chain M, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|N Chain N, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|O Chain O, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|P Chain P, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|Q Chain Q, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|R Chain R, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|S Chain S, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|T Chain T, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
Length = 269
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 94 PPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQ 153
P I +E E + ++L +P H +++HL LTD+ IS
Sbjct: 99 PTFINHMVNEVEEYIAVLEFLKKGEVPPVFHE-----LHYHLVWLTDAAGHAGSISGGLD 153
Query: 154 IPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSK-VSLLKD 212
+ ++LK ++ + T++ Q L V + G+++ ++ H + F+K VSL
Sbjct: 154 LVEKRLKEKSEEFTKHFEQ---FYLKAVEMTGYLRTEL----HHFPALKKFTKDVSLELK 206
Query: 213 TYHHLNSCLSQIEDLSNAPQLFVGLSAR 240
+ H L ++E+L + ++ LSAR
Sbjct: 207 LFSHF---LHEVEELELSNEVLSVLSAR 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,570,767
Number of Sequences: 62578
Number of extensions: 326427
Number of successful extensions: 620
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 5
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)