BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4987
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NBF6|AVL9_HUMAN Late secretory pathway protein AVL9 homolog OS=Homo sapiens GN=AVL9
PE=1 SV=1
Length = 648
Score = 251 bits (642), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/206 (57%), Positives = 154/206 (74%), Gaps = 2/206 (0%)
Query: 88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
QVE+++PPLI G +S+ P EWKYLP LALPDG+HNY+EDTV+FHLP + TVFG
Sbjct: 31 QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVFG 90
Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
ISC+RQI + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct: 91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150
Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
S+LK+ Y H+NS L Q+++GLS R+L+L FRH L+LFKL+LLE+K +FY
Sbjct: 151 SILKELYEHMNSSLGGAS--LEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208
Query: 268 SPVKPLCSTILSLLSLHPSMIETGLA 293
SPV L ++++LSL P MIE GL+
Sbjct: 209 SPVNKLVGALMTVLSLFPGMIEHGLS 234
>sp|Q5R991|AVL9_PONAB Late secretory pathway protein AVL9 homolog OS=Pongo abelii GN=AVL9
PE=2 SV=1
Length = 630
Score = 251 bits (642), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/206 (57%), Positives = 154/206 (74%), Gaps = 2/206 (0%)
Query: 88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
QVE+++PPLI G +S+ P EWKYLP LALPDG+HNY+EDTV+FHLP + TVFG
Sbjct: 31 QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVFG 90
Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
ISC+RQI + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct: 91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150
Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
S+LK+ Y H+NS L Q+++GLS R+L+L FRH L+LFKL+LLE+K +FY
Sbjct: 151 SILKELYEHMNSSLGGAS--LEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208
Query: 268 SPVKPLCSTILSLLSLHPSMIETGLA 293
SPV L ++++LSL P MIE GL+
Sbjct: 209 SPVNKLVGALMTVLSLFPGMIEHGLS 234
>sp|Q80U56|AVL9_MOUSE Late secretory pathway protein AVL9 homolog OS=Mus musculus GN=Avl9
PE=2 SV=2
Length = 649
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/206 (57%), Positives = 154/206 (74%), Gaps = 2/206 (0%)
Query: 88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
QVE+++PPLI G +S+ P EWKYLP LALPDG+HNY+EDTV+FHLP + TV+G
Sbjct: 31 QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVYG 90
Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
ISC+RQI + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct: 91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150
Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
S+LK+ Y H+NS L Q+++GLS R+L+L FRH L+LFKL+LLE+K +FY
Sbjct: 151 SILKELYEHMNSSLGGAS--LEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208
Query: 268 SPVKPLCSTILSLLSLHPSMIETGLA 293
SPV L ++++LSL P MIE GL+
Sbjct: 209 SPVNRLVGALMTVLSLFPGMIEHGLS 234
>sp|O13943|AVL9_SCHPO Late secretory pathway protein avl9 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=avl9 PE=3 SV=2
Length = 469
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 8/211 (3%)
Query: 78 SFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPS 137
SF + C + P IE ES + P EW LP L+LPDG+H+ E+D VYF LP
Sbjct: 7 SFQVLCLATIGFHHLRGPEIEHLFPESMDFPKEWSILPFLSLPDGAHSSEKDFVYFTLPF 66
Query: 138 LTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHA 197
D + TVFG+SC RQ+ LKN +D+TR++VQK+V V++T P +GH++ + ++T+A
Sbjct: 67 PND-EGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAVVVITTSPPFGHIKDNLDIVTNA 125
Query: 198 YFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLL 257
YF +GDFS + +L+D +H L + + + ++ + + ++R NAL+L K+L
Sbjct: 126 YFSQGDFSNLDVLRDFFHVLTRKEQDV-------HIALNINLKSFLCEWRQNALVLLKVL 178
Query: 258 LLERKCVFYCSPVKPLCSTILSLLSLHPSMI 288
LL ++ + Y + L + SLLSL P M+
Sbjct: 179 LLGKRILVYDKSAERLGNFQYSLLSLIPCMM 209
>sp|Q12500|AVL9_YEAST Late secretory pathway protein AVL9 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=AVL9 PE=1 SV=1
Length = 764
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 31/231 (13%)
Query: 83 CYVKF------QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHL- 135
C V F ++EY + L EGT S W LP ALPDGSH++EE YF L
Sbjct: 13 CLVDFHHKRGPEIEYWYG-LPEGTQS-----AELWPNLPFQALPDGSHSFEETFTYFTLL 66
Query: 136 -------------PSLTDS----KKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVL 178
L+D T+F ISC RQI ++L + D+TR+TVQK++ V+
Sbjct: 67 YDERRQRSPPNGATDLSDDSINDNTTLFAISCSRQIKSDELVTKDKDVTRSTVQKAIVVI 126
Query: 179 STVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAP-QLFVGL 237
S P++G ++ K++++T+A+F + DF +++ Y +L S + + NA +L++GL
Sbjct: 127 SRQPIFGQIKDKLSIVTNAFFLQHDFGDRKIIQSLYENLKSIYTPASLVRNAENRLYIGL 186
Query: 238 SARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMI 288
R+++ F+ NAL+L K ++LE+K + Y + V+ LC+ L+SL P ++
Sbjct: 187 CLRKILHDFKRNALVLLKAIMLEKKIIVYGNDVEALCNLQFGLISLIPDLM 237
>sp|Q4FZX0|LCHN_XENLA Protein LCHN OS=Xenopus laevis GN=lchn PE=2 SV=1
Length = 434
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 118 ALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCV 177
++ GSH + D +YF K FG++CF +PVE ++L R KSV V
Sbjct: 91 SMASGSHRVQSDFIYFR-------KGGFFGLACFANMPVE------SELERGARMKSVGV 137
Query: 178 LS 179
LS
Sbjct: 138 LS 139
>sp|Q3UHG7|LCHN_MOUSE Protein LCHN OS=Mus musculus GN=Lchn PE=2 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 118 ALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCV 177
++ GSH + D +YF K FG++CF +PVE ++L R KSV +
Sbjct: 110 SMASGSHKVQSDFIYFR-------KGPFFGLACFANMPVE------SELERGARMKSVGI 156
Query: 178 LS 179
LS
Sbjct: 157 LS 158
>sp|Q0PGW2|LCHN_RAT Protein LCHN OS=Rattus norvegicus GN=Lchn PE=2 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 118 ALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCV 177
++ GSH + D +YF K FG++CF +PVE ++L R KSV +
Sbjct: 110 SMASGSHKVQSDFIYFR-------KGPFFGLACFANMPVE------SELERGARMKSVGI 156
Query: 178 LS 179
LS
Sbjct: 157 LS 158
>sp|A4D1U4|LCHN_HUMAN Protein LCHN OS=Homo sapiens GN=LCHN PE=2 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 118 ALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCV 177
++ GSH + D +YF K FG++CF +PVE ++L R KSV +
Sbjct: 110 SMASGSHKIQSDFIYFR-------KGPFFGLACFANMPVE------SELERGARMKSVGI 156
Query: 178 LS 179
LS
Sbjct: 157 LS 158
>sp|Q1LX49|LCHN_DANRE Protein LCHN OS=Danio rerio GN=lchn PE=3 SV=1
Length = 490
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
Query: 118 ALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCV 177
++ GSH D +YF K FG++CF +PVE ++L R KSV +
Sbjct: 144 SMASGSHRISSDFIYFR-------KGCYFGLACFANMPVE------SELERGARMKSVGI 190
Query: 178 LST--VPLYGHVQVKMALITHAYFEEGDFS--------KVSLLKDTYHHL-----NSCLS 222
LS LY ++ + H G +S K ++L + L S L+
Sbjct: 191 LSPSYTLLYRYMHFLENQVRHQLQCPGQYSPLEAFYEDKKAVLPSGGNGLVTACPTSALA 250
Query: 223 QIEDLSNAPQLFVGLSA---RELILKFRHNALLLFKLLLLERKCVFYCSP 269
I + P++ + A + I F ++L+K LL ++ + + P
Sbjct: 251 PIVNRCMHPEMKITHPAGCMSQFIRFFGEQIMVLWKFALLRKRILIFSPP 300
>sp|Q54VA9|F116_DICDI Protein DENND6 homolog OS=Dictyostelium discoideum GN=DDB_G0280481
PE=3 SV=1
Length = 715
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 40/165 (24%)
Query: 83 CYVKFQVE------YAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVY-FHL 135
C + F +E Y+FP + +N C L+ PD + + + D +Y F L
Sbjct: 99 CIINFDLEIGQVLDYSFPQVNFKEEESTNLC--------FLSFPDSNSHLQGDIIYSFKL 150
Query: 136 P---SLTDSK-KTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKM 191
SL + + +G FRQ + + ++R +QKSV +LS G + M
Sbjct: 151 KETSSLGNGQCNFQYGYVFFRQ-------EKDSSISRGYLQKSVVLLSDESFVGLFKKVM 203
Query: 192 ALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVG 236
++ YF+ G+ +LL+ Y +++ N P+L +G
Sbjct: 204 EIVGPLYFDHGN----TLLEVAY----------QNIMNWPELKLG 234
>sp|A5N3P1|SYI_CLOK5 Isoleucine--tRNA ligase OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=ileS PE=3 SV=1
Length = 1034
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 51 YSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSE 110
+ PLP C+ GHRE + + +L + N+ ++ P I+G + ++C E
Sbjct: 450 WGTPLPIWECECGHRECIGSIKELREKGINVPDDIELH-----KPYIDGVKLKCDKCHKE 504
Query: 111 WKYLPTL--------ALPDGSHNY 126
+ +P + ++P H+Y
Sbjct: 505 MERVPEVIDCWFDSGSMPFAQHHY 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,602,112
Number of Sequences: 539616
Number of extensions: 4409618
Number of successful extensions: 9508
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9486
Number of HSP's gapped (non-prelim): 18
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)