Query psy4987
Match_columns 299
No_of_seqs 135 out of 306
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:54:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09794 Avl9: Transport prote 100.0 1.1E-59 2.4E-64 455.1 20.0 220 71-297 1-224 (379)
2 KOG3823|consensus 100.0 7.2E-58 1.6E-62 440.3 16.2 191 106-297 38-231 (630)
3 PF09804 DUF2347: Uncharacteri 100.0 1.3E-39 2.8E-44 305.0 17.3 190 74-292 1-220 (280)
4 KOG4704|consensus 99.9 1.8E-27 3.8E-32 223.9 13.2 201 69-287 1-233 (431)
5 KOG2432|consensus 99.9 5.6E-26 1.2E-30 220.1 14.4 200 70-289 28-282 (565)
6 PF07792 Afi1: Docking domain 99.7 1.1E-16 2.4E-21 137.0 10.8 108 71-195 2-144 (145)
7 smart00799 DENN Domain found i 98.5 9.7E-07 2.1E-11 78.2 10.5 110 173-287 3-131 (183)
8 PF02141 DENN: DENN (AEX-3) do 98.5 5.4E-07 1.2E-11 79.3 8.4 114 170-287 1-134 (185)
9 PF08616 SPA: Stabilization of 98.5 2E-07 4.3E-12 76.9 5.0 50 237-286 2-53 (113)
10 KOG3569|consensus 97.9 0.00024 5.2E-09 69.1 12.7 167 87-283 32-223 (425)
11 PF09794 Avl9: Transport prote 97.4 7.3E-05 1.6E-09 73.5 2.8 23 9-31 1-23 (379)
12 PF06218 NPR2: Nitrogen permea 92.4 2.1 4.6E-05 43.1 12.3 123 68-220 2-157 (428)
13 smart00800 uDENN Domain always 74.0 16 0.00034 28.3 6.7 55 87-150 26-86 (89)
14 PF03456 uDENN: uDENN domain; 68.9 3.7 7.9E-05 29.9 2.0 55 87-149 2-61 (65)
15 KOG1090|consensus 58.1 48 0.001 37.3 8.5 138 130-281 71-227 (1732)
16 KOG2080|consensus 54.0 25 0.00054 38.6 5.6 101 170-272 230-348 (1295)
17 KOG3789|consensus 37.6 27 0.00058 34.5 2.6 125 64-220 13-156 (396)
18 COG3700 AphA Acid phosphatase 29.6 24 0.00053 32.0 0.9 52 35-94 24-79 (237)
19 PF03002 Somatostatin: Somatos 26.6 35 0.00076 19.3 0.8 14 19-32 3-16 (18)
20 COG4466 Veg Uncharacterized pr 23.9 74 0.0016 24.8 2.5 24 72-97 45-70 (80)
21 PF08771 Rapamycin_bind: Rapam 23.2 2.8E+02 0.0062 22.1 5.9 59 184-257 10-71 (100)
No 1
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=100.00 E-value=1.1e-59 Score=455.14 Aligned_cols=220 Identities=48% Similarity=0.812 Sum_probs=201.8
Q ss_pred eEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEec---CCCCCCCeEEE
Q psy4987 71 LADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLP---SLTDSKKTVFG 147 (299)
Q Consensus 71 i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp---~~~~~~~~lYG 147 (299)
|.|||||.||.++ |++|||+||+..... .+.|.+|++|||+|||||+|+++||++||++| ....+..++||
T Consensus 1 i~~i~vV~Fhh~~--G~~vE~~ypp~~~~~----~~~~~~~~~LpflAlPDg~h~~~ed~~yF~l~~~~~~~~~~~~lfG 74 (379)
T PF09794_consen 1 ILCICVVGFHHER--GPEVEYWYPPDSSDD----PLSPQEWSNLPFLALPDGAHNSEEDFSYFTLPYDASLNRDATTLFG 74 (379)
T ss_pred CeEEEEEeccccc--CCeEEEEeCCCCCcc----ccchhhHhhCCccccCCccccCCCceEEEEeccCCCCCCCCceeec
Confidence 5689999999998 999999999743222 24578999999999999999999999999999 55567899999
Q ss_pred EEEEEecchhhhhcCCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccc-c
Q psy4987 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIE-D 226 (299)
Q Consensus 148 iS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~~-~ 226 (299)
+|||||++++++++|++++|||+|||||||||+.|+||.++++|+.+|++||+|+||+|.++|+++|+++|+++.... .
T Consensus 75 isc~RQi~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL~~vt~ayF~q~dF~~~~iL~~~~~~L~~~~~~~~~~ 154 (379)
T PF09794_consen 75 ISCFRQIKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKLSIVTPAYFEQGDFSDTEILEDFYENLNNSFKSKNGE 154 (379)
T ss_pred eeeHhhcCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976531 1
Q ss_pred CCCCCCCcccCCHHHHHHHHHHhHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchhHHhhCCCcccC
Q psy4987 227 LSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTS 297 (299)
Q Consensus 227 ~~~~~~~~~~lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~l~~g~~~~~~ 297 (299)
....++.|.|++++++|..||+++++||||+|||||||||+++++.+|++++||+||||+++++ ++||++
T Consensus 155 ~~~~~~~y~glslr~lv~~fr~~~LvL~K~LLLekKIlfy~s~ve~l~~~~~sLiSLiPgli~~-L~d~~~ 224 (379)
T PF09794_consen 155 SLQESDLYVGLSLRELVHNFRHKTLVLFKALLLEKKILFYGSPVERLCNFQLSLISLIPGLINN-LQDSAS 224 (379)
T ss_pred cccchhhhcCCCHHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCHHHHHHHHHHHHHHhHHHHHh-HhhccC
Confidence 2345568999999999999999999999999999999999999999999999999999999998 999975
No 2
>KOG3823|consensus
Probab=100.00 E-value=7.2e-58 Score=440.29 Aligned_cols=191 Identities=52% Similarity=0.925 Sum_probs=176.1
Q ss_pred CCCccccCCCccccCCCCCCCCCCeEEEEecCCCCC--CCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCCCc
Q psy4987 106 ECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDS--KKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPL 183 (299)
Q Consensus 106 ~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~~~--~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~ 183 (299)
++|..|++|||+|||||+|+++|||+||++|....+ .+++||+||+||+++++|+.|++++|||+||||||||+|.|+
T Consensus 38 ~~p~~W~~LPflaLPDGsHsfeedfvyFtLp~~~~PnDegtifgvSC~RQi~~~~Lk~~~~DvTRStVQKavvVi~r~Pi 117 (630)
T KOG3823|consen 38 ECPSGWKYLPFLALPDGSHSFEEDFVYFTLPSLYEPNDEGTIFGVSCYRQIRVEKLKIRTADVTRSTVQKAVVVIARLPI 117 (630)
T ss_pred cCccccccCcceecCCCccccccceEEEecccccCCCCCccEEEEEeehhhhhhhhcccccccchhhhheeEEEEEcCCc
Confidence 468899999999999999999999999999974433 469999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccccCCCCCCCcccC-CHHHHHHHHHHhHHHHHHHhccCCc
Q psy4987 184 YGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGL-SARELILKFRHNALLLFKLLLLERK 262 (299)
Q Consensus 184 f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~~~~~~~~~~~~~l-sL~~lv~~fg~~il~LwKl~LL~kR 262 (299)
||+++++|.+++.|||.|+||+++++|..+|+++|+++.+....-...++|.|+ +|++++..|+++.++|+|++||+||
T Consensus 118 fG~IkdkL~iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~l~R~~e~~~hIgL~nLr~il~~wr~naLvLlK~~lL~kr 197 (630)
T KOG3823|consen 118 FGYIKDKLAIVTNAFFDQGDFSGTELLAKAYQQLNACLQDDLSRRPERHFHIGLSNLREILLHWRHNALVLLKLMLLQKR 197 (630)
T ss_pred cceehhhhHHhhhhhhcccCcccHHHHHHHHHHHHhhcchhhhcchhhheeehHHHHHHHHHHHHHhHHHHHHHHHhcce
Confidence 999999999999999999999999999999999999887632222345688999 5999999999999999999999999
Q ss_pred eeeecCCCcchhhHHHHHhhcchhHHhhCCCcccC
Q psy4987 263 CVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTS 297 (299)
Q Consensus 263 ILv~s~~~~~~c~~vlsLlSLIP~~l~~g~~~~~~ 297 (299)
|+||+++++..|+.+++|+||||.++.+ |||+++
T Consensus 198 Ivvyg~~ve~lcnlq~gl~SLIP~~Ms~-lqDs~s 231 (630)
T KOG3823|consen 198 IVVYGSPVEQLCNLQLGLASLIPSPMSD-LQDSLS 231 (630)
T ss_pred EEEeCCcHHHHHHHHHHHHHhcCCcchh-hhcccC
Confidence 9999999999999999999999999986 999874
No 3
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=100.00 E-value=1.3e-39 Score=305.01 Aligned_cols=190 Identities=24% Similarity=0.346 Sum_probs=156.1
Q ss_pred EEEEeeccccCCCceEEEEcCC-CCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCCCCCCCeEEEEEEEE
Q psy4987 74 LYQFSFNIQCYVKFQVEYAFPP-LIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFR 152 (299)
Q Consensus 74 vFvv~FD~~~~~Gn~IEwsyP~-~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~~~~~~lYGiS~fR 152 (299)
||+++||+|+ ||+|+|++|. + .++.++||||||||+|++++|+|||+. +.+||+||||
T Consensus 1 lFl~~FD~k~--Gn~i~W~~~~~~------------i~L~gVEfKsLPSGlH~v~~D~VyF~~-------~~~~Gls~F~ 59 (280)
T PF09804_consen 1 LFLVKFDVKK--GNTIVWSRPAPD------------IDLEGVEFKSLPSGLHEVDEDVVYFVH-------DGYYGLSCFR 59 (280)
T ss_pred CEEEEecCCC--CcEEEEeccCCC------------CccCCeeEecCCcccccccccEEEEec-------CCEEEEEEEE
Confidence 6999999998 9999999994 3 357788999999999999999999995 6899999999
Q ss_pred ecchhhhhcCCCCccccceeEEEEEEeCCCc--h---hhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhcccccc---
Q psy4987 153 QIPVEKLKNQTADLTRNTVQKSVCVLSTVPL--Y---GHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQI--- 224 (299)
Q Consensus 153 Qi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~--f---~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~--- 224 (299)
|.+.++..+|+++| +|||||+..|. + ....+.|+.+++.|.+.. .+++.||++|+..+......
T Consensus 60 ~~~~~~~~~r~arM------~SvGVL~~~~~~~~~~~w~h~~~L~~l~~~~~~~~--~~~~~le~~~e~~~~~~~~~~~~ 131 (280)
T PF09804_consen 60 QNPADEEEERGARM------YSVGVLVPPPNGFYGRLWRHAEFLEELARHLLKDP--GDYSPLEAYWEKNKADENSSSSS 131 (280)
T ss_pred eCCCCcccccCcEE------EEEEEEecccchhhhHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHhcccccccccC
Confidence 99988778888888 99999998642 2 334788999999998765 67899999998775521100
Q ss_pred ------------------ccCCCCCCCcccCCHHHHHHHHHHhHHHHHHHhccCCceeeecCCC-cchhh--HHHHHhhc
Q psy4987 225 ------------------EDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPV-KPLCS--TILSLLSL 283 (299)
Q Consensus 225 ------------------~~~~~~~~~~~~lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~-~~~c~--~vlsLlSL 283 (299)
.......+.|+..+|++|++.|||+||+|||++||||||||+++++ +.+|+ |++|++|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~pv~~~c~~vY~ls~Ls~ 211 (280)
T PF09804_consen 132 PPDSHSRNRSLSDATALIPPDPPLSPYHPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPPPVEVACSFVYCLSLLSS 211 (280)
T ss_pred CccccccccccccccccCCCccCCCCCCHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCCChHHHHHHHHHHHhhcc
Confidence 0011223456778999999999999999999999999999999655 67777 67899999
Q ss_pred chhHHhhCC
Q psy4987 284 HPSMIETGL 292 (299)
Q Consensus 284 IP~~l~~g~ 292 (299)
||..+....
T Consensus 212 ip~~~~~~~ 220 (280)
T PF09804_consen 212 IPQSLSGSL 220 (280)
T ss_pred CCccccccC
Confidence 999887644
No 4
>KOG4704|consensus
Probab=99.95 E-value=1.8e-27 Score=223.85 Aligned_cols=201 Identities=18% Similarity=0.208 Sum_probs=141.8
Q ss_pred eceEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCC------CCCC
Q psy4987 69 IGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSL------TDSK 142 (299)
Q Consensus 69 ~~i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~------~~~~ 142 (299)
|+|+|||+++||+|+ ||.|||+||.+++ +.+|+||+||+|+|+.+.|++||+.|.. ..-+
T Consensus 1 ~~i~~i~l~~fd~k~--g~~Vew~~p~did------------legIEfks~psGihe~~~d~I~Fr~~~~l~~~~~~k~~ 66 (431)
T KOG4704|consen 1 MSIQAIVLATFDAKE--GYNVEWYYPGDID------------LEGIEFKSFPSGIHELDNDTIFFRFQDQLCLSVFSKLQ 66 (431)
T ss_pred CceeEEEeeeecccc--CceEEEecccccc------------ccceeeeccccccccccCceEEEEecchhhhhhhhccc
Confidence 579999999999998 9999999998754 5667899999999999999999999752 1124
Q ss_pred CeEEEEEEEEecchhhhhcCCCCcccccee-EEEEEEeCC--CchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhc
Q psy4987 143 KTVFGISCFRQIPVEKLKNQTADLTRNTVQ-KSVCVLSTV--PLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNS 219 (299)
Q Consensus 143 ~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQ-KSV~VLs~~--P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~ 219 (299)
..-||.++|.| +..++...+.++.|+.|| +|+||+... .....-..=.+.+-++|-..+-- +-|+++++....
T Consensus 67 ~~~~~~~~F~~-~~f~il~~d~~~~r~~vkm~s~g~~i~~~~~l~~~k~hF~e~~~h~ya~~~~~---Shl~s~~rD~~k 142 (431)
T KOG4704|consen 67 HPSFERSAFFT-SVFLILSDDINFGRAVVKMGSTGLYIANGLSLATLKYHFGEDASHTYASEKCT---SHLLSDSRDFFK 142 (431)
T ss_pred CcccccchHhh-hhhhhccccchhhhhhheecceEEEeccchhHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHhhh
Confidence 56788888888 566777788999999999 799999842 11221222244555566544432 444444433332
Q ss_pred ccccc----c-c----CC---------CCCCCcccCCHHHHHHHHHHhHHHHHHHhccCCceeeecCCC--cchhh---H
Q psy4987 220 CLSQI----E-D----LS---------NAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPV--KPLCS---T 276 (299)
Q Consensus 220 ~~~~~----~-~----~~---------~~~~~~~~lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~--~~~c~---~ 276 (299)
.+.-. + + .. ..+..|.-..++.|++.+||.|+.|||++|||||||+++|+. ..+|+ |
T Consensus 143 ~l~~~~~~~e~~~~~~~l~s~~~~~~~~~~~~h~~~y~~~~~~~lGp~i~~LwKfaLlrkRILi~sp~~~~~~~c~~~iy 222 (431)
T KOG4704|consen 143 SLQTSAVNLEFDSLFEKLQSNKFAILGANSKEHSQSYATILLDHLGPAIYCLWKFALLRKRILIISPHDDQLYSCIDMIY 222 (431)
T ss_pred hhhccccccccCchhhhcccceEEecCchhhhhhHHHHHHHHHHhccHHHHHHHHHHHhheEEEEeCCCCceeehhhhHH
Confidence 22110 0 0 00 011123344788899999999999999999999999999874 36775 5
Q ss_pred HHHHhhcchhH
Q psy4987 277 ILSLLSLHPSM 287 (299)
Q Consensus 277 vlsLlSLIP~~ 287 (299)
|+++++..|..
T Consensus 223 c~~~i~~~s~~ 233 (431)
T KOG4704|consen 223 CLSSIKRSSDA 233 (431)
T ss_pred HHHhhhcCCcc
Confidence 67777765543
No 5
>KOG2432|consensus
Probab=99.93 E-value=5.6e-26 Score=220.10 Aligned_cols=200 Identities=21% Similarity=0.287 Sum_probs=166.5
Q ss_pred ceEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCe-EEEEecCCC---------
Q psy4987 70 GLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDT-VYFHLPSLT--------- 139 (299)
Q Consensus 70 ~i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~-vyF~lp~~~--------- 139 (299)
-+-|+|||+||++. |+.+|.+||++.-++.. |..+|||+|+||++..+..|+ ++|++++.+
T Consensus 28 WlHc~Cvv~FDLel--GQalE~iYP~~~~ls~~-------E~~nicy~aFPDSNs~~~~Dt~F~fR~R~~~~~~~~~~~d 98 (565)
T KOG2432|consen 28 WLHCFCVVTFDLEL--GQALEVIYPPDFMLSDQ-------EKINICYLAFPDSNSSCMGDTKFHFRFRRTTRRDSLPGYD 98 (565)
T ss_pred hheeeEEEEechhh--cceeeeecCCccccccc-------hheeeeEeecCCCCccccccceEEEEEecccccccccccc
Confidence 46899999999998 99999999999877763 688999999999999999999 778886421
Q ss_pred -------CCCCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHH
Q psy4987 140 -------DSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKD 212 (299)
Q Consensus 140 -------~~~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~ 212 (299)
.+..++||+.+|||. +++...||+.||||++++.+|+++.+..+|..+++.||+.++ +.++.
T Consensus 99 kd~~~l~~d~~ylyG~VffRQ~-------~Dk~l~RGy~QKSvviis~LPf~~lf~tvl~~iap~yFe~gt----~~iea 167 (565)
T KOG2432|consen 99 KDPPALRQDGMYLYGFVFFRQT-------RDKTLKRGYFQKSVVIISFLPFFSLFYTVLFQIAPFYFELGT----NAIEA 167 (565)
T ss_pred CCCcccCCCCceeEEEEeeeee-------chhhhhhhhhhhceEEEEecccccccchHHhhhchHHHhccc----chhhh
Confidence 346899999999995 689999999999999999999999999999999999999887 78999
Q ss_pred HHHHHhccccccc--------------cCC---------------------CCCCCcccCCHHHHHHHHHH---hHHHHH
Q psy4987 213 TYHHLNSCLSQIE--------------DLS---------------------NAPQLFVGLSARELILKFRH---NALLLF 254 (299)
Q Consensus 213 ~~~~ln~~~~~~~--------------~~~---------------------~~~~~~~~lsL~~lv~~fg~---~il~Lw 254 (299)
+...++.|+.+.. ..+ ..+..+.+..=-+++..++. ++-+||
T Consensus 168 a~~~i~~Wp~p~~Gk~LELPll~c~~KI~lP~a~~~p~~ar~~~~~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLW 247 (565)
T KOG2432|consen 168 ACCGIDRWPAPVPGKTLELPLLGCKKKIRLPTAHSLPFEARKTGAVELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLW 247 (565)
T ss_pred hhccccCCCCccCCceeeecccceeeeeeccccccCcccccccceeeeccCccccccCCcchhHHHHhhHHHHHHHHHHH
Confidence 9999999986531 000 00000111111246666664 778999
Q ss_pred HHhccCCceeeecCCCcchhhHHHHHhhcchhHHh
Q psy4987 255 KLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIE 289 (299)
Q Consensus 255 Kl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~l~ 289 (299)
+++|++++|+|+++.+..+++.|.+|+++|.+++.
T Consensus 248 ELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~ 282 (565)
T KOG2432|consen 248 ELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIY 282 (565)
T ss_pred HHHHhCCCeEEecCCchhhHHHHHHHHHHhhccee
Confidence 99999999999999999999999999999999875
No 6
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=99.70 E-value=1.1e-16 Score=137.05 Aligned_cols=108 Identities=19% Similarity=0.323 Sum_probs=91.3
Q ss_pred eEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCCC-----------
Q psy4987 71 LADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLT----------- 139 (299)
Q Consensus 71 i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~----------- 139 (299)
|..|++++||+++ |++|+++||..+.+.+ +-..|..++||||+|.+.+|++.|.|.+..
T Consensus 2 veyIL~AEFDid~--Gp~l~hQYP~~i~g~~--------de~~LAelMLPDg~h~r~~DwTvFfL~~~~~~~~~~~~~~~ 71 (145)
T PF07792_consen 2 VEYILLAEFDIDK--GPVLKHQYPSPIPGLE--------DEHMLAELMLPDGAHKRSEDWTVFFLNRDKSTEEFQLFKNK 71 (145)
T ss_pred eeEEEEEEEecCc--CCEEEEeCCCCccCCc--------cHHHHHHhhCCcccccccCCEEEEEEccCCCCchhhhcccc
Confidence 6789999999999 9999999998765522 245688999999999999999999896421
Q ss_pred ------------------------CCCCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCCCchhhHHHHHHHHH
Q psy4987 140 ------------------------DSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALIT 195 (299)
Q Consensus 140 ------------------------~~~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~ 195 (299)
.....+|.++.+|+. +|++++||.++||+.|+|+.|+|..++..|..++
T Consensus 72 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ly~ln~v~~k-------~D~~~rRGA~vKa~aI~T~~~~~~ifKPlL~laL 144 (145)
T PF07792_consen 72 KSPSNSSDNNSNNIEESSNDDENQEGPPPLYVLNLVNTK-------HDKTVRRGAVVKAMAICTRHPFFHIFKPLLLLAL 144 (145)
T ss_pred ccccccccccccccccccccccccCCCCceEEEEeeccc-------cCcccccccceeEEEEEcccHHHHHHhHHHHHhh
Confidence 023789999999974 5889999999999999999999999999887765
No 7
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=98.50 E-value=9.7e-07 Score=78.24 Aligned_cols=110 Identities=25% Similarity=0.320 Sum_probs=79.6
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccc--cc----------cC--C----CCCCCc
Q psy4987 173 KSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQ--IE----------DL--S----NAPQLF 234 (299)
Q Consensus 173 KSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~--~~----------~~--~----~~~~~~ 234 (299)
||+|+||+.|+|+.+++-|+.+.+.++...+ ..+|.+-..+. +.-+ .. .. . ...-..
T Consensus 3 ~~icilS~~P~~~~f~~~L~~l~~~~~~~~~----~~~e~~~~~~~-~p~P~pg~~~~~~~~~~~~~~~~~~p~~~~lp~ 77 (183)
T smart00799 3 KCICILSRLPFFELFRKILNELYRLLPSSSN----LPLELLISLLL-YPVPPPGGSLVLVSLGPGDLIELQRPLDSSLPL 77 (183)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHccCcc----chHHHHHHHhC-CCCCcCCCeEEEEEcCCCCcEEEECCCCCCCCC
Confidence 8999999999999999999999988875332 23333333333 3222 10 00 0 000012
Q ss_pred ccCCHHHHHHHHHH-hHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchhH
Q psy4987 235 VGLSARELILKFRH-NALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSM 287 (299)
Q Consensus 235 ~~lsL~~lv~~fg~-~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~ 287 (299)
.+.++..+++.++. +++.||.++||||||+|++++.+.++..+.|+.+||-++
T Consensus 78 ~~~~~~~lf~~l~~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf 131 (183)
T smart00799 78 IDFSLHELFECLGVENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPF 131 (183)
T ss_pred CCccHHHHHHhCCHHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCc
Confidence 24577889999995 888999999999999999999999999999999987654
No 8
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=98.48 E-value=5.4e-07 Score=79.27 Aligned_cols=114 Identities=26% Similarity=0.310 Sum_probs=74.1
Q ss_pred ceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHH-Hhcccccc--c---c-------C--C---CCC
Q psy4987 170 TVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHH-LNSCLSQI--E---D-------L--S---NAP 231 (299)
Q Consensus 170 ~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~-ln~~~~~~--~---~-------~--~---~~~ 231 (299)
++.||+|++|+.|+|..+++-|+.+.+.+..... ..++++..+ +....-+. . . . . ...
T Consensus 1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~~~----~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~ 76 (185)
T PF02141_consen 1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSSRI----NPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNN 76 (185)
T ss_dssp ----EEEEEESS--HHHHHHHHHHHHHHHHTT-H----HHHHHHHHH-HHHS----TT-B--------------B---SS
T ss_pred CCceEEEEECCCcHHHHHHHHHHHHHHHHhcCch----hHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCcc
Confidence 4679999999999999999999999999886553 455666655 33322111 0 0 0 0 001
Q ss_pred CC-cccCCHHHHHHHHHH-hHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchhH
Q psy4987 232 QL-FVGLSARELILKFRH-NALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSM 287 (299)
Q Consensus 232 ~~-~~~lsL~~lv~~fg~-~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~ 287 (299)
.. ..+.++..+++.++. +++.+|.++|+|+||+|++++.+.++..+.|+.+||-+.
T Consensus 77 ~lp~~~~~~~~lf~~l~~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~Pf 134 (185)
T PF02141_consen 77 DLPLSDFSLSPLFSCLSIDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYPF 134 (185)
T ss_dssp S---TSHHHHHHHHHS-HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTTS
T ss_pred CCCccccchhHHHhcCCHHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccCc
Confidence 11 123356678999995 888999999999999999999999999999999987553
No 9
>PF08616 SPA: Stabilization of polarity axis
Probab=98.47 E-value=2e-07 Score=76.88 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHhHHHHHHHhccCCceeeecCCCcc--hhhHHHHHhhcchh
Q psy4987 237 LSARELILKFRHNALLLFKLLLLERKCVFYCSPVKP--LCSTILSLLSLHPS 286 (299)
Q Consensus 237 lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~~~--~c~~vlsLlSLIP~ 286 (299)
.++.+++..|++.+..||+++|++|||+|+++++.. +|++++|+.+||++
T Consensus 2 ~~l~~~~~~f~~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p 53 (113)
T PF08616_consen 2 HSLLHLFQQFGPEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISP 53 (113)
T ss_pred ccHHHHHHhhhhHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCc
Confidence 367889999999999999999999999999987766 99999999999998
No 10
>KOG3569|consensus
Probab=97.85 E-value=0.00024 Score=69.13 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCC--CCCCCe---EEEEecCCCCCCCeEEEEEEEEecchhhhhc
Q psy4987 87 FQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSH--NYEEDT---VYFHLPSLTDSKKTVFGISCFRQIPVEKLKN 161 (299)
Q Consensus 87 n~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H--~~~eD~---vyF~lp~~~~~~~~lYGiS~fRQi~~~~l~~ 161 (299)
+.|.|+||++-.+. ..++.||=-|+||+.- ..+++. +-|.+-. .+++.-||....+ +
T Consensus 32 P~v~~QFP~d~~de--------e~lkaipqFCFP~~~e~~~vs~~~~q~FsFvLTd--~dg~rrFGfCRL~---~----- 93 (425)
T KOG3569|consen 32 PEVTYQFPPDFQDE--------EILKAIPQFCFPDAVEWLPVSEYGSQTFSFVLTD--EDGSRRFGFCRLP---S----- 93 (425)
T ss_pred ccchhhCCCccccH--------HHHhhchhccCCcccccccccccccceEEEEEEc--CCCceeeeeEecC---C-----
Confidence 56899999765532 4588999999999998 555554 5566743 3457788988742 1
Q ss_pred CCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccc--cc-----c-C------
Q psy4987 162 QTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQ--IE-----D-L------ 227 (299)
Q Consensus 162 r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~--~~-----~-~------ 227 (299)
+ .++..||||++|.|+.+...|..+..---. ++....+.+..++-..+-+ .. . +
T Consensus 94 -G-------~~~c~CilS~l~wF~vF~KlLn~v~~~~~~----~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~~~e 161 (425)
T KOG3569|consen 94 -G-------LPECYCILSRLGWFGVFSKLLNEVEDRRGI----SQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGSGTE 161 (425)
T ss_pred -C-------CCeEEEEeeCCChHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCCceE
Confidence 1 348899999999999998888777643211 1123334444443332211 10 0 0
Q ss_pred -C-CCCC---CcccCCHHHHHHHHH-HhHHHHHHHhccCCceeeecCCCcchhhHHHHHhhc
Q psy4987 228 -S-NAPQ---LFVGLSARELILKFR-HNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSL 283 (299)
Q Consensus 228 -~-~~~~---~~~~lsL~~lv~~fg-~~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSL 283 (299)
+ ...+ +--.-.+.+++...- .+++.||-.+|+||||||.++..+.++.++.|...|
T Consensus 162 ~ipd~r~LpS~~E~~~f~elf~als~~qml~ifASlL~ERRIifia~KLStLssCiHa~~AL 223 (425)
T KOG3569|consen 162 VIPDTRPLPSILEHVDFTELFVALSVRQMLQIFASLLLERRIIFIASKLSTLSSCIHAVAAL 223 (425)
T ss_pred ECcCCCCCCCcccccCHHHHHhhcCHHHHHHHHHHHHhhceeEeeccchhHHHHHHHHHHHH
Confidence 0 0000 001124556666666 489999999999999999999888766666555444
No 11
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=97.45 E-value=7.3e-05 Score=73.51 Aligned_cols=23 Identities=43% Similarity=0.765 Sum_probs=21.6
Q ss_pred EEEEEEeeeeeccCceEEEeccc
Q psy4987 9 ILHVLVVGFHHKKGCQVFFFCNF 31 (299)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (299)
|++||||||||++||+||||+.-
T Consensus 1 i~~i~vV~Fhh~~G~~vE~~ypp 23 (379)
T PF09794_consen 1 ILCICVVGFHHERGPEVEYWYPP 23 (379)
T ss_pred CeEEEEEecccccCCeEEEEeCC
Confidence 68999999999999999999984
No 12
>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease.
Probab=92.39 E-value=2.1 Score=43.11 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=74.5
Q ss_pred eeceEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCCC--CC----
Q psy4987 68 LIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLT--DS---- 141 (299)
Q Consensus 68 ~~~i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~--~~---- 141 (299)
..||.|||.++||... |+.|.|++|+..-.... ..| +++.-|.+|+.. +.
T Consensus 2 f~pI~~IFya~F~p~~--GpkI~~Q~P~~~i~~~~------~~F----------------d~is~yIIPk~~lc~rlitv 57 (428)
T PF06218_consen 2 FVPIHAIFYAEFHPTE--GPKIVHQVPEGSIKPSL------FNF----------------DSISNYIIPKPELCNRLITV 57 (428)
T ss_pred CCceEEEEEeecCCCC--CCEEEEECCcccccccc------cch----------------hhcccEEecChHHhCceeEE
Confidence 4689999999999998 99999999975320000 122 233445566421 00
Q ss_pred CCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCC----CchhhHHHHHHHHHHH------HhhcCC--------
Q psy4987 142 KKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTV----PLYGHVQVKMALITHA------YFEEGD-------- 203 (299)
Q Consensus 142 ~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~----P~f~~l~~~L~~~~~a------yF~q~d-------- 203 (299)
...-|.|..|=-. =.++...|+...--+|.+.+. .-|..+-.||....++ |..+.+
T Consensus 58 ~~~~~kIlg~PV~------I~~~kY~RN~f~FN~cfV~~~~~~~~~YepvV~KLa~~l~~LE~q~~fLS~~~~~~~~~~~ 131 (428)
T PF06218_consen 58 NAGGYKILGYPVC------IEDPKYERNEFIFNFCFVFDYDSDTSPYEPVVRKLARYLRELEEQSGFLSKEEKDPNFFKS 131 (428)
T ss_pred eeCCeEEEEeeeE------ecCCeeccceEEEEEEEEEcCCCCccchHHHHHHHHHHHHHHHHHhhhhcCcccccccccc
Confidence 0122445444321 136779999999999999863 2355555556555532 222222
Q ss_pred ---------CCchhhHHHHHHHHhcc
Q psy4987 204 ---------FSKVSLLKDTYHHLNSC 220 (299)
Q Consensus 204 ---------~~~~~iLe~~~~~ln~~ 220 (299)
..-.++|++.++.+|+.
T Consensus 132 ~~~~~~~~~~~i~~Lle~i~~DLN~y 157 (428)
T PF06218_consen 132 KEIGSKISKSSIPSLLEQIFEDLNNY 157 (428)
T ss_pred ccccccccHhHHHHHHHHHHHhhccc
Confidence 12246788889988863
No 13
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=74.03 E-value=16 Score=28.27 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCC------CCCeEEEEecCCCCCCCeEEEEEE
Q psy4987 87 FQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNY------EEDTVYFHLPSLTDSKKTVFGISC 150 (299)
Q Consensus 87 n~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~------~eD~vyF~lp~~~~~~~~lYGiS~ 150 (299)
+.|...||+....+. ...+.|+..|+|+|.-.. ...+..|+|-. .++...||++-
T Consensus 26 p~il~~yP~~~~~~~-------~~~~~i~~FCfP~G~~~~~~~~~~~~~~f~FvLT~--~dG~r~yG~Cl 86 (89)
T smart00800 26 PEILQRYPEKDEEDF-------PLPDSIPLFCFPEGLLFVTQKSSKDPQFFSFVLTD--IDGSRRYGFCR 86 (89)
T ss_pred eEEEeECCCCCCccC-------CCccCCCeeECCCCeEeecccCCCCCcEEEEEEEC--CCCCEEEEEEE
Confidence 368899997532221 235678888999996554 23456688832 34577898763
No 14
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=68.86 E-value=3.7 Score=29.89 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCC-----eEEEEecCCCCCCCeEEEEE
Q psy4987 87 FQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEED-----TVYFHLPSLTDSKKTVFGIS 149 (299)
Q Consensus 87 n~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD-----~vyF~lp~~~~~~~~lYGiS 149 (299)
+.|...||+...... +..-.+|+..++|+|+.-..+. +..|+|-. .++...||.+
T Consensus 2 p~il~~yP~~d~~~~------~~~~~~i~~FCfP~G~~~~~~~~~~~~~f~FvLT~--~~G~r~Yg~C 61 (65)
T PF03456_consen 2 PEILDRYPPSDHEPD------PPLPPSIPMFCFPDGIEISSQSRPPPQFFSFVLTD--EDGSRLYGYC 61 (65)
T ss_dssp -EEEEEEST--T---------HHHHHHHHHHHS-S-CCCCGGG-GSSCEEEEEEE---TTS-EEEEEE
T ss_pred CEEEEECCCCccccC------CCChhhCCccCCCCCcEeeccccCCCeEEEEEEEC--CCCCEEEEEE
Confidence 368899997533111 2346779999999998876655 45677743 3346789876
No 15
>KOG1090|consensus
Probab=58.14 E-value=48 Score=37.27 Aligned_cols=138 Identities=18% Similarity=0.135 Sum_probs=77.3
Q ss_pred eEEEEecCCCCCCCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhh
Q psy4987 130 TVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSL 209 (299)
Q Consensus 130 ~vyF~lp~~~~~~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~i 209 (299)
|+|=.+-...+....-|.+|...-. ..|-.+--+|+++|++.-.=..+++-|..+...|-. ..| ..
T Consensus 71 ff~~ilt~~~~~r~~~~~ls~~e~~----------~~t~~~~~~~ivlis~~~~~~~fk~~l~~i~~~~~~-~~~---~~ 136 (1732)
T KOG1090|consen 71 FFYQILTTERGTRRIAYVLSTWEED----------EKTLNFKAVSIVLISQNFHPKAFKEILLEISNDLRT-PEF---SS 136 (1732)
T ss_pred hhhhheecccCceeEEEEeehhhhh----------hhhhcccceEEEEEecccCHHHHHHHHHHHHHHhcC-ccc---cc
Confidence 4444443323333555666655321 122333338999999764445667777777665533 223 33
Q ss_pred HHHHHHHHhcccccc----c-----------cCCCCCCCcccCCHHHHHHHHH-HhHHHHHHHhccCCceeeecCCCc--
Q psy4987 210 LKDTYHHLNSCLSQI----E-----------DLSNAPQLFVGLSARELILKFR-HNALLLFKLLLLERKCVFYCSPVK-- 271 (299)
Q Consensus 210 Le~~~~~ln~~~~~~----~-----------~~~~~~~~~~~lsL~~lv~~fg-~~il~LwKl~LL~kRILv~s~~~~-- 271 (299)
++++...+.-..-.. + ..+.+...-.|-.+.-|++-+| .+++.|.-++|.+-||++.++.--
T Consensus 137 ~~~li~~l~~~l~~~~s~~~~~~~tl~~~~~~~l~p~~p~tg~~v~~lfk~lg~qnvi~ii~a~lsd~ri~~~s~~~~~l 216 (1732)
T KOG1090|consen 137 SSELIRFLTYELVEEGSTIEIRTKTLHVELGFELIPISPVTGKDVAMLFKMLGFQNVIKIIHALLSDCRIVLASSSLMRL 216 (1732)
T ss_pred HHHHHHHhheEEeecCCCCceEEEEeecccCceeeecCCCCCccHHHHHHHhhhhHHHHHHHHHHhcceEeeehhHHHHH
Confidence 444444443322110 0 0111111123445667899999 589999999999999999998754
Q ss_pred -chhhHHHHHh
Q psy4987 272 -PLCSTILSLL 281 (299)
Q Consensus 272 -~~c~~vlsLl 281 (299)
.+|+.++||+
T Consensus 217 s~~~~ai~sll 227 (1732)
T KOG1090|consen 217 SRCQNAILSLL 227 (1732)
T ss_pred HHHHHHHHHHh
Confidence 5566655554
No 16
>KOG2080|consensus
Probab=54.02 E-value=25 Score=38.58 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=66.8
Q ss_pred ceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhcc-ccc--c--------ccC-CCCCCC----
Q psy4987 170 TVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSC-LSQ--I--------EDL-SNAPQL---- 233 (299)
Q Consensus 170 ~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~-~~~--~--------~~~-~~~~~~---- 233 (299)
+|-|+++.|+.+|+-...++-|+.+.++--.|+-. .-.||++..++--- +-+ . ..+ +..+..
T Consensus 230 yvaKsi~li~~lp~~~A~~~fL~~lyr~~trq~~~--plpLEsyi~Nilyev~lp~pgrsl~vy~~~~~ii~q~~~a~el 307 (1295)
T KOG2080|consen 230 YVAKSICLITPLPFMSACSEFLSQLYRAVTRQQPP--PLPLESYIYNILYEVPLPPPGRSLKVYGVYDPIICQRPFADEL 307 (1295)
T ss_pred HhhhheeecccchHHHHHHHHHHHHHhccCCCCCC--CcCHHHHHhhhheecccCCCCceeeEEecCCcccccCCCCccc
Confidence 35589999999998888888888888877665543 23567765554321 111 0 011 111110
Q ss_pred -cccCCHHHHHHHHH-HhHHHHHHHhccCCceeeecCCCcc
Q psy4987 234 -FVGLSARELILKFR-HNALLLFKLLLLERKCVFYCSPVKP 272 (299)
Q Consensus 234 -~~~lsL~~lv~~fg-~~il~LwKl~LL~kRILv~s~~~~~ 272 (299)
..+-.+++.|..+| ++++.|+.++|||--||.|++.-.+
T Consensus 308 pL~dfplR~~F~~lgVenviql~tCvLle~qill~s~dyqr 348 (1295)
T KOG2080|consen 308 PLDDFPLREYFELLGVENVIQLFTCVLLENQILLYSQDYQR 348 (1295)
T ss_pred ccccHhHHHHHHHhcchHHHHHHHHHHhhhHHHhhhhhHHH
Confidence 11225778899998 6999999999999999999987553
No 17
>KOG3789|consensus
Probab=37.64 E-value=27 Score=34.53 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCcceeceEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCe-EEEEecCCCCC-
Q psy4987 64 HREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDT-VYFHLPSLTDS- 141 (299)
Q Consensus 64 ~~~~~~~i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~-vyF~lp~~~~~- 141 (299)
+..+.++|-|||+++||... |..|-++.|++.-.. .++| |+ --+.+|+..-.
T Consensus 13 ~~s~~~~i~~If~seFhpt~--G~kI~~evP~~~i~n------------~~~F------------~tik~yIIPKp~L~~ 66 (396)
T KOG3789|consen 13 TFSDAPRILCIFLSEFHPTL--GPKIKCEVPKNNIKN------------EATF------------DTIKVYIIPKPELCR 66 (396)
T ss_pred ccCCCCcEEEEehhhhCccc--CceeEEecCcccccc------------ccch------------hhhceeeccCHHHhc
Confidence 56677889999999999987 999999999753211 1112 11 11234431100
Q ss_pred -----CCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCC--------CchhhHHHHHHHHHHHH-hhcCCCC--
Q psy4987 142 -----KKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTV--------PLYGHVQVKMALITHAY-FEEGDFS-- 205 (299)
Q Consensus 142 -----~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~--------P~f~~l~~~L~~~~~ay-F~q~d~~-- 205 (299)
...-|-+.+|= +. -.++...|+.+---+|.+++. |....+.+-|..+-+++ |-...-+
T Consensus 67 k~iTv~~~~~kvig~P---V~---I~~~~Y~Rnaf~FNm~fV~d~~~~s~~YePiVkkla~yl~~LE~e~~flS~~~~k~ 140 (396)
T KOG3789|consen 67 KLITVKAMRYKVIGYP---VG---IDHKKYERNAFLFNMCFVFDMTAASTMYEPIVKKLAEYLIVLEEESKFLSNEESKD 140 (396)
T ss_pred eEEEEeeceeEEEeec---ee---eccchhhccceEEEEEEEeccccccccchHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 12334555552 11 125568888888888888863 34444555555444333 2222111
Q ss_pred -chhhHHHHHHHHhcc
Q psy4987 206 -KVSLLKDTYHHLNSC 220 (299)
Q Consensus 206 -~~~iLe~~~~~ln~~ 220 (299)
-.+++|..++.+|+.
T Consensus 141 ~i~~vme~il~DLNn~ 156 (396)
T KOG3789|consen 141 QIQDVMERILEDLNNK 156 (396)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 236778888888865
No 18
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=29.61 E-value=24 Score=32.03 Aligned_cols=52 Identities=27% Similarity=0.209 Sum_probs=42.7
Q ss_pred CCccccccccccccCCCCCCCCCcccC----CCCCcceeceEEEEEEeeccccCCCceEEEEcC
Q psy4987 35 GGESVKGTLPGILALPYSPPLPPENCK----RGHREVLIGLADLYQFSFNIQCYVKFQVEYAFP 94 (299)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~vFvv~FD~~~~~Gn~IEwsyP 94 (299)
-|.++.-|-||+-+---+-..|++|+. ++..++++||+ |.||++- +|.++-|
T Consensus 24 ~g~s~pytq~Gtna~~l~~qa~ihwiSvaqI~~SLeG~~Pi~----VsFDIDD----TvLFsSp 79 (237)
T COG3700 24 LGSSPPYTQPGTNAARLAEQAPIHWISVAQIENSLEGRPPIA----VSFDIDD----TVLFSSP 79 (237)
T ss_pred cCCCCCCCCCCccHHHHhhhCCeeEEEHHHHHhhhcCCCCee----EeeccCC----eeEeccc
Confidence 367788889999998888999999986 34778899998 5799976 8888866
No 19
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=26.65 E-value=35 Score=19.30 Aligned_cols=14 Identities=43% Similarity=1.018 Sum_probs=11.4
Q ss_pred eccCceEEEecccc
Q psy4987 19 HKKGCQVFFFCNFH 32 (299)
Q Consensus 19 ~~~~~~~~~~~~~~ 32 (299)
.|.||..|||=.++
T Consensus 3 ~k~~CknffWK~~t 16 (18)
T PF03002_consen 3 RKAGCKNFFWKTFT 16 (18)
T ss_pred ccccccceeecccc
Confidence 37899999997764
No 20
>COG4466 Veg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.93 E-value=74 Score=24.83 Aligned_cols=24 Identities=8% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEEeeccccCCC--ceEEEEcCCCC
Q psy4987 72 ADLYQFSFNIQCYVK--FQVEYAFPPLI 97 (299)
Q Consensus 72 ~~vFvv~FD~~~~~G--n~IEwsyP~~~ 97 (299)
..+|++++|-+. | .++.|+|...+
T Consensus 45 pSvFIiel~~d~--~~~~~vSYsYsDIL 70 (80)
T COG4466 45 PSVFIIELDQDE--GNFERVSYSYSDIL 70 (80)
T ss_pred CcEEEEEecccC--CCceEEEEEehhhe
Confidence 468999999999 9 78889997543
No 21
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=23.21 E-value=2.8e+02 Score=22.10 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCc-hhhHHHHHHHHhccccccccCCCCCCCcccCCHH--HHHHHHHHhHHHHHHHh
Q psy4987 184 YGHVQVKMALITHAYFEEGDFSK-VSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSAR--ELILKFRHNALLLFKLL 257 (299)
Q Consensus 184 f~~l~~~L~~~~~ayF~q~d~~~-~~iLe~~~~~ln~~~~~~~~~~~~~~~~~~lsL~--~lv~~fg~~il~LwKl~ 257 (299)
+..-.+.|+.+.+.||.++|... .++|+.+++.+...+ . ++. ++++.||+.+...++.+
T Consensus 10 ~E~W~~~Le~As~~y~~~~n~~~m~~~L~pLh~~l~k~P----------e-----T~~E~~F~~~fg~~L~~A~~~~ 71 (100)
T PF08771_consen 10 HELWYEALEEASRLYFGENNVEKMFKILEPLHEMLEKGP----------E-----TLREVSFAQAFGRDLQEAREWL 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-----------S-----SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCC----------C-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 44557889999999998887653 366677777765521 0 233 36777777776666554
Done!