Query psy4987
Match_columns 299
No_of_seqs 135 out of 306
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:54:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tw8_A DENN domain-containing 99.1 9.2E-11 3.2E-15 113.8 9.4 171 86-286 29-219 (391)
2 3v42_A Folliculin; tumor suppr 39.5 27 0.00093 31.0 4.2 52 238-289 8-60 (226)
3 3fap_B FRAP, FKBP12-rapamycin 21.0 2.3E+02 0.0077 21.5 6.0 55 188-257 10-67 (94)
4 1tr0_A Stable protein 1; plant 17.1 18 0.00062 27.5 -1.1 70 1-81 1-73 (108)
5 2ab9_A Pro-SFTI-1; protein, be 11.1 99 0.0034 18.5 1.2 14 110-123 17-30 (31)
6 3nrf_A APAG protein; structura 10.6 3.1E+02 0.011 21.5 4.3 60 72-153 24-88 (106)
7 2npu_A FKBP12-rapamycin comple 10.5 5.6E+02 0.019 20.4 6.0 37 183-219 35-72 (126)
8 3fmb_A Dimeric protein of unkn 9.7 1E+02 0.0035 24.0 1.2 35 37-81 50-84 (118)
9 3bb5_A Stress responsive alpha 9.2 89 0.003 24.3 0.7 38 37-81 46-83 (121)
10 1d0d_A TAP, anticoagulant prot 9.1 1.6E+02 0.0054 20.4 1.8 19 17-35 27-45 (60)
No 1
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.14 E-value=9.2e-11 Score=113.78 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=125.1
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCC----CCeEEEEecCCCCCCCeEEEEEEEEecchhhhhc
Q psy4987 86 KFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYE----EDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKN 161 (299)
Q Consensus 86 Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~----eD~vyF~lp~~~~~~~~lYGiS~fRQi~~~~l~~ 161 (299)
++.|.++||++.++ +...+.||-.|+|+|..... ..+..|++-. .+++..||.+- + ..
T Consensus 29 ~p~i~~~fP~~~~d--------~~~l~~ip~FCfP~~~~~~~~~~~~~~fsFVLTd--~dG~r~yg~Cr-~-~~------ 90 (391)
T 3tw8_A 29 DPVVLWKFPEDFGD--------QEILQSVPKFCFPFDVERVSQNQVGQHFTFVLTD--IESKQRFGFCR-L-TS------ 90 (391)
T ss_dssp CCEEEEEESTTCCC--------HHHHHHHHHHHSCSCHHHHGGGCCSEEEEEEEEC--TTSCEEEEEEE-E-CT------
T ss_pred CCeeeEeCCCCccc--------chhhhccccccCCCccccCccCCCCceEEEEEec--CCCCEEEEEEE-c-cC------
Confidence 67899999985432 23567899999999988443 3346677743 34578899664 2 11
Q ss_pred CCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccc---cCCC-------C-
Q psy4987 162 QTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIE---DLSN-------A- 230 (299)
Q Consensus 162 r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~~---~~~~-------~- 230 (299)
+ -+|++|+||+.|+|+.++.-|..+.+.+++... ..+|.+.+.+.+++-+.. .... .
T Consensus 91 -~-------~~k~icilS~lp~f~~F~k~L~~l~~~~~~~~~----~~le~~~~~l~~~P~P~pG~~v~l~~~~~~~~P~ 158 (391)
T 3tw8_A 91 -G-------GTICLCILSYLPWFEVYYKLLNTLADYLAKELE----NDLNETLRSLYNHPVPKANTPVNLSVHSYFIAPD 158 (391)
T ss_dssp -T-------SSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHSCCCCSCC--------------
T ss_pred -C-------CceEEEEEeCChHHHHHHHHHHHHHHHHhcCCc----hHHHHHHHHHhhCCCCCCCCeEEEeccceeeCCC
Confidence 1 259999999999999999999999998886442 567888888888764421 0000 0
Q ss_pred -CCC-cc--cCCHHHHHHHHHH-hHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchh
Q psy4987 231 -PQL-FV--GLSARELILKFRH-NALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPS 286 (299)
Q Consensus 231 -~~~-~~--~lsL~~lv~~fg~-~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~ 286 (299)
..+ .. ..++..+++.++. +++.||.++|||+||+|+++..+.++..+.|+.+||-+
T Consensus 159 ~~~Lp~~~~~~~~~~Lf~~L~~~~il~l~~~~LlE~rIl~~S~~~~~Ls~~~~al~~Ll~P 219 (391)
T 3tw8_A 159 VTGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYP 219 (391)
T ss_dssp --CCCCBTTSHHHHHHHHHSCHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCCCCCCHHHHHHhCCHHHHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcC
Confidence 000 00 1146678999985 89999999999999999999999999999999998755
No 2
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=39.45 E-value=27 Score=31.02 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHhHH-HHHHHhccCCceeeecCCCcchhhHHHHHhhcchhHHh
Q psy4987 238 SARELILKFRHNAL-LLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIE 289 (299)
Q Consensus 238 sL~~lv~~fg~~il-~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~l~ 289 (299)
||+++.+-+|..-| .|--.+|.+--|+|-++++..++.++.+|-+|+|.-..
T Consensus 8 SLr~l~~vlG~~~F~~l~~~vl~GnQiIVrg~~~~~~~s~~~~L~~lLP~~c~ 60 (226)
T 3v42_A 8 SLRHMRQVLGAPSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTMLPVGCV 60 (226)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHGGGSCGGGC
T ss_pred HHHHHHHHHChHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHhCCHHHH
Confidence 89999999987666 78888999999999999998888888899999997543
No 3
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=21.01 E-value=2.3e+02 Score=21.50 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCCCCc-hhhHHHHHHHHhccccccccCCCCCCCcccCCHHH--HHHHHHHhHHHHHHHh
Q psy4987 188 QVKMALITHAYFEEGDFSK-VSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARE--LILKFRHNALLLFKLL 257 (299)
Q Consensus 188 ~~~L~~~~~ayF~q~d~~~-~~iLe~~~~~ln~~~~~~~~~~~~~~~~~~lsL~~--lv~~fg~~il~LwKl~ 257 (299)
.+.|+.+.+.||.++|... .++|+-+++.+.+.+ .++.+ +.+.||+.+.-.+..+
T Consensus 10 ~e~LeeAsr~~f~~~n~~~m~~~L~pLh~~l~~~p---------------eT~~E~sF~~~fG~~L~~A~~~~ 67 (94)
T 3fap_B 10 HEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGP---------------QTLKETSFNQAYGRDLMEAQEWC 67 (94)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---------------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC---------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999887643 355666666665421 13333 6666776655554443
No 4
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=17.10 E-value=18 Score=27.53 Aligned_cols=70 Identities=17% Similarity=0.329 Sum_probs=40.4
Q ss_pred CCccccceEEEEEEeeeeeccCc-eEEEeccccCCCCccccccccccccCCCCCCCCCc--ccCCCCCcceeceEEEEEE
Q psy4987 1 MSETEENIILHVLVVGFHHKKGC-QVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPE--NCKRGHREVLIGLADLYQF 77 (299)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~vFvv 77 (299)
|+++..+.|-|++..-|-..-.. |+.-++. +-++.+|.+|||..+-..+...+| ...+ +..-++++
T Consensus 1 m~~~~~~mi~HiVlfklk~~~~~~~~~~~~~----~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~-------~~d~~l~~ 69 (108)
T 1tr0_A 1 MATRTPKLVKHTLLTRFKDEITREQIDNYIN----DYTNLLDLIPSMKSFNWGTDLGMESAELNR-------GYTHAFES 69 (108)
T ss_dssp --CCCCCCEEEEEEEEECTTCCHHHHHHHHH----HHHHHHHHCTTCCEEEEEECCSCSCTTTTT-------TCCEEEEE
T ss_pred CCCCCCCcEEEEEEEEECCCCCHHHHHHHHH----HHHHHhhcCCceEEEEEccCCCccccccCC-------CccEEEEE
Confidence 66666667888877666433211 2222222 225678899999988766666544 2111 34566777
Q ss_pred eecc
Q psy4987 78 SFNI 81 (299)
Q Consensus 78 ~FD~ 81 (299)
+|+-
T Consensus 70 ~F~s 73 (108)
T 1tr0_A 70 TFES 73 (108)
T ss_dssp EESS
T ss_pred EECC
Confidence 8874
No 5
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=11.15 E-value=99 Score=18.51 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=11.7
Q ss_pred cccCCCccccCCCC
Q psy4987 110 EWKYLPTLALPDGS 123 (299)
Q Consensus 110 ~~~~LpfkALPDG~ 123 (299)
+-+.||-.++|||-
T Consensus 17 ctksippicfpdgr 30 (31)
T 2ab9_A 17 CTKSIPPICFPDGR 30 (31)
T ss_dssp CCSSSSCSSSSCCC
T ss_pred ecccCCCcccCCCC
Confidence 56789999999984
No 6
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=10.65 E-value=3.1e+02 Score=21.46 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=35.8
Q ss_pred EEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCcccc-CCCCC----CCCCCeEEEEecCCCCCCCeEE
Q psy4987 72 ADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLAL-PDGSH----NYEEDTVYFHLPSLTDSKKTVF 146 (299)
Q Consensus 72 ~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkAL-PDG~H----~~~eD~vyF~lp~~~~~~~~lY 146 (299)
-.++-.+||+.- ..+.+. +.+++.+||+|+ |+|-- .++++..+=.+ .+.+..=
T Consensus 24 k~~ytktFdV~v-------------aNl~~~-----~idLsk~C~~a~~~~gkef~ldTVde~L~~g~l----k~g~~vk 81 (106)
T 3nrf_A 24 KHFRTQAFKVRL-------------VNAAKS-----EISLKNSCLVAQSAAGQSFRLDTVDEELTADTL----KPGASVE 81 (106)
T ss_dssp EEEEEEEEEEEE-------------ECCSSS-----CEECTTCEEEEEETTSCEEEEEEECGGGGCSEE----CTTCEEE
T ss_pred eeEEEEEEEEEE-------------ecCCCC-----ccccchhhheeeCcCCCEEEecccchhhhhccc----cCCCcee
Confidence 356778888753 123333 367999999999 77752 11222222222 2356788
Q ss_pred EEEEEEe
Q psy4987 147 GISCFRQ 153 (299)
Q Consensus 147 GiS~fRQ 153 (299)
|++.|--
T Consensus 82 G~avFaS 88 (106)
T 3nrf_A 82 GDAIFAS 88 (106)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9999964
No 7
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=10.48 E-value=5.6e+02 Score=20.36 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCc-hhhHHHHHHHHhc
Q psy4987 183 LYGHVQVKMALITHAYFEEGDFSK-VSLLKDTYHHLNS 219 (299)
Q Consensus 183 ~f~~l~~~L~~~~~ayF~q~d~~~-~~iLe~~~~~ln~ 219 (299)
.+..-.+.|+.+.+.||.++|... .+.|+.+++.+++
T Consensus 35 W~E~W~e~LeeASrlyf~~~n~~~m~~~L~pLh~~l~~ 72 (126)
T 2npu_A 35 WHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMER 72 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHcc
Confidence 467779999999999999887642 3455555555543
No 8
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=9.74 E-value=1e+02 Score=23.97 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=24.2
Q ss_pred ccccccccccccCCCCCCCCCcccCCCCCcceeceEEEEEEeecc
Q psy4987 37 ESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNI 81 (299)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vFvv~FD~ 81 (299)
++.+|.+|||..+-..+...++. +-.-+++++|+-
T Consensus 50 ~~L~~~IP~i~~~~vG~~~s~~~----------~yd~~l~~~F~s 84 (118)
T 3fmb_A 50 EALPAKISVIRKIEVGLNMNPGE----------TWNIALYSEFDN 84 (118)
T ss_dssp HTGGGTCTTCSEEEEEECCCTTC----------CCCEEEEEEESS
T ss_pred HHhhccCCCeEEEEEeccCCCCC----------CceEEEEEEECC
Confidence 46678999999877666544321 566778888874
No 9
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=9.16 E-value=89 Score=24.33 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=26.5
Q ss_pred ccccccccccccCCCCCCCCCcccCCCCCcceeceEEEEEEeecc
Q psy4987 37 ESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNI 81 (299)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vFvv~FD~ 81 (299)
+..++.+|||..+-..+...+|...+ +-.-+|+++|+=
T Consensus 46 ~~L~~~ip~i~~~~~G~~~s~e~~~~-------g~~~~l~~~F~s 83 (121)
T 3bb5_A 46 DGLAPELPGLTEFRHGPNRDFEQKSE-------RYPYGFLCTFTD 83 (121)
T ss_dssp HHHGGGCTTEEEEEEEEBCCTTSSCT-------TCCEEEEEEESS
T ss_pred HHHHhcCCCeEEEEECCCCCccccCC-------CeeEEEEEEECC
Confidence 56788999999987777766653221 345677888874
No 10
>1d0d_A TAP, anticoagulant protein; factor XA inhibitor, kunitz inhibitor, blood clotting inhibitor; 1.62A {Ornithodoros moubata} SCOP: g.8.1.2 PDB: 1kig_I 1tap_A 1tcp_A
Probab=9.14 E-value=1.6e+02 Score=20.37 Aligned_cols=19 Identities=32% Similarity=0.784 Sum_probs=14.5
Q ss_pred eeeccCceEEEeccccCCC
Q psy4987 17 FHHKKGCQVFFFCNFHNSG 35 (299)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ 35 (299)
=|-|+||+-|+-|--...|
T Consensus 27 ~~~k~~c~~fwicpe~~~g 45 (60)
T 1d0d_A 27 RNGKGGCDSFWICPEDHTG 45 (60)
T ss_dssp ECSSSSEEEEEECTTTCCS
T ss_pred cCCCCCCCcceECCccCCC
Confidence 4789999999999654433
Done!