Query psy4987
Match_columns 299
No_of_seqs 135 out of 306
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 22:54:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3fapb_ a.24.7.1 (B:) FKBP12-r 23.4 89 0.0065 21.9 6.0 55 187-256 9-66 (94)
2 d1g6oa_ c.37.1.11 (A:) Hexamer 19.3 34 0.0025 29.2 3.4 38 250-287 156-193 (323)
3 d1wjva1 g.37.1.2 (A:1-35) Cell 14.5 26 0.0019 20.5 0.9 15 24-41 8-22 (35)
4 d1d0da_ g.8.1.2 (A:) Anticoagu 9.3 73 0.0053 20.4 1.8 19 17-35 27-45 (60)
5 d1urha2 c.46.1.2 (A:149-268) 3 6.3 1.6E+02 0.011 20.0 2.8 23 259-281 81-103 (120)
6 d1nm3a1 c.47.1.1 (A:166-239) C 6.1 1.6E+02 0.012 18.5 2.6 23 259-281 3-25 (74)
7 d2hg6a1 d.364.1.1 (A:1-106) Hy 5.9 1.1E+02 0.008 21.7 1.6 18 14-31 18-35 (106)
8 d1q4ra_ d.58.4.4 (A:) Hypothet 5.5 44 0.0032 23.2 -0.9 39 36-81 26-64 (103)
9 d1tg6a1 c.14.1.1 (A:1-193) Clp 5.0 1.2E+02 0.009 23.4 1.5 22 256-277 21-43 (193)
10 d1jyoe_ d.184.1.2 (E:) Virulen 4.8 4.6E+02 0.033 18.3 4.5 52 165-221 4-56 (102)
No 1
>d3fapb_ a.24.7.1 (B:) FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.41 E-value=89 Score=21.95 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhcCCCCc-hhhHHHHHHHHhccccccccCCCCCCCcccCCHHH--HHHHHHHhHHHHHHH
Q psy4987 187 VQVKMALITHAYFEEGDFSK-VSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARE--LILKFRHNALLLFKL 256 (299)
Q Consensus 187 l~~~L~~~~~ayF~q~d~~~-~~iLe~~~~~ln~~~~~~~~~~~~~~~~~~lsL~~--lv~~fg~~il~LwKl 256 (299)
-.+.|+.+.++||.++|... .++|+-+++.+.+.+ .++.| +.+.||..+.--+..
T Consensus 9 W~e~LeeAsr~y~~~~n~~~m~~~L~pLhe~L~k~P---------------eT~~E~sF~q~fG~~L~eA~~~ 66 (94)
T d3fapb_ 9 WHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGP---------------QTLKETSFNQAYGRDLMEAQEW 66 (94)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---------------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHccCC---------------CCHHHHHHHHHHhHHHHHHHHH
Confidence 36789999999999887643 355666666665431 13333 666666655554444
No 2
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=19.34 E-value=34 Score=29.19 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchhH
Q psy4987 250 ALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSM 287 (299)
Q Consensus 250 il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~ 287 (299)
.-.||.++-.++.|||.++..+=-++++-+|+..||+.
T Consensus 156 ~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 156 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 34688888899999999988887888888999999874
No 3
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.48 E-value=26 Score=20.51 Aligned_cols=15 Identities=67% Similarity=0.957 Sum_probs=11.2
Q ss_pred eEEEeccccCCCCccccc
Q psy4987 24 QVFFFCNFHNSGGESVKG 41 (299)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~ 41 (299)
-|||-||- -|||+|-
T Consensus 8 MVfFtCn~---CGEs~KK 22 (35)
T d1wjva1 8 MVFFTCNA---CGESVKK 22 (35)
T ss_dssp CCEEEESS---SCCEEET
T ss_pred EEEEEcch---hHHHHhH
Confidence 47888975 6888873
No 4
>d1d0da_ g.8.1.2 (A:) Anticoagulant protein, factor Xa inhibitor {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=9.29 E-value=73 Score=20.42 Aligned_cols=19 Identities=32% Similarity=0.784 Sum_probs=14.5
Q ss_pred eeeccCceEEEeccccCCC
Q psy4987 17 FHHKKGCQVFFFCNFHNSG 35 (299)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ 35 (299)
=|-|+||+-|+-|--...|
T Consensus 27 ~~~k~~c~~fwicpe~~~g 45 (60)
T d1d0da_ 27 RNGKGGCDSFWICPEDHTG 45 (60)
T ss_dssp ECSSSSEEEEEECTTTCCS
T ss_pred cCCCCCCCcceECCccCCC
Confidence 4789999999999654433
No 5
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=6.30 E-value=1.6e+02 Score=20.05 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=17.9
Q ss_pred cCCceeeecCCCcchhhHHHHHh
Q psy4987 259 LERKCVFYCSPVKPLCSTILSLL 281 (299)
Q Consensus 259 L~kRILv~s~~~~~~c~~vlsLl 281 (299)
..++|++|+.+...+|...++|-
T Consensus 81 ~~~~ii~yC~sG~~A~~~~~~L~ 103 (120)
T d1urha2 81 YDKPIIVSCGSGVTAAVVLLALA 103 (120)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHH
T ss_pred ccCceEEEccchhHHHHHHHHHH
Confidence 46899999998888877666553
No 6
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=6.13 E-value=1.6e+02 Score=18.54 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=16.9
Q ss_pred cCCceeeecCCCcchhhHHHHHh
Q psy4987 259 LERKCVFYCSPVKPLCSTILSLL 281 (299)
Q Consensus 259 L~kRILv~s~~~~~~c~~vlsLl 281 (299)
.+++|.||+.+.-..|..+-.++
T Consensus 3 ~~~~I~iYs~~~C~~C~~ak~lL 25 (74)
T d1nm3a1 3 VQESISIFTKPGCPFCAKAKQLL 25 (74)
T ss_dssp CCCCEEEEECSSCHHHHHHHHHH
T ss_pred CcCcEEEEECCCCHHHHHHHHHH
Confidence 36889999988777777655544
No 7
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.87 E-value=1.1e+02 Score=21.73 Aligned_cols=18 Identities=33% Similarity=0.526 Sum_probs=14.5
Q ss_pred EeeeeeccCceEEEeccc
Q psy4987 14 VVGFHHKKGCQVFFFCNF 31 (299)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (299)
.||||.|+|--+.-|-..
T Consensus 18 FVGfn~K~G~~ivRFSED 35 (106)
T d2hg6a1 18 FVGFNRKTGRYIVRFSED 35 (106)
T ss_dssp EEEEETTTTEEEEESCGG
T ss_pred cccccccCceEEEEeccc
Confidence 589999999888777654
No 8
>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.50 E-value=44 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=25.5
Q ss_pred CccccccccccccCCCCCCCCCcccCCCCCcceeceEEEEEEeecc
Q psy4987 36 GESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNI 81 (299)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vFvv~FD~ 81 (299)
.++.++.+|||+.+-..+.+..+....| -.-.++++|+-
T Consensus 26 l~~L~~~ip~i~~~~~G~~~~~~~~~~~-------y~~~l~~~F~s 64 (103)
T d1q4ra_ 26 YANLVNLIEPMKAFHWGKDVSIENLHQG-------YTHIFESTFES 64 (103)
T ss_dssp HHTHHHHCTTCCEEEEEECCCSSSCSTT-------CCEEEEEEESC
T ss_pred HHHhhhhCceeEEEEeccccCCcccCCC-------ccEEEEEEECC
Confidence 3457889999999988887766543322 23345566663
No 9
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=4.97 E-value=1.2e+02 Score=23.44 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=15.1
Q ss_pred HhccCCceeeecCCCc-chhhHH
Q psy4987 256 LLLLERKCVFYCSPVK-PLCSTI 277 (299)
Q Consensus 256 l~LL~kRILv~s~~~~-~~c~~v 277 (299)
..|+++||++.+.+.. ..++.+
T Consensus 21 s~l~~~Riifl~g~I~~~~~~~~ 43 (193)
T d1tg6a1 21 SRLLRERIVCVMGPIDDSVASLV 43 (193)
T ss_dssp HHHHTTTEEEEESSBCHHHHHHH
T ss_pred HHHhccCEEEECCEEchHHHHHH
Confidence 4567999999998764 344433
No 10
>d1jyoe_ d.184.1.2 (E:) Virulence effector SptP domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.78 E-value=4.6e+02 Score=18.28 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=36.3
Q ss_pred Ccccccee-EEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q psy4987 165 DLTRNTVQ-KSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCL 221 (299)
Q Consensus 165 ~v~Rs~VQ-KSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~ 221 (299)
.+.|..++ |-+..|+++|.|... .+.+.|-++-...+..+|+-|...+....
T Consensus 4 ~VA~egfkekllt~L~hvPLlKn~-----daVqky~e~~r~qNqk~L~vFl~aLt~ry 56 (102)
T d1jyoe_ 4 YVAPEKFSSKVLTWLGKMPLFKNT-----EVVQKHTENIRVQDQKILQTFLHALTEKY 56 (102)
T ss_dssp EECSSCBTTBCEEEEECCCCTTCH-----HHHHHHHHHSCCSCHHHHHHHHHHHHHTT
T ss_pred chhhhhHHHHHHHHHhcChhhhhh-----HHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 34455555 778889999998764 34566667777777888888877776544
Done!