RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4987
(299 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 6e-07
Identities = 61/411 (14%), Positives = 118/411 (28%), Gaps = 168/411 (40%)
Query: 5 EENIILH--------VLVV------GFHHKKGCQVFFFCNFHNSGGESVKGTLPGILAL- 49
+N+++ + + K ++F+ N N S + L + L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNC--NSPETVLEMLQKLL 206
Query: 50 -------------PYSPPLPPENCK---------RGHREVLIGLADLYQF----SFNIQC 83
+ L + + + + L+ L ++ +FN+ C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 84 -------------------YVKFQVEYAFPPLIEGTSSESNECPSEW-----KYLPTLA- 118
+++ L T E ++ + LP
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 119 -------------LPDGSHNYEEDTVYFHLPSLTDSKKTVFGIS-----------CFRQ- 153
+ DG ++ + H+ D T+ S F +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDN---WKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 154 --------IPVEKLKNQTADLTRNTVQKSVCVL------------STVPLYG-HVQVKM- 191
IP L D+ ++ V V L ST+ + ++++K+
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 192 ---------ALITHAY-----FEEGDFSKVSLLKDTY------HHLNSCLSQIEDLSNAP 231
+++ H Y F+ D L D Y HHL + E ++
Sbjct: 439 LENEYALHRSIVDH-YNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNI-EHPERMT--- 491
Query: 232 QLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLS 282
LF R + L FR F LE+K + + S +IL+ L
Sbjct: 492 -LF-----RMVFLDFR------F----LEQK-IRHDSTAWNASGSILNTLQ 525
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 66/327 (20%), Positives = 100/327 (30%), Gaps = 101/327 (30%)
Query: 1 MSETEENIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILAL---PYSPPLPP 57
+ET +I L +G + + N P L P S PL
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEW--LEN------PSNTPDKDYLLSIPISCPL-- 240
Query: 58 ENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPP-----LIEGTSSESNECPSEWK 112
IG+ Q + YV F P ++G + S +
Sbjct: 241 -----------IGV---IQLA----HYVVTAKLLGFTPGELRSYLKGATGHS-------Q 275
Query: 113 YLPT---LALPDGSHNYEED-----TVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTA 164
L T +A D ++ TV F + G+ C+ P
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFI-----------GVRCYEAYPN-------T 317
Query: 165 DLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCL--- 221
L + ++ S+ VP M I++ E+ ++D + NS L
Sbjct: 318 SLPPSILEDSLENNEGVPSP------MLSISNLTQEQ--------VQDYVNKTNSHLPAG 363
Query: 222 SQIE-DLSNAPQLFV--G--LSARELILKFRH----NALLLFKLLLLERKCVFYCS--PV 270
Q+E L N + V G S L L R + L ++ ERK F PV
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 271 K-PLCSTILSLLSLHPSMIETGLAKST 296
P S LL +I L K+
Sbjct: 424 ASPFHS---HLLVPASDLINKDLVKNN 447
Score = 28.9 bits (64), Expect = 2.5
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 168 RNTVQKSVCVLSTVPLYGHVQ---VKMALI------THAYFEEGDFSKVSL--LKDTYHH 216
R ++ S L+ V ++ I T YFEE L L TYH
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-------LRDLYQTYHV 182
Query: 217 LNSCLSQIEDL-SNAPQLFVGLSA 239
L + DL + + L
Sbjct: 183 L------VGDLIKFSAETLSELIR 200
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase,
guanine exchange factor; 2.10A {Homo sapiens}
Length = 391
Score = 34.6 bits (78), Expect = 0.029
Identities = 36/218 (16%), Positives = 66/218 (30%), Gaps = 28/218 (12%)
Query: 79 FNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTV-YFHLPS 137
F++ VK P++ E + +P P ++ V
Sbjct: 14 FDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQVGQHFTFV 73
Query: 138 LTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHA 197
LTD + C + +C+LS +P + + +
Sbjct: 74 LTDIESKQRFGFCRL---------------TSGGTICLCILSYLPWFEVYYKLLNTLADY 118
Query: 198 YFEEGDFSKVSLLKDTYHH--------LNSCLSQIEDLSNAPQLFVGLSARELILKFRH- 248
+E + L+ Y+H +N + + L +R L F
Sbjct: 119 LAKELENDLNETLRSLYNHPVPKANTPVNLSVHSYFIAPDVTGLPTIPESRNLTEYFVAV 178
Query: 249 ---NALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSL 283
N L L+ +L ER+ V S + L + I +L
Sbjct: 179 DVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAAL 216
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 27.4 bits (59), Expect = 7.3
Identities = 4/54 (7%), Positives = 18/54 (33%)
Query: 124 HNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCV 177
+ ++T+ +L ++ + + + V ++ + C+
Sbjct: 1435 RDSNKNTLIIYLDKVSHTVEDCLSFKVHQYFNVGLIQPGAVKVYSYYNLDETCI 1488
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,416,451
Number of extensions: 246411
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 5
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)