BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy499
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QXL8|NDK7_MOUSE Nucleoside diphosphate kinase 7 OS=Mus musculus GN=Nme7 PE=2 SV=1
Length = 395
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
E A+ LRP T+RA++G+ V+NAVH TDLPED E
Sbjct: 350 EIARHLRPETLRAIFGKTKVQNAVHCTDLPEDGLLE 385
>sp|Q5E9Y9|NDK7_BOVIN Nucleoside diphosphate kinase 7 OS=Bos taurus GN=NME7 PE=2 SV=1
Length = 377
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
E A+ LRP T+RA++G+ ++NAVH TDLPED E
Sbjct: 332 EIARHLRPGTLRAIFGKTKIQNAVHCTDLPEDGLLE 367
>sp|Q9Y5B8|NDK7_HUMAN Nucleoside diphosphate kinase 7 OS=Homo sapiens GN=NME7 PE=1 SV=1
Length = 376
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
E A+ LRP T+RA++G+ ++NAVH TDLPED E
Sbjct: 331 EIARHLRPGTLRAIFGKTKIQNAVHCTDLPEDGLLE 366
>sp|Q9QXL7|NDK7_RAT Nucleoside diphosphate kinase 7 OS=Rattus norvegicus GN=Nme7 PE=1
SV=1
Length = 395
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
E A+ LRP T+RA +G+ V+NAVH TDLPED E
Sbjct: 350 EIARHLRPETLRANFGKTKVQNAVHCTDLPEDGLLE 385
>sp|O67528|NDK_AQUAE Nucleoside diphosphate kinase OS=Aquifex aeolicus (strain VF5)
GN=ndk PE=1 SV=1
Length = 142
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
E A+++ PN+IRA +G + +NA+H +D PE A +E
Sbjct: 96 EEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYE 131
>sp|Q6MGU4|NDK_BDEBA Nucleoside diphosphate kinase OS=Bdellovibrio bacteriovorus (strain
ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=ndk PE=3
SV=1
Length = 141
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDA------FFEFGKQCKL 74
K+ P T+RA +G N ENAVH +D PE A FFE + C +
Sbjct: 96 KKANPGTVRAKFGDNVGENAVHGSDSPESAARELALFFEKHEICNV 141
>sp|Q95YJ5|TXND3_CIOIN Thioredoxin domain-containing protein 3 homolog OS=Ciona
intestinalis GN=CiIC3 PE=2 SV=1
Length = 653
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 29 FYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
F AKE P+++RA+YG ++ NA+H + E+A E G
Sbjct: 249 FDAAVAKEENPDSLRAIYGTDATSNALHGSSSTEEAVRELG 289
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVH 56
E AKE P ++RAM+ ++ +ENA+H
Sbjct: 550 EVAKESHPESLRAMFAKSILENAIH 574
>sp|B8IZ74|NDK_DESDA Nucleoside diphosphate kinase OS=Desulfovibrio desulfuricans
(strain ATCC 27774 / DSM 6949) GN=ndk PE=3 SV=1
Length = 139
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
+ P T+RA YG++ NAVH +D E A FE G
Sbjct: 96 QAEPGTLRARYGQSLEANAVHGSDAQETAAFEIG 129
>sp|C0QS47|NDK_PERMH Nucleoside diphosphate kinase OS=Persephonella marina (strain DSM
14350 / EX-H1) GN=ndk PE=3 SV=1
Length = 140
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
+E T+R +YG N ENAVH +D PE A E
Sbjct: 96 EEAEEGTLRKLYGTNVGENAVHGSDSPESAKVEI 129
>sp|P90666|TXND3_HELCR Thioredoxin domain-containing protein 3 homolog OS=Heliocidaris
crassispina GN=NME8 PE=1 SV=1
Length = 837
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 34 AKELRPNTIRAMYGRNSVENAVHVTDLPEDA 64
A+E P ++RA+ G++ ++NAVH + PE+A
Sbjct: 584 AREHAPESLRALLGKDVLQNAVHGSSNPEEA 614
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
E AKE P+++RA +G + NA+H D E A E
Sbjct: 298 EVAKEEAPDSLRAQFGTDKKMNAMHGADSKETAAREMA 335
>sp|A7I644|NDK_METB6 Nucleoside diphosphate kinase OS=Methanoregula boonei (strain 6A8)
GN=ndk PE=3 SV=1
Length = 150
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFGKQCK 73
+E P TIR +G + N +H +D PE A E G K
Sbjct: 94 QEAAPGTIRGDFGIDIGRNVIHASDSPESAAREIGIHFK 132
>sp|Q715S9|TXND3_RAT Thioredoxin domain-containing protein 3 OS=Rattus norvegicus
GN=Nme8 PE=2 SV=2
Length = 587
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVH 56
E AK L PN++RA YG + + NAVH
Sbjct: 540 EEAKLLSPNSLRARYGIDVLRNAVH 564
>sp|Q7VEG3|NDK_PROMA Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain
SARG / CCMP1375 / SS120) GN=ndk PE=3 SV=2
Length = 151
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
E P TIR G N N +H +D PE A FE
Sbjct: 97 EAEPGTIRGDLGINIGRNVIHGSDGPETASFEI 129
>sp|Q056E8|NDK_LEPBL Nucleoside diphosphate kinase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=ndk PE=3 SV=1
Length = 137
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
KE TIRA+Y + NAVH +D E+A E
Sbjct: 94 KEAAAGTIRALYAESKEANAVHGSDSDENAALE 126
>sp|Q04P86|NDK_LEPBJ Nucleoside diphosphate kinase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=ndk PE=3 SV=1
Length = 137
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
KE TIRA+Y + NAVH +D E+A E
Sbjct: 94 KEAAAGTIRALYAESKEANAVHGSDSDENAALE 126
>sp|Q4JAV3|NDK_SULAC Nucleoside diphosphate kinase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=ndk PE=3 SV=1
Length = 145
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
KE P TIR Y + EN +H +D E A E G
Sbjct: 96 KEASPGTIRGDYALSKSENVIHASDSEEKAKTEMG 130
>sp|A5GPE9|NDK_SYNPW Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803)
GN=ndk PE=3 SV=1
Length = 152
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
E P TIR N N +H +D PE A FE G
Sbjct: 97 EAEPGTIRGDLAINIGRNVIHGSDAPETAQFEIG 130
>sp|B3E3P0|NDK_GEOLS Nucleoside diphosphate kinase OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=ndk PE=3 SV=1
Length = 138
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + +N EN+ H +D PE A FE
Sbjct: 98 PGTIRKEFAKNIEENSSHGSDAPETAAFE 126
>sp|Q7U3S1|NDK_SYNPX Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102)
GN=ndk PE=3 SV=1
Length = 151
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
E P TIR N N +H +D PE A FE G
Sbjct: 96 EAEPGTIRGDLAVNIGRNVIHGSDAPETAEFEIG 129
>sp|Q0I6J3|NDK_SYNS3 Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311)
GN=ndk PE=3 SV=1
Length = 152
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
E P TIR N N +H +D PE A FE G
Sbjct: 97 EAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIG 130
>sp|A9GF63|NDK_SORC5 Nucleoside diphosphate kinase OS=Sorangium cellulosum (strain So
ce56) GN=ndk PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
TIR +YG N ENAVH +D P A E
Sbjct: 100 AGTIRKLYGANVGENAVHGSDKPATAAREI 129
>sp|B8GKL6|NDK_METPE Nucleoside diphosphate kinase OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=ndk PE=3 SV=1
Length = 149
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
E P TIR YG + N +H +D PE A E
Sbjct: 95 EAAPGTIRGDYGLDIGRNVIHASDAPESAAREI 127
>sp|Q99MH5|NDK5_MOUSE Nucleoside diphosphate kinase homolog 5 OS=Mus musculus GN=Nme5
PE=2 SV=2
Length = 211
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 33 TAKELRPNTIRAMYGRNSVENAVHVTD 59
AKE P+++RA+YG + + NA+H ++
Sbjct: 104 VAKETHPDSLRAIYGTDELRNALHGSN 130
>sp|A3DMR9|NDK_STAMF Nucleoside diphosphate kinase OS=Staphylothermus marinus (strain
ATCC 43588 / DSM 3639 / F1) GN=ndk PE=3 SV=1
Length = 141
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 34 AKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
+E P TIR Y + +N VH +D PE A E
Sbjct: 95 GREAPPGTIRGDYSLSKSQNVVHASDSPESAMREI 129
>sp|P56597|NDK5_HUMAN Nucleoside diphosphate kinase homolog 5 OS=Homo sapiens GN=NME5
PE=2 SV=1
Length = 212
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 33 TAKELRPNTIRAMYGRNSVENAVHVTD 59
AKE P+++RA+YG + + NA+H ++
Sbjct: 104 VAKETHPDSLRAIYGTDDLRNALHGSN 130
>sp|A8LIX8|NDK_DINSH Nucleoside diphosphate kinase OS=Dinoroseobacter shibae (strain DFL
12) GN=ndk PE=3 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
P TIRA + + EN+VH +D PE A E
Sbjct: 100 PGTIRAEFAESVGENSVHGSDAPETAAVEI 129
>sp|Q3AVV5|NDK_SYNS9 Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902)
GN=ndk PE=3 SV=1
Length = 151
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
E P TIR N N +H +D PE A FE G
Sbjct: 96 ESEPGTIRGDLAVNIGRNVIHGSDAPETAEFEIG 129
>sp|Q603C1|NDK_METCA Nucleoside diphosphate kinase OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=ndk PE=3 SV=1
Length = 143
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDA------FFEFGKQC 72
++ P TIRA + + ENAVH +D PE A FFE + C
Sbjct: 96 RDAAPGTIRADFAVSIDENAVHGSDGPETAAQEIAYFFESDELC 139
>sp|Q5LQP4|NDK_RUEPO Nucleoside diphosphate kinase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=ndk PE=3 SV=1
Length = 140
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
P TIRA + + EN+VH +D PE A E
Sbjct: 100 PGTIRAEFAESVGENSVHGSDAPETAAVEI 129
>sp|A8FBR0|ADDB_BACP2 ATP-dependent helicase/deoxyribonuclease subunit B OS=Bacillus
pumilus (strain SAFR-032) GN=addB PE=3 SV=2
Length = 1169
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 16 PDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFGKQCKLL 75
P+ N S +F+ AK L+PN + +YG + + + AF F
Sbjct: 754 PNRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFASH---- 809
Query: 76 KITLKLTEKRPLWTFESP-IGQVLSLSLTCLQNPM 109
LKL + R + E+P IGQ+ +L + + +
Sbjct: 810 --GLKLKD-RQFYKLEAPDIGQLFHSALKHISDTL 841
>sp|Q3SL74|NDK_THIDA Nucleoside diphosphate kinase OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=ndk PE=3 SV=1
Length = 142
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
K+ P TIRA + + NAVH +D PE A E
Sbjct: 96 KKAEPGTIRADFAESIDANAVHGSDAPETAAVEIA 130
>sp|Q3AFJ7|NDK_CARHZ Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1
Length = 149
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 38 RPNTIRAMYGRNSVENAVHVTDLPEDAFFE---FGKQCKLL 75
+P TIR YG + N +H +D PE A E F K+ +LL
Sbjct: 97 QPGTIRGTYGIDVGRNVIHGSDSPESAAREIALFFKEEELL 137
>sp|C0QBA3|NDK_DESAH Nucleoside diphosphate kinase OS=Desulfobacterium autotrophicum
(strain ATCC 43914 / DSM 3382 / HRM2) GN=ndk PE=3 SV=1
Length = 138
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
KE TIR + + +N VH +D PE A FE G
Sbjct: 94 KEAEEGTIRRDFATDIEKNVVHGSDAPETAAFEIG 128
>sp|Q5L6Z2|NDK_CHLAB Nucleoside diphosphate kinase OS=Chlamydophila abortus (strain
S26/3) GN=ndk PE=3 SV=1
Length = 141
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEF 68
+E P TIRA +G + NAVH +D E+A E
Sbjct: 94 QEAAPGTIRAQFGESIGINAVHGSDSLENAAIEI 127
>sp|Q3A2Z3|NDK_PELCD Nucleoside diphosphate kinase OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=ndk PE=3 SV=1
Length = 137
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
T+R +G + NAVH +D PE A FE G
Sbjct: 98 AGTLRKEFGTSLGRNAVHGSDAPETAAFEVG 128
>sp|Q8EYP5|NDK_LEPIN Nucleoside diphosphate kinase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=ndk
PE=3 SV=1
Length = 137
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
KE TIRA+Y + NAVH +D ++A E
Sbjct: 94 KEAAAGTIRALYAESKEANAVHGSDSDDNAALE 126
>sp|Q72M65|NDK_LEPIC Nucleoside diphosphate kinase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=ndk PE=3 SV=1
Length = 137
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
KE TIRA+Y + NAVH +D ++A E
Sbjct: 94 KEAAAGTIRALYAESKEANAVHGSDSDDNAALE 126
>sp|Q1GI26|NDK_RUEST Nucleoside diphosphate kinase OS=Ruegeria sp. (strain TM1040)
GN=ndk PE=3 SV=1
Length = 140
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDA 64
P TIRA + + EN+VH +D PE A
Sbjct: 100 PGTIRAEFAESVGENSVHGSDAPETA 125
>sp|Q39S70|NDK_GEOMG Nucleoside diphosphate kinase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=ndk PE=3 SV=1
Length = 137
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 40 NTIRAMYGRNSVENAVHVTDLPEDAFFE---FGKQCKLL 75
TIR +G + EN VH +D PE A FE F Q +LL
Sbjct: 99 GTIRKEFGLSIEENTVHGSDSPESAAFEIPYFFSQLELL 137
>sp|Q164H3|NDK_ROSDO Nucleoside diphosphate kinase OS=Roseobacter denitrificans (strain
ATCC 33942 / OCh 114) GN=ndk PE=3 SV=1
Length = 140
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDA 64
P TIRA + + EN+VH +D PE A
Sbjct: 100 PGTIRAEFAESVGENSVHGSDAPETA 125
>sp|A2STK8|NDK_METLZ Nucleoside diphosphate kinase OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=ndk PE=3 SV=1
Length = 149
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFG 69
E P TIR Y + +N +H D PE A E G
Sbjct: 95 EANPGTIRGDYALSIGKNVIHAADSPESAAREIG 128
>sp|A6LCB6|NDK_PARD8 Nucleoside diphosphate kinase OS=Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC 11152) GN=ndk PE=3 SV=1
Length = 153
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFEFGK 70
P TIR Y + EN VH +D PE A E +
Sbjct: 98 PGTIRGDYSMSVQENIVHASDSPETAEIELKR 129
>sp|A3DDC2|NDK_CLOTH Nucleoside diphosphate kinase OS=Clostridium thermocellum (strain
ATCC 27405 / DSM 1237) GN=ndk PE=3 SV=1
Length = 136
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 38 RPNTIRAMYGRNSVENAVHVTDLPEDAFFEFGK 70
+P TIR YG + EN +H +D E A E +
Sbjct: 97 KPGTIRGDYGYHRFENLIHASDSCESAEIEIKR 129
>sp|Q7VWK7|NDK_BORPE Nucleoside diphosphate kinase OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=ndk PE=3 SV=1
Length = 141
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
K+ P TIRA + + NAVH +D PE A E
Sbjct: 96 KKAAPGTIRADFADSIDANAVHGSDAPETAAVE 128
>sp|Q7W6P4|NDK_BORPA Nucleoside diphosphate kinase OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=ndk PE=3 SV=1
Length = 141
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
K+ P TIRA + + NAVH +D PE A E
Sbjct: 96 KKAAPGTIRADFADSIDANAVHGSDAPETAAVE 128
>sp|Q7WHM7|NDK_BORBR Nucleoside diphosphate kinase OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=ndk PE=3 SV=1
Length = 141
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
K+ P TIRA + + NAVH +D PE A E
Sbjct: 96 KKAAPGTIRADFADSIDANAVHGSDAPETAAVE 128
>sp|Q2KY86|NDK_BORA1 Nucleoside diphosphate kinase OS=Bordetella avium (strain 197N)
GN=ndk PE=3 SV=1
Length = 141
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
K+ P TIRA + + NAVH +D PE A E
Sbjct: 96 KKAAPGTIRADFADSIDANAVHGSDAPETAAVE 128
>sp|Q92A79|NDK_LISIN Nucleoside diphosphate kinase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=ndk PE=3 SV=1
Length = 147
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 36 ELRPNTIRAMYGRNSVENAVHVTDLPEDA------FFE 67
E P TIRA Y ++ N +H +D PE A FFE
Sbjct: 95 EADPGTIRAEYAIHTNRNVIHGSDSPESAKREIQLFFE 132
>sp|Q1IXQ0|NDK_DEIGD Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain
DSM 11300) GN=ndk PE=3 SV=2
Length = 138
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE---FGKQCKLLK 76
P TIRA + + EN H +D PE A E F ++ +LLK
Sbjct: 98 PGTIRADFATTTGENVTHGSDSPESAARELSLFFREDELLK 138
>sp|Q715T0|TXND3_MOUSE Thioredoxin domain-containing protein 3 OS=Mus musculus GN=Nme8
PE=2 SV=1
Length = 586
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 32 ETAKELRPNTIRAMYGRNSVENAVH 56
E AK L P ++RA YG + + NAVH
Sbjct: 539 EEAKLLSPESLRAKYGLDILRNAVH 563
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,958,478
Number of Sequences: 539616
Number of extensions: 1690937
Number of successful extensions: 3840
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3780
Number of HSP's gapped (non-prelim): 65
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)