Query psy499
Match_columns 122
No_of_seqs 127 out of 1129
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:57:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02931 nucleoside diphosphat 99.9 1.9E-26 4.1E-31 177.9 5.3 84 1-84 72-174 (177)
2 cd04415 NDPk7A Nucleoside diph 99.9 1.9E-26 4.1E-31 169.5 4.6 72 1-72 41-131 (131)
3 cd04414 NDPk6 Nucleoside dipho 99.9 3.2E-26 6.9E-31 168.7 4.9 73 1-73 44-135 (135)
4 PRK14542 nucleoside diphosphat 99.9 2.6E-26 5.6E-31 170.3 4.3 74 1-77 44-136 (137)
5 cd04418 NDPk5 Nucleoside dipho 99.9 4E-26 8.6E-31 167.6 4.9 73 1-73 41-132 (132)
6 PTZ00093 nucleoside diphosphat 99.9 2.5E-26 5.5E-31 172.2 3.7 80 1-84 45-143 (149)
7 PRK14541 nucleoside diphosphat 99.9 6.9E-26 1.5E-30 168.4 4.2 75 1-78 44-137 (140)
8 PRK14545 nucleoside diphosphat 99.9 1.2E-25 2.5E-30 166.8 4.4 73 1-76 46-137 (139)
9 PRK14543 nucleoside diphosphat 99.9 1.5E-25 3.2E-30 171.9 4.9 87 1-91 48-168 (169)
10 PLN02619 nucleoside-diphosphat 99.9 1.2E-25 2.6E-30 180.4 3.8 87 1-91 131-236 (238)
11 cd04412 NDPk7B Nucleoside diph 99.9 1.7E-25 3.8E-30 164.2 4.3 72 1-72 43-134 (134)
12 cd04416 NDPk_TX NDP kinase dom 99.9 3.6E-25 7.8E-30 161.8 4.9 72 1-72 42-132 (132)
13 PRK14540 nucleoside diphosphat 99.9 3.3E-25 7.2E-30 163.2 4.2 71 1-74 45-134 (134)
14 cd00595 NDPk Nucleoside diphos 99.9 5.1E-25 1.1E-29 160.8 4.8 72 1-72 43-133 (133)
15 PRK00668 ndk mulitfunctional n 99.9 5.8E-25 1.2E-29 161.3 3.9 71 1-74 44-133 (134)
16 COG0105 Ndk Nucleoside diphosp 99.9 5.1E-25 1.1E-29 163.9 2.9 71 1-74 45-134 (135)
17 KOG0888|consensus 99.9 1E-24 2.3E-29 165.8 2.6 89 1-90 48-155 (156)
18 cd04413 NDPk_I Nucleoside diph 99.9 2.8E-24 6.1E-29 156.9 3.9 69 1-72 43-130 (130)
19 PF00334 NDK: Nucleoside dipho 99.9 5.2E-24 1.1E-28 155.0 4.5 73 2-77 44-135 (135)
20 smart00562 NDK These are enzym 99.9 4.7E-23 1E-27 150.1 4.7 73 1-76 43-134 (135)
21 PRK14544 nucleoside diphosphat 99.8 6.9E-22 1.5E-26 153.4 4.1 61 15-78 112-182 (183)
22 COG1325 Predicted exosome subu 22.4 90 0.002 24.0 2.7 25 52-76 13-37 (149)
No 1
>PLN02931 nucleoside diphosphate kinase family protein
Probab=99.93 E-value=1.9e-26 Score=177.89 Aligned_cols=84 Identities=26% Similarity=0.215 Sum_probs=77.1
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||++|||+||..|+...|+|||++||++.++|+||||||+
T Consensus 72 ~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~ 151 (177)
T PLN02931 72 RASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSP 151 (177)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCH
Confidence 47899999999888 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhcc
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEK 84 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~ 84 (122)
++|.+||+|||+.+...+...+.
T Consensus 152 e~A~~Ei~~fF~~~~~~~~~~~~ 174 (177)
T PLN02931 152 ESAEREISFFFGDVSSGDVASQH 174 (177)
T ss_pred HHHHHHHHHhCCccccccccccc
Confidence 99999999999987765444333
No 2
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=99.93 E-value=1.9e-26 Score=169.45 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||++|||+||..|+...|+|||++||.+.++|+||||||+
T Consensus 41 ~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~ 120 (131)
T cd04415 41 EAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSV 120 (131)
T ss_pred HHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCH
Confidence 47899999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q psy499 62 EDAFFEFGKQC 72 (122)
Q Consensus 62 EsA~rEi~fFF 72 (122)
|+|.+||+|||
T Consensus 121 e~a~~Ei~~fF 131 (131)
T cd04415 121 ASAARELEFFF 131 (131)
T ss_pred HHHHHHHHhhC
Confidence 99999999998
No 3
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=99.92 E-value=3.2e-26 Score=168.67 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=70.7
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||++|||+||..|+...|+|||++||++.++|+||||||+
T Consensus 44 ~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~naV~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~ 123 (135)
T cd04414 44 DAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSP 123 (135)
T ss_pred HHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCHHHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCH
Confidence 37899999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q psy499 62 EDAFFEFGKQCK 73 (122)
Q Consensus 62 EsA~rEi~fFFp 73 (122)
++|.+||+||||
T Consensus 124 e~A~~Ei~~fF~ 135 (135)
T cd04414 124 ASAQREIALFFP 135 (135)
T ss_pred HHHHHHHHhcCC
Confidence 999999999997
No 4
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=99.92 E-value=2.6e-26 Score=170.27 Aligned_cols=74 Identities=24% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||+|||||||..| .|+|||++||.+.++|+||||||+
T Consensus 44 ~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~~A---~p~siR~~fg~~~~~N~vH~Sds~ 120 (137)
T PRK14542 44 DAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEA---AAGTIRALYAESKEANAVHGSDSD 120 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCchhC---CCCCchHHhcCcccceeEECCCCH
Confidence 37899999999998 99999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHhcCCCccc
Q psy499 62 EDAFFEFGKQCKLLKI 77 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~ 77 (122)
++|.+||+|||+..++
T Consensus 121 e~A~~Ei~~fF~~~~~ 136 (137)
T PRK14542 121 ANAALEISFFFKGNEL 136 (137)
T ss_pred HHHHHHHHHcCChhhc
Confidence 9999999999997654
No 5
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=99.92 E-value=4e-26 Score=167.60 Aligned_cols=73 Identities=25% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..+.| |+|+|+.||++|||+||+.|+...|+|||++||.+.++|+||||||+
T Consensus 41 ~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~ 120 (132)
T cd04418 41 QCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSF 120 (132)
T ss_pred HHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHHHHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCH
Confidence 47899999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q psy499 62 EDAFFEFGKQCK 73 (122)
Q Consensus 62 EsA~rEi~fFFp 73 (122)
++|.+||+||||
T Consensus 121 ~~a~~Ei~~fF~ 132 (132)
T cd04418 121 SSAEREIRFMFP 132 (132)
T ss_pred HHHHHHHHhcCC
Confidence 999999999997
No 6
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=99.92 E-value=2.5e-26 Score=172.21 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=73.5
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+||+||+.|..++| |+|||+.||+||||+||.+| .|+|||++||++.++|+||||||+
T Consensus 45 ~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~NavH~Sds~ 121 (149)
T PTZ00093 45 IAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLES---APGTIRGDFCVDVGRNVIHGSDSV 121 (149)
T ss_pred HHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHhCCCCcccc---CCCcchhhhccccccceeecCCCH
Confidence 47899999999998 89999999999999999987 799999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhcc
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEK 84 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~ 84 (122)
++|.+||+|||+..+++ +|...
T Consensus 122 e~A~~Ei~~fF~~~~~~-~~~~~ 143 (149)
T PTZ00093 122 ESAKREIALWFKPEELV-SWTSH 143 (149)
T ss_pred HHHHHHHHHhCChhhcc-Ccccc
Confidence 99999999999987776 44433
No 7
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=99.92 E-value=6.9e-26 Score=168.36 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=70.8
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||++||||||..| .|+|||++||++.++|+||||||+
T Consensus 44 ~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vHgSds~ 120 (140)
T PRK14541 44 TAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEA---AEGTVRKLYADSKGENIVHGSDSA 120 (140)
T ss_pred HHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcHHHHHHHHhCCCCchhC---CCCCchHHhcccccceeEECCCCH
Confidence 47899999999999 99999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHhcCCCccch
Q psy499 62 EDAFFEFGKQCKLLKIT 78 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~ 78 (122)
++|.+||+|||+..+.+
T Consensus 121 e~A~~Ei~~fF~~~~~~ 137 (140)
T PRK14541 121 ENAAIEAGFFFSAEEVV 137 (140)
T ss_pred HHHHHHHHHcCChhhhc
Confidence 99999999999986654
No 8
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=99.92 E-value=1.2e-25 Score=166.84 Aligned_cols=73 Identities=26% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||.+|..++| |+|||+.||++|||+||++| .|+|||++||++.++|+||||||+
T Consensus 46 ~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vH~Sds~ 122 (139)
T PRK14545 46 DAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENAVEDFRTLIGATNPADA---AEGTIRKKYAKSIGENAVHGSDSD 122 (139)
T ss_pred HHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCHHHHHHHHhCCCCcccC---CCCChhHHhcccccceeEECCCCH
Confidence 47899999999998 89999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHhcCCCcc
Q psy499 62 EDAFFEFGKQCKLLK 76 (122)
Q Consensus 62 EsA~rEi~fFFp~~~ 76 (122)
++|.+||+|||+..+
T Consensus 123 e~A~~Ei~~fF~~~~ 137 (139)
T PRK14545 123 ENAQIEGAFHFAGRE 137 (139)
T ss_pred HHHHHHHHHhCCccc
Confidence 999999999999765
No 9
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=99.92 E-value=1.5e-25 Score=171.86 Aligned_cols=87 Identities=21% Similarity=0.135 Sum_probs=79.7
Q ss_pred CCcchhh-----hCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccC-------
Q psy499 1 MAEPFLE-----THPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRN------- 49 (122)
Q Consensus 1 ~~~~~~~-----~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d------- 49 (122)
+|++||. +|..++| |+|||+.||+|||||||..| .|+|||++||++
T Consensus 48 ~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl~g~naI~~~R~l~Gpt~p~~a---~p~tIR~~fg~~~~~~~~~ 124 (169)
T PRK14543 48 MAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEPKLA---IPGTIRGDFSYHSFNYANE 124 (169)
T ss_pred HHHHHhccCccccccCCchHHHHHHHHccCCeEEEEEECCCHHHHHHHHhCCCCcccc---CCCcchhhhcccccccccc
Confidence 4789995 7888888 99999999999999999877 799999999997
Q ss_pred ---CCcceEEecCCHHHHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 50 ---SVENAVHVTDLPEDAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 50 ---~~rNaVHgSDs~EsA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
.++|+||||||+|+|.|||+||||+.+.. +|......|.|.
T Consensus 125 ~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 168 (169)
T PRK14543 125 KGFSVYNVIHASANEDDALREIPIWFKDNEIL-TYKRDDECEHYY 168 (169)
T ss_pred cccceeeEEECCCCHHHHHHHHHHhCCccccc-ccccccceeEee
Confidence 79999999999999999999999999987 788888889875
No 10
>PLN02619 nucleoside-diphosphate kinase
Probab=99.91 E-value=1.2e-25 Score=180.36 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=80.0
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+||+||++|..++| |+|+|+.||+|||||||.+| .|+|||++||++.++|+||||||+
T Consensus 131 ~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~GenaV~~~R~LiGpTdP~~A---~PgTIRg~fG~~~~rNaVHgSDS~ 207 (238)
T PLN02619 131 FAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGP 207 (238)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCcccc---CCCcchhhhcccccceeeecCCCH
Confidence 47999999999999 99999999999999999877 799999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
|+|.+||+|||+..+++ +|+.....|+|.
T Consensus 208 EsA~rEI~~fF~~~ei~-~y~~~~~~~~y~ 236 (238)
T PLN02619 208 ETAKDEINLWFKPEELV-SYTSNAEKWIYG 236 (238)
T ss_pred HHHHHHHHHhCCHHhcc-CCcccchhhhcc
Confidence 99999999999988887 677677777764
No 11
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=99.91 E-value=1.7e-25 Score=164.21 Aligned_cols=72 Identities=43% Similarity=0.509 Sum_probs=69.3
Q ss_pred CCcchhhhCCCC-CC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCC
Q psy499 1 MAEPFLETHPKD-TF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDL 60 (122)
Q Consensus 1 ~~~~~~~~~~~~-~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs 60 (122)
+|++||++|..+ +| |+|||++||++|||+||..|+...|+|||++||++.++|+||||||
T Consensus 43 ~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~nav~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds 122 (134)
T cd04412 43 NAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDL 122 (134)
T ss_pred HHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCC
Confidence 478999999998 66 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy499 61 PEDAFFEFGKQC 72 (122)
Q Consensus 61 ~EsA~rEi~fFF 72 (122)
+++|.+||+|||
T Consensus 123 ~~~A~~e~~~fF 134 (134)
T cd04412 123 PEDGPLELKFFF 134 (134)
T ss_pred HHHHHHHHHhhC
Confidence 999999999998
No 12
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=99.91 E-value=3.6e-25 Score=161.80 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=69.5
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||+.|..++| |+|||+.||++|||+||..|+...|+|||++||.+.++|+||||||+
T Consensus 42 ~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~ 121 (132)
T cd04416 42 QAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSA 121 (132)
T ss_pred HHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCH
Confidence 37899999999987 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q psy499 62 EDAFFEFGKQC 72 (122)
Q Consensus 62 EsA~rEi~fFF 72 (122)
++|.+||+|||
T Consensus 122 ~~a~~Ei~~fF 132 (132)
T cd04416 122 EEAEKEIDFFF 132 (132)
T ss_pred HHHHHHHHHhC
Confidence 99999999998
No 13
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=99.91 E-value=3.3e-25 Score=163.24 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||++|||+||+.| .|+|||++||.+.++|+||||||+
T Consensus 45 ~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~N~vH~Sds~ 121 (134)
T PRK14540 45 MAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEA---EPGTIRGDFGLYTPANIIHASDSK 121 (134)
T ss_pred HHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCChHHHHHHHhCCCCcccC---CCCcchhhhcccccceeEECCCCH
Confidence 58999999999998 99999999999999999988 699999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy499 62 EDAFFEFGKQCKL 74 (122)
Q Consensus 62 EsA~rEi~fFFp~ 74 (122)
++|.+||+|||+.
T Consensus 122 ~~a~~E~~~fF~~ 134 (134)
T PRK14540 122 ESAEREIKLFFGE 134 (134)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999974
No 14
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=99.91 E-value=5.1e-25 Score=160.79 Aligned_cols=72 Identities=28% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|.-++| |+|||+.||+++||+||..|+...|+|||++||.+.++|+||||||+
T Consensus 43 ~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~ 122 (133)
T cd00595 43 QAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSV 122 (133)
T ss_pred HHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChHHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCH
Confidence 47899999998888 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q psy499 62 EDAFFEFGKQC 72 (122)
Q Consensus 62 EsA~rEi~fFF 72 (122)
++|.+||+|||
T Consensus 123 ~~a~~Ei~~~F 133 (133)
T cd00595 123 ESAAREIAFFF 133 (133)
T ss_pred HHHHHHHHhhC
Confidence 99999999998
No 15
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=99.90 E-value=5.8e-25 Score=161.27 Aligned_cols=71 Identities=27% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||++|||+||.+| .|+|||++||++.++|+||||||+
T Consensus 44 ~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~nav~~~r~l~Gp~~p~~a---~p~siR~~~g~~~~~N~vH~sds~ 120 (134)
T PRK00668 44 LAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEA---APGTIRGDFALSIGENVVHGSDSP 120 (134)
T ss_pred HHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchHHHHHHHHhCCCCcccc---CCCcchhhhccccccccEECCCCH
Confidence 47899999999988 89999999999999999876 799999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy499 62 EDAFFEFGKQCKL 74 (122)
Q Consensus 62 EsA~rEi~fFFp~ 74 (122)
++|.+||+||||+
T Consensus 121 ~~a~~Ei~~fF~~ 133 (134)
T PRK00668 121 ESAAREIALFFSE 133 (134)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999986
No 16
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=99.90 E-value=5.1e-25 Score=163.90 Aligned_cols=71 Identities=25% Similarity=0.215 Sum_probs=68.6
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+||.||.+|+.++| |+|||+.||.+||+|||..| +|||||++||.+..+|+||||||+
T Consensus 45 ~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~ai~~~R~l~GaTnp~~A---~pGTIRgdfa~~~~~N~vHgSDs~ 121 (135)
T COG0105 45 LAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANA---APGTIRGDFALSVGENVVHGSDSP 121 (135)
T ss_pred HHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhHHHHHHHHHCCCCcccC---CCCeEeeehhcccCcceEEccCCH
Confidence 38999999999999 99999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy499 62 EDAFFEFGKQCKL 74 (122)
Q Consensus 62 EsA~rEi~fFFp~ 74 (122)
|+|+|||+|||++
T Consensus 122 esA~rEIa~~F~~ 134 (135)
T COG0105 122 ESAEREIALFFSK 134 (135)
T ss_pred HHHhHHhhhccCC
Confidence 9999999999975
No 17
>KOG0888|consensus
Probab=99.90 E-value=1e-24 Score=165.78 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=80.6
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
++|+||.+|-.++| |.|||+.||+++|||++..|+..+|+|||++||++.+||++|||||.
T Consensus 48 ~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~ 127 (156)
T KOG0888|consen 48 LLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSV 127 (156)
T ss_pred HHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcH
Confidence 47899999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhccCCccee
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEKRPLWTF 90 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~~~~~~~ 90 (122)
++|+|||++||+.++.. .|......|.+
T Consensus 128 ~sA~rEi~~~F~~~e~~-~~~~~~~~~~~ 155 (156)
T KOG0888|consen 128 ESAEREIKLWFPEFELV-VYESQPERWLY 155 (156)
T ss_pred HHHHHHHHhcCchhhhe-ecccchhhhhc
Confidence 99999999999998887 44445555544
No 18
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=99.89 E-value=2.8e-24 Score=156.92 Aligned_cols=69 Identities=23% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||++|..++| |+|||+.||++|||+||+.| .|+|||++||++.++|+||||||+
T Consensus 43 ~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav~~~r~l~Gp~~~~~a---~p~slR~~~G~~~~~NavH~sd~~ 119 (130)
T cd04413 43 LAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADA---APGTIRGDFALSIGRNIVHGSDSV 119 (130)
T ss_pred HHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHHHHHHHHhCCCCcccc---CCCCchhhhcccccccceECCCCH
Confidence 47899999998888 89999999999999999977 799999999999999999999999
Q ss_pred HHHHHHHHhcC
Q psy499 62 EDAFFEFGKQC 72 (122)
Q Consensus 62 EsA~rEi~fFF 72 (122)
++|.+||+|||
T Consensus 120 ~~a~~E~~~fF 130 (130)
T cd04413 120 ESAEREIALWF 130 (130)
T ss_pred HHHHHHHHhhC
Confidence 99999999998
No 19
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=99.89 E-value=5.2e-24 Score=154.97 Aligned_cols=73 Identities=33% Similarity=0.379 Sum_probs=64.6
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||..|..+.| |+|||.+||+|+||+||++| .|+|||++||.+.++|+||||||++
T Consensus 44 a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av~~~r~l~Gp~dp~~a---~p~slR~~~g~~~~~N~vH~sd~~~ 120 (135)
T PF00334_consen 44 AREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAVEKWRQLCGPTDPEEA---APGSLRARYGTDIIRNAVHGSDSPE 120 (135)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSGGGS---STTSHHHHH-SSSTG-SEEE-SSHH
T ss_pred HheEEEeecCCcceecccceeecCCcEEEEeecchhhHHHHHhcCCcchhhh---ccccchhceeecCCCCeEECCCCHH
Confidence 6889999999887 99999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccc
Q psy499 63 DAFFEFGKQCKLLKI 77 (122)
Q Consensus 63 sA~rEi~fFFp~~~~ 77 (122)
+|.|||+||||..++
T Consensus 121 ~a~rE~~~~F~~~~~ 135 (135)
T PF00334_consen 121 DAEREIAFFFPEFEI 135 (135)
T ss_dssp HHHHHHHHHSTGGGS
T ss_pred HHHHHHHHcCCcccC
Confidence 999999999998653
No 20
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=99.87 E-value=4.7e-23 Score=150.12 Aligned_cols=73 Identities=29% Similarity=0.269 Sum_probs=67.4
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||+.|..+.| |+|||+.||+++||++|..+ .|+|||++||.+.++|+|||||++
T Consensus 43 ~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav~~~r~l~Gp~~~~~~---~p~slR~~~G~~~~~N~vH~sd~~ 119 (135)
T smart00562 43 LAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREA---APGTIRGDFGLDIGRNAVHGSDSP 119 (135)
T ss_pred HHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHHHHHHHHhCCCChhhc---CCcchHHhhcccccceeEECCCCH
Confidence 37889999988777 89999999999999998555 799999999999999999999999
Q ss_pred HHHHHHHHhcCCCcc
Q psy499 62 EDAFFEFGKQCKLLK 76 (122)
Q Consensus 62 EsA~rEi~fFFp~~~ 76 (122)
++|.+|++||||..+
T Consensus 120 ~~a~~e~~~~F~~~~ 134 (135)
T smart00562 120 ESAEREIALFFPESE 134 (135)
T ss_pred HHHHHHHHHcCCccc
Confidence 999999999999765
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=99.84 E-value=6.9e-22 Score=153.38 Aligned_cols=61 Identities=28% Similarity=0.180 Sum_probs=56.9
Q ss_pred CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCC----------CcceEEecCCHHHHHHHHHhcCCCccch
Q psy499 15 DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNS----------VENAVHVTDLPEDAFFEFGKQCKLLKIT 78 (122)
Q Consensus 15 G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~----------~rNaVHgSDs~EsA~rEi~fFFp~~~~~ 78 (122)
|+|||++||++|||++|..| .|+|||++||.+. ++|+||||||+++|.+||+|||+..+++
T Consensus 112 g~naV~~~R~liGpt~p~~A---~P~TIR~~fg~~~~~~~~~~~~~~~NavH~Sds~e~A~rEi~~fF~~~~~~ 182 (183)
T PRK14544 112 GNRAVEVVRKLVGPTSPHKA---PPGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFREEEIL 182 (183)
T ss_pred CCCHHHHHHHHhCCCCcccc---CCCCchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCChhhcc
Confidence 89999999999999999888 7999999999884 8999999999999999999999976653
No 22
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=22.40 E-value=90 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=22.0
Q ss_pred cceEEecCCHHHHHHHHHhcCCCcc
Q psy499 52 ENAVHVTDLPEDAFFEFGKQCKLLK 76 (122)
Q Consensus 52 rNaVHgSDs~EsA~rEi~fFFp~~~ 76 (122)
+=.||++.+++.+..=|.+|||..-
T Consensus 13 rv~iHaTED~~kV~eAL~~~~p~~~ 37 (149)
T COG1325 13 RVIIHATEDEEKVLEALENFFPEAI 37 (149)
T ss_pred EEEEEccCCHHHHHHHHHHhcCccc
Confidence 4469999999999999999999644
Done!