Query psy499
Match_columns 122
No_of_seqs 127 out of 1129
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:58:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fkx_A NDK B, nucleoside dipho 99.9 4.2E-29 1.4E-33 189.1 4.6 88 2-93 55-161 (161)
2 3ztp_A Nucleoside diphosphate 99.9 7.7E-29 2.6E-33 183.7 4.8 76 2-77 47-141 (142)
3 3r9l_A Nucleoside diphosphate 99.9 8.5E-29 2.9E-33 186.2 5.0 87 1-91 50-155 (155)
4 3q8u_A Nucleoside diphosphate 99.9 1.3E-28 4.3E-33 185.7 3.9 88 2-93 45-151 (157)
5 3fkb_A NDP kinase, NDK, nucleo 99.9 3.4E-28 1.2E-32 182.9 5.6 85 2-91 52-155 (155)
6 4hr2_A Nucleoside diphosphate 99.9 2.1E-28 7.3E-33 182.4 4.1 74 2-78 51-143 (145)
7 3l7u_A Nucleoside diphosphate 99.9 2.2E-28 7.4E-33 187.0 3.6 86 2-91 68-172 (172)
8 1nb2_A Nucleoside diphosphate 99.9 4.1E-28 1.4E-32 181.3 5.0 86 2-91 46-150 (150)
9 3js9_A Nucleoside diphosphate 99.9 5.3E-28 1.8E-32 182.1 4.7 85 2-90 53-156 (156)
10 2vu5_A Nucleoside diphosphate 99.9 5.8E-28 2E-32 180.0 4.4 86 1-90 44-148 (148)
11 1xiq_A Nucleoside diphosphate 99.9 6.9E-28 2.4E-32 181.6 4.7 86 2-91 53-157 (157)
12 3bbb_A Nucleoside diphosphate 99.9 6.1E-28 2.1E-32 180.5 4.3 86 2-91 47-151 (151)
13 1s57_A Nucleoside diphosphate 99.9 6.2E-28 2.1E-32 180.8 3.7 87 1-91 48-153 (153)
14 3mpd_A Nucleoside diphosphate 99.9 1.2E-27 4.1E-32 179.2 4.2 82 2-89 49-150 (151)
15 3b54_A NDK, NDP kinase, nucleo 99.9 9.7E-28 3.3E-32 181.4 3.6 86 2-91 57-161 (161)
16 1zs6_A Nucleoside diphosphate 99.9 1.5E-27 5.3E-32 181.5 4.0 86 2-91 65-169 (169)
17 3evo_A NDP kinase, NDK, nucleo 99.9 2.1E-27 7.3E-32 177.0 4.6 74 2-78 51-143 (146)
18 1pku_A Nucleoside diphosphate 99.9 2.2E-27 7.5E-32 177.3 4.3 85 2-91 46-149 (150)
19 2dxe_A Nucleoside diphosphate 99.9 2.2E-27 7.5E-32 179.0 3.8 86 2-92 51-158 (160)
20 1u8w_A Nucleoside diphosphate 99.9 4E-27 1.4E-31 175.7 5.0 85 2-91 45-148 (149)
21 1wkj_A Nucleoside diphosphate 99.9 4.8E-27 1.6E-31 173.0 5.0 73 2-77 45-136 (137)
22 1w7w_A Nucleoside diphosphate 99.9 3.1E-27 1.1E-31 181.7 4.0 87 1-91 75-180 (182)
23 2hur_A NDK, nucleoside diphosp 99.9 4E-27 1.4E-31 174.4 4.1 74 2-78 46-138 (142)
24 1nhk_R Nucleoside diphosphate 99.9 5.1E-27 1.8E-31 174.3 4.4 74 2-78 46-138 (144)
25 2az3_A Nucleoside diphosphate 99.9 4.4E-27 1.5E-31 178.2 3.9 87 2-92 52-159 (164)
26 4dz6_A Nucleoside diphosphate 99.9 3.9E-27 1.3E-31 182.4 0.6 87 2-92 70-190 (190)
27 1k44_A Nucleoside diphosphate 99.9 2.4E-26 8.3E-31 169.0 4.8 70 2-74 46-135 (136)
28 1ehw_A NDPK H4, nucleoside dip 99.9 4.4E-26 1.5E-30 172.5 5.3 74 2-78 68-160 (162)
29 1xqi_A Nucleoside diphosphate 99.9 2.2E-23 7.5E-28 161.6 0.5 61 15-78 124-194 (195)
30 3bh7_B Protein XRP2; protein-p 99.3 1.8E-13 6E-18 113.8 -1.5 56 1-76 278-347 (352)
31 1go4_E MAD1 (mitotic arrest de 23.9 41 0.0014 23.1 2.1 26 41-67 46-71 (100)
No 1
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=99.95 E-value=4.2e-29 Score=189.13 Aligned_cols=88 Identities=18% Similarity=0.103 Sum_probs=83.2
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||++..+|+||||||+|
T Consensus 55 a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~vHgSDs~e 131 (161)
T 4fkx_A 55 AKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADS---LPGTIRGDFAVDVGRNVCHGSDSVE 131 (161)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred HHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccChHHHHHHHhcCCChhhc---CCCChhHhhCCCccceeEEeCCCHH
Confidence 7899999999999 99999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceeeCC
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFESP 93 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~~~ 93 (122)
+|.+||+|||+..+++ .|......|.|+++
T Consensus 132 sA~rEI~~fF~~~e~~-~~~~~~~~~~ye~~ 161 (161)
T 4fkx_A 132 SAKREIAFWFKAEELV-SWTSHSVKQIYERA 161 (161)
T ss_dssp HHHHHHHHHCCGGGSC-CCCCTTHHHHCSCC
T ss_pred HHHHHHHHcCChhhcc-cccccchhheecCC
Confidence 9999999999998888 78888889998863
No 2
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=99.95 E-value=7.7e-29 Score=183.65 Aligned_cols=76 Identities=30% Similarity=0.392 Sum_probs=73.4
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+|+...|+|||++||.+..+|+||||||+|
T Consensus 47 a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~e 126 (142)
T 3ztp_A 47 AGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPE 126 (142)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHH
T ss_pred HHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHH
Confidence 7899999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccc
Q psy499 63 DAFFEFGKQCKLLKI 77 (122)
Q Consensus 63 sA~rEi~fFFp~~~~ 77 (122)
+|.+||+|||++.++
T Consensus 127 sA~rEi~~fF~~~e~ 141 (142)
T 3ztp_A 127 SAQYEICFIFSGLEI 141 (142)
T ss_dssp HHHHHHHHHCCGGGC
T ss_pred HHHHHHHHcCCcccc
Confidence 999999999998764
No 3
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=99.95 E-value=8.5e-29 Score=186.20 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=59.5
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
.|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+
T Consensus 50 ~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~ 126 (155)
T 3r9l_A 50 LVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAES---APGTIRGDFGIDVGRNIIHGSANL 126 (155)
T ss_dssp ----------------------CCSCCEEEEEESTTHHHHHHHHHCCSCTTTC---CTTSHHHHHCCSSTTCCEEECSSH
T ss_pred HHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCH
Confidence 48999999999988 99999999999999999988 899999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
|+|.+||+|||+..++. .|......|.|+
T Consensus 127 esA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 155 (155)
T 3r9l_A 127 DDAAREIALWFKPEEVA-SWSCSLESHIYE 155 (155)
T ss_dssp HHHHHHHHHHCCSTTCC-------------
T ss_pred HHHHHHHHHcCChHhcc-ccccchhhhhcC
Confidence 99999999999998888 788888888875
No 4
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=99.94 E-value=1.3e-28 Score=185.70 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=82.3
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 45 a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A---~PgtIR~~fg~~~~~N~vHgSDs~e 121 (157)
T 3q8u_A 45 AETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEA---SPGSIRGDLGLTVGRNIIHGSDSLE 121 (157)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred HHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHcCCCChhhc---CCCChHHHhCCCCCCeeEEeCCCHH
Confidence 7899999999999 99999999999999999998 7999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceeeCC
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFESP 93 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~~~ 93 (122)
+|.+||+|||++.+++ .|......|.|+-.
T Consensus 122 sA~rEi~~fF~~~e~~-~~~~~~~~~~~~~~ 151 (157)
T 3q8u_A 122 SAEREINLWFNENEIT-SYASPRDAWLYELE 151 (157)
T ss_dssp HHHHHHHHHCCGGGCC-CCCCTTHHHHCC--
T ss_pred HHHHHHHHcCChHhhc-ccccchHHHHHHHh
Confidence 9999999999999988 88888889988643
No 5
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=99.94 E-value=3.4e-28 Score=182.88 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=77.9
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 52 a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~e 128 (155)
T 3fkb_A 52 AESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLAS---APGSIRGDFGVDVGRNIIGGSDSVE 128 (155)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred HHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHH
Confidence 7899999999999 99999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||+|||+..++. +|.... .|+|+
T Consensus 129 sA~rEi~~fF~~~e~~-~~~~~~-~~~~~ 155 (155)
T 3fkb_A 129 SANREIALWFKPEELL-TEVKPN-PNLYE 155 (155)
T ss_dssp HHHHHHHHHCCGGGSC-SCCCCC-TTSCC
T ss_pred HHHHHHHHcCChhhcc-cccccc-hhhcC
Confidence 9999999999998888 666544 47664
No 6
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=99.94 E-value=2.1e-28 Score=182.40 Aligned_cols=74 Identities=28% Similarity=0.303 Sum_probs=71.2
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 51 a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~tdp~~A---~pgtIR~~fg~~~~~N~vHgSDs~e 127 (145)
T 4hr2_A 51 AEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKA---EKGTIRADFADSIDANAVHGSDAPE 127 (145)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTTTS---CTTSHHHHHCSBTTBCSEEECCSHH
T ss_pred HHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCcHhHHhhccCCCCcccC---CCCCcHHHhcCCcCccceECCCCHH
Confidence 7899999999999 88999999999999999999 6999999999999999999999999
Q ss_pred HHHHHHHhcCCCccch
Q psy499 63 DAFFEFGKQCKLLKIT 78 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~ 78 (122)
+|.+||+||||+++++
T Consensus 128 ~A~rEi~~fF~~~ei~ 143 (145)
T 4hr2_A 128 TARVEIAFFFPEMNVY 143 (145)
T ss_dssp HHHHHHHHHCCGGGCC
T ss_pred HHHHHHHHhCChhhcc
Confidence 9999999999998875
No 7
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.2e-28 Score=186.96 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=80.9
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 68 a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~VHgSDs~e 144 (172)
T 3l7u_A 68 LKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVE 144 (172)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCCGGGCCEEECSSHH
T ss_pred HHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCChhhc---CCCChhHHhcCCCCCcEEEeCCCHH
Confidence 7899999999999 99999999999999999988 7999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||+|||++.+++ .|......|.|+
T Consensus 145 sA~rEI~~fF~~~e~~-~~~~~~~~~~ye 172 (172)
T 3l7u_A 145 SAEKEIGLWFHPEELV-DYTSCAQNWIYE 172 (172)
T ss_dssp HHHHHHHHHCCGGGSC-CCCCTTHHHHCC
T ss_pred HHHHHHHHcCChhhcc-ccccchhhhhcC
Confidence 9999999999998888 777787888774
No 8
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=99.94 E-value=4.1e-28 Score=181.28 Aligned_cols=86 Identities=19% Similarity=0.110 Sum_probs=80.5
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 46 a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e 122 (150)
T 1nb2_A 46 AAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDA---APGTIRGDFGVSAGRNAIHGSDSAG 122 (150)
T ss_dssp HHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTHHHHHHHHHCCSSTTSS---CTTSHHHHSCSCSSSCSEEECSSHH
T ss_pred HHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCHHHHHHHHhCCCCcccC---CCCChHHHhcCCccceeEEeCCCHH
Confidence 7899999999999 99999999999999999887 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||++||++.+.. .|......|.|+
T Consensus 123 sA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 150 (150)
T 1nb2_A 123 SAAKEIGAFFGGGEAA-SGTPAAAADIYG 150 (150)
T ss_dssp HHHHHHHHHSCSSSSC-CCCCTTGGGTCC
T ss_pred HHHHHHHHhCCccccc-cccccchhhhcC
Confidence 9999999999998887 777777888764
No 9
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=99.94 E-value=5.3e-28 Score=182.14 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=79.9
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||++..+|+||||||+|
T Consensus 53 a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~e 129 (156)
T 3js9_A 53 VAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVES---AAGTIRGDFGVVKNFNIVHASSSAE 129 (156)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHH
T ss_pred HHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccchHHHHHHhcCCCCcccc---CCCCHHHHhCCCCCceeEEcCCCHH
Confidence 7899999999999 99999999999999999998 7999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCccee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTF 90 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~ 90 (122)
+|.+||+|||++.+++ .|......|.|
T Consensus 130 sA~rEI~~fF~~~e~~-~~~~~~~~~~~ 156 (156)
T 3js9_A 130 DAARECALWFTPEQLV-TWERSVGGWIY 156 (156)
T ss_dssp HHHHHHHHHSCGGGCC-CCCCTTGGGTC
T ss_pred HHHHHHHHcCChhhcc-cccccchhhcC
Confidence 9999999999998888 77777777765
No 10
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=99.94 E-value=5.8e-28 Score=180.01 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+
T Consensus 44 ~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~ 120 (148)
T 2vu5_A 44 IAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEA---APGTIRGDFGVTVAKNIIHGSDSL 120 (148)
T ss_dssp HHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCCSTTCSEEECSSH
T ss_pred HHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcccc---CCCChHHHhcCCcccceEEeCCCH
Confidence 37899999999998 99999999999999999887 899999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhccCCccee
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEKRPLWTF 90 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~~~~~~~ 90 (122)
|+|.+||++||++.+.. .|......|.|
T Consensus 121 esA~rEi~~fF~~~e~~-~~~~~~~~~~~ 148 (148)
T 2vu5_A 121 ESAEREIGIFFKEEELV-DYSKLMNEWIY 148 (148)
T ss_dssp HHHHHHHHHHCCGGGSC-CCCCGGGGGTC
T ss_pred HHHHHHHHHhCCchhcc-ccccccccccC
Confidence 99999999999988877 66666667764
No 11
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=99.94 E-value=6.9e-28 Score=181.56 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=80.4
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 53 a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~e 129 (157)
T 1xiq_A 53 LKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTS---NTGTIRGDFCLEVSKNVIHGSDSVA 129 (157)
T ss_dssp HHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred HHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecccchHHHHHHcCCCCCCcC---CCCChHHHhCCCCCceeEEeCCCHH
Confidence 7899999999998 89999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||++||++.+.. .|......|.|+
T Consensus 130 sA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 157 (157)
T 1xiq_A 130 SANKEINIWFKAEELT-QWKHHMKEWICS 157 (157)
T ss_dssp HHHHHHHHHCCGGGSC-CCCCGGGGGTCC
T ss_pred HHHHHHHHhCCccccc-cccccchhhhcC
Confidence 9999999999998887 777777788764
No 12
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=99.94 E-value=6.1e-28 Score=180.51 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=79.7
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 47 a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e 123 (151)
T 3bbb_A 47 LKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVK 123 (151)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred HHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCHHHHHHHHhCCCCcccC---CCCCcHHHhcCCcccceEEecCCHH
Confidence 7899999999998 99999999999999999998 5999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||++||+..+.+ .|......|.|+
T Consensus 124 sA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 151 (151)
T 3bbb_A 124 SAEKEISLWFKPEELV-DYKSCAHDWVYE 151 (151)
T ss_dssp HHHHHHHHHCCGGGSC-CCCCTTHHHHCC
T ss_pred HHHHHHHHhCChhhcc-cccccchhhhcC
Confidence 9999999999988887 777777777764
No 13
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=99.94 E-value=6.2e-28 Score=180.79 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=80.3
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+
T Consensus 48 ~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~ 124 (153)
T 1s57_A 48 LAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQA---EPGTIRGDLAVQTGRNIVHGSDSP 124 (153)
T ss_dssp HHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCCEEECSSH
T ss_pred HHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCcccc---CCcchHHHhcCCCcCceEEcCCCH
Confidence 37899999999999 99999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
|+|.+||++||++.+.. .|......|.|+
T Consensus 125 esA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 153 (153)
T 1s57_A 125 ENGKREIGLWFKEGELC-KWDSALATWLRE 153 (153)
T ss_dssp HHHHHHHHHHSCTTCCC-CCCCTTHHHHCC
T ss_pred HHHHHHHHHhCCchhcc-cccccchhhhhC
Confidence 99999999999998887 677777777764
No 14
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=99.94 E-value=1.2e-27 Score=179.17 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=74.5
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 49 a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a---~PgtiR~~fg~~~~~N~vHgSDs~e 125 (151)
T 3mpd_A 49 LETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAA---SVGTIRGDYGVSTGKNIIHGSDCVE 125 (151)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCSSTTCSEEECSSHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCChhhc---CCCChhHHhCCCccceeEEeCCCHH
Confidence 7899999999999 99999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHhcCC-CccchhhhhccCCcce
Q psy499 63 DAFFEFGKQCK-LLKITLKLTEKRPLWT 89 (122)
Q Consensus 63 sA~rEi~fFFp-~~~~~~~~~~~~~~~~ 89 (122)
+|.+||+|||+ ..+.+ .| ....|.
T Consensus 126 sA~rEi~~fF~~~~e~~-~~--~~~~~~ 150 (151)
T 3mpd_A 126 NAEKEIKLWIGDDVQPV-SF--FDKEWI 150 (151)
T ss_dssp HHHHHHHHHTCSCCCCC-CC--TTHHHH
T ss_pred HHHHHHHHhCCCcchhe-ee--cccccc
Confidence 99999999999 77776 44 444454
No 15
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.7e-28 Score=181.36 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=73.5
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| +|+|||++||.+..+|+||||||+|
T Consensus 57 a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e 133 (161)
T 3b54_A 57 LEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGS---APGTIRGDFGIDLGRNVCHGSDSVD 133 (161)
T ss_dssp HHHHCC-------CHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred HHHHHHHHcCCcchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcccC---CCCChHHHhcCCCCCceEEeCCCHH
Confidence 7899999999998 99999999999999999987 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||+|||++.+.. .|......|.|+
T Consensus 134 sA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 161 (161)
T 3b54_A 134 SAEREINLWFKKEELV-DWESNQAKWIYE 161 (161)
T ss_dssp HHHHHHHHHSCSTTCC-CCCCTTHHHHCC
T ss_pred HHHHHHHHhCCchhcc-cccccchhhhcC
Confidence 9999999999998887 777777778764
No 16
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=99.93 E-value=1.5e-27 Score=181.46 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=80.1
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 65 a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~e 141 (169)
T 1zs6_A 65 LREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADA---PPGTIRGDFCIEVGKNLIHGSDSVE 141 (169)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCSEEECSSHH
T ss_pred HHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCchHHHHHHhCCCCcccC---CCCChHHHHcCCCcCceEEecCCHH
Confidence 7899999999999 89999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||++||++.+.. .|......|.|+
T Consensus 142 sA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 169 (169)
T 1zs6_A 142 SARREIALWFRADELL-CWEDSAGHWLYE 169 (169)
T ss_dssp HHHHHHHHHSCGGGSC-CCCCTTHHHHCC
T ss_pred HHHHHHHHhCCchhhh-cccccchhhhcC
Confidence 9999999999998877 777777777764
No 17
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=99.93 E-value=2.1e-27 Score=176.96 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=67.6
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 51 a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~naV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~e 127 (146)
T 3evo_A 51 IEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLAS---APGTIRGDLANDIRENLIHASDSED 127 (146)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCSSSCCSEEECCSHH
T ss_pred HHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCcccC---CCCChHHHhCCCccceeEEeCCCHH
Confidence 7899999999999 99999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccch
Q psy499 63 DAFFEFGKQCKLLKIT 78 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~ 78 (122)
+|.+||+|||+..++.
T Consensus 128 sA~rEi~~fF~~~e~~ 143 (146)
T 3evo_A 128 SAVDEISIWFPETKME 143 (146)
T ss_dssp HHHHHHHHHCC-----
T ss_pred HHHHHHHHcCChhhcC
Confidence 9999999999987664
No 18
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=99.93 E-value=2.2e-27 Score=177.32 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=78.4
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 46 a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~e 122 (150)
T 1pku_A 46 AQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEA---APGTIRADYAVEVGRNVIHGSDSVD 122 (150)
T ss_dssp HHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCSBTTBCSEEECSSHH
T ss_pred HHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccchHHHHHHHhCCCCcccC---CCCChHHHhCCCccceeEEeCCCHH
Confidence 7899999999999 89999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||++|||+ +.. .|......|.|+
T Consensus 123 sA~rEi~~fF~~-e~~-~~~~~~~~~~~~ 149 (150)
T 1pku_A 123 NGKKEIALWFPE-GLA-EWRSNLHPWIYE 149 (150)
T ss_dssp HHHHHHHHHCTT-CCC-CCCCTTHHHHCC
T ss_pred HHHHHHHHhCcH-Hhc-cccccchhhhhc
Confidence 999999999954 555 777777788876
No 19
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=99.93 E-value=2.2e-27 Score=179.04 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=80.4
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCc---ceEEecC
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVE---NAVHVTD 59 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~r---NaVHgSD 59 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+ |+|||||
T Consensus 51 a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~~~~N~vHgSD 127 (160)
T 2dxe_A 51 AEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDA---APGTIRGDFGLEVSDAICNVIHASD 127 (160)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCSSSCCCSEEECS
T ss_pred HHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCHHHHHHHHhCCCCCCcC---CCCChHHHhcCCcccCcCceEEcCC
Confidence 7899999999999 88999999999999999998 899999999999999 9999999
Q ss_pred CHHHHHHHHHhcCCCccchhhhhccCCcceeeC
Q psy499 60 LPEDAFFEFGKQCKLLKITLKLTEKRPLWTFES 92 (122)
Q Consensus 60 s~EsA~rEi~fFFp~~~~~~~~~~~~~~~~~~~ 92 (122)
|+|+|.+||++||++.+.. .| .....|.|+.
T Consensus 128 s~esA~rEi~~fF~~~e~~-~~-~~~~~~~~~~ 158 (160)
T 2dxe_A 128 SKESAEREISLFFKPEELF-EY-PRAADWFYKK 158 (160)
T ss_dssp SHHHHHHHHHHHCCGGGCC-CC-CCTTHHHHCC
T ss_pred CHHHHHHHHHHhCCchhhc-cc-cchhhhHhcc
Confidence 9999999999999998887 66 7788888873
No 20
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=99.93 E-value=4e-27 Score=175.74 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=78.5
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||..| +|+|||++||.+..+|+||||||+|
T Consensus 45 a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~e 121 (149)
T 1u8w_A 45 AEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSDSVE 121 (149)
T ss_dssp HHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCSTTSCSEEECSSHH
T ss_pred HHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCchHHHHHHhCCCCcccC---CCCCcHHHHCCCCcCceEEecCCHH
Confidence 7899999999999 99999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 63 DAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
+|.+||++|||+ +.. .|......|.|+
T Consensus 122 sA~rEi~~fF~~-e~~-~~~~~~~~~~~~ 148 (149)
T 1u8w_A 122 SARKEIALWFPD-GPV-NWQSSVHPWVYE 148 (149)
T ss_dssp HHHHHHHHHCTT-CCC-CCCCTTGGGTSC
T ss_pred HHHHHHHHhCch-hhc-cccccchhhhhc
Confidence 999999999964 555 777778888875
No 21
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=99.93 E-value=4.8e-27 Score=172.98 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=70.0
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 45 a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~e 121 (137)
T 1wkj_A 45 AERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSATLE 121 (137)
T ss_dssp HHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCCSTTCSEEECSSHH
T ss_pred HHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCCCcC---CCCcchHHhCCCcccceEEecCCHH
Confidence 7899999999999 89999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccc
Q psy499 63 DAFFEFGKQCKLLKI 77 (122)
Q Consensus 63 sA~rEi~fFFp~~~~ 77 (122)
+|.+||++||++.++
T Consensus 122 sA~rEi~~fF~~~e~ 136 (137)
T 1wkj_A 122 DAQREIALFFRPEEL 136 (137)
T ss_dssp HHHHHHHHHSCGGGC
T ss_pred HHHHHHHHhCChhhc
Confidence 999999999998664
No 22
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=99.93 E-value=3.1e-27 Score=181.74 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=81.4
Q ss_pred CCcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 1 MAEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 1 ~~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
+|++||.+|..++| |+|||+.||+|||||||.+| +|+|||++||.+..+|+||||||+
T Consensus 75 ~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~ 151 (182)
T 1w7w_A 75 FAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKS---APGTIRGDLAVVVGRNIIHGSDGP 151 (182)
T ss_dssp HHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSH
T ss_pred HHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecccHHHHHHHHhCCCCCCCC---CCCChHHHhCCCccceeEEeCCCH
Confidence 37899999999999 89999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhhccCCcceee
Q psy499 62 EDAFFEFGKQCKLLKITLKLTEKRPLWTFE 91 (122)
Q Consensus 62 EsA~rEi~fFFp~~~~~~~~~~~~~~~~~~ 91 (122)
|+|.+||++||+..++. .|......|.|+
T Consensus 152 esA~rEi~~fF~~~e~~-~~~~~~~~~~~~ 180 (182)
T 1w7w_A 152 ETAKDEIKLWFKPEELV-SFTSNSEKWIYG 180 (182)
T ss_dssp HHHHHHHHHHCCGGGCC-CCCCTTHHHHTC
T ss_pred HHHHHHHHHhCCchhcc-ccccccccceec
Confidence 99999999999988887 777777888876
No 23
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=99.93 E-value=4e-27 Score=174.44 Aligned_cols=74 Identities=22% Similarity=0.174 Sum_probs=71.3
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 46 a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~e 122 (142)
T 2hur_A 46 ARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGSDSVE 122 (142)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTTTS---CTTSHHHHHCSSSTTCSEEECSSHH
T ss_pred HHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCcccC---CCCcchHHhCCCcccceEEeCCCHH
Confidence 7899999999999 88999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccch
Q psy499 63 DAFFEFGKQCKLLKIT 78 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~ 78 (122)
+|.+||++||+..+++
T Consensus 123 sA~rEi~~fF~~~e~~ 138 (142)
T 2hur_A 123 SAAREIAYFFGEGEVC 138 (142)
T ss_dssp HHHHHHHHHCCTTCSC
T ss_pred HHHHHHHHhCCchhhh
Confidence 9999999999988776
No 24
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=99.93 E-value=5.1e-27 Score=174.32 Aligned_cols=74 Identities=23% Similarity=0.220 Sum_probs=71.3
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 46 a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~e 122 (144)
T 1nhk_R 46 AEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSDSLE 122 (144)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGGGC---CTTSHHHHHCCSSSSCSEEECSSHH
T ss_pred HHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCHHHHHHHHhCCCCCCcC---CCCcchHHhCCCCcceeEEeCCCHH
Confidence 7899999999999 88999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccch
Q psy499 63 DAFFEFGKQCKLLKIT 78 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~ 78 (122)
+|.+||++||+..+..
T Consensus 123 sA~rEi~~fF~~~e~~ 138 (144)
T 1nhk_R 123 NAKIEIAYFFRETEIH 138 (144)
T ss_dssp HHHHHHHHHCCGGGCC
T ss_pred HHHHHHHHhCCchhhc
Confidence 9999999999988776
No 25
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=99.93 E-value=4.4e-27 Score=178.22 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=81.4
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 52 a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e 128 (164)
T 2az3_A 52 AHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDA---APGTIRGDYGNDLGHNLIHGSDHED 128 (164)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSSCSEEECCTTS
T ss_pred HHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccccHHHHHHHHhCCCCcccc---CCCcchhhhcccccCceEEecCCcc
Confidence 7899999999999 99999999999999999988 8999999999999999999999999
Q ss_pred --HHHHHHHhcCCCccchhhhhccCCcceeeC
Q psy499 63 --DAFFEFGKQCKLLKITLKLTEKRPLWTFES 92 (122)
Q Consensus 63 --sA~rEi~fFFp~~~~~~~~~~~~~~~~~~~ 92 (122)
+|.+||++||++.+.. .|......|.|++
T Consensus 129 ~gsA~rEi~~fF~~~e~~-~~~~~~~~~~~~~ 159 (164)
T 2az3_A 129 EGANEREIALFFDDDELV-DWDRDASAWVYED 159 (164)
T ss_dssp TTHHHHHHHHHCCTTSSC-CCCCTTHHHHCC-
T ss_pred hhhHHHHHHHcCCchhhc-ccccchHHHHHhh
Confidence 9999999999998877 7777888898873
No 26
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=99.92 E-value=3.9e-27 Score=182.38 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=80.8
Q ss_pred Ccchhh-----hCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCC-------
Q psy499 2 AEPFLE-----THPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNS------- 50 (122)
Q Consensus 2 ~~~~~~-----~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~------- 50 (122)
|++||. +|..++| |+|||+.||+|||||||.+| .|+|||++||.+.
T Consensus 70 a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~GpTdP~~A---~PgTIRg~fg~~~~~~a~~~ 146 (190)
T 4dz6_A 70 AKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLA---IPGTIRGDFSYHSFKYSNEK 146 (190)
T ss_dssp HHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEEEEETHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCHHHHHHH
T ss_pred HHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEEecCCHHHHHHHHcCCCChhhc---CCCChHHHhcCChhhhcccc
Confidence 788999 9998887 89999999999999999999 8999999999999
Q ss_pred ---CcceEEecCCHHHHHHHHHhcCCCccchhhhhccCCcceeeC
Q psy499 51 ---VENAVHVTDLPEDAFFEFGKQCKLLKITLKLTEKRPLWTFES 92 (122)
Q Consensus 51 ---~rNaVHgSDs~EsA~rEi~fFFp~~~~~~~~~~~~~~~~~~~ 92 (122)
++|+||||||+|+|.|||+|||++.+++ +|......|.|.+
T Consensus 147 ~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~-~~~~~~~~~~y~~ 190 (190)
T 4dz6_A 147 GFSIYNVIHASANEADAMREIPIWFKDNEIL-NYKRDDECEHYYC 190 (190)
T ss_dssp TCCCCCSEEECCSHHHHHHHHHHHCCGGGSC-CCCCTTHHHHTCC
T ss_pred ccccceeEEcCCCHHHHHHHHHHcCCcHHhc-cccccchhheecC
Confidence 9999999999999999999999999988 7887888887753
No 27
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=99.92 E-value=2.4e-26 Score=169.05 Aligned_cols=70 Identities=21% Similarity=0.104 Sum_probs=67.7
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChh-hhhhcCCCchhhhhccCCCcceEEecCCH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQE-TAKELRPNTIRAMYGRNSVENAVHVTDLP 61 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~-~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~ 61 (122)
|++||.+|..++| |+|||+.||+|||||||. +| .|+|||++||.+..+|+||||||+
T Consensus 46 a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~~A---~pgtiR~~fg~~~~~N~vHgSDs~ 122 (136)
T 1k44_A 46 ASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAA---APGTIRGDFALETQFNLVHGSDSA 122 (136)
T ss_dssp HHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTHHHHHHHHHCCSSTTTTS---CTTSHHHHHCCCSTTCCEEECSSH
T ss_pred HHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCHHHHHHHHhCCCCccccC---CCCCcHHHhcCCccceEEEeCCCH
Confidence 7899999999999 889999999999999999 88 899999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy499 62 EDAFFEFGKQCKL 74 (122)
Q Consensus 62 EsA~rEi~fFFp~ 74 (122)
|+|.+||++||++
T Consensus 123 esA~rEi~~fF~~ 135 (136)
T 1k44_A 123 ESAQREIALWFPG 135 (136)
T ss_dssp HHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999985
No 28
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=99.92 E-value=4.4e-26 Score=172.52 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=70.6
Q ss_pred CcchhhhCCCCCC-------------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHH
Q psy499 2 AEPFLETHPKDTF-------------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPE 62 (122)
Q Consensus 2 ~~~~~~~~~~~~~-------------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~E 62 (122)
|++||.+|..++| |+|||+.||+|||||||.+| .|+|||++||.+..+|+||||||+|
T Consensus 68 a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~~A---~PgtIR~~fg~~~~~N~vHgSDs~e 144 (162)
T 1ehw_A 68 LAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASDSVE 144 (162)
T ss_dssp HHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSCCSEEECSSHH
T ss_pred HHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCCC---CCCChHHHhCCCCCCeEEEECCCHH
Confidence 7899999999999 89999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccch
Q psy499 63 DAFFEFGKQCKLLKIT 78 (122)
Q Consensus 63 sA~rEi~fFFp~~~~~ 78 (122)
+|.+||+|||+..+++
T Consensus 145 sA~rEi~~fF~~~e~~ 160 (162)
T 1ehw_A 145 GAQREIQLWFQSSELV 160 (162)
T ss_dssp HHHHHHHHHCCGGGCC
T ss_pred HHHHHHHHhCChhhcc
Confidence 9999999999876655
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=99.86 E-value=2.2e-23 Score=161.61 Aligned_cols=61 Identities=23% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCc----------ceEEecCCHHHHHHHHHhcCCCccch
Q psy499 15 DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVE----------NAVHVTDLPEDAFFEFGKQCKLLKIT 78 (122)
Q Consensus 15 G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~r----------NaVHgSDs~EsA~rEi~fFFp~~~~~ 78 (122)
|+|||+.||+|||||||.+| .|+|||++||.+..+ |+||||||+|+|.|||++||+..+++
T Consensus 124 G~~aV~~~R~l~GpTdP~~A---~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgSDS~esA~rEi~~~F~~~e~~ 194 (195)
T 1xqi_A 124 GNRAVEIVRKLVGPTSPHSA---PPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVL 194 (195)
T ss_dssp STTHHHHHHHHHCCSCGGGS---CTTSHHHHHCCCCHHHHHHTTSCCCCSEEECSSHHHHHHHHHHHCCGGGSC
T ss_pred chhHHHHHHHHhCCCCCCcC---CCCchhHhhcCchhhhccccccccceEEEcCCCHHHHHHHHHHhCChhhcc
Confidence 89999999999999999999 899999999999999 99999999999999999999987654
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.28 E-value=1.8e-13 Score=113.84 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=48.9
Q ss_pred CCcchhhhCCCCCC--------------CCCchHhhhhccCCCChhhhhhcCCCchhhhhccCCCcceEEecCCHHHHHH
Q psy499 1 MAEPFLETHPKDTF--------------DPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFF 66 (122)
Q Consensus 1 ~~~~~~~~~~~~~~--------------G~NAV~~wR~liGptdp~~Ak~~~P~SIRa~fG~d~~rNaVHgSDs~EsA~r 66 (122)
+|+.||.+|..++- |+|||+.||+|||+|+| .|+||||||+|+|++
T Consensus 278 ~a~~~Y~~h~~~Lv~~mtsGPvva~vleG~~av~~~R~l~g~t~p--------------------gN~vHgSds~esA~~ 337 (352)
T 3bh7_B 278 DAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFN--------------------GTKMFVSESKETASG 337 (352)
T ss_dssp HHHHHHGGGGGGTGGGGGGSCEEEEEEESTTHHHHHHHHHHHHCT--------------------TSCEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHhcCCCC--------------------CceEEecCCHHHHHH
Confidence 37899999985532 99999999999999996 299999999999999
Q ss_pred HHHhcCCCcc
Q psy499 67 EFGKQCKLLK 76 (122)
Q Consensus 67 Ei~fFFp~~~ 76 (122)
||++||+..+
T Consensus 338 Ei~~fF~~~~ 347 (352)
T 3bh7_B 338 DVDSFYNFAD 347 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhcCccc
Confidence 9999997654
No 31
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.90 E-value=41 Score=23.08 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=21.5
Q ss_pred chhhhhccCCCcceEEecCCHHHHHHH
Q psy499 41 TIRAMYGRNSVENAVHVTDLPEDAFFE 67 (122)
Q Consensus 41 SIRa~fG~d~~rNaVHgSDs~EsA~rE 67 (122)
++||+|..+.++ ++|-+.||.+..++
T Consensus 46 ~l~Gd~~~~~TK-VlH~~~NPa~~a~~ 71 (100)
T 1go4_E 46 ALQGDYDQSRTK-VLHMSLNPTSVARQ 71 (100)
T ss_dssp SCCSCCCTTTEE-EEEESSCHHHHHHH
T ss_pred hhccccCCccCe-eeeecCChHHHHHH
Confidence 578888877776 89999999988754
Done!