RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy499
(122 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 1e-04
Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 40/124 (32%)
Query: 1 MAEPFLETHP--KDTFDP-DPSYKGN-SFS-------------FIFYQETAKELRPNTIR 43
M +T +D ++ D +K FS F E K +R N
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 44 AMYGRNSVENAVHVTDLPEDAFFEFGKQCKLLKITLKLTEKRPLWTFESPIGQVLSLSLT 103
++ + D + K KI ++ E +TF S G LS T
Sbjct: 1691 MIF------------ETIVDG------KLKTEKIFKEINEHSTSYTFRSEKGL---LSAT 1729
Query: 104 CLQN 107
Q
Sbjct: 1730 --QF 1731
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 36.4 bits (85), Expect = 5e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 34 AKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
A+++ PN+IRA +G + +NA+H +D PE A +E
Sbjct: 98 ARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYE 131
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 33.2 bits (77), Expect = 0.006
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 34 AKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ P TIR + + N VH +D E A E
Sbjct: 95 VQAAAPGTIRGDFALETQFNLVHGSDSAESAQRE 128
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR YG + N +H +D ++ E
Sbjct: 105 PGTIRGDYGNDLGHNLIHGSDHEDEGANE 133
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 33.3 bits (77), Expect = 0.007
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
K+ TIRA + + NAVH +D PE A E
Sbjct: 100 KKAEKGTIRADFADSIDANAVHGSDAPETARVE 132
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + EN +H +D + A E
Sbjct: 100 LASAPGTIRGDLANDIRENLIHASDSEDSAVDE 132
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 33.0 bits (76), Expect = 0.010
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + + N +H +D E A E
Sbjct: 121 PGTIRGDFSVHISRNVIHASDSVEGAQRE 149
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 32.9 bits (76), Expect = 0.011
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ TIR YG ++ +N +H +D E+A E
Sbjct: 98 QAASVGTIRGDYGVSTGKNIIHGSDCVENAEKE 130
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + EN +H + EDA E
Sbjct: 98 PGTIRGDFATTIDENVIHGSATLEDAQRE 126
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
+ TIR + + +N VH +D E+A E
Sbjct: 95 AQAAEGTIRKDFATSIDKNTVHGSDSLENAKIE 127
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 32.9 bits (76), Expect = 0.012
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR +G +N +H +D E A E
Sbjct: 98 PGTIRGDFGVTVAKNIIHGSDSLESAERE 126
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + N +H +D + A E
Sbjct: 100 PGTIRGDFCIQVGRNIIHGSDSVKSAEKE 128
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P +IR +G + N + +D E A E
Sbjct: 105 PGSIRGDFGVDVGRNIIGGSDSVESANRE 133
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
T+RA Y + EN H +D E A E
Sbjct: 95 ANALAGTLRADYADSLTENGTHGSDSVESAARE 127
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR +G ++ NA+H +D A E
Sbjct: 99 PGTIRGDFGVSAGRNAIHGSDSAGSAAKE 127
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 32.6 bits (75), Expect = 0.013
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + +N +H +D E A E
Sbjct: 118 PGTIRGDFCIEVGKNLIHGSDSVESARRE 146
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 32.5 bits (75), Expect = 0.014
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
TIR + +N +H +D A E
Sbjct: 106 TGTIRGDFCLEVSKNVIHGSDSVASANKE 134
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 32.5 bits (75), Expect = 0.016
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P +IR G N +H +D E A E
Sbjct: 98 PGSIRGDLGLTVGRNIIHGSDSLESAERE 126
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 32.7 bits (75), Expect = 0.016
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
++ P TIR N +H +D PE A E
Sbjct: 125 QKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDE 157
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + N VH +D PE+ E
Sbjct: 102 PGTIRGDLAVQTGRNIVHGSDSPENGKRE 130
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 32.1 bits (74), Expect = 0.018
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIRA Y N +H +D ++ E
Sbjct: 99 PGTIRADYAVEVGRNVIHGSDSVDNGKKE 127
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 32.1 bits (74), Expect = 0.019
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR +G + N +H + +DA E
Sbjct: 104 PGTIRGDFGIDVGRNIIHGSANLDDAARE 132
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 32.2 bits (74), Expect = 0.020
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR +G + N H +D + A E
Sbjct: 110 PGTIRGDFGIDLGRNVCHGSDSVDSAERE 138
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 32.2 bits (74), Expect = 0.021
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
TIR +G N VH + EDA E
Sbjct: 106 AGTIRGDFGVVKNFNIVHASSSAEDAARE 134
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 32.2 bits (74), Expect = 0.021
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + + N H +D E A E
Sbjct: 108 PGTIRGDFAVDVGRNVCHGSDSVESAKRE 136
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 32.2 bits (74), Expect = 0.022
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 39 PNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + N +H +D E A E
Sbjct: 121 PGTIRGDFCIQVGRNIIHGSDSVESAEKE 149
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 35 KELRPNTIRAMYGRNSVENAVHVTDLPEDAFFE 67
P TIR + + N +H +D E A E
Sbjct: 94 AASEPGTIRGDFAIDIGRNVIHGSDSVESARKE 126
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 30.3 bits (69), Expect = 0.089
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 35 KELRPNTIRAMYGRN---SVENAVHVTDLPEDAFFE 67
K+ P TIR +G ++ N +H +D E A E
Sbjct: 100 KDAAPGTIRGDFGLEVSDAICNVIHASDSKESAERE 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.12
Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 35/117 (29%)
Query: 5 FLETHPKDTFDPDPSYKGNSFSFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDLPEDA 64
+ T+D + + I + + L P R M+ R SV P A
Sbjct: 336 SIRDGL-ATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSV--------FPPSA 385
Query: 65 FFEFGKQCKLLKITLKLTEKRPLWTFESPIGQVLSLSLTCLQNPMKIVPNGNRARLI 121
I L +W + M +V ++ L+
Sbjct: 386 -----------HIPTILLSL--IWFDVIK------------SDVMVVVNKLHKYSLV 417
Score = 29.4 bits (65), Expect = 0.32
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 31/121 (25%)
Query: 14 FDPDPSYKGNSFSFIFYQ-ETAKELRPNTIRAMYGRNS------VENAVHVTDLPEDAFF 66
DP+ + + + S I + + + +++ N V+NA +AF
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-----NAF- 262
Query: 67 EFGKQCKLLKIT--------------LKLTEKRPLWTFESPIGQVLSLSLTCLQNPMKIV 112
CK+L T ++ T +V SL L L + +
Sbjct: 263 --NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDL 318
Query: 113 P 113
P
Sbjct: 319 P 319
Score = 26.4 bits (57), Expect = 2.9
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 20/111 (18%)
Query: 31 QETAKELRPN---TIRAM--YGRNSVENAVHVTDLPEDAFFEFG------KQCK----LL 75
++ ELRP I + G+ V V +F K C +L
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 76 KITLKLTEK-RPLWTFESPIGQVLSLSLTCLQNPMKIV---PNGNRARLIV 122
++ KL + P WT S + L + +Q ++ + L++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 28.1 bits (63), Expect = 0.64
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 39 PNTIRAMYGRNS----------VENAVHVTDLPEDAFFE 67
P TIR + +S + N +H + DA E
Sbjct: 128 PGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMRE 166
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein
structure initiative, structural GEN pathogenic protozoa
consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB:
3bwb_A*
Length = 304
Score = 27.7 bits (62), Expect = 0.87
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 5 FLETHPKDTFD------PDPSYKGNS-FSFIFYQETAKELRPNTI 42
F+ P +T+D DP+ + F FY++ + L+P+ I
Sbjct: 161 FVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGI 205
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 27.2 bits (60), Expect = 1.1
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 39 PNTIRAMYGRNSVE----------NAVHVTDLPEDAFFE 67
P TIR Y +S + N VH +D P +A E
Sbjct: 145 PGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAERE 183
>1xj5_A Spermidine synthase 1; structural genomics, protein structure
initiative, CESG, AT1G23820, putrescine aminopropyl
transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP:
c.66.1.17 PDB: 2q41_A
Length = 334
Score = 27.0 bits (60), Expect = 1.8
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 5 FLETHPKDTFD------PDPSYKGNS-FSFIFYQETAKELRPNTI 42
FL+ + ++D DP F F+Q A+ LRP +
Sbjct: 186 FLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGV 230
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein;
ZP_00055496.1, COG1633: uncharacterized conSer protein;
HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum}
SCOP: a.25.1.8
Length = 167
Score = 25.1 bits (54), Expect = 6.6
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 26 SFIFYQETAKELRPNTIRAMYGRNSVENAVHVTDL 60
+Y+E A ++ + + E A HV L
Sbjct: 108 GMEYYKEAAANSADPEVKRLGADFAAEEAEHVVAL 142
>3imf_A Short chain dehydrogenase; structural genomics, infectious D
center for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 25.2 bits (56), Expect = 6.9
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 31 QETAKELRPNTIRAMYGRNSVENAVHVTDLPEDAFFEFGK 70
+E E+ + + + V N + + E +FG+
Sbjct: 44 EEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 7.4
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 70 KQ-CKLLKITLKLTEKRPLWTFES-PIGQVLSLSLT 103
KQ K L+ +LKL +S P L++ T
Sbjct: 19 KQALKKLQASLKLYA--D----DSAP---ALAIKAT 45
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag
repair, structural genomics consortium, SGC, protein
bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Length = 348
Score = 24.8 bits (55), Expect = 9.0
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 24 SFSFIFYQETAKELRPN-------TIRAMYGRNSVENAVHVTDLPEDAFFE 67
SFS ET ++R IR+++G + + + F+
Sbjct: 192 SFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFK 242
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA
degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A
{Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5
b.40.4.5 b.40.4.16
Length = 760
Score = 25.0 bits (55), Expect = 9.7
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 48 RNSVENAVHVTDLPED-AFFEF 68
+ VE + + +L ED F
Sbjct: 691 KFGVEGLIRLDNLTEDPNSAAF 712
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,845,686
Number of extensions: 94071
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 48
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)